data_1WD6 # _entry.id 1WD6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1WD6 RCSB RCSB023450 WWPDB D_1000023450 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id eco001001948.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WD6 _pdbx_database_status.recvd_initial_deposition_date 2004-05-12 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kato-Murayama, M.' 1 'Shirouzu, M.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'crystal structure of JW1657 from Escherichia coli' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kato-Murayama, M.' 1 primary 'Shirouzu, M.' 2 primary 'Yokoyama, S.' 3 # _cell.entry_id 1WD6 _cell.length_a 85.803 _cell.length_b 85.803 _cell.length_c 95.923 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WD6 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein ydhR' 13915.303 2 ? ? ? ? 2 water nat water 18.015 18 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hypothetical protein JW1657' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)RGSHHHHHHTDPALRA(MSE)ATLLQLHFAFNGPFGDA(MSE)AEQLKPLAESINQEPGFLWKVWTESEKNHEAG GIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLAGLCGR ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSHHHHHHTDPALRAMATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSAL AYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLAGLCGR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier eco001001948.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 THR n 1 12 ASP n 1 13 PRO n 1 14 ALA n 1 15 LEU n 1 16 ARG n 1 17 ALA n 1 18 MSE n 1 19 ALA n 1 20 THR n 1 21 LEU n 1 22 LEU n 1 23 GLN n 1 24 LEU n 1 25 HIS n 1 26 PHE n 1 27 ALA n 1 28 PHE n 1 29 ASN n 1 30 GLY n 1 31 PRO n 1 32 PHE n 1 33 GLY n 1 34 ASP n 1 35 ALA n 1 36 MSE n 1 37 ALA n 1 38 GLU n 1 39 GLN n 1 40 LEU n 1 41 LYS n 1 42 PRO n 1 43 LEU n 1 44 ALA n 1 45 GLU n 1 46 SER n 1 47 ILE n 1 48 ASN n 1 49 GLN n 1 50 GLU n 1 51 PRO n 1 52 GLY n 1 53 PHE n 1 54 LEU n 1 55 TRP n 1 56 LYS n 1 57 VAL n 1 58 TRP n 1 59 THR n 1 60 GLU n 1 61 SER n 1 62 GLU n 1 63 LYS n 1 64 ASN n 1 65 HIS n 1 66 GLU n 1 67 ALA n 1 68 GLY n 1 69 GLY n 1 70 ILE n 1 71 TYR n 1 72 LEU n 1 73 PHE n 1 74 THR n 1 75 ASP n 1 76 GLU n 1 77 LYS n 1 78 SER n 1 79 ALA n 1 80 LEU n 1 81 ALA n 1 82 TYR n 1 83 LEU n 1 84 GLU n 1 85 LYS n 1 86 HIS n 1 87 THR n 1 88 ALA n 1 89 ARG n 1 90 LEU n 1 91 LYS n 1 92 ASN n 1 93 LEU n 1 94 GLY n 1 95 VAL n 1 96 GLU n 1 97 GLU n 1 98 VAL n 1 99 VAL n 1 100 ALA n 1 101 LYS n 1 102 VAL n 1 103 PHE n 1 104 ASP n 1 105 VAL n 1 106 ASN n 1 107 GLU n 1 108 PRO n 1 109 LEU n 1 110 SER n 1 111 GLN n 1 112 ILE n 1 113 ASN n 1 114 GLN n 1 115 ALA n 1 116 LYS n 1 117 LEU n 1 118 ALA n 1 119 GLY n 1 120 LEU n 1 121 CYS n 1 122 GLY n 1 123 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCA24N _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YDHR_ECOLI _struct_ref.pdbx_db_accession P0ACX3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEE VVAKVFDVNEPLSQINQAKLA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1WD6 A 18 ? 118 ? P0ACX3 1 ? 101 ? 1 101 2 1 1WD6 B 18 ? 118 ? P0ACX3 1 ? 101 ? 1 101 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WD6 MSE A 1 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -16 1 1 1WD6 ARG A 2 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -15 2 1 1WD6 GLY A 3 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -14 3 1 1WD6 SER A 4 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -13 4 1 1WD6 HIS A 5 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -12 5 1 1WD6 HIS A 6 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -11 6 1 1WD6 HIS A 7 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -10 