data_1W5U # _entry.id 1W5U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1W5U pdb_00001w5u 10.2210/pdb1w5u/pdb PDBE EBI-20725 ? ? WWPDB D_1290020725 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1TK2 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN S COMPLEXED WITH ALKALINE PROTEINASE SAVINASE' PDB 2XDC unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A FROM CRYSTALS GROWN IN A LIPID CUBIC PHASE.' PDB 1AV2 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE' PDB 1BDW unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A FROM BACILLUS BREVIS' PDB 1C4D unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE' PDB 1GMK unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLRXED WITH POTASSIUM THIOCYANATE' PDB 1GRM unspecified 'SOLUTION STRUCTURE OF THE GRAMICIDIN A' PDB 1JNO unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES' PDB 1KQE unspecified 'SOLUTION STRUCTURE OF A LINKED SHORTENED GRAMICIDIN A IN BENZENE/ACETONE 10:1' PDB 1MAG unspecified 'SOLID STATE NMR STRUCTURE OF GRAMICIDIN A IN HYDRATED DMPC BILAYERS,' PDB 1MIC unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN METHANOL IN THE PRESENCE OF CACL' PDB 1NG8 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A (W15G) IN SODIUM DODECYL SULFATE MICELLES' PDB 1NRM unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES' PDB 1NRU unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES IN THE PRESENCE OF EXCESS NA+' PDB 1NT5 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A (V1F) IN SODIUM DODECYL SULFATE MICELLES' PDB 1JO3 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN B IN SODIUM DODECYL SULFATE MICELLES' PDB 1JO4 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES' PDB 1NT6 unspecified 'SOLUTION STRUCTURE OF F1-GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES' PDB 1TKQ unspecified 'SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN A IN A MEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE, IN THE PRESENCE OF CSCL' PDB 2IZQ unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH KI IN METHANOL' PDB 3L8L unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH NAI' PDB 1AL4 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN N-PROPANOL' PDB 1ALX unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN METHANOL' PDB 1ALZ unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1W5U _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2004-08-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Glowka, M.L.' 1 'Olczak, A.' 2 'Bojarska, J.' 3 'Szczesio, M.' 4 'Duax, W.L.' 5 'Burkhart, B.M.' 6 'Pangborn, W.A.' 7 'Langs, D.A.' 8 'Wawrzak, Z.' 9 # _citation.id primary _citation.title ;Structure of Gramicidin D-Rbcl Complex at Atomic Resolution from Low-Temperature Synchrotron Data: Interactions of Double-Stranded Gramicidin Channel Contents and Cations with Channel Wall ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 61 _citation.page_first 433 _citation.page_last ? _citation.year 2005 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15805598 _citation.pdbx_database_id_DOI 10.1107/S0907444905000399 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Glowka, M.L.' 1 ? primary 'Olczak, A.' 2 ? primary 'Bojarska, J.' 3 ? primary 'Szczesio, M.' 4 ? primary 'Duax, W.L.' 5 ? primary 'Burkhart, B.M.' 6 ? primary 'Pangborn, W.A.' 7 ? primary 'Langs, D.A.' 8 ? primary 'Wawrzak, Z.' 9 ? # _cell.entry_id 1W5U _cell.length_a 30.060 _cell.length_b 31.300 _cell.length_c 51.691 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1W5U _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'GRAMICIDIN D' 1882.294 4 ? ? ? ? 2 non-polymer syn 'RUBIDIUM ION' 85.468 14 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 6 ? ? ? ? 4 non-polymer syn ETHANOL 46.068 1 ? ? ? ? 5 water nat water 18.015 31 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'VAL-GRAMICIDIN A' 2 'VAL-GRAMICIDIN A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(FVA)GA(DLE)A(DVA)V(DVA)W(DLE)W(DLE)W(DLE)W(ETA)' _entity_poly.pdbx_seq_one_letter_code_can VGALAVVVWLWLWLWX _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 FVA n 1 2 GLY n 1 3 ALA n 1 4 DLE n 1 5 ALA n 1 6 DVA n 1 7 VAL n 1 8 DVA n 1 9 TRP n 1 10 DLE n 1 11 TRP y 1 11 TYR y 1 12 DLE n 1 13 TRP n 1 14 DLE n 1 15 TRP n 1 16 ETA n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 16 ? 'BACILLUS BREVIS' 1393 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'BACILLUS BREVIS' 1393 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1W5U _struct_ref.pdbx_db_accession 1W5U _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1W5U A 1 ? 16 ? 1W5U 1 ? 16 ? 1 16 2 1 1W5U B 1 ? 16 ? 1W5U 1 ? 16 ? 1 16 3 1 1W5U C 1 ? 16 ? 1W5U 1 ? 16 ? 1 16 4 1 1W5U D 1 ? 16 ? 1W5U 1 ? 16 ? 1 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 EOH non-polymer . ETHANOL ? 'C2 H6 O' 46.068 ETA 'L-peptide COOH carboxy terminus' . ETHANOLAMINE ? 'C2 H7 N O' 61.083 FVA 'L-peptide linking' n N-formyl-L-valine ? 'C6 H11 N O3' 145.156 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 RB non-polymer . 'RUBIDIUM ION' ? 'Rb 1' 85.468 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1W5U _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.61 _exptl_crystal.density_percent_sol 23.83 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'BATCH CRYSTALLIZATION WITH 30 MG/ML GRAMICIDIN AND SATURATED RBCL IN ETHANOL' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.71 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength 0.71 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1W5U _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.140 _reflns.number_obs 33140 _reflns.number_all ? _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.07000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.5000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.250 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.14 _reflns_shell.d_res_low 20.00 _reflns_shell.percent_possible_all 97.2 _reflns_shell.Rmerge_I_obs 0.34000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.400 _reflns_shell.pdbx_redundancy 4.44 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1W5U _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 33140 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 1.14 _refine.ls_percent_reflns_obs 98.7 _refine.ls_R_factor_obs 0.1714 _refine.ls_R_factor_all 0.1731 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.2147 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5. _refine.ls_number_reflns_R_free 1628 _refine.ls_number_parameters 6591 _refine.ls_number_restraints 9395 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1AV2' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1W5U _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 24 _refine_analyze.occupancy_sum_hydrogen 557.77 _refine_analyze.occupancy_sum_non_hydrogen 570.12 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 567 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 621 _refine_hist.d_res_high 1.14 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.036 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.028 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.098 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.138 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.038 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1W5U _pdbx_refine.R_factor_all_no_cutoff 0.1731 _pdbx_refine.R_factor_obs_no_cutoff 0.1714 _pdbx_refine.free_R_factor_no_cutoff 0.2147 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5. _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1628 _pdbx_refine.R_factor_all_4sig_cutoff 0.1624 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1618 _pdbx_refine.free_R_factor_4sig_cutoff 0.2018 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5. _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1470 _pdbx_refine.number_reflns_obs_4sig_cutoff 28271 # _struct.entry_id 1W5U _struct.title 'GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1W5U _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ANTIBIOTIC, GRAMICIDIN, ANTIFUNGAL, ANTIBACTERIAL, MEMBRANE ION CHANNEL, LINEAR GRAMICIDIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 2 ? P N N 4 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? U N N 2 ? V N N 2 ? W N N 2 ? X N N 2 ? Y N N 3 ? Z N N 5 ? AA N N 5 ? BA N N 5 ? CA N N 5 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A FVA 1 C ? ? ? 1_555 A GLY 2 N ? ? A FVA 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale2 covale both ? A ALA 3 C ? ? ? 1_555 A DLE 4 N ? ? A ALA 3 A DLE 4 1_555 ? ? ? ? ? ? ? 1.279 ? ? covale3 covale both ? A DLE 4 C ? ? ? 1_555 A ALA 5 N ? ? A DLE 4 A ALA 5 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale4 covale both ? A ALA 5 C ? ? ? 1_555 A DVA 6 N ? ? A ALA 5 A DVA 6 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale5 covale both ? A DVA 6 C ? ? ? 1_555 A VAL 7 N ? ? A DVA 6 A VAL 7 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale6 covale both ? A VAL 7 C ? ? ? 1_555 A DVA 8 N ? ? A VAL 7 A DVA 8 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale7 covale both ? A DVA 8 C ? ? ? 1_555 A TRP 9 N ? ? A DVA 8 A TRP 9 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? A TRP 9 C ? ? ? 1_555 A DLE 10 N ? ? A TRP 9 A DLE 10 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale9 covale both ? A DLE 10 C ? ? ? 1_555 A TRP 11 N ? ? A DLE 10 A TRP 11 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale10 covale both ? A TRP 11 C ? ? ? 1_555 A DLE 12 N ? ? A TRP 11 A DLE 12 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale11 covale both ? A DLE 12 C ? ? ? 1_555 A TRP 13 N ? ? A DLE 12 A TRP 13 1_555 ? ? ? ? ? ? ? 1.306 ? ? covale12 covale both ? A TRP 13 C ? ? ? 1_555 A DLE 14 N ? ? A TRP 13 A DLE 14 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale13 covale both ? A DLE 14 C ? ? ? 1_555 A TRP 15 N ? ? A DLE 14 A TRP 15 1_555 ? ? ? ? ? ? ? 1.302 ? ? covale14 covale both ? A TRP 15 C ? ? ? 1_555 A ETA 16 N ? ? A TRP 15 A ETA 16 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale15 covale both ? B FVA 1 C ? ? ? 1_555 B GLY 2 N ? ? B FVA 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale16 covale both ? B ALA 3 C ? ? ? 1_555 B DLE 4 N ? ? B ALA 3 B DLE 4 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale17 covale both ? B DLE 4 C ? ? ? 1_555 B ALA 5 N ? ? B DLE 4 B ALA 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale18 covale both ? B ALA 5 C ? ? ? 1_555 B DVA 6 N ? ? B ALA 5 B DVA 6 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale19 covale both ? B DVA 6 C ? ? ? 1_555 B VAL 7 N ? ? B DVA 6 B VAL 7 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale20 covale both ? B VAL 7 C ? ? ? 1_555 B DVA 8 N ? ? B VAL 7 B DVA 8 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale21 covale both ? B DVA 8 C ? ? ? 1_555 B TRP 9 N ? ? B DVA 8 B TRP 9 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale22 covale both ? B TRP 9 C ? ? ? 1_555 B DLE 10 N ? ? B TRP 9 B DLE 10 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale23 covale both ? B DLE 10 C ? ? ? 1_555 B TRP 11 N A ? B DLE 10 B TRP 11 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale24 covale both ? B DLE 10 C ? ? ? 1_555 B TYR 11 N B ? B DLE 10 B TYR 11 1_555 ? ? ? ? ? ? ? 1.286 ? ? covale25 covale both ? B TRP 11 C A ? ? 1_555 B DLE 12 N ? ? B TRP 11 B DLE 12 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale26 covale both ? B DLE 12 C ? ? ? 1_555 B TRP 13 N ? ? B DLE 12 B TRP 13 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale27 covale both ? B TRP 13 C ? ? ? 1_555 B DLE 14 N ? ? B TRP 13 B DLE 14 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale28 covale both ? B DLE 14 C ? ? ? 1_555 B TRP 15 N ? ? B DLE 14 B TRP 15 1_555 ? ? ? ? ? ? ? 1.283 ? ? covale29 covale both ? B TRP 15 C ? ? ? 1_555 B ETA 16 N ? ? B TRP 15 B ETA 16 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale30 covale both ? C FVA 1 C ? ? ? 1_555 C GLY 2 N ? ? C FVA 1 C GLY 2 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale31 covale both ? C ALA 3 C ? ? ? 1_555 C DLE 4 N ? ? C ALA 3 C DLE 4 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale32 covale both ? C DLE 4 C ? ? ? 1_555 C ALA 5 N ? ? C DLE 4 C ALA 5 1_555 ? ? ? ? ? ? ? 1.285 ? ? covale33 covale both ? C ALA 5 C ? ? ? 1_555 C DVA 6 N ? ? C ALA 5 C DVA 6 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale34 covale both ? C DVA 6 C ? ? ? 1_555 C VAL 7 N ? ? C DVA 6 C VAL 7 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale35 covale both ? C VAL 7 C ? ? ? 1_555 C DVA 8 N ? ? C VAL 7 C DVA 8 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale36 covale both ? C DVA 8 C ? ? ? 1_555 C TRP 9 N ? ? C DVA 8 C TRP 9 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale37 covale both ? C TRP 9 C ? ? ? 1_555 C DLE 10 N ? ? C TRP 9 C DLE 10 1_555 ? ? ? ? ? ? ? 1.301 ? ? covale38 covale both ? C DLE 10 C ? ? ? 1_555 C TRP 11 N ? ? C DLE 10 C TRP 11 1_555 ? ? ? ? ? ? ? 1.304 ? ? covale39 covale both ? C TRP 11 C ? ? ? 1_555 C DLE 12 N ? ? C TRP 11 C DLE 12 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale40 covale both ? C DLE 12 C ? ? ? 1_555 C TRP 13 N ? ? C DLE 12 C TRP 13 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale41 covale both ? C TRP 13 C ? ? ? 1_555 C DLE 14 N ? ? C TRP 13 C DLE 14 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale42 covale both ? C DLE 14 C ? ? ? 