data_1VTQ # _entry.id 1VTQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VTQ pdb_00001vtq 10.2210/pdb1vtq/pdb NDB TRNA05 ? ? RCSB RCSB003047 ? ? WWPDB D_1000003047 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-13 2 'Structure model' 1 1 2018-05-30 3 'Structure model' 1 2 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Structure summary' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity 2 2 'Structure model' pdbx_entity_src_syn 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity.pdbx_description' 2 2 'Structure model' '_entity.src_method' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VTQ _pdbx_database_status.recvd_initial_deposition_date 1985-06-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Comarmond, M.B.' 1 'Giege, R.' 2 'Thierry, J.C.' 3 'Moras, D.' 4 'Fischer, J.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Three-Dimensional Structure of Yeast T-RNA-ASP. I. Structure Determination' 'Acta Crystallogr.,Sect.B' 42 272 280 1986 ASBSDK DK 0108-7681 0622 ? ? ? 1 'Anticodon-Anticodon Interaction Induces Conformational Changes in T-RNA. Yeast T-RNA-ASP II, a Model for T-RNA-M-RNA Recognition' Proc.Natl.Acad.Sci.USA 83 932 936 1986 PNASA6 US 0027-8424 0040 ? ? ? 2 'Crystallographic Refinement of Yeast Aspartic Acid Transfer RNA' J.Mol.Biol. 184 119 145 1985 JMOBAK UK 0022-2836 0070 ? ? ? 3 'Crystal Structure of Yeast T-RNA-ASP. Atomic Coordinates' Biochimie 67 597 ? 1985 BICMBE FR 0300-9084 0466 ? ? ? 4 'Loop Stereochemistry and Dynamics in Transfer RNA' J.Biomol.Struct.Dyn. 1 337 355 1983 JBSDD6 US 0739-1102 0646 ? ? ? 5 'Crystal Structure of Yeast T-RNA-ASP' Nature 288 669 674 1980 NATUAS UK 0028-0836 0006 ? ? ? 6 'Yeast Transfer RNA-ASP. A New High-Resolution X-Ray Diffracting Crystal Form of a Transfer RNA' J.Mol.Biol. 115 91 96 1977 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Comarmond, M.B.' 1 ? primary 'Giege, R.' 2 ? primary 'Thierry, J.C.' 3 ? primary 'Moras, D.' 4 ? primary 'Fischer, J.' 5 ? 1 'Moras, D.' 6 ? 1 'Dock, A.-C.' 7 ? 1 'Dumas, P.' 8 ? 1 'Westhof, E.' 9 ? 1 'Romby, P.' 10 ? 1 'Ebel, J.-P.' 11 ? 1 'Giege, R.' 12 ? 2 'Westhof, E.' 13 ? 2 'Dumas, P.' 14 ? 2 'Moras, D.' 15 ? 3 'Dumas, P.' 16 ? 3 'Ebel, J.P.' 17 ? 3 'Giege, R.' 18 ? 3 'Moras, D.' 19 ? 3 'Thierry, J.C.' 20 ? 3 'Westhof, E.' 21 ? 4 'Westhof, E.' 22 ? 4 'Dumas, P.' 23 ? 4 'Moras, D.' 24 ? 5 'Moras, D.' 25 ? 5 'Comarmond, M.B.' 26 ? 5 'Fischer, J.' 27 ? 5 'Weiss, R.' 28 ? 5 'Thierry, J.C.' 29 ? 5 'Ebel, J.P.' 30 ? 5 'Giege, R.' 31 ? 6 'Giege, R.' 32 ? 6 'Moras, D.' 33 ? 6 'Thierry, J.C.' 34 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description T-RNA-ASP _entity.formula_weight 24181.369 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;UCCGUGAUAGUU(PSU)AA(H2U)GG(H2U)CAGAAUGGGCGC(PSU)UGUC(1MG)CGUGCCAGAU(5MC)GGGG (5MU)(PSU)CAAUUCCCCGUCGCGGAGCCA ; _entity_poly.pdbx_seq_one_letter_code_can UCCGUGAUAGUUUAAUGGUCAGAAUGGGCGCUUGUCGCGUGCCAGAUCGGGGUUCAAUUCCCCGUCGCGGAGCCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 C n 1 3 C n 1 4 G n 1 5 U n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 G n 1 11 U n 1 12 U n 1 13 PSU n 1 14 A n 1 15 A n 1 16 H2U n 1 17 G n 1 18 G n 1 19 H2U n 1 20 C n 1 21 A n 1 22 G n 1 23 A n 1 24 A n 1 25 U n 1 26 G n 1 27 G n 1 28 G n 1 29 C n 1 30 G n 1 31 C n 1 32 PSU n 1 33 U n 1 34 G n 1 35 U n 1 36 C n 1 37 1MG n 1 38 C n 1 39 G n 1 40 U n 1 41 G n 1 42 C n 1 43 C n 1 44 A n 1 45 G n 1 46 A n 1 47 U n 1 48 5MC n 1 49 G n 1 50 G n 1 51 G n 1 52 G n 1 53 5MU n 1 54 PSU n 1 55 C n 1 56 A n 1 57 A n 1 58 U n 1 59 U n 1 60 C n 1 61 C n 1 62 C n 1 63 C n 1 64 G n 1 65 U n 1 66 C n 1 67 G n 1 68 C n 1 69 G n 1 70 G n 1 71 A n 1 72 G n 1 73 C n 1 74 C n 1 75 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1MG 'RNA linking' n "1N-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 5MC 'RNA linking' n "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 5MU 'RNA linking' n ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 H2U 'RNA linking' n "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" ? 'C9 H15 N2 O9 P' 326.197 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 U 12 12 12 U U A . n A 1 13 PSU 13 13 13 PSU PSU A . n A 1 14 A 14 14 14 A A A . n A 1 15 A 15 15 15 A A A . n A 1 16 H2U 16 16 16 H2U H2U A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 H2U 19 19 19 H2U H2U A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 A 24 24 24 A A A . n A 1 25 U 25 25 25 U U A . n A 1 26 G 26 26 26 G G A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 G 30 30 30 G G A . n A 1 31 C 31 31 31 C C A . n A 1 32 PSU 32 32 32 PSU PSU A . n A 1 33 U 33 33 33 U U A . n A 1 34 G 34 34 34 G G A . n A 1 35 U 35 35 35 U U A . n A 1 36 C 36 36 36 C C A . n A 1 37 1MG 37 37 37 1MG 1MG A . n A 1 38 C 38 38 38 C C A . n A 1 39 G 39 39 39 G G A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 C 42 42 42 C C A . n A 1 43 C 43 43 43 C C A . n A 1 44 A 44 44 44 A A A . n A 1 45 G 45 45 45 G G A . n A 1 46 A 46 46 46 A A A . n A 1 47 U 47 47 47 U U A . n A 1 48 5MC 48 48 48 5MC 5MC A . n A 1 49 G 49 49 49 G G A . n A 1 50 G 50 50 50 G G A . n A 1 51 G 51 51 51 G G A . n A 1 52 G 52 52 52 G G A . n A 1 53 5MU 53 53 53 5MU 5MU A . n A 1 54 PSU 54 54 54 PSU PSU A . n A 1 55 C 55 55 55 C C A . n A 1 56 A 56 56 56 A A A . n A 1 57 A 57 57 57 A A A . n A 1 58 U 58 58 58 U U A . n A 1 59 U 59 59 59 U U A . n A 1 60 C 60 60 60 C C A . n A 1 61 C 61 61 61 C C A . n A 1 62 C 62 62 62 C C A . n A 1 63 C 63 63 63 C C A . n A 1 64 G 64 64 64 G G A . n A 1 65 U 65 65 65 U U A . n A 1 66 C 66 66 66 C C A . n A 1 67 G 67 67 67 G G A . n A 1 68 C 68 68 68 C C A . n A 1 69 G 69 69 69 G G A . n A 1 70 G 70 70 70 G G A . n A 1 71 A 71 71 71 A A A . n A 1 72 G 72 72 72 G G A . n A 1 73 C 73 73 73 C C A . n A 1 74 C 74 74 74 C C A . n A 1 75 A 75 75 75 A A A . n # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 _software.date ? _software.type ? _software.location ? _software.language ? # _cell.entry_id 1VTQ _cell.length_a 60.300 _cell.length_b 68.000 _cell.length_c 149.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1VTQ _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VTQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 61.18 _exptl_crystal.density_Matthews 3.