HEADER TRANSFERASE 09-NOV-04 1VPK TITLE CRYSTAL STRUCTURE OF DNA POLYMERASE III, BETA SUBUNIT (TM0262) FROM TITLE 2 THERMOTOGA MARITIMA AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE III, BETA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM0262; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0262, DNA POLYMERASE III, BETA SUBUNIT, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 20-SEP-23 1VPK 1 REMARK REVDAT 4 25-JAN-23 1VPK 1 SEQADV REVDAT 3 13-JUL-11 1VPK 1 VERSN REVDAT 2 24-FEB-09 1VPK 1 VERSN REVDAT 1 23-NOV-04 1VPK 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF DNA POLYMERASE III, BETA SUBUNIT JRNL TITL 2 (TM0262) FROM THERMOTOGA MARITIMA AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 30962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1656 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2225 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2853 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 46.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.794 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2945 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2759 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3995 ; 1.668 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6432 ; 0.835 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 6.838 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;38.794 ;25.591 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 543 ;14.727 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.970 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 483 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3232 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 544 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 510 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2696 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1422 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1910 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.250 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 71 ; 0.196 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1932 ; 1.174 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 743 ; 0.267 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3039 ; 1.649 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1152 ; 2.739 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 956 ; 4.348 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 129 REMARK 3 RESIDUE RANGE : A 212 A 235 REMARK 3 ORIGIN FOR THE GROUP (A): 63.4450 40.4100 27.5430 REMARK 3 T TENSOR REMARK 3 T11: -0.1878 T22: -0.3159 REMARK 3 T33: -0.1742 T12: 0.0422 REMARK 3 T13: -0.0085 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 4.6054 L22: 2.6923 REMARK 3 L33: 2.3303 L12: 2.4602 REMARK 3 L13: -1.6174 L23: -1.0837 REMARK 3 S TENSOR REMARK 3 S11: 0.1662 S12: -0.0520 S13: 0.0429 REMARK 3 S21: 0.2892 S22: -0.2270 S23: -0.0467 REMARK 3 S31: 0.0280 S32: 0.0190 S33: 0.0608 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): 47.2870 22.2530 22.6340 REMARK 3 T TENSOR REMARK 3 T11: -0.1158 T22: -0.3230 REMARK 3 T33: -0.1496 T12: -0.0464 REMARK 3 T13: 0.0891 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 3.5249 L22: 3.8096 REMARK 3 L33: 2.8868 L12: 1.1547 REMARK 3 L13: 1.2455 L23: 1.0392 REMARK 3 S TENSOR REMARK 3 S11: 0.1988 S12: -0.0937 S13: -0.1327 REMARK 3 S21: -0.0641 S22: -0.2707 S23: -0.0693 REMARK 3 S31: 0.1768 S32: -0.1435 S33: 0.0718 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 236 A 365 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5380 