1_555 C TRP 15 N ? ? C DLE 14 C TRP 15 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale43 covale both ? C TRP 15 C ? ? ? 1_555 C ETA 16 N ? ? C TRP 15 C ETA 16 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale44 covale both ? D FVA 1 C ? ? ? 1_555 D GLY 2 N ? ? D FVA 1 D GLY 2 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale45 covale both ? D ALA 3 C ? ? ? 1_555 D DLE 4 N ? ? D ALA 3 D DLE 4 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale46 covale both ? D DLE 4 C ? ? ? 1_555 D ALA 5 N ? ? D DLE 4 D ALA 5 1_555 ? ? ? ? ? ? ? 1.306 ? ? covale47 covale both ? D ALA 5 C ? ? ? 1_555 D DVA 6 N ? ? D ALA 5 D DVA 6 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale48 covale both ? D DVA 6 C ? ? ? 1_555 D VAL 7 N ? ? D DVA 6 D VAL 7 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale49 covale both ? D VAL 7 C ? ? ? 1_555 D DVA 8 N ? ? D VAL 7 D DVA 8 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale50 covale both ? D DVA 8 C ? ? ? 1_555 D TRP 9 N ? ? D DVA 8 D TRP 9 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale51 covale both ? D TRP 9 C ? ? ? 1_555 D DLE 10 N ? ? D TRP 9 D DLE 10 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale52 covale both ? D DLE 10 C ? ? ? 1_555 D TRP 11 N A ? D DLE 10 D TRP 11 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale53 covale both ? D DLE 10 C ? ? ? 1_555 D TYR 11 N B ? D DLE 10 D TYR 11 1_555 ? ? ? ? ? ? ? 1.283 ? ? covale54 covale both ? D TRP 11 C A ? ? 1_555 D DLE 12 N ? ? D TRP 11 D DLE 12 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale55 covale both ? D DLE 12 C ? ? ? 1_555 D TRP 13 N ? ? D DLE 12 D TRP 13 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale56 covale both ? D TRP 13 C ? ? ? 1_555 D DLE 14 N ? ? D TRP 13 D DLE 14 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale57 covale both ? D DLE 14 C ? ? ? 1_555 D TRP 15 N ? ? D DLE 14 D TRP 15 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale58 covale both ? D TRP 15 C ? ? ? 1_555 D ETA 16 N ? ? D TRP 15 D ETA 16 1_555 ? ? ? ? ? ? ? 1.357 ? ? metalc1 metalc ? ? E RB . RB ? ? ? 1_555 Z HOH . O ? ? A RB 1017 A HOH 2004 1_555 ? ? ? ? ? ? ? 2.594 ? ? metalc2 metalc ? ? E RB . RB ? ? ? 1_555 B DLE 12 O ? ? A RB 1017 B DLE 12 1_555 ? ? ? ? ? ? ? 3.053 ? ? metalc3 metalc ? ? Z HOH . O ? ? ? 2_664 I RB . RB ? ? A HOH 2001 B RB 1016 1_555 ? ? ? ? ? ? ? 3.147 ? ? metalc4 metalc ? ? B GLY 2 O ? ? ? 1_555 O RB . RB ? ? B GLY 2 C RB 1016 1_555 ? ? ? ? ? ? ? 3.129 ? ? metalc5 metalc ? ? B TRP 15 O ? ? ? 1_555 T RB . RB ? ? B TRP 15 C RB 1021 1_555 ? ? ? ? ? ? ? 3.167 ? ? metalc6 metalc ? ? J RB . RB ? ? ? 1_555 AA HOH . O ? ? B RB 1017 B HOH 2002 1_555 ? ? ? ? ? ? ? 2.747 ? ? metalc7 metalc ? ? J RB . RB ? ? ? 1_555 AA HOH . O ? ? B RB 1017 B HOH 2004 1_555 ? ? ? ? ? ? ? 3.132 ? ? metalc8 metalc ? ? K RB . RB ? ? ? 1_555 AA HOH . O ? ? B RB 1018 B HOH 2008 1_555 ? ? ? ? ? ? ? 2.757 ? ? metalc9 metalc ? ? AA HOH . O ? ? ? 1_555 T RB . RB ? ? B HOH 2007 C RB 1021 1_555 ? ? ? ? ? ? ? 2.741 ? ? metalc10 metalc ? ? C GLY 2 O ? ? ? 1_555 S RB . RB ? ? C GLY 2 C RB 1020 1_555 ? ? ? ? ? ? ? 3.164 ? ? metalc11 metalc ? ? C ETA 16 N ? ? ? 1_555 Q RB . RB ? ? C ETA 16 C RB 1018 1_555 ? ? ? ? ? ? ? 3.151 ? ? metalc12 metalc ? ? Q RB . RB ? ? ? 1_555 BA HOH . O ? ? C RB 1018 C HOH 2003 1_555 ? ? ? ? ? ? ? 3.113 ? ? metalc13 metalc ? ? R RB . RB ? ? ? 1_555 CA HOH . O ? ? C RB 1019 D HOH 2004 1_555 ? ? ? ? ? ? ? 2.864 ? ? metalc14 metalc ? ? S RB . RB ? ? ? 1_555 CA HOH . O ? ? C RB 1020 D HOH 2011 1_555 ? ? ? ? ? ? ? 2.611 ? ? metalc15 metalc ? ? BA HOH . O ? ? ? 1_555 V RB . RB ? ? C HOH 2001 D RB 1016 1_555 ? ? ? ? ? ? ? 3.155 ? ? metalc16 metalc ? ? D GLY 2 O ? ? ? 1_555 V RB . RB ? ? D GLY 2 D RB 1016 1_555 ? ? ? ? ? ? ? 3.135 ? ? metalc17 metalc ? ? D DVA 8 N ? ? ? 1_555 W RB . RB ? ? D DVA 8 D RB 1017 1_555 ? ? ? ? ? ? ? 3.150 ? ? metalc18 metalc ? ? V RB . RB ? ? ? 1_555 CA HOH . O ? ? D RB 1016 D HOH 2006 1_555 ? ? ? ? ? ? ? 3.105 ? ? metalc19 metalc ? ? W RB . RB ? ? ? 1_555 CA HOH . O ? ? D RB 1017 D HOH 2002 1_555 ? ? ? ? ? ? ? 2.938 ? ? metalc20 metalc ? ? X RB . RB ? ? ? 1_555 CA HOH . O ? ? D RB 1018 D HOH 2004 1_555 ? ? ? ? ? ? ? 2.935 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? CA ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel CA 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 2 ? TRP A 15 ? GLY A 2 TRP A 15 AA 2 GLY B 2 ? TRP B 15 ? GLY B 2 TRP B 15 CA 1 GLY C 2 ? TRP C 15 ? GLY C 2 TRP C 15 CA 2 GLY D 2 ? TRP D 15 ? GLY D 2 TRP D 15 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N DLE A 14 ? N DLE A 14 O GLY B 2 ? O GLY B 2 CA 1 2 N DLE C 14 ? N DLE C 14 O GLY D 2 ? O GLY D 2 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A RB 1017 ? 9 'BINDING SITE FOR RESIDUE RB A 1017' AC2 Software A RB 1018 ? 8 'BINDING SITE FOR RESIDUE RB A 1018' AC3 Software A CL 1019 ? 8 'BINDING SITE FOR RESIDUE CL A 1019' AC4 Software A CL 1020 ? 3 'BINDING SITE FOR RESIDUE CL A 1020' AC5 Software B RB 1016 ? 4 'BINDING SITE FOR RESIDUE RB B 1016' AC6 Software B RB 1017 ? 10 'BINDING SITE FOR RESIDUE RB B 1017' AC7 Software B RB 1018 ? 8 'BINDING SITE FOR RESIDUE RB B 1018' AC8 Software B CL 1019 ? 8 'BINDING SITE FOR RESIDUE CL B 1019' AC9 Software B CL 1020 ? 4 'BINDING SITE FOR RESIDUE CL B 1020' BC1 Software B CL 1021 ? 1 'BINDING SITE FOR RESIDUE CL B 1021' BC2 Software C RB 1016 ? 7 'BINDING SITE FOR RESIDUE RB C 1016' BC3 Software C EOH 1017 ? 5 'BINDING SITE FOR RESIDUE EOH C 1017' BC4 Software C RB 1018 ? 7 'BINDING SITE FOR RESIDUE RB C 1018' BC5 Software C RB 1019 ? 11 'BINDING SITE FOR RESIDUE RB C 1019' BC6 Software C RB 1020 ? 8 'BINDING SITE FOR RESIDUE RB C 1020' BC7 Software C RB 1021 ? 10 'BINDING SITE FOR RESIDUE RB C 1021' BC8 Software C RB 1022 ? 9 'BINDING SITE FOR RESIDUE RB C 1022' BC9 Software D RB 1016 ? 7 'BINDING SITE FOR RESIDUE RB D 1016' CC1 Software D RB 1017 ? 9 'BINDING SITE FOR RESIDUE RB D 1017' CC2 Software D RB 1018 ? 7 'BINDING SITE FOR RESIDUE RB D 1018' CC3 Software D CL 1019 ? 7 'BINDING SITE FOR RESIDUE CL D 1019' CC4 Software ? ? ? ? 52 'BINDING SITE FOR CHAIN A OF GRAMICIDIN D' CC5 Software ? ? ? ? 52 'BINDING SITE FOR CHAIN B OF GRAMICIDIN D' CC6 Software ? ? ? ? 51 'BINDING SITE FOR CHAIN C OF GRAMICIDIN D' CC7 Software ? ? ? ? 48 'BINDING SITE FOR CHAIN D OF GRAMICIDIN D' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 GLY A 2 ? GLY A 2 . ? 1_555 ? 2 AC1 9 DLE A 4 ? DLE A 4 . ? 1_555 ? 3 AC1 9 ALA A 5 ? ALA A 5 . ? 1_555 ? 4 AC1 9 RB F . ? RB A 1018 . ? 1_555 ? 5 AC1 9 HOH Z . ? HOH A 2002 . ? 1_555 ? 6 AC1 9 HOH Z . ? HOH A 2004 . ? 1_555 ? 7 AC1 9 DLE B 12 ? DLE B 12 . ? 