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1VTQ _refine.ls_number_reflns_obs 4585 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 3.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2350000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;TWO NON-ISOMORPHOUS INDEPENDENT CRYSTAL FORMS, REFERRED TO AS A FORM AND B FORM, HAVE BEEN GROWN AND SOLVED INDEPENDENTLY. THE COORDINATES PRESENTED IN THIS ENTRY ARE FOR THE B FORM. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1602 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1602 _refine_hist.d_res_high 3.000 _refine_hist.d_res_low 10.000 # _database_PDB_matrix.entry_id 1VTQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VTQ _struct.title 'THREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE DETERMINATION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VTQ _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'T-RNA, SINGLE STRAND, LOOPS, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1VTQ _struct_ref.pdbx_db_accession 1VTQ _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VTQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 75 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1VTQ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 75 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 75 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 12 "O3'" ? ? ? 1_555 A PSU 13 P ? ? A U 12 A PSU 13 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale2 covale both ? A PSU 13 "O3'" ? ? ? 1_555 A A 14 P ? ? A PSU 13 A A 14 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale3 covale both ? A A 15 "O3'" ? ? ? 1_555 A H2U 16 P ? ? A A 15 A H2U 16 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale4 covale both ? A H2U 16 "O3'" ? ? ? 1_555 A G 17 P ? ? A H2U 16 A G 17 1_555 ? ? ? ? ? ? ? 1.634 ? ? covale5 covale both ? A G 18 "O3'" ? ? ? 1_555 A H2U 19 P ? ? A G 18 A H2U 19 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale6 covale both ? A H2U 19 "O3'" ? ? ? 1_555 A C 20 P ? ? A H2U 19 A C 20 1_555 ? ? ? ? ? ? ? 1.641 ? ? covale7 covale both ? A C 31 "O3'" ? ? ? 1_555 A PSU 32 P ? ? A C 31 A PSU 32 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale8 covale both ? A PSU 32 "O3'" ? ? ? 1_555 A U 33 P ? ? A PSU 32 A U 33 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale9 covale both ? A C 36 "O3'" ? ? ? 1_555 A 1MG 37 P ? ? A C 36 A 1MG 37 1_555 ? ? ? ? ? ? ? 1.631 ? ? covale10 covale both ? A 1MG 37 "O3'" ? ? ? 1_555 A C 38 P ? ? A 1MG 37 A C 38 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale11 covale both ? A U 47 "O3'" ? ? ? 1_555 A 5MC 48 P ? ? A U 47 A 5MC 48 1_555 ? ? ? ? ? ? ? 1.632 ? ? covale12 covale both ? A 5MC 48 "O3'" ? ? ? 1_555 A G 49 P ? ? A 5MC 48 A G 49 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale13 covale both ? A G 52 "O3'" ? ? ? 1_555 A 5MU 53 P ? ? A G 52 A 5MU 53 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale14 covale both ? A 5MU 53 "O3'" ? ? ? 1_555 A PSU 54 P ? ? A 5MU 53 A PSU 54 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale15 covale both ? A PSU 54 "O3'" ? ? ? 1_555 A C 55 P ? ? A PSU 54 A C 55 1_555 ? ? ? ? ? ? ? 1.613 ? ? hydrog1 hydrog ? ? A U 1 N3 ? ? ? 1_555 A A 71 N1 ? ? A U 1 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 1 O4 ? ? ? 1_555 A A 71 N6 ? ? A U 1 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 2 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 2 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 2 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 69 N1 ? ? A C 3 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 69 O6 ? ? A C 3 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 69 N2 ? ? A C 3 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 4 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 4 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 4 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 67 O6 ? ? A U 5 A G 67 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 67 N1 ? ? A U 5 A G 67 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 6 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 6 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 6 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 7 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 7 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog20 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 23 N7 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog22 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 23 N6 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 A U 25 O2 ? ? A G 10 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 A U 25 N3 ? ? A G 10 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 45 N2 ? ? A G 10 A G 45 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog26 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 24 N1 ? ? A U 11 A A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 24 N6 ? ? A U 11 A A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A PSU 13 N3 ? ? ? 1_555 A G 22 O6 ? ? A PSU 13 A G 22 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog31 hydrog ? ? A PSU 13 O4 ? ? ? 1_555 A G 22 N1 ? ? A PSU 13 A G 22 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog32 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 21 N3 ? ? A A 14 A A 21 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog33 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 47 N3 ? ? A A 15 A U 47 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog34 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 47 O2 ? ? A A 15 A U 47 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog35 hydrog ? ? A G 17 N2 ? ? ? 1_555 A PSU 54 O4 ? ? A G 17 A PSU 54 1_555 ? ? ? ? ? ? 'G-PSU MISPAIR' ? ? ? hydrog36 hydrog ? ? A G 22 N7 ? ? ? 1_555 A A 46 N6 ? ? A G 22 A A 46 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 26 N1 ? ? ? 1_555 A A 44 N1 ? ? A G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog38 hydrog ? ? A G 26 O6 ? ? ? 