13.5450 2.9990 REMARK 3 T TENSOR REMARK 3 T11: -0.1250 T22: -0.3052 REMARK 3 T33: -0.1017 T12: 0.0320 REMARK 3 T13: 0.0905 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.6661 L22: 1.3937 REMARK 3 L33: 3.0441 L12: -0.4524 REMARK 3 L13: -0.5223 L23: 0.8628 REMARK 3 S TENSOR REMARK 3 S11: 0.2784 S12: 0.0726 S13: 0.1852 REMARK 3 S21: 0.0272 S22: -0.1238 S23: -0.0139 REMARK 3 S31: -0.2805 S32: -0.2077 S33: -0.1546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000002039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9919 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32639 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.66 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 39.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.58 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.80900 REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1JQJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6.25% PEG-6000, 0.1M CITRATE PH 4.0, REMARK 280 VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.85100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.85100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.73150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.85100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.85100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.73150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.85100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.85100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.73150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.85100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.85100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.73150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 91.70200 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 91.70200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 386 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 454 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 CD CE NZ REMARK 470 VAL A 26 CG1 CG2 REMARK 470 LYS A 38 CE NZ REMARK 470 GLU A 139 CD OE1 OE2 REMARK 470 GLU A 186 CD OE1 OE2 REMARK 470 ARG A 220 NE CZ NH1 NH2 REMARK 470 LYS A 252 CE NZ REMARK 470 LYS A 267 CE NZ REMARK 470 LYS A 321 CG CD CE NZ REMARK 470 ARG A 364 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 244 O HOH A 507 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 24 -39.67 -10.96 REMARK 500 VAL A 26 90.44 68.29 REMARK 500 LYS A 27 83.61 58.71 REMARK 500 LEU A 49 -11.93 77.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282139 RELATED DB: TARGETDB DBREF 1VPK A 1 366 UNP Q9WYA0 Q9WYA0_THEMA 1 366 SEQADV 1VPK MET A -11 UNP Q9WYA0 EXPRESSION TAG SEQADV 1VPK GLY A -10 UNP Q9WYA0 EXPRESSION TAG SEQADV 1VPK SER A -9 UNP Q9WYA0 EXPRESSION TAG SEQADV 1VPK ASP A -8 UNP Q9WYA0 EXPRESSION TAG SEQADV 1VPK LYS A -7 UNP Q9WYA0 EXPRESSION TAG SEQADV 1VPK ILE A -6 UNP Q9WYA0 EXPRESSION TAG SEQADV 1VPK HIS A -5 UNP Q9WYA0 EXPRESSION TAG SEQADV 1VPK HIS A -4 UNP Q9WYA0 EXPRESSION TAG SEQADV 1VPK HIS A -3 UNP Q9WYA0 EXPRESSION TAG SEQADV 1VPK HIS A -2 UNP Q9WYA0 EXPRESSION TAG SEQADV 1VPK HIS A -1 UNP Q9WYA0 EXPRESSION TAG SEQADV 1VPK HIS A 0 UNP Q9WYA0 EXPRESSION TAG SEQRES 1 A 378 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 378 LYS VAL THR VAL THR THR LEU GLU LEU LYS ASP LYS ILE SEQRES 3 A 378 THR ILE ALA SER LYS ALA LEU ALA LYS LYS SER VAL LYS SEQRES 4 A 378 PRO ILE LEU ALA GLY PHE LEU PHE GLU VAL LYS ASP GLY SEQRES 5 A 378 ASN PHE TYR ILE CYS ALA THR ASP LEU GLU THR GLY VAL SEQRES 6 A 378 LYS