HEADER VIRUS/RNA 30-MAR-92 1VTM TITLE STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 TITLE 2 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(P*GP*AP*A)-3'); COMPND 3 CHAIN: R; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COAT PROTEIN; COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2 KEYWDS VIRUS, HELICAL VIRUS, VIRUS-RNA COMPLEX EXPDTA FIBER DIFFRACTION AUTHOR G.STUBBS,R.PATTANAYEK REVDAT 5 14-FEB-24 1VTM 1 REMARK SEQADV REVDAT 4 29-NOV-17 1VTM 1 HELIX REVDAT 3 24-FEB-09 1VTM 1 VERSN REVDAT 2 01-APR-03 1VTM 1 JRNL REVDAT 1 31-JUL-94 1VTM 0 JRNL AUTH R.PATTANAYEK,G.STUBBS JRNL TITL STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED JRNL TITL 2 AT 3.5 A RESOLUTION USING X-RAY FIBER DIFFRACTION. JRNL REF J.MOL.BIOL. V. 228 516 1992 JRNL REFN ISSN 0022-2836 JRNL PMID 1453461 JRNL DOI 10.1016/0022-2836(92)90839-C REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.WANG,G.STUBBS REMARK 1 TITL MOLECULAR DYNAMICS IN REFINEMENT AGAINST FIBER DIFFRACTION REMARK 1 TITL 2 DATA REMARK 1 REF ACTA CRYSTALLOGR.,SECT.A V. 49 504 1993 REMARK 1 REFN ISSN 0108-7673 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.STUBBS,K.NAMBA,L.MAKOWSKI REMARK 1 TITL APPLICATION OF RESTRAINED LEAST-SQUARES REFINEMENT TO FIBER REMARK 1 TITL 2 DIFFRACTION FROM MACROMOLECULAR ASSEMBLIES REMARK 1 REF BIOPHYS.J. V. 49 58 1986 REMARK 1 REFN ISSN 0006-3495 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.NAMBA,G.STUBBS REMARK 1 TITL SOLVING THE PHASE PROBLEM IN FIBER DIFFRACTION. APPLICATION REMARK 1 TITL 2 TO TOBACCO MOSAIC VIRUS AT 3.6 ANGSTROMS RESOLUTION REMARK 1 REF ACTA CRYSTALLOGR.,SECT.A V. 41 252 1985 REMARK 1 REFN ISSN 0108-7673 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.096 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1232 REMARK 3 NUCLEIC ACID ATOMS : 67 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.019 ; NULL REMARK 3 ANGLE DISTANCE (A) : 4.100 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS STRUCTURE WAS DETERMINED FROM FIBER DIFFRACTION DATA REMARK 3 BY MOLECULAR REPLACEMENT FROM TMV, PROTEIN DATA BANK ENTRY REMARK 3 2TMV. U2 HAS 72 PER CENT SEQUENCE HOMOLOGY WITH TMV. REMARK 3 THIS STRUCTURE INCLUDES ALL 158 AMINO ACIDS AND 3 RNA REMARK 3 NUCLEOTIDES, MODELED AS GAA BUT REPRESENTING THE ENTIRE REMARK 3 GENOME. THERE IS ONE SMALL SHEET IN THIS STRUCTURE BUT IT REMARK 3 IS TOO IRREGULAR TO INCLUDE. REMARK 4 REMARK 4 1VTM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : FIBER DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 205 REMARK 205 FIBER DIFFRACTION REMARK 205 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM FIBER REMARK 205 DIFFRACTION DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 205 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE REMARK 205 VALUES ON THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW REMARK 300 REPRESENTS HELICAL SYMMETRY WITH THE HELIX AXIS ON THE Z REMARK 300 AXIS. THERE ARE 49 SUBUNITS IN 3 TURNS OF THE HELIX. THE REMARK 300 FULL (49 SUBUNIT) HELICAL REPEAT IS 69 ANGSTROMS. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 HELICAL SYMMETRY WITH THE FOLLOWING PARAMETERS: REMARK 300 ROTATION PER SUBUNIT (TWIST) = 1080.00/49 DEGREES REMARK 300 RISE PER SUBUNIT (HEIGHT) = 69.00/49 ANGSTROMS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, P REMARK 350 BIOMT1 1 -0.981559 0.191159 0.000000 0.00000 REMARK 350 BIOMT2 1 -0.191159 -0.981559 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 -33.79592 REMARK 350 BIOMT1 2 -0.838088 0.545535 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.545535 -0.838088 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -32.38776 REMARK 350 BIOMT1 3 -0.572117 0.820172 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.820172 -0.572117 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -30.97959 REMARK 350 BIOMT1 4 -0.222521 0.974928 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.974928 -0.222521 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -29.57143 REMARK 350 BIOMT1 5 0.159600 0.987182 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.987182 0.159600 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -28.16327 REMARK 350 BIOMT1 6 0.518393 0.855143 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.855143 0.518393 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -26.75510 REMARK 350 BIOMT1 7 0.801414 0.598111 0.000000 0.00000 REMARK 350 BIOMT2 7 -0.598111 0.801414 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -25.34694 REMARK 350 BIOMT1 8 0.967295 0.253655 0.000000 0.00000 REMARK 350 BIOMT2 8 -0.253655 0.967295 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -23.93878 REMARK 350 BIOMT1 9 0.991790 -0.127877 0.000000 0.00000 REMARK 350 BIOMT2 9 0.127877 0.991790 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -22.53061 REMARK 350 BIOMT1 10 0.871319 -0.490718 0.000000 0.00000 REMARK 350 BIOMT2 10 0.490718 0.871319 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 -21.12245 REMARK 350 BIOMT1 11 0.623490 -0.781831 0.000000 0.00000 REMARK 350 BIOMT2 11 0.781831 0.623490 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 -19.71429 REMARK 350 BIOMT1 12 0.284528 -0.958668 0.000000 0.00000 REMARK 350 BIOMT2 12 0.958668 0.284528 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 -18.30612 REMARK 350 BIOMT1 13 -0.096023 -0.995379 0.000000 0.00000 REMARK 350 BIOMT2 13 0.995379 -0.096023 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 -16.89796 REMARK 350 BIOMT1 14 -0.462538 -0.886599 0.000000 0.00000 REMARK 350 BIOMT2 14 0.886599 -0.462538 0.000000 0.00000 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 -15.48980 REMARK 350 BIOMT1 15 -0.761446 -0.648228 0.000000 0.00000 REMARK 350 BIOMT2 15 0.648228 -0.761446 0.000000 0.00000 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 -14.08163 REMARK 350 BIOMT1 16 -0.949056 -0.315108 0.000000 0.00000 REMARK 350 BIOMT2 16 0.315108 -0.949056 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 -12.67347 REMARK 350 BIOMT1 17 -0.997945 0.064070 0.000000 0.00000 REMARK 350 BIOMT2 17 -0.064070 -0.997945 0.000000 0.00000 REMARK 350 BIOMT3 17 0.000000 0.000000 1.000000 -11.26531 REMARK 350 BIOMT1 18 -0.900969 0.433884 0.000000 0.00000 REMARK 350 BIOMT2 18 -0.433884 -0.900969 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 0.000000 1.000000 -9.85714 REMARK 350 BIOMT1 19 -0.672301 0.740278 0.000000 0.00000 REMARK 350 BIOMT2 19 -0.740278 -0.672301 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 1.000000 -8.44898 REMARK 350 BIOMT1 20 -0.345365 0.938468 0.000000 0.00000 REMARK 350 BIOMT2 20 -0.938468 -0.345365 0.000000 0.00000 REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 -7.04082 REMARK 350 BIOMT1 21 0.032052 0.999486 0.000000 0.00000 REMARK 350 BIOMT2 21 -0.999486 0.032052 