1_555 A A 44 N6 ? ? A G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog39 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 29 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 29 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 29 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 29 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 29 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 30 N1 ? ? ? 1_555 A U 40 O2 ? ? A G 30 A U 40 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog49 hydrog ? ? A G 30 O6 ? ? ? 1_555 A U 40 N3 ? ? A G 30 A U 40 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog50 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 39 N1 ? ? A C 31 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 39 O6 ? ? A C 31 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 39 N2 ? ? A C 31 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A PSU 32 O4 ? ? ? 1_555 A C 38 N4 ? ? A PSU 32 A C 38 1_555 ? ? ? ? ? ? 'PSU-C MISPAIR' ? ? ? hydrog54 hydrog ? ? A 5MC 48 N3 ? ? ? 1_555 A G 64 N1 ? ? A 5MC 48 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A 5MC 48 N4 ? ? ? 1_555 A G 64 O6 ? ? A 5MC 48 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A 5MC 48 O2 ? ? ? 1_555 A G 64 N2 ? ? A 5MC 48 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 49 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 49 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 49 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 49 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 49 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 49 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 50 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 50 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 50 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 50 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 51 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 51 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 51 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 60 N3 ? ? A G 52 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 52 N2 ? ? ? 1_555 A C 60 O2 ? ? A G 52 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 60 N4 ? ? A G 52 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A 5MU 53 N3 ? ? ? 1_555 A A 57 N7 ? ? A 5MU 53 A A 57 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog70 hydrog ? ? A 5MU 53 O2 ? ? ? 1_555 A A 57 N6 ? ? A 5MU 53 A A 57 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N7 A G 17 ? ? 1_555 "O4'" A C 74 ? ? 5_455 0.94 2 1 "O5'" A G 17 ? ? 1_555 O2 A C 74 ? ? 5_455 1.00 3 1 OP2 A G 17 ? ? 1_555 "O4'" A A 75 ? ? 5_455 1.06 4 1 C8 A G 17 ? ? 1_555 "C1'" A C 74 ? ? 5_455 1.22 5 1 "O4'" A C 60 ? ? 1_555 OP1 A A 75 ? ? 5_455 1.34 6 1 "C4'" A C 60 ? ? 1_555 OP1 A A 75 ? ? 5_455 1.53 7 1 P A G 17 ? ? 1_555 O2 A C 74 ? ? 5_455 1.54 8 1 N7 A G 17 ? ? 1_555 "C1'" A C 74 ? ? 5_455 1.66 9 1 C8 A G 17 ? ? 1_555 "O4'" A C 74 ? ? 5_455 1.70 10 1 OP2 A G 17 ? ? 1_555 "C1'" A A 75 ? ? 5_455 1.75 11 1 OP1 A G 17 ? ? 1_555 "C2'" A C 74 ? ? 5_455 1.78 12 1 N7 A G 17 ? ? 1_555 "C4'" A C 74 ? ? 5_455 1.81 13 1 "C4'" A H2U 16 ? ? 1_555 N3 A A 75 ? ? 5_455 1.89 14 1 P A G 17 ? ? 1_555 "O4'" A A 75 ? ? 5_455 2.00 15 1 "O3'" A H2U 16 ? ? 1_555 N9 A A 75 ? ? 5_455 2.07 16 1 OP1 A G 17 ? ? 1_555 C2 A C 74 ? ? 5_455 2.07 17 1 OP1 A G 17 ? ? 1_555 O2 A C 74 ? ? 5_455 2.12 18 1 OP1 A G 17 ? ? 1_555 N1 A C 74 ? ? 5_455 2.13 19 1 "O4'" A H2U 16 ? ? 1_555 N3 A A 75 ? ? 5_455 2.13 20 1 "C5'" A C 60 ? ? 1_555 OP1 A A 75 ? ? 5_455 2.18 21 1 "O5'" A G 17 ? ? 1_555 C2 A C 74 ? ? 5_455 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A C 73 ? ? "C4'" A C 73 ? ? 1.452 1.508 -0.056 0.007 N 2 1 C2 A C 73 ? ? O2 A C 73 ? ? 1.184 1.240 -0.056 0.009 N 3 1 C4 A C 73 ? ? N4 A C 73 ? ? 1.276 1.335 -0.059 0.009 N 4 1 C2 A C 73 ? ? N3 A C 73 ? ? 1.408 1.353 0.055 0.008 N 5 1 N3 A C 73 ? ? C4 A C 73 ? ? 1.268 1.335 -0.067 0.007 N 6 1 C4 A C 73 ? ? C5 A C 73 ? ? 1.514 1.425 0.089 0.008 N 7 1 C5 A C 73 ? ? C6 A C 73 ? ? 1.426 1.339 0.087 0.008 N 8 1 "O3'" A C 73 ? ? P A C 74 ? ? 1.521 1.607 -0.086 0.012 Y 9 1 "C5'" A C 74 ? ? "C4'" A C 74 ? ? 1.463 1.508 -0.045 0.007 N 10 1 "O4'" A C 74 ? ? "C4'" A C 74 ? ? 1.529 1.454 0.075 0.010 N 11 1 C4 A C 74 ? ? N4 A C 74 ? ? 1.397 1.335 0.062 0.009 N 12 1 N1 A C 74 ? ? C6 A C 74 ? ? 1.304 1.367 -0.063 0.006 N 13 1 "O3'" A C 74 ? ? P A A 75 ? ? 1.522 1.607 -0.085 0.012 Y 14 1 "O5'" A A 75 ? ? "C5'" A A 75 ? ? 1.364 1.420 -0.056 0.009 N 15 1 "C2'" A A 75 ? ? "C1'" A A 75 ? ? 1.446 1.526 -0.080 0.008 N 16 1 "O4'" A A 75 ? ? "C4'" A A 75 ? ? 1.529 1.454 0.075 0.010 N 17 1 "C2'" A A 75 ? ? "O2'" A A 75 ? ? 1.506 1.420 0.086 0.010 N 18 1 N3 A A 75 ? ? C4 A A 75 ? ? 1.436 1.344 0.092 0.006 N 19 1 N7 A A 75 ? ? C8 A A 75 ? ? 1.242 1.311 -0.069 0.007 N 20 1 N9 A A 75 ? ? C4 A A 75 ? ? 1.313 1.374 -0.061 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A U 1 ? ? C2 A U 1 ? ? N3 A U 1 ? ? 118.52 114.90 3.62 0.60 N 2 1 C2 A U 1 ? ? N3 A U 1 ? ? C4 A U 1 ? ? 122.23 127.00 -4.77 0.60 N 3 1 N3 A U 1 ? ? C4 A U 1 ? ? C5 A U 1 ? ? 118.96 114.60 4.36 0.60 N 4 1 "C3'" A U 1 ? ? "O3'" A U 1 ? ? P A C 2 ? ? 137.86 119.70 18.16 1.20 Y 5 1 OP1 A C 2 ? ? P A C 2 ? ? OP2 A C 2 ? ? 109.09 119.60 -10.51 1.50 N 6 1 "O5'" A C 3 ? ? "C5'" A C 3 ? ? "C4'" A C 3 ? ? 104.52 109.40 -4.88 0.80 N 7 1 OP1 A G 4 ? ? P A G 4 ? ? OP2 A G 4 ? ? 109.52 119.60 -10.08 1.50 N 8 1 C5 A G 4 ? ? C6 A G 4 ? ? N1 A G 4 ? ? 114.70 111.50 3.20 0.50 N 9 1 N1 A U 5 ? ? C2 A U 5 ? ? N3 A U 5 ? ? 119.73 114.90 4.83 0.60 N 10 1 C2 A U 5 ? ? N3 A U 5 ? ? C4 A U 5 ? ? 120.25 127.00 -6.75 0.60 N 11 1 N3 A U 5 ? ? C4 A U 5 ? ? C5 A U 5 ? ? 120.14 114.60 5.54 0.60 N 12 1 C5 A G 6 ? ? C6 A G 6 ? ? N1 A G 6 ? ? 114.55 111.50 3.05 0.50 N 13 1 "O4'" A A 7 ? ? "C1'" A A 7 ? ? N9 A A 7 ? ? 114.80 108.50 6.30 0.70 N 14 1 "O5'" A U 8 ? ? "C5'" A U 8 ? ? "C4'" A U 8 ? ? 104.33 109.40 -5.07 0.80 N 15 1 P A U 8 ? ? "O5'" A U 8 ? ? "C5'" A U 8 ? ? 110.13 120.90 -10.77 1.60 N 16 1 C2 A U 8 ? ? N3 A U 8 ? ? C4 A U 8 ? ? 122.50 127.00 -4.50 0.60 N 17 1 N3 A U 8 ? ? C4 A U 8 ? ? C5 A U 8 ? ? 118.96 114.60 4.36 0.60 N 18 1 "O5'" A A 9 ? ? "C5'" A A 9 ? ? "C4'" A A 9 ? ? 103.65 109.40 -5.75 0.80 N 19 1 N1 A A 9 ? ? C2 A A 9 ? ? N3 A A 9 ? ? 126.15 129.30 -3.15 0.50 N 20 1 "O5'" A G 10 ? ? "C5'" A G 10 ? ? "C4'" A G 10 ? ? 