ALA THR VAL ASN ALA ALA GLU ILE SER GLY GLU ALA SEQRES 7 A 378 ARG PHE VAL VAL PRO GLY ASP VAL ILE GLN LYS MET VAL SEQRES 8 A 378 LYS VAL LEU PRO ASP GLU ILE THR GLU LEU SER LEU GLU SEQRES 9 A 378 GLY ASP ALA LEU VAL ILE SER SER GLY SER THR VAL PHE SEQRES 10 A 378 ARG ILE THR THR MET PRO ALA ASP GLU PHE PRO GLU ILE SEQRES 11 A 378 THR PRO ALA GLU SER GLY ILE THR PHE GLU VAL ASP THR SEQRES 12 A 378 SER LEU LEU GLU GLU MET VAL GLU LYS VAL ILE PHE ALA SEQRES 13 A 378 ALA ALA LYS ASP GLU PHE MET ARG ASN LEU ASN GLY VAL SEQRES 14 A 378 PHE TRP GLU LEU HIS LYS ASN LEU LEU ARG LEU VAL ALA SEQRES 15 A 378 SER ASP GLY PHE ARG LEU ALA LEU ALA GLU GLU GLN ILE SEQRES 16 A 378 GLU ASN GLU GLU GLU ALA SER PHE LEU LEU SER LEU LYS SEQRES 17 A 378 SER MET LYS GLU VAL GLN ASN VAL LEU ASP ASN THR THR SEQRES 18 A 378 GLU PRO THR ILE THR VAL ARG TYR ASP GLY ARG ARG VAL SEQRES 19 A 378 SER LEU SER THR ASN ASP VAL GLU THR VAL MET ARG VAL SEQRES 20 A 378 VAL ASP ALA GLU PHE PRO ASP TYR LYS ARG VAL ILE PRO SEQRES 21 A 378 GLU THR PHE LYS THR LYS VAL VAL VAL SER ARG LYS GLU SEQRES 22 A 378 LEU ARG GLU SER LEU LYS ARG VAL MET VAL ILE ALA SER SEQRES 23 A 378 LYS GLY SER GLU SER VAL LYS PHE GLU ILE GLU GLU ASN SEQRES 24 A 378 VAL MET ARG LEU VAL SER LYS SER PRO ASP TYR GLY GLU SEQRES 25 A 378 VAL VAL ASP GLU VAL GLU VAL GLN LYS GLU GLY GLU ASP SEQRES 26 A 378 LEU VAL ILE ALA PHE ASN PRO LYS PHE ILE GLU ASP VAL SEQRES 27 A 378 LEU LYS HIS ILE GLU THR GLU GLU ILE GLU MET ASN PHE SEQRES 28 A 378 VAL ASP SER THR SER PRO CYS GLN ILE ASN PRO LEU ASP SEQRES 29 A 378 ILE SER GLY TYR LEU TYR ILE VAL MET PRO ILE ARG LEU SEQRES 30 A 378 ALA FORMUL 2 HOH *164(H2 O) HELIX 1 1 THR A 7 SER A 18 1 12 HELIX 2 2 LYS A 19 LEU A 21 5 3 HELIX 3 3 LYS A 27 LEU A 30 5 4 HELIX 4 4 GLY A 72 LYS A 80 1 9 HELIX 5 5 THR A 131 ILE A 142 1 12 HELIX 6 6 PHE A 143 ALA A 145 5 3 HELIX 7 7 LEU A 195 ASN A 207 1 13 HELIX 8 8 ASP A 242 ILE A 247 5 6 HELIX 9 9 ARG A 259 SER A 274 1 16 HELIX 10 10 ASN A 319 ILE A 330 1 12 SHEET 1 A 5 GLU A 61 GLY A 64 0 SHEET 2 A 5 MET A 1 THR A 6 -1 N LYS A 2 O SER A 63 SHEET 3 A 5 ILE A 86 GLU A 92 -1 O LEU A 89 N VAL A 3 SHEET 4 A 5 ALA A 95 SER A 100 -1 O VAL A 97 N SER A 90 SHEET 5 A 5 THR A 103 THR A 108 -1 O ILE A 107 N LEU A 96 SHEET 1 B 8 ALA A 66 PRO A 71 0 SHEET 2 B 8 GLY A 32 LYS A 38 -1 N PHE A 35 O PHE A 68 SHEET 3 B 8 ASN A 41 THR A 47 -1 O TYR A 43 N GLU A 36 SHEET 4 B 8 THR A 51 THR A 56 -1 O ALA A 55 N ILE A 44 SHEET 5 B 8 VAL A 229 ARG A 234 -1 O GLU A 230 N LYS A 54 SHEET 6 B 8 ARG A 221 SER A 225 -1 N LEU A 224 O THR A 231 SHEET 7 B 8 THR A 212 TYR A 217 -1 N THR A 214 O SER A 225 SHEET 8 B 8 ILE A 125 ASP A 130 -1 N ILE A 125 O TYR A 217 SHEET 1 C 9 ALA A 189 SER A 194 0 SHEET 2 C 9 GLY A 156 HIS A 162 -1 N LEU A 161 O ALA A 189 SHEET 3 C 9 LEU A 165 SER A 171 -1 O VAL A 169 N PHE A 158 SHEET 4 C 9 ARG A 175 GLN A 182 -1 O ALA A 177 N ALA A 170 SHEET 5 C 9 TYR A 356 VAL A 360 -1 O LEU A 357 N LEU A 178 SHEET 6 C 9 CYS A 346 PRO A 350 -1 N ILE A 348 O TYR A 358 SHEET 7 C 9 GLU A 334 PHE A 339 -1 N GLU A 336 O ASN A 349 SHEET 8 C 9 THR A 253 SER A 258 -1 N THR A 253 O PHE A 339 SHEET 9 C 9 GLN A 308 GLY A 311 -1 O GLN A 308 N VAL A 256 SHEET 1 D 4 GLY A 299 GLU A 306 0 SHEET 2 D 4 VAL A 288 SER A 295 -1 N SER A 295 O GLY A 299 SHEET 3 D 4 VAL A 280 ILE A 284 -1 N LYS A 281 O VAL A 292 SHEET 4 D 4 LEU A 314 PHE A 318 -1 O LEU A 314 N ILE A 284 CRYST1 91.702 91.702 111.463 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010905 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008972 0.00000