1_555 ? 8 AC1 9 TRP B 15 ? TRP B 15 . ? 1_555 ? 9 AC1 9 RB T . ? RB C 1021 . ? 1_555 ? 10 AC2 8 GLY A 2 ? GLY A 2 . ? 1_555 ? 11 AC2 8 ALA A 5 ? ALA A 5 . ? 1_555 ? 12 AC2 8 RB E . ? RB A 1017 . ? 1_555 ? 13 AC2 8 HOH Z . ? HOH A 2004 . ? 1_555 ? 14 AC2 8 DLE B 14 ? DLE B 14 . ? 1_555 ? 15 AC2 8 TRP B 15 ? TRP B 15 . ? 1_555 ? 16 AC2 8 ETA B 16 ? ETA B 16 . ? 1_555 ? 17 AC2 8 RB T . ? RB C 1021 . ? 1_555 ? 18 AC3 8 TRP A 13 ? TRP A 13 . ? 1_555 ? 19 AC3 8 TRP A 15 ? TRP A 15 . ? 4_466 ? 20 AC3 8 HOH Z . ? HOH A 2007 . ? 4_466 ? 21 AC3 8 VAL B 7 ? VAL B 7 . ? 4_466 ? 22 AC3 8 TRP B 9 ? TRP B 9 . ? 1_555 ? 23 AC3 8 TRP C 13 ? TRP C 13 . ? 4_456 ? 24 AC3 8 TRP C 15 ? TRP C 15 . ? 1_565 ? 25 AC3 8 TRP D 9 ? TRP D 9 . ? 4_456 ? 26 AC4 3 TRP A 15 ? TRP A 15 . ? 1_555 ? 27 AC4 3 ETA A 16 ? ETA A 16 . ? 1_555 ? 28 AC4 3 TRP C 9 ? TRP C 9 . ? 4_556 ? 29 AC5 4 DLE A 14 ? DLE A 14 . ? 1_555 ? 30 AC5 4 ETA A 16 ? ETA A 16 . ? 1_555 ? 31 AC5 4 GLY B 2 ? GLY B 2 . ? 1_555 ? 32 AC5 4 RB O . ? RB C 1016 . ? 1_555 ? 33 AC6 10 DVA A 8 ? DVA A 8 . ? 1_555 ? 34 AC6 10 DLE A 10 ? DLE A 10 . ? 1_555 ? 35 AC6 10 HOH Z . ? HOH A 2005 . ? 1_555 ? 36 AC6 10 DVA B 6 ? DVA B 6 . ? 1_555 ? 37 AC6 10 VAL B 7 ? VAL B 7 . ? 1_555 ? 38 AC6 10 DVA B 8 ? DVA B 8 . ? 1_555 ? 39 AC6 10 RB K . ? RB B 1018 . ? 1_555 ? 40 AC6 10 HOH AA . ? HOH B 2002 . ? 1_555 ? 41 AC6 10 HOH AA . ? HOH B 2003 . ? 1_555 ? 42 AC6 10 HOH AA . ? HOH B 2005 . ? 1_555 ? 43 AC7 8 DVA A 8 ? DVA A 8 . ? 1_555 ? 44 AC7 8 DLE A 10 ? DLE A 10 . ? 1_555 ? 45 AC7 8 DVA B 8 ? DVA B 8 . ? 1_555 ? 46 AC7 8 TRP B 11 ? TRP B 11 . ? 1_555 ? 47 AC7 8 RB J . ? RB B 1017 . ? 1_555 ? 48 AC7 8 HOH AA . ? HOH B 2004 . ? 1_555 ? 49 AC7 8 HOH AA . ? HOH B 2005 . ? 1_555 ? 50 AC7 8 HOH AA . ? HOH B 2008 . ? 1_555 ? 51 AC8 8 DLE A 4 ? DLE A 4 . ? 1_555 ? 52 AC8 8 TRP B 11 ? TRP B 11 . ? 1_555 ? 53 AC8 8 CL M . ? CL B 1020 . ? 3_646 ? 54 AC8 8 HOH AA . ? HOH B 2006 . ? 3_646 ? 55 AC8 8 TRP C 9 ? TRP C 9 . ? 3_656 ? 56 AC8 8 TRP D 13 ? TRP D 13 . ? 1_555 ? 57 AC8 8 DLE D 14 ? DLE D 14 . ? 3_656 ? 58 AC8 8 TRP D 15 ? TRP D 15 . ? 3_656 ? 59 AC9 4 TRP B 9 ? TRP B 9 . ? 1_555 ? 60 AC9 4 CL L . ? CL B 1019 . ? 3_656 ? 61 AC9 4 HOH AA . ? HOH B 2006 . ? 1_555 ? 62 AC9 4 TRP D 15 ? TRP D 15 . ? 1_565 ? 63 BC1 1 TRP B 13 ? TRP B 13 . ? 1_555 ? 64 BC2 7 DLE A 12 ? DLE A 12 . ? 1_555 ? 65 BC2 7 DLE A 14 ? DLE A 14 . ? 1_555 ? 66 BC2 7 HOH Z . ? HOH A 2006 . ? 1_555 ? 67 BC2 7 GLY B 2 ? GLY B 2 . ? 1_555 ? 68 BC2 7 DLE B 4 ? DLE B 4 . ? 1_555 ? 69 BC2 7 RB I . ? RB B 1016 . ? 1_555 ? 70 BC2 7 HOH AA . ? HOH B 2002 . ? 1_555 ? 71 BC3 5 TRP A 9 ? TRP A 9 . ? 3_746 ? 72 BC3 5 DLE C 4 ? DLE C 4 . ? 1_555 ? 73 BC3 5 ALA C 5 ? ALA C 5 . ? 1_555 ? 74 BC3 5 RB U . ? RB C 1022 . ? 1_555 ? 75 BC3 5 ETA D 16 ? ETA D 16 . ? 1_555 ? 76 BC4 7 DLE C 14 ? DLE C 14 . ? 1_555 ? 77 BC4 7 TRP C 15 ? TRP C 15 . ? 1_555 ? 78 BC4 7 ETA C 16 ? ETA C 16 . ? 1_555 ? 79 BC4 7 GLY D 2 ? GLY D 2 . ? 1_555 ? 80 BC4 7 ALA D 5 ? ALA D 5 . ? 1_555 ? 81 BC4 7 RB V . ? RB D 1016 . ? 1_555 ? 82 BC4 7 HOH CA . ? HOH D 2006 . ? 1_555 ? 83 BC5 11 DVA C 6 ? DVA C 6 . ? 1_555 ? 84 BC5 11 VAL C 7 ? VAL C 7 . ? 1_555 ? 85 BC5 11 RB S . ? RB C 1020 . ? 1_555 ? 86 BC5 11 RB U . ? RB C 1022 . ? 1_555 ? 87 BC5 11 TRP D 13 ? TRP D 13 . ? 1_555 ? 88 BC5 11 DLE D 14 ? DLE D 14 . ? 1_555 ? 89 BC5 11 TRP D 15 ? TRP D 15 . ? 1_555 ? 90 BC5 11 HOH CA . ? HOH D 2004 . ? 1_555 ? 91 BC5 11 HOH CA . ? HOH D 2009 . ? 1_555 ? 92 BC5 11 HOH CA . ? HOH D 2010 . ? 1_555 ? 93 BC5 11 HOH CA . ? HOH D 2011 . ? 1_555 ? 94 BC6 8 GLY C 2 ? GLY C 2 . ? 1_555 ? 95 BC6 8 DLE C 4 ? DLE C 4 . ? 1_555 ? 96 BC6 8 ALA C 5 ? ALA C 5 . ? 1_555 ? 97 BC6 8 RB R . ? RB C 1019 . ? 1_555 ? 98 BC6 8 RB U . ? RB C 1022 . ? 1_555 ? 99 BC6 8 DLE D 14 ? DLE D 14 . ? 1_555 ? 100 BC6 8 HOH CA . ? HOH D 2010 . ? 1_555 ? 101 BC6 8 HOH CA . ? HOH D 2011 . ? 1_555 ? 102 BC7 10 DLE A 4 ? DLE A 4 . ? 1_555 ? 103 BC7 10 ALA A 5 ? ALA A 5 . ? 1_555 ? 104 BC7 10 VAL A 7 ? VAL A 7 . ? 1_555 ? 105 BC7 10 RB E . ? RB A 1017 . ? 1_555 ? 106 BC7 10 RB F . ? RB A 1018 . ? 1_555 ? 107 BC7 10 HOH Z . ? HOH A 2002 . ? 1_555 ? 108 BC7 10 DLE B 12 ? DLE B 12 . ? 1_555 ? 109 BC7 10 DLE B 14 ? DLE B 14 . ? 1_555 ? 110 BC7 10 TRP B 15 ? TRP B 15 . ? 1_555 ? 111 BC7 10 HOH AA . ? HOH B 2007 . ? 1_555 ? 112 BC8 9 GLY C 2 ? GLY C 2 . ? 1_555 ? 113 BC8 9 ALA C 5 ? ALA C 5 . ? 1_555 ? 114 BC8 9 EOH P . ? EOH C 1017 . ? 1_555 ? 115 BC8 9 RB R . ? RB C 1019 . ? 1_555 ? 116 BC8 9 RB S . ? RB C 1020 . ? 1_555 ? 117 BC8 9 DLE D 14 ? DLE D 14 . ? 1_555 ? 118 BC8 9 TRP D 15 ? TRP D 15 . ? 1_555 ? 119 BC8 9 ETA D 16 ? ETA D 16 . ? 1_555 ? 120 BC8 9 HOH CA . ? HOH D 2010 . ? 1_555 ? 121 BC9 7 DLE C 12 ? DLE C 12 . ? 1_555 ? 122 BC9 7 DLE C 14 ? DLE C 14 . ? 1_555 ? 123 BC9 7 RB Q . ? RB C 1018 . ? 1_555 ? 124 BC9 7 HOH BA . ? HOH C 2003 . ? 1_555 ? 125 BC9 7 GLY D 2 ? GLY D 2 . ? 1_555 ? 126 BC9 7 DLE D 4 ? DLE D 4 . ? 1_555 ? 127 BC9 7 HOH CA . ? HOH D 2002 . ? 1_555 ? 128 CC1 9 DVA C 8 ? DVA C 8 . ? 1_555 ? 129 CC1 9 DLE C 10 ? DLE C 10 . ? 1_555 ? 130 CC1 9 HOH BA . ? HOH C 2001 . ? 1_555 ? 131 CC1 9 DVA D 6 ? DVA D 6 . ? 1_555 ? 132 CC1 9 VAL D 7 ? VAL D 7 . ? 1_555 ? 133 CC1 9 DVA D 8 ? DVA D 8 . ? 1_555 ? 134 CC1 9 RB X . ? RB D 1018 . ? 1_555 ? 135 CC1 9 HOH CA . ? HOH D 2002 . ? 1_555 ? 136 CC1 9 HOH CA . ? HOH D 2008 . ? 1_555 ? 137 CC2 7 DVA C 8 ? DVA C 8 . ? 1_555 ? 138 CC2 7 DLE C 10 ? DLE C 10 . ? 1_555 ? 139 CC2 7 DVA D 8 ? DVA D 8 . ? 1_555 ? 140 CC2 7 DLE D 10 ? DLE D 10 . ? 1_555 ? 141 CC2 7 RB W . ? RB D 1017 . ? 1_555 ? 142 CC2 7 HOH CA . ? HOH D 2004 . ? 1_555 ? 143 CC2 7 HOH CA . ? HOH D 2007 . ? 1_555 ? 144 CC3 7 DLE A 10 ? DLE A 10 . ? 1_555 ? 145 CC3 7 DLE B 12 ? DLE B 12 . ? 1_555 ? 146 CC3 7 TRP B 13 ? TRP B 13 . ? 1_555 ? 147 CC3 7 DLE B 14 ? DLE B 14 . ? 3_746 ? 148 CC3 7 TRP B 15 ? TRP B 15 . ? 3_746 ? 149 CC3 7 DLE C 4 ? DLE C 4 . ? 1_555 ? 150 CC3 7 TRP D 11 ? TRP D 11 . ? 1_555 ? 151 CC4 52 RB E . ? RB A 1017 . ? 1_555 ? 152 CC4 52 RB F . ? RB A 1018 . ? 1_555 ? 153 CC4 52 CL G . ? CL A 1019 . ? 1_555 ? 154 CC4 52 CL G . ? CL A 1019 . ? 4_566 ? 155 CC4 52 CL H . ? CL A 1020 . ? 1_555 ? 156 CC4 52 HOH Z . ? HOH A 2003 . ? 1_555 ? 157 CC4 52 HOH Z . ? HOH A 2004 . ? 1_555 ? 158 CC4 52 HOH Z . ? HOH A 2005 . ? 1_555 ? 159 CC4 52 HOH Z . ? HOH A 2007 . ? 1_555 ? 160 CC4 52 GLY B 2 ? GLY B 2 . ? 1_555 ? 161 CC4 52 GLY B 2 ? GLY B 2 . ? 2_665 ? 162 CC4 52 ALA B 3 ? ALA B 3 . ? 2_665 ? 163 CC4 52 ALA B 3 ? ALA B 3 . ? 1_555 ? 164 CC4 52 DLE B 4 ? DLE B 4 . ? 1_555 ? 165 CC4 52 ALA B 5 ? ALA B 5 . ? 1_555 ? 166 CC4 52 DVA B 6 ? DVA B 6 . ? 1_555 ? 167 CC4 52 VAL B 7 ? VAL B 7 . ? 1_555 ? 168 CC4 52 DVA B 8 ? DVA B 8 . ? 1_555 ? 