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 0.000000 1.000000 -5.63265 REMARK 350 BIOMT1 22 0.404783 0.914413 0.000000 0.00000 REMARK 350 BIOMT2 22 -0.914413 0.404783 0.000000 0.00000 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 -4.22449 REMARK 350 BIOMT1 23 0.718349 0.695683 0.000000 0.00000 REMARK 350 BIOMT2 23 -0.695683 0.718349 0.000000 0.00000 REMARK 350 BIOMT3 23 0.000000 0.000000 1.000000 -2.81633 REMARK 350 BIOMT1 24 0.926917 0.375267 0.000000 0.00000 REMARK 350 BIOMT2 24 -0.375267 0.926917 0.000000 0.00000 REMARK 350 BIOMT3 24 0.000000 0.000000 1.000000 -1.40816 REMARK 350 BIOMT1 25 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 25 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 25 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 26 0.926917 -0.375267 0.000000 0.00000 REMARK 350 BIOMT2 26 0.375267 0.926917 0.000000 0.00000 REMARK 350 BIOMT3 26 0.000000 0.000000 1.000000 1.40816 REMARK 350 BIOMT1 27 0.718349 -0.695683 0.000000 0.00000 REMARK 350 BIOMT2 27 0.695683 0.718349 0.000000 0.00000 REMARK 350 BIOMT3 27 0.000000 0.000000 1.000000 2.81633 REMARK 350 BIOMT1 28 0.404783 -0.914413 0.000000 0.00000 REMARK 350 BIOMT2 28 0.914413 0.404783 0.000000 0.00000 REMARK 350 BIOMT3 28 0.000000 0.000000 1.000000 4.22449 REMARK 350 BIOMT1 29 0.032052 -0.999486 0.000000 0.00000 REMARK 350 BIOMT2 29 0.999486 0.032052 0.000000 0.00000 REMARK 350 BIOMT3 29 0.000000 0.000000 1.000000 5.63265 REMARK 350 BIOMT1 30 -0.345365 -0.938468 0.000000 0.00000 REMARK 350 BIOMT2 30 0.938468 -0.345365 0.000000 0.00000 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 7.04082 REMARK 350 BIOMT1 31 -0.672301 -0.740278 0.000000 0.00000 REMARK 350 BIOMT2 31 0.740278 -0.672301 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 1.000000 8.44898 REMARK 350 BIOMT1 32 -0.900969 -0.433884 0.000000 0.00000 REMARK 350 BIOMT2 32 0.433884 -0.900969 0.000000 0.00000 REMARK 350 BIOMT3 32 0.000000 0.000000 1.000000 9.85714 REMARK 350 BIOMT1 33 -0.997945 -0.064070 0.000000 0.00000 REMARK 350 BIOMT2 33 0.064070 -0.997945 0.000000 0.00000 REMARK 350 BIOMT3 33 0.000000 0.000000 1.000000 11.26531 REMARK 350 BIOMT1 34 -0.949056 0.315108 0.000000 0.00000 REMARK 350 BIOMT2 34 -0.315108 -0.949056 0.000000 0.00000 REMARK 350 BIOMT3 34 0.000000 0.000000 1.000000 12.67347 REMARK 350 BIOMT1 35 -0.761446 0.648228 0.000000 0.00000 REMARK 350 BIOMT2 35 -0.648228 -0.761446 0.000000 0.00000 REMARK 350 BIOMT3 35 0.000000 0.000000 1.000000 14.08163 REMARK 350 BIOMT1 36 -0.462538 0.886599 0.000000 0.00000 REMARK 350 BIOMT2 36 -0.886599 -0.462538 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 0.000000 1.000000 15.48980 REMARK 350 BIOMT1 37 -0.096023 0.995379 0.000000 0.00000 REMARK 350 BIOMT2 37 -0.995379 -0.096023 0.000000 0.00000 REMARK 350 BIOMT3 37 0.000000 0.000000 1.000000 16.89796 REMARK 350 BIOMT1 38 0.284528 0.958668 0.000000 0.00000 REMARK 350 BIOMT2 38 -0.958668 0.284528 0.000000 0.00000 REMARK 350 BIOMT3 38 0.000000 0.000000 1.000000 18.30612 REMARK 350 BIOMT1 39 0.623490 0.781831 0.000000 0.00000 REMARK 350 BIOMT2 39 -0.781831 0.623490 0.000000 0.00000 REMARK 350 BIOMT3 39 0.000000 0.000000 1.000000 19.71429 REMARK 350 BIOMT1 40 0.871319 0.490718 0.000000 0.00000 REMARK 350 BIOMT2 40 -0.490718 0.871319 0.000000 0.00000 REMARK 350 BIOMT3 40 0.000000 0.000000 1.000000 21.12245 REMARK 350 BIOMT1 41 0.991790 0.127877 0.000000 0.00000 REMARK 350 BIOMT2 41 -0.127877 