101.00 109.40 -8.40 0.80 N 21 1 "O5'" A U 11 ? ? "C5'" A U 11 ? ? "C4'" A U 11 ? ? 97.40 109.40 -12.00 0.80 N 22 1 C2 A U 11 ? ? N3 A U 11 ? ? C4 A U 11 ? ? 123.06 127.00 -3.94 0.60 N 23 1 N3 A U 11 ? ? C4 A U 11 ? ? C5 A U 11 ? ? 118.88 114.60 4.28 0.60 N 24 1 C2 A U 12 ? ? N3 A U 12 ? ? C4 A U 12 ? ? 122.66 127.00 -4.34 0.60 N 25 1 N3 A U 12 ? ? C4 A U 12 ? ? C5 A U 12 ? ? 119.16 114.60 4.56 0.60 N 26 1 N1 A A 15 ? ? C2 A A 15 ? ? N3 A A 15 ? ? 125.98 129.30 -3.32 0.50 N 27 1 "C3'" A H2U 16 ? ? "O3'" A H2U 16 ? ? P A G 17 ? ? 110.02 119.70 -9.68 1.20 Y 28 1 "O5'" A G 17 ? ? "C5'" A G 17 ? ? "C4'" A G 17 ? ? 102.32 109.40 -7.08 0.80 N 29 1 OP1 A G 18 ? ? P A G 18 ? ? OP2 A G 18 ? ? 110.46 119.60 -9.14 1.50 N 30 1 "C3'" A G 18 ? ? "O3'" A G 18 ? ? P A H2U 19 ? ? 132.50 119.70 12.80 1.20 Y 31 1 N3 A C 20 ? ? C4 A C 20 ? ? C5 A C 20 ? ? 119.45 121.90 -2.45 0.40 N 32 1 "C3'" A A 21 ? ? "O3'" A A 21 ? ? P A G 22 ? ? 127.74 119.70 8.04 1.20 Y 33 1 OP1 A G 22 ? ? P A G 22 ? ? OP2 A G 22 ? ? 109.63 119.60 -9.97 1.50 N 34 1 "O5'" A G 22 ? ? "C5'" A G 22 ? ? "C4'" A G 22 ? ? 103.94 109.40 -5.46 0.80 N 35 1 C6 A A 23 ? ? N1 A A 23 ? ? C2 A A 23 ? ? 122.34 118.60 3.74 0.60 N 36 1 N1 A A 23 ? ? C2 A A 23 ? ? N3 A A 23 ? ? 125.88 129.30 -3.42 0.50 N 37 1 C5 A A 23 ? ? C6 A A 23 ? ? N1 A A 23 ? ? 114.60 117.70 -3.10 0.50 N 38 1 "O4'" A A 24 ? ? "C1'" A A 24 ? ? N9 A A 24 ? ? 112.94 108.50 4.44 0.70 N 39 1 C6 A A 24 ? ? N1 A A 24 ? ? C2 A A 24 ? ? 122.74 118.60 4.14 0.60 N 40 1 N1 A A 24 ? ? C2 A A 24 ? ? N3 A A 24 ? ? 126.06 129.30 -3.24 0.50 N 41 1 C5 A A 24 ? ? C6 A A 24 ? ? N1 A A 24 ? ? 114.47 117.70 -3.23 0.50 N 42 1 "O5'" A U 25 ? ? "C5'" A U 25 ? ? "C4'" A U 25 ? ? 104.28 109.40 -5.12 0.80 N 43 1 C2 A U 25 ? ? N3 A U 25 ? ? C4 A U 25 ? ? 123.06 127.00 -3.94 0.60 N 44 1 N3 A U 25 ? ? C4 A U 25 ? ? C5 A U 25 ? ? 118.60 114.60 4.00 0.60 N 45 1 "O4'" A G 26 ? ? "C1'" A G 26 ? ? N9 A G 26 ? ? 113.35 108.50 4.85 0.70 N 46 1 C5 A G 26 ? ? C6 A G 26 ? ? N1 A G 26 ? ? 114.52 111.50 3.02 0.50 N 47 1 "C3'" A G 27 ? ? "O3'" A G 27 ? ? P A G 28 ? ? 112.23 119.70 -7.47 1.20 Y 48 1 "O5'" A G 28 ? ? P A G 28 ? ? OP2 A G 28 ? ? 118.70 110.70 8.00 1.20 N 49 1 "O5'" A G 28 ? ? "C5'" A G 28 ? ? "C4'" A G 28 ? ? 102.26 109.40 -7.14 0.80 N 50 1 "O4'" A G 28 ? ? "C1'" A G 28 ? ? N9 A G 28 ? ? 102.91 108.20 -5.29 0.80 N 51 1 "O5'" A C 29 ? ? "C5'" A C 29 ? ? "C4'" A C 29 ? ? 104.07 109.40 -5.33 0.80 N 52 1 N3 A C 29 ? ? C4 A C 29 ? ? C5 A C 29 ? ? 119.20 121.90 -2.70 0.40 N 53 1 "O4'" A C 31 ? ? "C1'" A C 31 ? ? N1 A C 31 ? ? 114.64 108.50 6.14 0.70 N 54 1 "C3'" A PSU 32 ? ? "O3'" A PSU 32 ? ? P A U 33 ? ? 133.02 119.70 13.32 1.20 Y 55 1 C2 A U 33 ? ? N3 A U 33 ? ? C4 A U 33 ? ? 122.33 127.00 -4.67 0.60 N 56 1 N3 A U 33 ? ? C4 A U 33 ? ? C5 A U 33 ? ? 118.91 114.60 4.31 0.60 N 57 1 "C3'" A U 33 ? ? "O3'" A U 33 ? ? P A G 34 ? ? 129.34 119.70 9.64 1.20 Y 58 1 OP1 A G 34 ? ? P A G 34 ? ? OP2 A G 34 ? ? 110.57 119.60 -9.03 1.50 N 59 1 "O4'" A G 34 ? ? "C1'" A G 34 ? ? N9 A G 34 ? ? 114.86 108.50 6.36 0.70 N 60 1 C5 A G 34 ? ? C6 A G 34 ? ? N1 A G 34 ? ? 114.79 111.50 3.29 0.50 N 61 1 "O4'" A U 35 ? ? "C1'" A U 35 ? ? N1 A U 35 ? ? 113.26 108.50 4.76 0.70 N 62 1 C2 A U 35 ? ? N3 A U 35 ? ? C4 A U 35 ? ? 121.73 127.00 -5.27 0.60 N 63 1 N3 A U 35 ? ? C4 A U 35 ? ? C5 A U 35 ? ? 119.33 114.60 4.73 0.60 N 64 1 "C3'" A U 35 ? ? "O3'" A U 35 ? ? P A C 36 ? ? 128.13 119.70 8.43 1.20 Y 65 1 "O5'" A C 36 ? ? "C5'" A C 36 ? ? "C4'" A C 36 ? ? 103.31 109.40 -6.09 0.80 N 66 1 "C3'" A C 36 ? ? "O3'" A C 36 ? ? P A 1MG 37 ? ? 111.93 119.70 -7.77 1.20 Y 67 1 "O5'" A C 38 ? ? "C5'" A C 38 ? ? "C4'" A C 38 ? ? 101.84 109.40 -7.56 0.80 N 68 1 "O4'" A U 40 ? ? "C1'" A U 40 ? ? N1 A U 40 ? ? 113.13 108.50 4.63 0.70 N 69 1 C2 A U 40 ? ? N3 A U 40 ? ? C4 A U 40 ? ? 122.10 127.00 -4.90 0.60 N 70 1 N3 A U 40 ? ? C4 A U 40 ? ? C5 A U 40 ? ? 119.24 114.60 4.64 0.60 N 71 1 C5 A G 41 ? ? C6 A G 41 ? ? N1 A G 41 ? ? 114.74 111.50 3.24 0.50 N 72 1 "O5'" A C 42 ? ? "C5'" A C 42 ? ? "C4'" A C 42 ? ? 102.62 109.40 -6.78 0.80 N 73 1 N1 A C 42 ? ? "C1'" A C 42 ? ? "C2'" A C 42 ? ? 105.17 112.00 -6.83 1.10 N 74 1 "O5'" A C 43 ? ? "C5'" A C 43 ? ? "C4'" A C 43 ? ? 104.06 109.40 -5.34 0.80 N 75 1 N9 A G 45 ? ? "C1'" A G 45 ? ? "C2'" A G 45 ? ? 105.08 112.00 -6.92 1.10 N 76 1 "O4'" A G 45 ? ? "C1'" A G 45 ? ? N9 A G 45 ? ? 118.38 108.50 9.88 0.70 N 77 1 C5 A G 45 ? ? C6 A G 45 ? ? N1 A G 45 ? ? 114.99 111.50 3.49 0.50 N 78 1 N1 A A 46 ? ? C2 A A 46 ? ? N3 A A 46 ? ? 126.19 129.30 -3.11 0.50 N 79 1 OP1 A U 47 ? ? P A U 47 ? ? OP2 A U 47 ? ? 107.51 119.60 -12.09 1.50 N 80 1 C2 A U 47 ? ? N3 A U 47 ? ? C4 A U 47 ? ? 121.62 127.00 -5.38 0.60 N 81 1 N3 A U 47 ? ? C4 A U 47 ? ? C5 A U 47 ? ? 119.56 114.60 4.96 0.60 N 82 1 "C3'" A U 47 ? ? "O3'" A U 47 ? ? P A 5MC 48 ? ? 112.36 119.70 -7.34 1.20 Y 83 1 "O5'" A G 49 ? ? "C5'" A G 49 ? ? "C4'" A G 49 ? ? 102.51 109.40 -6.89 0.80 N 84 1 "O5'" A G 50 ? ? "C5'" A G 50 ? ? "C4'" A G 50 ? ? 103.52 109.40 -5.88 0.80 N 85 1 C5 A G 50 ? ? C6 A G 50 ? ? N1 A G 50 ? ? 114.57 111.50 3.07 0.50 N 86 1 "O5'" A G 51 ? ? P A G 51 ? ? OP2 A G 51 ? ? 119.52 110.70 8.82 1.20 N 87 1 N1 A C 55 ? ? "C1'" A C 55 ? ? "C2'" A C 55 ? ? 105.25 112.00 -6.75 1.10 N 88 1 "O4'" A C 55 ? ? "C1'" A C 55 ? ? N1 A C 55 ? ? 115.35 108.50 6.85 0.70 N 89 1 N1 A A 56 ? ? C2 A A 56 ? ? N3 A A 56 ? ? 126.17 129.30 -3.13 0.50 N 90 1 "C3'" A A 56 ? ? "O3'" A A 56 ? ? P A A 57 ? ? 134.32 119.70 14.62 1.20 Y 91 1 N1 A A 57 ? ? C2 A A 57 ? ? N3 A A 57 ? ? 126.21 129.30 -3.09 0.50 N 92 1 C5 A A 57 ? ? C6 A A 57 ? ? N1 A A 57 ? ? 114.40 117.70 -3.30 0.50 N 93 1 C2 A U 58 ? ? N3 A U 58 ? ? C4 A U 58 ? ? 121.45 127.00 -5.55 0.60 N 94 1 N3 A U 58 ? ? C4 A U 58 ? ? C5 A U 58 ? ? 119.88 114.60 5.28 0.60 N 95 1 "O4'" A U 59 ? ? "C1'" A U 59 ? ? N1 A U 59 ? ? 113.44 108.50 4.94 0.70 N 96 1 N1 A U 59 ? ? C2 A U 59 ? ? N3 A U 59 ? ? 118.63 114.90 3.73 0.60 N 97 1 C2 A U 59 ? ? N3 A U 59 ? ? C4 A U 59 ? ? 122.15 127.00 -4.85 0.60 N 98 1 N3 A U 59 ? ? C4 A U 59 ? ? C5 A U 59 ? ? 118.77 114.60 4.17 0.60 N 99 1 "C3'" A U 59 ? ? "O3'" A U 59 ? ? P A C 60 ? ? 107.84 119.70 -11.86 1.20 Y 100 1 OP1 A C 61 ? ? P A C 61 ? ? OP2 A C 61 ? ? 110.36 119.60 -9.24 1.50 N 101 1 "O4'" A C 61 ? ? "C1'" A C 61 ? ? N1 A C 61 ? ? 