169 CC4 52 TRP B 9 ? TRP B 9 . ? 4_566 ? 170 CC4 52 TRP B 9 ? TRP B 9 . ? 1_555 ? 171 CC4 52 DLE B 10 ? DLE B 10 . ? 1_555 ? 172 CC4 52 TRP B 11 ? TRP B 11 . ? 1_555 ? 173 CC4 52 DLE B 12 ? DLE B 12 . ? 1_555 ? 174 CC4 52 TRP B 13 ? TRP B 13 . ? 1_555 ? 175 CC4 52 DLE B 14 ? DLE B 14 . ? 1_555 ? 176 CC4 52 TRP B 15 ? TRP B 15 . ? 1_555 ? 177 CC4 52 ETA B 16 ? ETA B 16 . ? 1_555 ? 178 CC4 52 RB I . ? RB B 1016 . ? 1_555 ? 179 CC4 52 RB J . ? RB B 1017 . ? 1_555 ? 180 CC4 52 RB K . ? RB B 1018 . ? 1_555 ? 181 CC4 52 CL L . ? CL B 1019 . ? 1_555 ? 182 CC4 52 DLE C 4 ? DLE C 4 . ? 3_756 ? 183 CC4 52 TRP C 9 ? TRP C 9 . ? 4_556 ? 184 CC4 52 TRP C 11 ? TRP C 11 . ? 1_555 ? 185 CC4 52 DLE C 12 ? DLE C 12 . ? 4_456 ? 186 CC4 52 TRP C 13 ? TRP C 13 . ? 4_456 ? 187 CC4 52 DLE C 14 ? DLE C 14 . ? 1_565 ? 188 CC4 52 TRP C 15 ? TRP C 15 . ? 4_556 ? 189 CC4 52 TRP C 15 ? TRP C 15 . ? 1_565 ? 190 CC4 52 ETA C 16 ? ETA C 16 . ? 4_556 ? 191 CC4 52 RB O . ? RB C 1016 . ? 1_555 ? 192 CC4 52 EOH P . ? EOH C 1017 . ? 3_756 ? 193 CC4 52 RB T . ? RB C 1021 . ? 1_555 ? 194 CC4 52 DVA D 6 ? DVA D 6 . ? 4_556 ? 195 CC4 52 DVA D 8 ? DVA D 8 . ? 1_565 ? 196 CC4 52 TRP D 9 ? TRP D 9 . ? 4_456 ? 197 CC4 52 DLE D 10 ? DLE D 10 . ? 3_756 ? 198 CC4 52 TRP D 11 ? TRP D 11 . ? 1_555 ? 199 CC4 52 TRP D 11 ? TRP D 11 . ? 3_756 ? 200 CC4 52 TRP D 13 ? TRP D 13 . ? 3_656 ? 201 CC4 52 TRP D 15 ? TRP D 15 . ? 1_565 ? 202 CC4 52 CL Y . ? CL D 1019 . ? 1_555 ? 203 CC5 52 GLY A 2 ? GLY A 2 . ? 2_664 ? 204 CC5 52 GLY A 2 ? GLY A 2 . ? 1_555 ? 205 CC5 52 ALA A 3 ? ALA A 3 . ? 2_664 ? 206 CC5 52 ALA A 3 ? ALA A 3 . ? 1_555 ? 207 CC5 52 DLE A 4 ? DLE A 4 . ? 1_555 ? 208 CC5 52 ALA A 5 ? ALA A 5 . ? 1_555 ? 209 CC5 52 DVA A 6 ? DVA A 6 . ? 1_555 ? 210 CC5 52 VAL A 7 ? VAL A 7 . ? 1_555 ? 211 CC5 52 DVA A 8 ? DVA A 8 . ? 1_555 ? 212 CC5 52 TRP A 9 ? TRP A 9 . ? 1_555 ? 213 CC5 52 DLE A 10 ? DLE A 10 . ? 1_555 ? 214 CC5 52 TRP A 11 ? TRP A 11 . ? 1_555 ? 215 CC5 52 DLE A 12 ? DLE A 12 . ? 1_555 ? 216 CC5 52 TRP A 13 ? TRP A 13 . ? 1_555 ? 217 CC5 52 DLE A 14 ? DLE A 14 . ? 1_555 ? 218 CC5 52 TRP A 15 ? TRP A 15 . ? 1_555 ? 219 CC5 52 TRP A 15 ? TRP A 15 . ? 4_466 ? 220 CC5 52 ETA A 16 ? ETA A 16 . ? 1_555 ? 221 CC5 52 RB E . ? RB A 1017 . ? 1_555 ? 222 CC5 52 RB F . ? RB A 1018 . ? 1_555 ? 223 CC5 52 CL G . ? CL A 1019 . ? 1_555 ? 224 CC5 52 CL G . ? CL A 1019 . ? 4_566 ? 225 CC5 52 RB I . ? RB B 1016 . ? 1_555 ? 226 CC5 52 RB J . ? RB B 1017 . ? 1_555 ? 227 CC5 52 RB K . ? RB B 1018 . ? 1_555 ? 228 CC5 52 CL L . ? CL B 1019 . ? 1_555 ? 229 CC5 52 CL M . ? CL B 1020 . ? 1_555 ? 230 CC5 52 CL N . ? CL B 1021 . ? 2_664 ? 231 CC5 52 CL N . ? CL B 1021 . ? 1_555 ? 232 CC5 52 HOH AA . ? HOH B 2001 . ? 1_555 ? 233 CC5 52 HOH AA . ? HOH B 2004 . ? 1_555 ? 234 CC5 52 HOH AA . ? HOH B 2007 . ? 1_555 ? 235 CC5 52 DVA C 6 ? DVA C 6 . ? 3_756 ? 236 CC5 52 VAL C 7 ? VAL C 7 . ? 1_565 ? 237 CC5 52 TRP C 9 ? TRP C 9 . ? 3_656 ? 238 CC5 52 TRP C 11 ? TRP C 11 . ? 1_555 ? 239 CC5 52 TRP C 15 ? TRP C 15 . ? 4_556 ? 240 CC5 52 ETA C 16 ? ETA C 16 . ? 4_556 ? 241 CC5 52 RB O . ? RB C 1016 . ? 1_555 ? 242 CC5 52 RB T . ? RB C 1021 . ? 1_555 ? 243 CC5 52 DVA D 6 ? DVA D 6 . ? 4_556 ? 244 CC5 52 TRP D 9 ? TRP D 9 . ? 3_756 ? 245 CC5 52 TRP D 11 ? TRP D 11 . ? 1_555 ? 246 CC5 52 TRP D 11 ? TRP D 11 . ? 3_756 ? 247 CC5 52 DLE D 12 ? DLE D 12 . ? 1_555 ? 248 CC5 52 TRP D 13 ? TRP D 13 . ? 1_555 ? 249 CC5 52 TRP D 13 ? TRP D 13 . ? 3_656 ? 250 CC5 52 DLE D 14 ? DLE D 14 . ? 3_656 ? 251 CC5 52 TRP D 15 ? TRP D 15 . ? 1_565 ? 252 CC5 52 TRP D 15 ? TRP D 15 . ? 3_656 ? 253 CC5 52 CL Y . ? CL D 1019 . ? 3_756 ? 254 CC5 52 CL Y . ? CL D 1019 . ? 1_555 ? 255 CC6 51 TRP A 9 ? TRP A 9 . ? 3_746 ? 256 CC6 51 TRP A 9 ? TRP A 9 . ? 4_456 ? 257 CC6 51 TRP A 11 ? TRP A 11 . ? 1_555 ? 258 CC6 51 TRP A 13 ? TRP A 13 . ? 4_556 ? 259 CC6 51 DLE A 14 ? DLE A 14 . ? 1_545 ? 260 CC6 51 TRP A 15 ? TRP A 15 . ? 4_456 ? 261 CC6 51 TRP A 15 ? TRP A 15 . ? 1_545 ? 262 CC6 51 ETA A 16 ? ETA A 16 . ? 4_456 ? 263 CC6 51 CL G . ? CL A 1019 . ? 1_545 ? 264 CC6 51 CL G . ? CL A 1019 . ? 4_556 ? 265 CC6 51 CL H . ? CL A 1020 . ? 4_456 ? 266 CC6 51 HOH Z . ? HOH A 2008 . ? 1_545 ? 267 CC6 51 DLE B 4 ? DLE B 4 . ? 1_555 ? 268 CC6 51 DVA B 6 ? DVA B 6 . ? 4_456 ? 269 CC6 51 VAL B 7 ? VAL B 7 . ? 4_456 ? 270 CC6 51 TRP B 11 ? TRP B 11 . ? 3_646 ? 271 CC6 51 TRP B 11 ? TRP B 11 . ? 1_555 ? 272 CC6 51 TRP B 13 ? TRP B 13 . ? 3_746 ? 273 CC6 51 TRP B 15 ? TRP B 15 . ? 1_545 ? 274 CC6 51 ETA B 16 ? ETA B 16 . ? 3_646 ? 275 CC6 51 CL L . ? CL B 1019 . ? 3_646 ? 276 CC6 51 HOH AA . ? HOH B 2006 . ? 1_545 ? 277 CC6 51 EOH P . ? EOH C 1017 . ? 1_555 ? 278 CC6 51 RB Q . ? RB C 1018 . ? 1_555 ? 279 CC6 51 RB R . ? RB C 1019 . ? 1_555 ? 280 CC6 51 RB S . ? RB C 1020 . ? 1_555 ? 281 CC6 51 RB U . ? RB C 1022 . ? 1_555 ? 282 CC6 51 HOH BA . ? HOH C 2001 . ? 1_555 ? 283 CC6 51 HOH BA . ? HOH C 2002 . ? 1_555 ? 284 CC6 51 GLY D 2 ? GLY D 2 . ? 1_555 ? 285 CC6 51 GLY D 2 ? GLY D 2 . ? 2_655 ? 286 CC6 51 ALA D 3 ? ALA D 3 . ? 2_655 ? 287 CC6 51 ALA D 3 ? ALA D 3 . ? 1_555 ? 288 CC6 51 DLE D 4 ? DLE D 4 . ? 1_555 ? 289 CC6 51 ALA D 5 ? ALA D 5 . ? 1_555 ? 290 CC6 51 DVA D 6 ? DVA D 6 . ? 1_555 ? 291 CC6 51 VAL D 7 ? VAL D 7 . ? 1_555 ? 292 CC6 51 DVA D 8 ? DVA D 8 . ? 1_555 ? 293 CC6 51 TRP D 9 ? TRP D 9 . ? 1_555 ? 294 CC6 51 DLE D 10 ? DLE D 10 . ? 1_555 ? 295 CC6 51 TRP D 11 ? TRP D 11 . ? 1_555 ? 296 CC6 51 DLE D 12 ? DLE D 12 . ? 1_555 ? 297 CC6 51 TRP D 13 ? TRP D 13 . ? 1_555 ? 298 CC6 51 DLE D 14 ? DLE D 14 . ? 1_555 ? 299 CC6 51 TRP D 15 ? TRP D 15 . ? 1_555 ? 300 CC6 51 ETA D 16 ? ETA D 16 . ? 1_555 ? 301 CC6 51 RB V . ? RB D 1016 . ? 1_555 ? 302 CC6 51 RB W . ? RB D 1017 . ? 1_555 ? 303 CC6 51 RB X . ? RB D 1018 . ? 1_555 ? 304 CC6 51 CL Y . ? CL D 1019 . ? 1_555 ? 305 CC6 51 HOH CA . ? HOH D 2003 . ? 1_555 ? 306 CC7 48 DVA A 6 ? DVA A 6 . ? 3_646 ? 307 CC7 48 VAL A 7 ? VAL A 7 . ? 1_545 ? 308 CC7 48 TRP A 11 ? TRP A 11 . ? 1_555 ? 309 CC7 48 TRP A 13 ? TRP A 13 . ? 4_556 ? 310 CC7 48 DLE A 14 ? DLE A 14 . ? 1_545 ? 311 CC7 48 ETA A 16 ? ETA A 16 . ? 4_456 ? 312 CC7 48 CL G . ? CL A 1019 . ? 4_556 ? 313 CC7 48 DVA B 6 ? DVA B 6 . ? 4_456 ? 314 CC7 48 TRP B 9 ? TRP B 9 . ? 3_646 ? 315 CC7 48 DLE B 10 ? DLE B 10 . ? 3_646 ? 316 CC7 48 TRP B 11 ? TRP B 11 . ? 3_646 ? 317 CC7 48 TRP B 11 ? TRP B 11 . ? 1_555 ? 318 CC7 48 DLE B 12 ? DLE B 12 . ? 1_555 ? 319 CC7 48 TRP B 13 ? TRP B 13 . ? 3_746 ? 320 CC7 48 DLE B 14 ? DLE B 14 . ? 3_746 ? 321 CC7 48 TRP B 15 ? TRP B 15 . ? 1_545 ? 322 CC7 48 CL L . ? CL B 1019 . ? 1_555 ? 323 CC7 48 CL L . ? CL B 1019 . ? 3_646 ? 324 CC7 48 CL M . ? CL B 1020 . ? 1_545 ? 325 CC7 48 GLY C 2 ? GLY C 2 . ? 2_654 ? 326 CC7 48 GLY C 2 ? GLY C 2 . ? 1_555 ? 