0.991790 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 0.000000 1.000000 22.53061 REMARK 350 BIOMT1 42 0.967295 -0.253655 0.000000 0.00000 REMARK 350 BIOMT2 42 0.253655 0.967295 0.000000 0.00000 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 23.93878 REMARK 350 BIOMT1 43 0.801414 -0.598111 0.000000 0.00000 REMARK 350 BIOMT2 43 0.598111 0.801414 0.000000 0.00000 REMARK 350 BIOMT3 43 0.000000 0.000000 1.000000 25.34694 REMARK 350 BIOMT1 44 0.518393 -0.855143 0.000000 0.00000 REMARK 350 BIOMT2 44 0.855143 0.518393 0.000000 0.00000 REMARK 350 BIOMT3 44 0.000000 0.000000 1.000000 26.75510 REMARK 350 BIOMT1 45 0.159600 -0.987182 0.000000 0.00000 REMARK 350 BIOMT2 45 0.987182 0.159600 0.000000 0.00000 REMARK 350 BIOMT3 45 0.000000 0.000000 1.000000 28.16327 REMARK 350 BIOMT1 46 -0.222521 -0.974928 0.000000 0.00000 REMARK 350 BIOMT2 46 0.974928 -0.222521 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 0.000000 1.000000 29.57143 REMARK 350 BIOMT1 47 -0.572117 -0.820172 0.000000 0.00000 REMARK 350 BIOMT2 47 0.820172 -0.572117 0.000000 0.00000 REMARK 350 BIOMT3 47 0.000000 0.000000 1.000000 30.97959 REMARK 350 BIOMT1 48 -0.838088 -0.545535 0.000000 0.00000 REMARK 350 BIOMT2 48 0.545535 -0.838088 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 0.000000 1.000000 32.38776 REMARK 350 BIOMT1 49 -0.981559 -0.191159 0.000000 0.00000 REMARK 350 BIOMT2 49 0.191159 -0.981559 0.000000 0.00000 REMARK 350 BIOMT3 49 0.000000 0.000000 1.000000 33.79592 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G R 1 P G R 1 O5' 0.075 REMARK 500 A R 3 N9 A R 3 C4 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G R 1 C5' - C4' - O4' ANGL. DEV. = 6.0 DEGREES REMARK 500 G R 1 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 G R 1 C8 - N9 - C4 ANGL. DEV. = -3.0 DEGREES REMARK 500 G R 1 C3' - O3' - P ANGL. DEV. = 13.2 DEGREES REMARK 500 A R 2 P - O5' - C5' ANGL. DEV. = -12.0 DEGREES REMARK 500 A R 2 C5' - C4' - C3' ANGL. DEV. = -14.9 DEGREES REMARK 500 A R 2 C4' - C3' - C2' ANGL. DEV. = 10.3 DEGREES REMARK 500 A R 2 O4' - C1' - N9 ANGL. DEV. = 11.3 DEGREES REMARK 500 A R 3 C3' - C2' - C1' ANGL. DEV. = -4.7 DEGREES REMARK 500 A R 3 N9 - C1' - C2' ANGL. DEV. = 10.2 DEGREES REMARK 500 A R 3 O4' - C1' - N9 ANGL. DEV. = 6.7 DEGREES REMARK 500 A R 3 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 A R 3 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 A R 3 C5 - C6 - N6 ANGL. DEV. = -5.3 DEGREES REMARK 500 TYR P 12 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR P 17 CA - C - N ANGL. DEV. = -18.2 DEGREES REMARK 500 CYS P 27 CA - CB - SG ANGL. DEV. = 11.6 DEGREES REMARK 500 VAL P 44 CA - CB - CG2 ANGL. DEV. = -11.4 DEGREES REMARK 500 TRP P 52 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP P 52 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 TRP P 52 CE2 - CD2 - CG ANGL. DEV. = -6.9 DEGREES REMARK 500 TRP P 52 CG - CD2 - CE3 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG P 61 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 TYR P 68 CA - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 TYR P 72 CA - C - N ANGL. DEV. = -14.4 DEGREES REMARK 500 LEU P 79 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 VAL P 96 N - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 GLU P 106 CA - C - N ANGL. DEV. = -22.8 DEGREES REMARK 500 GLU P 106 O - C - N ANGL. DEV. = 11.4 DEGREES REMARK 500 TRP P 152 