113.37 108.50 4.87 0.70 N 102 1 OP1 A C 62 ? ? P A C 62 ? ? OP2 A C 62 ? ? 109.51 119.60 -10.09 1.50 N 103 1 "O5'" A C 62 ? ? P A C 62 ? ? OP2 A C 62 ? ? 119.26 110.70 8.56 1.20 N 104 1 N3 A C 62 ? ? C4 A C 62 ? ? C5 A C 62 ? ? 118.91 121.90 -2.99 0.40 N 105 1 OP1 A C 63 ? ? P A C 63 ? ? OP2 A C 63 ? ? 109.13 119.60 -10.47 1.50 N 106 1 "O5'" A C 63 ? ? "C5'" A C 63 ? ? "C4'" A C 63 ? ? 103.09 109.40 -6.31 0.80 N 107 1 "C3'" A C 63 ? ? "O3'" A C 63 ? ? P A G 64 ? ? 110.96 119.70 -8.74 1.20 Y 108 1 OP1 A U 65 ? ? P A U 65 ? ? OP2 A U 65 ? ? 109.20 119.60 -10.40 1.50 N 109 1 "O5'" A U 65 ? ? "C5'" A U 65 ? ? "C4'" A U 65 ? ? 102.59 109.40 -6.81 0.80 N 110 1 C2 A U 65 ? ? N3 A U 65 ? ? C4 A U 65 ? ? 122.39 127.00 -4.61 0.60 N 111 1 N3 A U 65 ? ? C4 A U 65 ? ? C5 A U 65 ? ? 118.96 114.60 4.36 0.60 N 112 1 C2 A C 66 ? ? N3 A C 66 ? ? C4 A C 66 ? ? 123.15 119.90 3.25 0.50 N 113 1 N3 A C 66 ? ? C4 A C 66 ? ? C5 A C 66 ? ? 119.15 121.90 -2.75 0.40 N 114 1 "O5'" A G 67 ? ? "C5'" A G 67 ? ? "C4'" A G 67 ? ? 102.72 109.40 -6.68 0.80 N 115 1 "C3'" A G 67 ? ? "O3'" A G 67 ? ? P A C 68 ? ? 131.03 119.70 11.33 1.20 Y 116 1 "O5'" A G 69 ? ? "C5'" A G 69 ? ? "C4'" A G 69 ? ? 103.84 109.40 -5.56 0.80 N 117 1 "O5'" A A 71 ? ? "C5'" A A 71 ? ? "C4'" A A 71 ? ? 104.27 109.40 -5.13 0.80 N 118 1 N1 A A 71 ? ? C2 A A 71 ? ? N3 A A 71 ? ? 126.07 129.30 -3.23 0.50 N 119 1 C5 A G 72 ? ? C6 A G 72 ? ? N1 A G 72 ? ? 114.54 111.50 3.04 0.50 N 120 1 OP1 A C 73 ? ? P A C 73 ? ? OP2 A C 73 ? ? 109.77 119.60 -9.83 1.50 N 121 1 C4 A C 73 ? ? C5 A C 73 ? ? C6 A C 73 ? ? 112.69 117.40 -4.71 0.50 N 122 1 "O4'" A C 74 ? ? "C1'" A C 74 ? ? N1 A C 74 ? ? 103.05 108.20 -5.15 0.80 N 123 1 C2 A C 74 ? ? N3 A C 74 ? ? C4 A C 74 ? ? 123.50 119.90 3.60 0.50 N 124 1 N1 A A 75 ? ? C2 A A 75 ? ? N3 A A 75 ? ? 132.95 129.30 3.65 0.50 N 125 1 N9 A A 75 ? ? C4 A A 75 ? ? C5 A A 75 ? ? 109.00 105.80 3.20 0.40 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A PSU 13 A PSU 13 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 2 A H2U 16 A H2U 16 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 3 A H2U 19 A H2U 19 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 4 A PSU 32 A PSU 32 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 5 A 1MG 37 A 1MG 37 ? G "1N-METHYLGUANOSINE-5'-MONOPHOSPHATE" 6 A 5MC 48 A 5MC 48 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" 7 A 5MU 53 A 5MU 53 ? U ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; 8 A PSU 54 A PSU 54 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1MG P P N N 1 1MG OP1 O N N 2 1MG OP2 O N N 3 1MG OP3 O N N 4 1MG "O5'" O N N 5 1MG "C5'" C N N 6 1MG "C4'" C N R 7 1MG "O4'" O N N 8 1MG "C3'" C N S 9 1MG "O3'" O N N 10 1MG "C2'" C N R 11 1MG "O2'" O N N 12 1MG "C1'" C N R 13 1MG N9 N Y N 14 1MG C8 C Y N 15 1MG N7 N Y N 16 1MG C5 C Y N 17 1MG C6 C N N 18 1MG O6 O N N 19 1MG N1 N N N 20 1MG CM1 C N N 21 1MG C2 C N N 22 1MG N2 N N N 23 1MG N3 N N N 24 1MG C4 C Y N 25 1MG HOP2 H N N 26 1MG HOP3 H N N 27 1MG "H5'" H N N 28 1MG "H5''" H N N 29 1MG "H4'" H N N 30 1MG "H3'" H N N 31 1MG "HO3'" H N N 32 1MG "H2'" H N N 33 1MG "HO2'" H N N 34 1MG "H1'" H N N 35 1MG H8 H N N 36 1MG HM11 H N N 37 1MG HM12 H N N 38 1MG HM13 H N N 39 1MG HN21 H N N 40 1MG HN22 H N N 41 5MC P P N N 42 5MC OP1 O N N 43 5MC OP2 O N N 44 5MC OP3 O N N 45 5MC "O5'" O N N 46 5MC "C5'" C N N 47 5MC "C4'" C N R 48 5MC "O4'" O N N 49 5MC "C3'" C N S 50 5MC "O3'" O N N 51 5MC "C2'" C N R 52 5MC "O2'" O N N 53 5MC "C1'" C N R 54 5MC N1 N N N 55 5MC C2 C N N 56 5MC O2 O N N 57 5MC N3 N N N 58 5MC C4 C N N 59 5MC N4 N N N 60 5MC C5 C N N 61 5MC C6 C N N 62 5MC CM5 C N N 63 5MC HOP2 H N N 64 5MC HOP3 H N N 65 5MC "H5'" H N N 66 5MC "H5''" H N N 67 5MC "H4'" H N N 68 5MC "H3'" H N N 69 5MC "HO3'" H N N 70 5MC "H2'" H N N 71 5MC "HO2'" H N N 72 5MC "H1'" H N N 73 5MC HN41 H N N 74 5MC HN42 H N N 75 5MC H6 H N N 76 5MC HM51 H N N 77 5MC HM52 H N N 78 5MC HM53 H N N 79 5MU N1 N N N 80 5MU C2 C N N 81 5MU N3 N N N 82 5MU C4 C N N 83 5MU C5 C N N 84 5MU C5M C N N 85 5MU C6 C N N 86 5MU O2 O N N 87 5MU O4 O N N 88 5MU "C1'" C N R 89 5MU "C2'" C N R 90 5MU "O2'" O N N 91 5MU "C3'" C N S 92 5MU "C4'" C N R 93 5MU "O3'" O N N 94 5MU "O4'" O N N 95 5MU "C5'" C N N 96 5MU "O5'" O N N 97 5MU P P N N 98 5MU OP1 O N N 99 5MU OP2 O N N 100 5MU OP3 O N N 101 5MU HN3 H N N 102 5MU H71 H N N 103 5MU H72 H N N 104 5MU H73 H N N 105 5MU H6 H N N 106 5MU "H1'" H N N 107 5MU "H2'" H N N 108 5MU "HO2'" H N N 109 5MU "H3'" H N N 110 5MU "H4'" H N N 111 5MU "HO3'" H N N 112 5MU "H5'" H N N 113 5MU "H5''" H N N 114 5MU HOP2 H N N 115 5MU HOP3 H N N 116 A OP3 O N N 117 A P P N N 118 A OP1 O N N 119 A OP2 O N N 120 A "O5'" O N N 121 A "C5'" C N N 122 A "C4'" C N R 123 A "O4'" O N N 124 A "C3'" C N S 125 A "O3'" O N N 126 A "C2'" C N R 127 A "O2'" O N N 128 A "C1'" C N R 129 A N9 N Y N 130 A C8 C Y N 131 A N7 N Y N 132 A C5 C Y N 133 A C6 C Y N 134 A N6 N N N 135 A N1 N Y N 136 A C2 C Y N 137 A N3 N Y N 138 A C4 C Y N 139 A HOP3 H N N 140 A HOP2 H N N 141 A "H5'" H N N 142 A "H5''" H N N 143 A "H4'" H N N 144 A "H3'" H N N 145 A "HO3'" H N N 146 A "H2'" H N N 147 A "HO2'" H N N 148 A "H1'" H N N 149 A H8 H N N 150 A H61 H N N 151 A H62 H N N 152 A H2 H N N 153 C OP3 O N N 154 C P P N N 155 C OP1 O N N 156 C OP2 O N N 157 C "O5'" O N N 158 C "C5'" C N N 159 C "C4'" C N R 160 C "O4'" O N N 161 C "C3'" C N S 162 C "O3'" O N N 163 C "C2'" C N R 164 C "O2'" O N N 165 C "C1'" C N R 166 C N1 N N N 167 C C2 C N N 168 C O2 O N N 169 C N3 N N N 170 C C4 C N N 171 C N4 N N N 172 C C5 C N N 173 C C6 C N N 174 C HOP3 H N N 175 C HOP2 H N N 176 C "H5'" H N N 177 C "H5''" H N N 178 C "H4'" H N N 179 C "H3'" H N N 180 C "HO3'" H N N 181 C "H2'" H N N 182 C "HO2'" H N N 183 C "H1'" H N N 184 C H41 H N N 185 C H42 H N N 186 C H5 H N N 187 C H6 H N N 188 G OP3 O N N 189 G P P N N 190 G OP1 O N N 191 G OP2 O N N 192 G "O5'" O N N 193 G "C5'" C N N 194 G "C4'" C N R 195 G "O4'" O N N 196 G "C3'" C N S 197 G "O3'" O N N 198 G "C2'" C N R 199 G "O2'" O N N 200 G "C1'" C N R 201 G N9 N Y N 202 G C8 C Y N 203 G N7 N Y N 204 G C5 C Y N 205 G C6 C N N 206 G O6 O N N 207 G N1 N N N 208 G C2 C N N 209 G N2 N N N 210 G N3 N N N 211 G C4 C Y N 212 G HOP3 H N N 213 G HOP2 H