327 CC7 48 ALA C 3 ? ALA C 3 . ? 2_654 ? 328 CC7 48 ALA C 3 ? ALA C 3 . ? 1_555 ? 329 CC7 48 DLE C 4 ? DLE C 4 . ? 1_555 ? 330 CC7 48 ALA C 5 ? ALA C 5 . ? 1_555 ? 331 CC7 48 DVA C 6 ? DVA C 6 . ? 1_555 ? 332 CC7 48 VAL C 7 ? VAL C 7 . ? 1_555 ? 333 CC7 48 DVA C 8 ? DVA C 8 . ? 1_555 ? 334 CC7 48 TRP C 9 ? TRP C 9 . ? 1_555 ? 335 CC7 48 DLE C 10 ? DLE C 10 . ? 1_555 ? 336 CC7 48 TRP C 11 ? TRP C 11 . ? 1_555 ? 337 CC7 48 DLE C 12 ? DLE C 12 . ? 1_555 ? 338 CC7 48 TRP C 13 ? TRP C 13 . ? 1_555 ? 339 CC7 48 DLE C 14 ? DLE C 14 . ? 1_555 ? 340 CC7 48 TRP C 15 ? TRP C 15 . ? 1_555 ? 341 CC7 48 ETA C 16 ? ETA C 16 . ? 1_555 ? 342 CC7 48 EOH P . ? EOH C 1017 . ? 1_555 ? 343 CC7 48 RB Q . ? RB C 1018 . ? 1_555 ? 344 CC7 48 RB R . ? RB C 1019 . ? 1_555 ? 345 CC7 48 RB S . ? RB C 1020 . ? 1_555 ? 346 CC7 48 RB U . ? RB C 1022 . ? 1_555 ? 347 CC7 48 RB V . ? RB D 1016 . ? 1_555 ? 348 CC7 48 RB W . ? RB D 1017 . ? 1_555 ? 349 CC7 48 RB X . ? RB D 1018 . ? 1_555 ? 350 CC7 48 CL Y . ? CL D 1019 . ? 1_555 ? 351 CC7 48 HOH CA . ? HOH D 2003 . ? 1_555 ? 352 CC7 48 HOH CA . ? HOH D 2006 . ? 1_555 ? 353 CC7 48 HOH CA . ? HOH D 2009 . ? 1_555 ? # _database_PDB_matrix.entry_id 1W5U _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1W5U _atom_sites.fract_transf_matrix[1][1] 0.033267 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031949 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019346 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O RB # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 FVA 1 1 1 FVA FVA A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 DLE 4 4 4 DLE DLE A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 DVA 6 6 6 DVA DVA A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 DVA 8 8 8 DVA DVA A . n A 1 9 TRP 9 9 9 TRP TRP A . n A 1 10 DLE 10 10 10 DLE DLE A . n A 1 11 TRP 11 11 11 TRP TRP A . y A 1 12 DLE 12 12 12 DLE DLE A . n A 1 13 TRP 13 13 13 TRP TRP A . n A 1 14 DLE 14 14 14 DLE DLE A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 ETA 16 16 16 ETA ETA A . n B 1 1 FVA 1 1 1 FVA FVA B . n B 1 2 GLY 2 2 2 GLY GLY B . n B 1 3 ALA 3 3 3 ALA ALA B . n B 1 4 DLE 4 4 4 DLE DLE B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 DVA 6 6 6 DVA DVA B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 DVA 8 8 8 DVA DVA B . n B 1 9 TRP 9 9 9 TRP TRP B . n B 1 10 DLE 10 10 10 DLE DLE B . n B 1 11 TRP 11 11 11 TRP TRP B . y B 1 11 TYR 11 11 11 TYR TYR B . y B 1 12 DLE 12 12 12 DLE DLE B . n B 1 13 TRP 13 13 13 TRP TRP B . n B 1 14 DLE 14 14 14 DLE DLE B . n B 1 15 TRP 15 15 15 TRP TRP B . n B 1 16 ETA 16 16 16 ETA ETA B . n C 1 1 FVA 1 1 1 FVA FVA C . n C 1 2 GLY 2 2 2 GLY GLY C . n C 1 3 ALA 3 3 3 ALA ALA C . n C 1 4 DLE 4 4 4 DLE DLE C . n C 1 5 ALA 5 5 5 ALA ALA C . n C 1 6 DVA 6 6 6 DVA DVA C . n C 1 7 VAL 7 7 7 VAL VAL C . n C 1 8 DVA 8 8 8 DVA DVA C . n C 1 9 TRP 9 9 9 TRP TRP C . n C 1 10 DLE 10 10 10 DLE DLE C . n C 1 11 TRP 11 11 11 TRP TRP C . y C 1 12 DLE 12 12 12 DLE DLE C . n C 1 13 TRP 13 13 13 TRP TRP C . n C 1 14 DLE 14 14 14 DLE DLE C . n C 1 15 TRP 15 15 15 TRP TRP C . n C 1 16 ETA 16 16 16 ETA ETA C . n D 1 1 FVA 1 1 1 FVA FVA D . n D 1 2 GLY 2 2 2 GLY GLY D . n D 1 3 ALA 3 3 3 ALA ALA D . n D 1 4 DLE 4 4 4 DLE DLE D . n D 1 5 ALA 5 5 5 ALA ALA D . n D 1 6 DVA 6 6 6 DVA DVA D . n D 1 7 VAL 7 7 7 VAL VAL D . n D 1 8 DVA 8 8 8 DVA DVA D . n D 1 9 TRP 9 9 9 TRP TRP D . n D 1 10 DLE 10 10 10 DLE DLE D . n D 1 11 TRP 11 11 11 TRP TRP D . y D 1 11 TYR 11 11 11 TYR TYR D . y D 1 12 DLE 12 12 12 DLE DLE D . n D 1 13 TRP 13 13 13 TRP TRP D . n D 1 14 DLE 14 14 14 DLE DLE D . n D 1 15 TRP 15 15 15 TRP TRP D . n D 1 16 ETA 16 16 16 ETA ETA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 RB 1 1017 1017 RB RB A . F 2 RB 1 1018 1018 RB RB A . G 3 CL 1 1019 1019 CL CL A . H 3 CL 1 1020 1020 CL CL A . I 2 RB 1 1016 1016 RB RB B . J 2 RB 1 1017 1017 RB RB B . K 2 RB 1 1018 1018 RB RB B . L 3 CL 1 1019 1019 CL CL B . M 3 CL 1 1020 1020 CL CL B . N 3 CL 1 1021 1021 CL CL B . O 2 RB 1 1016 1016 RB RB C . P 4 EOH 1 1017 1017 EOH EOH C . Q 2 RB 1 1018 1018 RB RB C . R 2 RB 1 1019 1019 RB RB C . S 2 RB 1 1020 1020 RB RB C . T 2 RB 1 1021 1021 RB RB C . U 2 RB 1 1022 1022 RB RB C . V 2 RB 1 1016 1016 RB RB D . W 2 RB 1 1017 1017 RB RB D . X 2 RB 1 1018 1018 RB RB D . Y 3 CL 1 1019 1019 CL CL D . Z 5 HOH 1 2001 2001 HOH HOH A . Z 5 HOH 2 2002 2002 HOH HOH A . Z 5 HOH 3 2003 2003 HOH HOH A . Z 5 HOH 4 2004 2004 HOH HOH A . Z 5 HOH 5 2005 2005 HOH HOH A . Z 5 HOH 6 2006 2006 HOH HOH A . Z 5 HOH 7 2007 2007 HOH HOH A . Z 5 HOH 8 2008 2008 HOH HOH A . AA 5 HOH 1 2001 2001 HOH HOH B . AA 5 HOH 2 2002 2002 HOH HOH B . AA 5 HOH 3 2003 2003 HOH HOH B . AA 5 HOH 4 2004 2004 HOH HOH B . AA 5 HOH 5 2005 2005 HOH HOH B . AA 5 HOH 6 2006 2006 HOH HOH B . AA 5 HOH 7 2007 2007 HOH HOH B . AA 5 HOH 8 2008 2008 HOH HOH B . BA 5 HOH 1 2001 2001 HOH HOH C . BA 5 HOH 2 2002 2002 HOH HOH C . BA 5 HOH 3 2003 2003 HOH HOH C . CA 5 HOH 1 2001 2001 HOH HOH D . CA 5 HOH 2 2002 2002 HOH HOH D . CA 5 HOH 3 2003 2003 HOH HOH D . CA 5 HOH 4 2004 2004 HOH HOH D . CA 5 HOH 5 2005 2005 HOH HOH D . CA 5 HOH 6 2006 2006 HOH HOH D . CA 5 HOH 7 2007 2007 HOH HOH D . CA 5 HOH 8 2008 2008 HOH HOH D . CA 5 HOH 9 2009 2009 HOH HOH D . CA 5 HOH 10 2010 2010 HOH HOH D . CA 5 HOH 11 2011 2011 HOH HOH D . CA 5 HOH 12 2012 2012 HOH HOH D . # _pdbx_molecule_features.prd_id PRD_000152 _pdbx_molecule_features.name 'GRAMICIDIN D' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;GRAMICIDIN D IS A HEXADECAMERIC HELICAL PEPTIDE WITH ALTERNATING D,L CHARACTERISTICS. THE N-TERM IS FORMYLATED (RESIDUE 1). THE C-TERM IS CAPPED WITH ETHANOLAMINE (RESIDUE 16). ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000152 A 2 PRD_000152 B 3 PRD_000152 C 4 PRD_000152 D # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A FVA 1 A FVA 1 ? VAL N-FORMYL-L-VALINE 2 B FVA 1 B FVA 1 ? VAL N-FORMYL-L-VALINE 3 C FVA 1 C FVA 1 ? VAL N-FORMYL-L-VALINE 4 D FVA 1 D FVA 1 ? VAL N-FORMYL-L-VALINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PQS dimeric 2 2 software_defined_assembly PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,J,K,L,M,N,Z,AA 2 1 C,D,O,P,Q,R,S,T,U,V,W,X,Y,BA,CA # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2980 ? 1 MORE -34.7 ? 1 'SSA (A^2)' 3360 ? 2 'ABSA (A^2)' 3450 ? 2 MORE -30.8 ? 2 'SSA (A^2)' 3580 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? Z HOH . ? A HOH 2004 ? 1_555 RB ? E RB . ? A RB 1017 ? 1_555 O ? B DLE 12 ? B DLE 12 ? 1_555 116.1 ? 2 O ? B TRP 15 ? B TRP 15 ? 1_555 RB ? T RB . ? C RB 1021 ? 1_555 O ? AA HOH . ? B HOH 2007 ? 1_555 110.3 ? 3 O ? AA HOH . ? B HOH 2002 ? 1_555 RB ? J RB . ? B RB 1017 ? 1_555 O ? AA HOH . ? B HOH 2004 ? 