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP P 152 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE P 4 94.38 -57.98 REMARK 500 ASN P 5 -71.58 -107.84 REMARK 500 GLN P 9 -64.24 -28.31 REMARK 500 PHE P 10 0.68 -64.90 REMARK 500 PRO P 20 -85.45 -56.41 REMARK 500 LEU P 26 -75.85 -69.36 REMARK 500 ASN P 33 -84.05 -157.23 REMARK 500 GLN P 34 81.65 178.82 REMARK 500 PHE P 35 21.50 -66.08 REMARK 500 THR P 42 -75.21 -49.00 REMARK 500 GLN P 47 -72.92 -67.35 REMARK 500 LYS P 53 -168.78 -100.63 REMARK 500 SER P 55 -73.25 -172.58 REMARK 500 ARG P 71 -73.50 -35.10 REMARK 500 ARG P 90 -80.23 -155.70 REMARK 500 ASN P 91 -72.35 -146.97 REMARK 500 VAL P 96 -173.62 -12.48 REMARK 500 ASN P 97 36.04 -76.63 REMARK 500 ASN P 98 -157.02 -77.02 REMARK 500 ALA P 101 68.53 31.70 REMARK 500 ASN P 103 100.66 -56.81 REMARK 500 THR P 104 -72.09 -36.80 REMARK 500 VAL P 108 -72.67 -53.86 REMARK 500 THR P 136 71.39 -53.43 REMARK 500 LEU P 150 170.38 -53.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN P 99 PRO P 100 -108.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: RNA REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RNA BINDING SITE REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONCERNING THE APPARENT SEQUENCE DISCREPANCY: THE AUTHORS REMARK 999 USED THE SEQUENCE REPORTED BY ALTSCHUH ET AL., REMARK 999 J. MOL. BIOL. (1987) 193, 693-707 RATHER THAN THAT FOUND IN REMARK 999 SWISS-PROT ENTRY COAT_TMGMV. THE AUTHORS' VIRUS STOCKS REMARK 999 WERE CLOSELY RELATED TO THE ALTSCHUH STOCKS. THE AUTHORS REMARK 999 STATE THAT THE DIFFERENCES ARE NOT PARTICULARLY IMPORTANT REMARK 999 STRUCTURALLY AND WERE TOO SMALL FOR THEIR MAP TO RESOLVE. DBREF 1VTM P 1 158 UNP P03579 COAT_TMGMV 1 158 DBREF 1VTM R 1 3 PDB 1VTM 1VTM 1 3 SEQADV 1VTM GLU P 22 UNP P03579 GLN 22 CONFLICT SEQADV 1VTM SER P 55 UNP P03579 VAL 55 CONFLICT SEQADV 1VTM VAL P 57 UNP P03579 SER 57 CONFLICT SEQADV 1VTM ASN P 97 UNP P03579 ASP 97 CONFLICT SEQRES 1 R 3 G A A SEQRES 1 P 158 PRO TYR THR ILE ASN SER PRO SER GLN PHE VAL TYR LEU SEQRES 2 P 158 SER SER ALA TYR ALA ASP PRO VAL GLU LEU ILE ASN LEU SEQRES 3 P 158 CYS THR ASN ALA LEU GLY ASN GLN PHE GLN THR GLN GLN SEQRES 4 P 158 ALA ARG THR THR VAL GLN GLN GLN PHE ALA ASP ALA TRP SEQRES 5 P 158 LYS PRO SER PRO VAL MET THR VAL ARG PHE PRO ALA SER SEQRES 6 P 158 ASP PHE TYR VAL TYR ARG TYR ASN SER THR LEU ASP PRO SEQRES 7 P 158 LEU ILE THR ALA LEU LEU ASN SER PHE ASP THR ARG ASN SEQRES 8 P 158 ARG ILE ILE GLU VAL ASN ASN GLN PRO ALA PRO ASN THR SEQRES 9 P 158 THR GLU ILE VAL ASN ALA THR GLN ARG VAL ASP ASP ALA SEQRES 10 P 158 THR VAL ALA ILE ARG ALA SER ILE ASN ASN LEU ALA ASN SEQRES 11 P 158 GLU LEU VAL ARG GLY THR GLY MET PHE ASN GLN ALA GLY SEQRES 12 P 158 PHE GLU THR ALA SER GLY LEU VAL TRP THR THR THR PRO SEQRES 13 P 158 ALA THR FORMUL 3 HOH *8(H2 O) HELIX 1 N GLN P 9 SER P 14 1ENDS POORLY DEFINED 6 HELIX 2 LS VAL P 21 LEU P 31 1ENDS POORLY DEFINED 11 HELIX 3 RS THR P 37 TRP P 52 1ENDS POORLY DEFINED 16 HELIX 4 RR ASN P 73 PHE P 87 1ENDS POORLY DEFINED 15 HELIX 5 LR THR P 111 LEU P 132 1ENDS POORLY DEFINED 22 HELIX 6 C ASN P 140 SER P 148 1ENDS POORLY DEFINED 9 SHEET 1 A 3 TYR P 17 ALA P 18 0 SHEET 2 A 3 TYR P 68 TYR P 70 -1 N VAL P 69 O ALA P 18 SHEET 3 A 3 MET P 138 PHE P 139 -1 N PHE P 139 O TYR P 68 SITE 1 RNA 6 ALA P 40 ARG P 90 ARG P 92 ARG P 113 SITE 2 RNA 6 ASP P 116 ARG P 122 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000