N N 214 G "H5'" H N N 215 G "H5''" H N N 216 G "H4'" H N N 217 G "H3'" H N N 218 G "HO3'" H N N 219 G "H2'" H N N 220 G "HO2'" H N N 221 G "H1'" H N N 222 G H8 H N N 223 G H1 H N N 224 G H21 H N N 225 G H22 H N N 226 H2U P P N N 227 H2U OP1 O N N 228 H2U OP2 O N N 229 H2U OP3 O N N 230 H2U "O5'" O N N 231 H2U "C5'" C N N 232 H2U "C4'" C N R 233 H2U "O4'" O N N 234 H2U "C3'" C N S 235 H2U "O3'" O N N 236 H2U "C1'" C N R 237 H2U "C2'" C N R 238 H2U "O2'" O N N 239 H2U N1 N N N 240 H2U C2 C N N 241 H2U O2 O N N 242 H2U N3 N N N 243 H2U C4 C N N 244 H2U O4 O N N 245 H2U C5 C N N 246 H2U C6 C N N 247 H2U HOP2 H N N 248 H2U HOP3 H N N 249 H2U "H5'" H N N 250 H2U "H5''" H N N 251 H2U "H4'" H N N 252 H2U "H3'" H N N 253 H2U "HO3'" H N N 254 H2U "H1'" H N N 255 H2U "H2'" H N N 256 H2U "HO2'" H N N 257 H2U HN3 H N N 258 H2U H51 H N N 259 H2U H52 H N N 260 H2U H61 H N N 261 H2U H62 H N N 262 PSU N1 N N N 263 PSU C2 C N N 264 PSU N3 N N N 265 PSU C4 C N N 266 PSU C5 C N N 267 PSU C6 C N N 268 PSU O2 O N N 269 PSU O4 O N N 270 PSU "C1'" C N S 271 PSU "C2'" C N R 272 PSU "O2'" O N N 273 PSU "C3'" C N S 274 PSU "C4'" C N R 275 PSU "O3'" O N N 276 PSU "O4'" O N N 277 PSU "C5'" C N N 278 PSU "O5'" O N N 279 PSU P P N N 280 PSU OP1 O N N 281 PSU OP2 O N N 282 PSU OP3 O N N 283 PSU HN1 H N N 284 PSU HN3 H N N 285 PSU H6 H N N 286 PSU "H1'" H N N 287 PSU "H2'" H N N 288 PSU "HO2'" H N N 289 PSU "H3'" H N N 290 PSU "H4'" H N N 291 PSU "HO3'" H N N 292 PSU "H5'" H N N 293 PSU "H5''" H N N 294 PSU HOP2 H N N 295 PSU HOP3 H N N 296 U OP3 O N N 297 U P P N N 298 U OP1 O N N 299 U OP2 O N N 300 U "O5'" O N N 301 U "C5'" C N N 302 U "C4'" C N R 303 U "O4'" O N N 304 U "C3'" C N S 305 U "O3'" O N N 306 U "C2'" C N R 307 U "O2'" O N N 308 U "C1'" C N R 309 U N1 N N N 310 U C2 C N N 311 U O2 O N N 312 U N3 N N N 313 U C4 C N N 314 U O4 O N N 315 U C5 C N N 316 U C6 C N N 317 U HOP3 H N N 318 U HOP2 H N N 319 U "H5'" H N N 320 U "H5''" H N N 321 U "H4'" H N N 322 U "H3'" H N N 323 U "HO3'" H N N 324 U "H2'" H N N 325 U "HO2'" H N N 326 U "H1'" H N N 327 U H3 H N N 328 U H5 H N N 329 U H6 H N N 330 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1MG P OP1 doub N N 1 1MG P OP2 sing N N 2 1MG P OP3 sing N N 3 1MG P "O5'" sing N N 4 1MG OP2 HOP2 sing N N 5 1MG OP3 HOP3 sing N N 6 1MG "O5'" "C5'" sing N N 7 1MG "C5'" "C4'" sing N N 8 1MG "C5'" "H5'" sing N N 9 1MG "C5'" "H5''" sing N N 10 1MG "C4'" "O4'" sing N N 11 1MG "C4'" "C3'" sing N N 12 1MG "C4'" "H4'" sing N N 13 1MG "O4'" "C1'" sing N N 14 1MG "C3'" "O3'" sing N N 15 1MG "C3'" "C2'" sing N N 16 1MG "C3'" "H3'" sing N N 17 1MG "O3'" "HO3'" sing N N 18 1MG "C2'" "O2'" sing N N 19 1MG "C2'" "C1'" sing N N 20 1MG "C2'" "H2'" sing N N 21 1MG "O2'" "HO2'" sing N N 22 1MG "C1'" N9 sing N N 23 1MG "C1'" "H1'" sing N N 24 1MG N9 C8 sing Y N 25 1MG N9 C4 sing Y N 26 1MG C8 N7 doub Y N 27 1MG C8 H8 sing N N 28 1MG N7 C5 sing Y N 29 1MG C5 C6 sing N N 30 1MG C5 C4 doub Y N 31 1MG C6 O6 doub N N 32 1MG C6 N1 sing N N 33 1MG N1 CM1 sing N N 34 1MG N1 C2 sing N N 35 1MG CM1 HM11 sing N N 36 1MG CM1 HM12 sing N N 37 1MG CM1 HM13 sing N N 38 1MG C2 N2 sing N N 39 1MG C2 N3 doub N N 40 1MG N2 HN21 sing N N 41 1MG N2 HN22 sing N N 42 1MG N3 C4 sing N N 43 5MC P OP1 doub N N 44 5MC P OP2 sing N N 45 5MC P OP3 sing N N 46 5MC P "O5'" sing N N 47 5MC OP2 HOP2 sing N N 48 5MC OP3 HOP3 sing N N 49 5MC "O5'" "C5'" sing N N 50 5MC "C5'" "C4'" sing N N 51 5MC "C5'" "H5'" sing N N 52 5MC "C5'" "H5''" sing N N 53 5MC "C4'" "O4'" sing N N 54 5MC "C4'" "C3'" sing N N 55 5MC "C4'" "H4'" sing N N 56 5MC "O4'" "C1'" sing N N 57 5MC "C3'" "O3'" sing N N 58 5MC "C3'" "C2'" sing N N 59 5MC "C3'" "H3'" sing N N 60 5MC "O3'" "HO3'" sing N N 61 5MC "C2'" "O2'" sing N N 62 5MC "C2'" "C1'" sing N N 63 5MC "C2'" "H2'" sing N N 64 5MC "O2'" "HO2'" sing N N 65 5MC "C1'" N1 sing N N 66 5MC "C1'" "H1'" sing N N 67 5MC N1 C2 sing N N 68 5MC N1 C6 sing N N 69 5MC C2 O2 doub N N 70 5MC C2 N3 sing N N 71 5MC N3 C4 doub N N 72 5MC C4 N4 sing N N 73 5MC C4 C5 sing N N 74 5MC N4 HN41 sing N N 75 5MC N4 HN42 sing N N 76 5MC C5 C6 doub N N 77 5MC C5 CM5 sing N N 78 5MC C6 H6 sing N N 79 5MC CM5 HM51 sing N N 80 5MC CM5 HM52 sing N N 81 5MC CM5 HM53 sing N N 82 5MU N1 C2 sing N N 83 5MU N1 C6 sing N N 84 5MU N1 "C1'" sing N N 85 5MU C2 N3 sing N N 86 5MU C2 O2 doub N N 87 5MU N3 C4 sing N N 88 5MU N3 HN3 sing N N 89 5MU C4 C5 sing N N 90 5MU C4 O4 doub N N 91 5MU C5 C5M sing N N 92 5MU C5 C6 doub N N 93 5MU C5M H71 sing N N 94 5MU C5M H72 sing N N 95 5MU C5M H73 sing N N 96 5MU C6 H6 sing N N 97 5MU "C1'" "C2'" sing N N 98 5MU "C1'" "O4'" sing N N 99 5MU "C1'" "H1'" sing N N 100 5MU "C2'" "O2'" sing N N 101 5MU "C2'" "C3'" sing N N 102 5MU "C2'" "H2'" sing N N 103 5MU "O2'" "HO2'" sing N N 104 5MU "C3'" "C4'" sing N N 105 5MU "C3'" "O3'" sing N N 106 5MU "C3'" "H3'" sing N N 107 5MU "C4'" "O4'" sing N N 108 5MU "C4'" "C5'" sing N N 109 5MU "C4'" "H4'" sing N N 110 5MU "O3'" "HO3'" sing N N 111 5MU "C5'" "O5'" sing N N 112 5MU "C5'" "H5'" sing N N 113 5MU "C5'" "H5''" sing N N 114 5MU "O5'" P sing N N 115 5MU P OP1 doub N N 116 5MU P OP2 sing N N 117 5MU P OP3 sing N N 118 5MU OP2 HOP2 sing N N 119 5MU OP3 HOP3 sing N N 120 A OP3 P sing N N 121 A OP3 HOP3 sing N N 122 A P OP1 doub N N 123 A P OP2 sing N N 124 A P "O5'" sing N N 125 A OP2 HOP2 sing N N 126 A "O5'" "C5'" sing N N 127 A "C5'" "C4'" sing N N 128 A "C5'" "H5'" sing N N 129 A "C5'" "H5''" sing N N 130 A "C4'" "O4'" sing N N 131 A "C4'" "C3'" sing N N 132 A "C4'" "H4'" sing N N 133 A "O4'" "C1'" sing N N 134 A "C3'" "O3'" sing N N 135 A "C3'" "C2'" sing N N 136 A "C3'" "H3'" sing N N 137 A "O3'" "HO3'" sing N N 138 A "C2'" "O2'" sing N N 139 A "C2'" "C1'" sing N N 140 A "C2'" "H2'" sing N N 141 A "O2'" "HO2'" sing N N 142 A "C1'" N9 sing N N 143 A "C1'" "H1'" sing N N 144 A N9 C8 sing Y N 145 A N9 C4 sing Y N 146 A C8 N7 doub Y N 147 A C8 H8 sing N N 148 A N7 C5 sing Y N 149 A C5 C6 sing Y N 150 A C5 C4 doub Y N 151 A C6 N6 sing N N 152 A C6 N1 doub Y N 153 A N6 H61 sing N N 154 A N6 H62 sing N N 155 A N1 C2 sing Y N 156 A C2 N3 doub Y N 157 A C2 H2 sing N N 158 A N3 C4 sing Y N 159 C OP3 P sing N N 160 C OP3 HOP3 sing N N 161 C P OP1 doub N N 162 C P OP2 sing N N 163 C