1_555 162.5 ? 4 O ? C GLY 2 ? C GLY 2 ? 1_555 RB ? S RB . ? C RB 1020 ? 1_555 O ? CA HOH . ? D HOH 2011 ? 1_555 105.0 ? 5 N ? C ETA 16 ? C ETA 16 ? 1_555 RB ? Q RB . ? C RB 1018 ? 1_555 O ? BA HOH . ? C HOH 2003 ? 1_555 100.1 ? 6 O ? BA HOH . ? C HOH 2001 ? 1_555 RB ? V RB . ? D RB 1016 ? 1_555 O ? D GLY 2 ? D GLY 2 ? 1_555 134.9 ? 7 O ? BA HOH . ? C HOH 2001 ? 1_555 RB ? V RB . ? D RB 1016 ? 1_555 O ? CA HOH . ? D HOH 2006 ? 1_555 131.4 ? 8 O ? D GLY 2 ? D GLY 2 ? 1_555 RB ? V RB . ? D RB 1016 ? 1_555 O ? CA HOH . ? D HOH 2006 ? 1_555 89.7 ? 9 N ? D DVA 8 ? D DVA 8 ? 1_555 RB ? W RB . ? D RB 1017 ? 1_555 O ? CA HOH . ? D HOH 2002 ? 1_555 97.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-09-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-11-30 4 'Structure model' 1 3 2019-05-22 5 'Structure model' 2 0 2023-11-15 6 'Structure model' 2 1 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' 5 2 'Structure model' 'Version format compliance' 6 3 'Structure model' Other 7 4 'Structure model' 'Data collection' 8 4 'Structure model' Other 9 4 'Structure model' 'Refinement description' 10 5 'Structure model' 'Atomic model' 11 5 'Structure model' 'Data collection' 12 5 'Structure model' 'Database references' 13 5 'Structure model' 'Derived calculations' 14 5 'Structure model' Other 15 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_proc 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' refine 4 5 'Structure model' atom_site 5 5 'Structure model' atom_site_anisotrop 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 9 5 'Structure model' pdbx_database_status 10 5 'Structure model' pdbx_struct_conn_angle 11 5 'Structure model' struct_conn 12 5 'Structure model' struct_site 13 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 2 4 'Structure model' '_refine.pdbx_ls_cross_valid_method' 3 5 'Structure model' '_atom_site.auth_atom_id' 4 5 'Structure model' '_atom_site.label_atom_id' 5 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 6 5 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 7 5 'Structure model' '_database_2.pdbx_DOI' 8 5 'Structure model' '_database_2.pdbx_database_accession' 9 5 'Structure model' '_pdbx_database_status.status_code_sf' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.value' 27 5 'Structure model' '_struct_conn.conn_type_id' 28 5 'Structure model' '_struct_conn.id' 29 5 'Structure model' '_struct_conn.pdbx_dist_value' 30 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 31 5 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 32 5 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 33 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 34 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 35 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 36 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 37 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 38 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 39 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 40 5 'Structure model' '_struct_conn.ptnr1_symmetry' 41 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 42 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 43 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 44 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 45 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 46 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 47 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 48 5 'Structure model' '_struct_conn.ptnr2_symmetry' 49 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 50 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 51 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 1W5U _pdbx_entry_details.compound_details ;GRAMICIDIN IS A HETEROGENEOUS MIXTURE OF SEVERAL COMPOUNDS INCLUDING GRAMICIDIN A, B AND C WHICH ARE OBTAINED FROM BACILLUS BREVIS AND COLLECTIVELY CALLED GRAMICIDIN D HERE, GRAMICIDIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) GROUP: 1 NAME: GRAMICIDIN A CHAIN: A, C COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 16 DESCRIPTION: GRAMICIDIN D IS A HEXADECAMERIC HELICAL PEPTIDE WITH ALTERNATING D,L CHARACTERISTICS. THE N-TERM IS FORMYLATED (RESIDUE 1). THE C-TERM IS CAPPED WITH ETHANOLAMINE (RESIDUE 16). RESPECTIVELY. GROUP: 2 NAME: GRAMICIDIN A CHAIN: B, D COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 16 DESCRIPTION: GRAMICIDIN D IS A HEXADECAMERIC HELICAL PEPTIDE WITH ALTERNATING D,L CHARACTERISTICS. THE N-TERM IS FORMYLATED (RESIDUE 1). THE C-TERM IS CAPPED WITH ETHANOLAMINE (RESIDUE 16). THE DBREF FOR EACH CHAIN IS FOR THE MAJOR COMPONENT OF GRAMICIDIN A (TRP11), WHILE THE MINOR COMPONENTS (PHE11) IS REPRESENTED BY SEQADV WITH MICROHETEROGENEITY ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 D _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 11 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 N _pdbx_validate_close_contact.auth_asym_id_2 D _pdbx_validate_close_contact.auth_comp_id_2 DLE _pdbx_validate_close_contact.auth_seq_id_2 12 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.64 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C B TYR 11 ? B N B DLE 12 ? ? 1.066 1.336 -0.270 0.023 Y 2 1 C D TYR 11 ? B N D DLE 12 ? ? 0.964 1.336 -0.372 0.023 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A DLE 10 ? ? CB A DLE 10 ? ? CG A DLE 10 ? A 139.15 115.30 23.85 2.30 N 2 1 CA A DLE 10 ? ? CB A DLE 10 ? ? CG A DLE 10 ? B 130.24 115.30 14.94 2.30 N 3 1 CH2 A TRP 15 ? ? CZ2 A TRP 15 ? ? CE2 A TRP 15 ? ? 110.91 117.40 -6.49 1.00 N 4 1 O B TYR 11 ? B C B TYR 11 ? B N B DLE 12 ? ? 111.58 122.70 -11.12 1.60 Y 5 1 CA B DLE 14 ? ? CB B DLE 14 ? A CG B DLE 14 ? A 131.00 115.30 15.70 2.30 N 6 1 CA D DLE 10 ? ? C D DLE 10 ? ? N D TYR 11 ? B 131.59 117.20 14.39 2.20 Y 7 1 O D DLE 10 ? ? C D DLE 10 ? ? N D TYR 11 ? B 105.58 122.70 -17.12 1.60 Y 8 1 C D DLE 10 ? ? N D TYR 11 ? B CA D TYR 11 ? B 152.85 121.70 31.15 2.50 Y 9 1 CG D TRP 11 ? A CD2 D TRP 11 ? A CE3 D TRP 11 ? A 126.76 133.90 -7.14 0.90 N 10 1 CA D TYR 11 ? B C D TYR 11 ? B N D DLE 12 ? ? 137.34 117.20 20.14 2.20 Y 11 1 O D TYR 11 ? B C D TYR 11 ? B N D DLE 12 ? ? 96.51 122.70 -26.19 1.60 Y # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C B TYR 11 ? B N B DLE 12 ? ? 1.07 2 1 C D TYR 11 ? B N D DLE 12 ? ? 