P "O5'" sing N N 164 C OP2 HOP2 sing N N 165 C "O5'" "C5'" sing N N 166 C "C5'" "C4'" sing N N 167 C "C5'" "H5'" sing N N 168 C "C5'" "H5''" sing N N 169 C "C4'" "O4'" sing N N 170 C "C4'" "C3'" sing N N 171 C "C4'" "H4'" sing N N 172 C "O4'" "C1'" sing N N 173 C "C3'" "O3'" sing N N 174 C "C3'" "C2'" sing N N 175 C "C3'" "H3'" sing N N 176 C "O3'" "HO3'" sing N N 177 C "C2'" "O2'" sing N N 178 C "C2'" "C1'" sing N N 179 C "C2'" "H2'" sing N N 180 C "O2'" "HO2'" sing N N 181 C "C1'" N1 sing N N 182 C "C1'" "H1'" sing N N 183 C N1 C2 sing N N 184 C N1 C6 sing N N 185 C C2 O2 doub N N 186 C C2 N3 sing N N 187 C N3 C4 doub N N 188 C C4 N4 sing N N 189 C C4 C5 sing N N 190 C N4 H41 sing N N 191 C N4 H42 sing N N 192 C C5 C6 doub N N 193 C C5 H5 sing N N 194 C C6 H6 sing N N 195 G OP3 P sing N N 196 G OP3 HOP3 sing N N 197 G P OP1 doub N N 198 G P OP2 sing N N 199 G P "O5'" sing N N 200 G OP2 HOP2 sing N N 201 G "O5'" "C5'" sing N N 202 G "C5'" "C4'" sing N N 203 G "C5'" "H5'" sing N N 204 G "C5'" "H5''" sing N N 205 G "C4'" "O4'" sing N N 206 G "C4'" "C3'" sing N N 207 G "C4'" "H4'" sing N N 208 G "O4'" "C1'" sing N N 209 G "C3'" "O3'" sing N N 210 G "C3'" "C2'" sing N N 211 G "C3'" "H3'" sing N N 212 G "O3'" "HO3'" sing N N 213 G "C2'" "O2'" sing N N 214 G "C2'" "C1'" sing N N 215 G "C2'" "H2'" sing N N 216 G "O2'" "HO2'" sing N N 217 G "C1'" N9 sing N N 218 G "C1'" "H1'" sing N N 219 G N9 C8 sing Y N 220 G N9 C4 sing Y N 221 G C8 N7 doub Y N 222 G C8 H8 sing N N 223 G N7 C5 sing Y N 224 G C5 C6 sing N N 225 G C5 C4 doub Y N 226 G C6 O6 doub N N 227 G C6 N1 sing N N 228 G N1 C2 sing N N 229 G N1 H1 sing N N 230 G C2 N2 sing N N 231 G C2 N3 doub N N 232 G N2 H21 sing N N 233 G N2 H22 sing N N 234 G N3 C4 sing N N 235 H2U P OP1 doub N N 236 H2U P OP2 sing N N 237 H2U P OP3 sing N N 238 H2U P "O5'" sing N N 239 H2U OP2 HOP2 sing N N 240 H2U OP3 HOP3 sing N N 241 H2U "O5'" "C5'" sing N N 242 H2U "C5'" "C4'" sing N N 243 H2U "C5'" "H5'" sing N N 244 H2U "C5'" "H5''" sing N N 245 H2U "C4'" "O4'" sing N N 246 H2U "C4'" "C3'" sing N N 247 H2U "C4'" "H4'" sing N N 248 H2U "O4'" "C1'" sing N N 249 H2U "C3'" "O3'" sing N N 250 H2U "C3'" "C2'" sing N N 251 H2U "C3'" "H3'" sing N N 252 H2U "O3'" "HO3'" sing N N 253 H2U "C1'" "C2'" sing N N 254 H2U "C1'" N1 sing N N 255 H2U "C1'" "H1'" sing N N 256 H2U "C2'" "O2'" sing N N 257 H2U "C2'" "H2'" sing N N 258 H2U "O2'" "HO2'" sing N N 259 H2U N1 C2 sing N N 260 H2U N1 C6 sing N N 261 H2U C2 O2 doub N N 262 H2U C2 N3 sing N N 263 H2U N3 C4 sing N N 264 H2U N3 HN3 sing N N 265 H2U C4 O4 doub N N 266 H2U C4 C5 sing N N 267 H2U C5 C6 sing N N 268 H2U C5 H51 sing N N 269 H2U C5 H52 sing N N 270 H2U C6 H61 sing N N 271 H2U C6 H62 sing N N 272 PSU N1 C2 sing N N 273 PSU N1 C6 sing N N 274 PSU N1 HN1 sing N N 275 PSU C2 N3 sing N N 276 PSU C2 O2 doub N N 277 PSU N3 C4 sing N N 278 PSU N3 HN3 sing N N 279 PSU C4 C5 sing N N 280 PSU C4 O4 doub N N 281 PSU C5 C6 doub N N 282 PSU C5 "C1'" sing N N 283 PSU C6 H6 sing N N 284 PSU "C1'" "C2'" sing N N 285 PSU "C1'" "O4'" sing N N 286 PSU "C1'" "H1'" sing N N 287 PSU "C2'" "O2'" sing N N 288 PSU "C2'" "C3'" sing N N 289 PSU "C2'" "H2'" sing N N 290 PSU "O2'" "HO2'" sing N N 291 PSU "C3'" "C4'" sing N N 292 PSU "C3'" "O3'" sing N N 293 PSU "C3'" "H3'" sing N N 294 PSU "C4'" "O4'" sing N N 295 PSU "C4'" "C5'" sing N N 296 PSU "C4'" "H4'" sing N N 297 PSU "O3'" "HO3'" sing N N 298 PSU "C5'" "O5'" sing N N 299 PSU "C5'" "H5'" sing N N 300 PSU "C5'" "H5''" sing N N 301 PSU "O5'" P sing N N 302 PSU P OP1 doub N N 303 PSU P OP2 sing N N 304 PSU P OP3 sing N N 305 PSU OP2 HOP2 sing N N 306 PSU OP3 HOP3 sing N N 307 U OP3 P sing N N 308 U OP3 HOP3 sing N N 309 U P OP1 doub N N 310 U P OP2 sing N N 311 U P "O5'" sing N N 312 U OP2 HOP2 sing N N 313 U "O5'" "C5'" sing N N 314 U "C5'" "C4'" sing N N 315 U "C5'" "H5'" sing N N 316 U "C5'" "H5''" sing N N 317 U "C4'" "O4'" sing N N 318 U "C4'" "C3'" sing N N 319 U "C4'" "H4'" sing N N 320 U "O4'" "C1'" sing N N 321 U "C3'" "O3'" sing N N 322 U "C3'" "C2'" sing N N 323 U "C3'" "H3'" sing N N 324 U "O3'" "HO3'" sing N N 325 U "C2'" "O2'" sing N N 326 U "C2'" "C1'" sing N N 327 U "C2'" "H2'" sing N N 328 U "O2'" "HO2'" sing N N 329 U "C1'" N1 sing N N 330 U "C1'" "H1'" sing N N 331 U N1 C2 sing N N 332 U N1 C6 sing N N 333 U C2 O2 doub N N 334 U C2 N3 sing N N 335 U N3 C4 sing N N 336 U N3 H3 sing N N 337 U C4 O4 doub N N 338 U C4 C5 sing N N 339 U C5 C6 doub N N 340 U C5 H5 sing N N 341 U C6 H6 sing N N 342 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1VTQ 'double helix' 1VTQ 'a-form double helix' 1VTQ 'hairpin loop' 1VTQ 'mismatched base pair' 1VTQ 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 1 1_555 A A 71 1_555 -0.118 -0.023 -1.105 27.868 -5.116 -3.134 1 A_U1:A71_A A 1 ? A 71 ? 20 1 1 A C 2 1_555 A G 70 1_555 0.101 -0.115 0.229 3.772 -1.729 -2.178 2 A_C2:G70_A A 2 ? A 70 ? 19 1 1 A C 3 1_555 A G 69 1_555 -0.486 -0.057 -0.070 -0.797 10.508 -0.514 3 A_C3:G69_A A 3 ? A 69 ? 19 1 1 A G 4 1_555 A C 68 1_555 -0.752 -0.332 0.359 -0.563 -11.232 -3.618 4 A_G4:C68_A A 4 ? A 68 ? 19 1 1 A U 5 1_555 A G 67 1_555 1.865 -0.337 -0.534 1.337 4.321 2.734 5 A_U5:G67_A A 5 ? A 67 ? 28 1 1 A G 6 1_555 A C 66 1_555 -1.106 -0.625 0.516 -4.963 -15.083 -4.143 6 A_G6:C66_A A 6 ? A 66 ? 19 1 1 A A 7 1_555 A U 65 1_555 -0.033 -0.030 0.264 -3.457 -3.198 -2.847 7 A_A7:U65_A A 7 ? A 65 ? 20 1 1 A 5MC 48 1_555 A G 64 1_555 -0.529 -0.112 -0.288 2.981 -6.129 -0.576 8 A_5MC48:G64_A A 48 ? A 64 ? 19 1 1 A G 49 1_555 A C 63 1_555 -0.981 -0.393 0.128 9.785 -4.586 -0.787 9 A_G49:C63_A A 49 ? A 63 ? 19 1 1 A G 50 1_555 A C 62 1_555 -1.436 -0.711 -0.096 9.313 -1.948 -2.638 10 A_G50:C62_A A 50 ? A 62 ? 19 1 1 A G 51 1_555 A C 61 1_555 1.144 -0.199 -0.199 4.334 -11.090 0.067 11 A_G51:C61_A A 51 ? A 61 ? 19 1 1 A G 52 1_555 A C 60 1_555 -0.210 -0.145 0.035 -6.830 2.227 -2.717 12 A_G52:C60_A A 52 ? A 60 ? 19 1 1 A 5MU 53 1_555 A A 57 1_555 4.080 -1.957 0.039 7.886 0.091 -95.299 13 A_5MU53:A57_A A 53 ? A 57 ? 24 4 1 A PSU 54 1_555 A G 17 1_555 -0.281 -6.554 0.629 31.830 1.172 -113.774 14 A_PSU54:G17_A A 54 ? A 17 ? ? ? 1 A C 38 1_555 A PSU 32 1_555 -6.122 -2.139 -0.734 6.110 13.194 -6.407 15 A_C38:PSU32_A A 38 ? A 32 ? ? ? 1 A G 39 1_555 A C 31 1_555 -0.454 -0.248 0.523 1.791 -8.632 -3.564 16 A_G39:C31_A A 39 ? A 31 ? 19 1 1 A U 40 1_555 A G 30 1_555 1.927 -0.382 0.128 -8.865 -13.835 -2.438 17 A_U40:G30_A A 40 ? A 30 ? 28 1 1 A G 41 1_555 A C 29 1_555 -0.804 -0.364 0.397 3.761 -8.786 -2.440 18 A_G41:C29_A A 41 ? A 29 ? 19 1 1 A C 42 1_555 A G 28 1_555 -0.247 -0.114 -0.049 5.296 -14.119 -1.708 19 A_C42:G28_A A 42 ? A 28 ? 19 1 1 A C 43 1_555 A G 27 1_555 -0.471 -0.130 0.168 -0.682 -13.170 -2.086 20 A_C43:G27_A A 43 ? A 27 ? 19 1 1 A A 44 1_555 A G 26 1_555 -0.072 1.289 -0.419 -17.805 -20.845 -18.957 21 A_A44:G26_A A 44 ? A 26 ? 8 1 1 A G 10 1_555 A U 25 1_555 -2.092 -0.447 0.147 3.079 0.715 -1.936 22 A_G10:U25_A A 10 ? A 25 ? 28 1 1 A U 11 1_555 A A 24 1_555 -0.031 -0.146 0.346 2.045 -14.731 -1.765 23 A_U11:A24_A A 11 ? A 24 ? 20 1 1 A U 12 1_555 A A 23 1_555 0.156 -0.121 -0.040 -2.522 -0.670 -2.229 24 A_U12:A23_A A 12 ? A 23 ? 20 1 1 A PSU 13 1_555 A G 22 1_555 1.673 -0.365 0.525 2.054 -6.985 -0.639 25 A_PSU13:G22_A A 13 ? A 22 ? 27 1 1 A A 14 1_555 A A 21 1_555 -5.733 -0.715 0.096 -3.945 -14.780 47.965 26 A_A14:A21_A A 14 ? A 21 ? ? 5 1 A A 15 1_555 A U 47 1_555 0.192 1.107 -0.409 0.178 4.823 165.785 27 A_A15:U47_A A 15 ? A 47 ? 21 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 1 1_555 A A 71 1_555 A C 2 1_555 A G 70 1_555 0.431 -1.400 3.922 -8.028 7.769 36.110 -3.313 -1.853 3.391 12.179 12.585 37.744 1 AA_U1C2:G70A71_AA A 1 ? A 71 ? A 2 ? A 70 ? 1 A C 2 1_555 A G 70 1_555 A C 3 1_555 A G 69 1_555 -0.029 -2.134 3.591 3.780 10.672 30.829 -5.602 0.696 2.700 19.279 -6.828 32.794 2 AA_C2C3:G69G70_AA A 2 ? A 70 ? A 3 ? A 69 ? 1 A C 3 1_555 A G 69 1_555 A G 4 1_555 A C 68 1_555 0.246 -1.467 2.782 -1.281 14.917 26.508 -5.007 -0.659 1.717 29.709 2.551 30.378 3 AA_C3G4:C68G69_AA A 3 ? A 69 ? A 4 ? A 68 ? 1 A G 4 1_555 A C 68 1_555 A U 5 1_555 A G 67 1_555 0.401 -1.775 3.600 2.783 -2.486 42.592 -2.156 -0.238 3.710 -3.414 -3.822 42.747 4 AA_G4U5:G67C68_AA A 4 ? A 68 ? A 5 ? A 67 ? 1 A U 5 1_555 A G 67 1_555 A G 6 1_555 A C 66 1_555 0.121 -1.884 3.191 1.620 10.039 21.021 -7.578 0.173 2.086 25.670 -4.143 23.327 5 AA_U5G6:C66G67_AA A 5 ? A 67 ? A 6 ? A 66 ? 1 A G 6 1_555 A C 66 1_555 A A 7 1_555 A U 65 1_555 0.299 -0.930 3.295 7.929 16.532 36.068 -3.149 0.430 2.648 24.825 -11.906 40.322 6 AA_G6A7:U65C66_AA A 6 ? A 66 ? A 7 ? A 65 ? 1 A A 7 1_555 A U 65 1_555 A 5MC 48 1_555 A G 64 1_555 0.216 -1.225 3.072 2.770 12.900 31.784 -3.839 0.014 2.418 22.387 -4.807 34.348 7 AA_A75MC48:G64U65_AA A 7 ? A 65 ? A 48 ? A 64 ? 1 A 5MC 48 1_555 A G 64 1_555 A G 49 1_555 A C 63 1_555 -0.398 -2.077 2.604 -6.994 15.666 31.571 -4.882 -0.026 1.494 26.489 11.826 35.827 8 AA_5MC48G49:C63G64_AA A 48 ? A 64 ? A 49 ? A 63 ? 1 A G 49 1_555 A C 63 1_555 A G 50 1_555 A C 62 1_555 0.161 -1.782 3.358 -3.729 8.332 29.650 -4.864 -0.986 2.729 15.816 7.079 30.994 9 AA_G49G50:C62C63_AA A 49 ? A 63 ? A 50 ? A 62 ? 1 A G 50 1_555 A C 62 1_555 A G 51 1_555 A C 61 1_555 -0.093 -1.613 3.554 -1.681 7.692 47.713 -2.599 -0.023 3.273 9.434 2.061 48.321 10 AA_G50G51:C61C62_AA A 50 ? A 62 ? A 51 ? A 61 ? 1 A G 51 1_555 A C 61 1_555 A G 52 1_555 A C 60 1_555 0.072 -2.714 3.420 0.270 -4.965 20.775 -5.005 -0.067 3.953 -13.519 -0.736 21.355 11 AA_G51G52:C60C61_AA A 51 ? A 61 ? A 52 ? A 60 ? 1 A G 52 1_555 A C 60 1_555 A 5MU 53 1_555 A A 57 1_555 -2.032 -2.521 3.130 3.406 -5.858 87.420 -1.698 1.538 3.195 -4.233 -2.462 87.630 12 AA_G525MU53:A57C60_AA A 52 ? A 60 ? A 53 ? A 57 ? 1 A 5MU 53 1_555 A A 57 1_555 A PSU 54 1_555 A G 17 1_555 0.884 -2.145 3.537 6.566 6.815 52.482 -2.851 -0.544 3.335 7.636 -7.357 53.268 13 AA_5MU53PSU54:G17A57_AA A 53 ? A 57 ? A 54 ? A 17 ? 1 A C 38 1_555 A PSU 32 1_555 A G 39 1_555 A C 31 1_555 0.781 -1.287 3.557 -12.917 -1.630 46.193 -1.447 -2.054 3.280 -2.030 16.091 47.895 14 AA_C38G39:C31PSU32_AA A 38 ? A 32 ? A 39 ? A 31 ? 1 A G 39 1_555 A C 31 1_555 A U 40 1_555 A G 30 1_555 -0.168 -1.380 3.593 6.574 -0.730 42.843 -1.791 0.931 3.553 -0.992 -8.936 43.327 15 AA_G39U40:G30C31_AA A 39 ? A 31 ? A 40 ? A 30 ? 1 A U 40 1_555 A G 30 1_555 A G 41 1_555 A C 29 1_555 -0.251 -2.555 2.846 -3.346 6.552 16.957 -10.591 -0.563 1.759 20.980 10.714 18.474 16 AA_U40G41:C29G30_AA A 40 ? A 30 ? A 41 ? A 29 ? 1 A G 41 1_555 A C 29 1_555 A C 42 1_555 A G 28 1_555 -0.606 -1.524 3.087 2.722 0.587 34.592 -2.639 1.405 3.007 0.985 -4.568 34.701 17 AA_G41C42:G28C29_AA A 41 ? A 29 ? A 42 ? A 28 ? 1 A C 42 1_555 A G 28 1_555 A C 43 1_555 A G 27 1_555 0.417 -1.581 3.515 1.807 3.881 37.325 -2.988 -0.399 3.355 6.039 -2.813 37.561 18 AA_C42C43:G27G28_AA A 42 ? A 28 ? A 43 ? A 27 ? 1 A C 43 1_555 A G 27 1_555 A A 44 1_555 A G 26 1_555 -0.566 -1.693 3.365 9.386 14.527 33.756 -4.316 1.974 2.247 23.222 -15.004 37.814 19 AA_C43A44:G26G27_AA A 43 ? A 27 ? A 44 ? A 26 ? 1 A A 44 1_555 A G 26 1_555 A G 10 1_555 A U 25 1_555 -3.053 -2.844 2.926 4.926 18.324 55.228 -3.637 3.333 1.727 19.147 -5.147 58.153 20 AA_A44G10:U25G26_AA A 44 ? A 26 ? A 10 ? A 25 ? 1 A G 10 1_555 A U 25 1_555 A U 11 1_555 A A 24 1_555 -0.494 -1.551 3.480 -0.646 3.133 44.632 -2.338 0.587 3.376 4.119 0.849 44.740 21 AA_G10U11:A24U25_AA A 10 ? A 25 ? A 11 ? A 24 ? 1 A U 11 1_555 A A 24 1_555 A U 12 1_555 A A 23 1_555 -0.386 -1.366 3.263 -1.964 13.701 34.765 -3.812 0.363 2.579 21.886 3.137 37.340 22 AA_U11U12:A23A24_AA A 11 ? A 24 ? A 12 ? A 23 ? 1 A U 12 1_555 A A 23 1_555 A PSU 13 1_555 A G 22 1_555 0.607 -2.365 3.156 -5.620 -1.549 22.061 -5.443 -3.480 3.065 -3.960 14.367 22.809 23 AA_U12PSU13:G22A23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A PSU 13 1_555 A G 22 1_555 A A 14 1_555 A A 21 1_555 3.206 -3.539 3.465 10.768 -0.820 3.155 -15.801 13.240 4.299 -5.604 -73.548 11.249 24 AA_PSU13A14:A21G22_AA A 13 ? A 22 ? A 14 ? A 21 ? 1 A A 14 1_555 A A 21 1_555 A A 15 1_555 A U 47 1_555 -1.539 0.247 3.196 -6.232 10.576 -16.261 -4.884 -6.823 1.963 -32.090 -18.911 -20.350 25 AA_A14A15:U47A21_AA A 14 ? A 21 ? A 15 ? A 47 ? # _atom_sites.entry_id 1VTQ _atom_sites.fract_transf_matrix[1][1] 0.016584 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014706 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000070 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006689 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_