0.96 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id B _pdbx_unobs_or_zero_occ_atoms.auth_comp_id ETA _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 16 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id ETA _pdbx_unobs_or_zero_occ_atoms.label_seq_id 16 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 CL CL CL N N 14 DLE N N N N 15 DLE CA C N R 16 DLE CB C N N 17 DLE CG C N N 18 DLE CD1 C N N 19 DLE CD2 C N N 20 DLE C C N N 21 DLE O O N N 22 DLE OXT O N N 23 DLE H H N N 24 DLE H2 H N N 25 DLE HA H N N 26 DLE HB2 H N N 27 DLE HB3 H N N 28 DLE HG H N N 29 DLE HD11 H N N 30 DLE HD12 H N N 31 DLE HD13 H N N 32 DLE HD21 H N N 33 DLE HD22 H N N 34 DLE HD23 H N N 35 DLE HXT H N N 36 DVA N N N N 37 DVA CA C N R 38 DVA CB C N N 39 DVA CG1 C N N 40 DVA CG2 C N N 41 DVA C C N N 42 DVA O O N N 43 DVA OXT O N N 44 DVA H H N N 45 DVA H2 H N N 46 DVA HA H N N 47 DVA HB H N N 48 DVA HG11 H N N 49 DVA HG12 H N N 50 DVA HG13 H N N 51 DVA HG21 H N N 52 DVA HG22 H N N 53 DVA HG23 H N N 54 DVA HXT H N N 55 EOH C1 C N N 56 EOH C2 C N N 57 EOH O O N N 58 EOH H11 H N N 59 EOH H12 H N N 60 EOH H21 H N N 61 EOH H22 H N N 62 EOH H23 H N N 63 EOH HO H N N 64 ETA CA C N N 65 ETA N N N N 66 ETA C C N N 67 ETA O O N N 68 ETA HA1 H N N 69 ETA HA2 H N N 70 ETA H H N N 71 ETA H2 H N N 72 ETA HB1 H N N 73 ETA HB2 H N N 74 ETA HO H N N 75 FVA C C N N 76 FVA N N N N 77 FVA O O N N 78 FVA CA C N S 79 FVA CB C N N 80 FVA CG1 C N N 81 FVA CG2 C N N 82 FVA H H N N 83 FVA HA H N N 84 FVA HB H N N 85 FVA HG11 H N N 86 FVA HG12 H N N 87 FVA HG13 H N N 88 FVA HG21 H N N 89 FVA HG22 H N N 90 FVA HG23 H N N 91 FVA O1 O N N 92 FVA CN C N N 93 FVA HN H N N 94 FVA OXT O N N 95 FVA HXT H N N 96 GLY N N N N 97 GLY CA C N N 98 GLY C C N N 99 GLY O O N N 100 GLY OXT O N N 101 GLY H H N N 102 GLY H2 H N N 103 GLY HA2 H N N 104 GLY HA3 H N N 105 GLY HXT H N N 106 HOH O O N N 107 HOH H1 H N N 108 HOH H2 H N N 109 RB RB RB N N 110 TRP N N N N 111 TRP CA C N S 112 TRP C C N N 113 TRP O O N N 114 TRP CB C N N 115 TRP CG C Y N 116 TRP CD1 C Y N 117 TRP CD2 C Y N 118 TRP NE1 N Y N 119 TRP CE2 C Y N 120 TRP CE3 C Y N 121 TRP CZ2 C Y N 122 TRP CZ3 C Y N 123 TRP CH2 C Y N 124 TRP OXT O N N 125 TRP H H N N 126 TRP H2 H N N 127 TRP HA H N N 128 TRP HB2 H N N 129 TRP HB3 H N N 130 TRP HD1 H N N 131 TRP HE1 H N N 132 TRP HE3 H N N 133 TRP HZ2 H N N 134 TRP HZ3 H N N 135 TRP HH2 H N N 136 TRP HXT H N N 137 TYR N N N N 138 TYR CA C N S 139 TYR C C N N 140 TYR O O N N 141 TYR CB C N N 142 TYR CG C Y N 143 TYR CD1 C Y N 144 TYR CD2 C Y N 145 TYR CE1 C Y N 146 TYR CE2 C Y N 147 TYR CZ C Y N 148 TYR OH O N N 149 TYR OXT O N N 150 TYR H H N N 151 TYR H2 H N N 152 TYR HA H N N 153 TYR HB2 H N N 154 TYR HB3 H N N 155 TYR HD1 H N N 156 TYR HD2 H N N 157 TYR HE1 H N N 158 TYR HE2 H N N 159 TYR HH H N N 160 TYR HXT H N N 161 VAL N N N N 162 VAL CA C N S 163 VAL C C N N 164 VAL O O N N 165 VAL CB C N N 166 VAL CG1 C N N 167 VAL CG2 C N N 168 VAL OXT O N N 169 VAL H H N N 170 VAL H2 H N N 171 VAL HA H N N 172 VAL HB H N N 173 VAL HG11 H N N 174 VAL HG12 H N N 175 VAL HG13 H N N 176 VAL HG21 H N N 177 VAL HG22 H N N 178 VAL HG23 H N N 179 VAL HXT H N N 180 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 DLE N CA sing N N 13 DLE N H sing N N 14 DLE N H2 sing N N 15 DLE CA CB sing N N 16 DLE CA C sing N N 17 DLE CA HA sing N N 18 DLE CB CG sing N N 19 DLE CB HB2 sing N N 20 DLE CB HB3 sing N N 21 DLE CG CD1 sing N N 22 DLE CG CD2 sing N N 23 DLE CG HG sing N N 24 DLE CD1 HD11 sing N N 25 DLE CD1 HD12 sing N N 26 DLE CD1 HD13 sing N N 27 DLE CD2 HD21 sing N N 28 DLE CD2 HD22 sing N N 29 DLE CD2 HD23 sing N N 30 DLE C O doub N N 31 DLE C OXT sing N N 32 DLE OXT HXT sing N N 33 DVA N CA sing N N 34 DVA N H sing N N 35 DVA N H2 sing N N 36 DVA CA CB sing N N 37 DVA CA C sing N N 38 DVA CA HA sing N N 39 DVA CB CG1 sing N N 40 DVA CB CG2 sing N N 41 DVA CB HB sing N N 42 DVA CG1 HG11 sing N N 43 DVA CG1 HG12 sing N N 44 DVA CG1 HG13 sing N N 45 DVA CG2 HG21 sing N N 46 DVA CG2 HG22 sing N N 47 DVA CG2 HG23 sing N N 48 DVA C O doub N N 49 DVA C OXT sing N N 50 DVA OXT HXT sing N N 51 EOH C1 C2 sing N N 52 EOH C1 O sing N N 53 EOH C1 H11 sing N N 54 EOH C1 H12 sing N N 55 EOH C2 H21 sing N N 56 EOH C2 H22 sing N N 57 EOH C2 H23 sing N N 58 EOH O HO sing N N 59 ETA CA N sing N N 60 ETA CA C sing N N 61 ETA CA HA1 sing N N 62 ETA CA HA2 sing N N 63 ETA N H sing N N 64 ETA N H2 sing N N 65 ETA C O sing N N 66 ETA C HB1 sing N N 67 ETA C HB2 sing N N 68 ETA O HO sing N N 69 FVA O C doub N N 70 FVA C CA sing N N 71 FVA H N sing N N 72 FVA N CN sing N N 73 FVA N CA sing N N 74 FVA CB CA sing N N 75 FVA CA HA sing N N 76 FVA HB CB sing N N 77 FVA CB CG2 sing N N 78 FVA CB CG1 sing N N 79 FVA HG13 CG1 sing N N 80 FVA HG12 CG1 sing N N 81 FVA CG1 HG11 sing N N 82 FVA HG22 CG2 sing N N 83 FVA HG23 CG2 sing N N 84 FVA CG2 HG21 sing N N 85 FVA CN O1 doub N N 86 FVA HN CN sing N N 87 FVA C OXT sing N N 88 FVA OXT HXT sing N N 89 GLY N CA sing N N 90 GLY N H sing N N 91 GLY N H2 sing N N 92 GLY CA C sing N N 93 GLY CA HA2 sing N N 94 GLY CA HA3 sing N N 95 GLY C O doub N N 96 GLY C OXT sing N N 97 GLY OXT HXT sing N N 98 HOH O H1 sing N N 99 HOH O H2 sing N N 100 TRP N CA sing N N 101 TRP N H sing N N 102 TRP N H2 sing N N 103 TRP CA C sing N N 104 TRP CA CB sing N N 105 TRP CA HA sing N N 106 TRP C O doub N N 107 TRP C OXT sing N N 108 TRP CB CG sing N N 109 TRP CB HB2 sing N N 110 TRP CB HB3 sing N N 111 TRP CG CD1 doub Y N 112 TRP CG CD2 sing Y N 113 TRP CD1 NE1 sing Y N 114 TRP CD1 HD1 sing N N 115 TRP CD2 CE2 doub Y N 116 TRP CD2 CE3 sing Y N 117 TRP NE1 CE2 sing Y N 118 TRP NE1 HE1 sing N N 119 TRP CE2 CZ2 sing Y N 120 TRP CE3 CZ3 doub Y N 121 TRP CE3 HE3 sing N N 122 TRP CZ2 CH2 doub Y N 123 TRP CZ2 HZ2 sing N N 124 TRP CZ3 CH2 sing Y N 125 TRP CZ3 HZ3 sing N N 126 TRP CH2 HH2 sing N N 127 TRP OXT HXT sing N N 128 TYR N CA sing N N 129 TYR N H sing N N 130 TYR N H2 sing N N 131 TYR CA C sing N N 132 TYR CA CB sing N N 133 TYR CA HA sing N N 134 TYR C O doub N N 135 TYR C OXT sing N N 136 TYR CB CG sing N N 137 TYR CB HB2 sing N N 138 TYR CB HB3 sing N N 139 TYR CG CD1 doub Y N 140 TYR CG CD2 sing Y N 141 TYR CD1 CE1 sing Y N 142 TYR CD1 HD1 sing N N 143 TYR CD2 CE2 doub Y N 144 TYR CD2 HD2 sing N N 145 TYR CE1 CZ doub Y N 146 TYR CE1 HE1 sing N N 147 TYR CE2 CZ sing Y N 148 TYR CE2 HE2 sing N N 149 TYR CZ OH sing N N 150 TYR OH HH sing N N 151 TYR OXT HXT sing N N 152 VAL N CA sing N N 153 VAL N H sing N N 154 VAL N H2 sing N N 155 VAL CA C sing N N 156 VAL CA CB sing N N 157 VAL CA HA sing N N 158 VAL C O doub N N 159 VAL C OXT sing N N 160 VAL CB CG1 sing N N 161 VAL CB CG2 sing N N 162 VAL CB HB sing N N 163 VAL CG1 HG11 sing N N 164 VAL CG1 HG12 sing N N 165 VAL CG1 HG13 sing N N 166 VAL CG2 HG21 sing N N 167 VAL CG2 HG22 sing N N 168 VAL CG2 HG23 sing N N 169 VAL OXT HXT sing N N 170 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'RUBIDIUM ION' RB 3 'CHLORIDE ION' CL 4 ETHANOL EOH 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AV2 _pdbx_initial_refinement_model.details 'PDB ENTRY 1AV2' #