7 1 1WD6 HIS A 8 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -9 8 1 1WD6 HIS A 9 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -8 9 1 1WD6 HIS A 10 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -7 10 1 1WD6 THR A 11 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -6 11 1 1WD6 ASP A 12 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -5 12 1 1WD6 PRO A 13 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -4 13 1 1WD6 ALA A 14 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -3 14 1 1WD6 LEU A 15 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -2 15 1 1WD6 ARG A 16 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -1 16 1 1WD6 ALA A 17 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' 0 17 1 1WD6 MSE A 18 ? UNP P0ACX3 MET 1 'MODIFIED RESIDUE' 1 18 1 1WD6 MSE A 36 ? UNP P0ACX3 MET 19 'MODIFIED RESIDUE' 19 19 1 1WD6 GLY A 119 ? UNP P0ACX3 ? ? 'CLONING ARTIFACT' 102 20 1 1WD6 LEU A 120 ? UNP P0ACX3 ? ? 'CLONING ARTIFACT' 103 21 1 1WD6 CYS A 121 ? UNP P0ACX3 ? ? 'CLONING ARTIFACT' 104 22 1 1WD6 GLY A 122 ? UNP P0ACX3 ? ? 'CLONING ARTIFACT' 105 23 1 1WD6 ARG A 123 ? UNP P0ACX3 ? ? 'CLONING ARTIFACT' 106 24 2 1WD6 MSE B 1 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -16 25 2 1WD6 ARG B 2 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -15 26 2 1WD6 GLY B 3 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -14 27 2 1WD6 SER B 4 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -13 28 2 1WD6 HIS B 5 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -12 29 2 1WD6 HIS B 6 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -11 30 2 1WD6 HIS B 7 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -10 31 2 1WD6 HIS B 8 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -9 32 2 1WD6 HIS B 9 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -8 33 2 1WD6 HIS B 10 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -7 34 2 1WD6 THR B 11 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -6 35 2 1WD6 ASP B 12 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -5 36 2 1WD6 PRO B 13 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -4 37 2 1WD6 ALA B 14 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -3 38 2 1WD6 LEU B 15 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -2 39 2 1WD6 ARG B 16 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' -1 40 2 1WD6 ALA B 17 ? UNP P0ACX3 ? ? 'EXPRESSION TAG' 0 41 2 1WD6 MSE B 18 ? UNP P0ACX3 MET 1 'MODIFIED RESIDUE' 1 42 2 1WD6 MSE B 36 ? UNP P0ACX3 MET 19 'MODIFIED RESIDUE' 19 43 2 1WD6 GLY B 119 ? UNP P0ACX3 ? ? 'CLONING ARTIFACT' 102 44 2 1WD6 LEU B 120 ? UNP P0ACX3 ? ? 'CLONING ARTIFACT' 103 45 2 1WD6 CYS B 121 ? UNP P0ACX3 ? ? 'CLONING ARTIFACT' 104 46 2 1WD6 GLY B 122 ? UNP P0ACX3 ? ? 'CLONING ARTIFACT' 105 47 2 1WD6 ARG B 123 ? UNP P0ACX3 ? ? 'CLONING ARTIFACT' 106 48 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1WD6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.66 _exptl_crystal.density_percent_sol 66.42 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'Oil Batch' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'Ammonium Sulfate, PEG8000, pH 7.0, Oil Batch, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2003-11-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9640 1.0 2 0.97914 1.0 3 0.97964 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9640, 0.97914, 0.97964' # _reflns.entry_id 1WD6 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.90 _reflns.number_obs 9408 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 45.8 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.00 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1WD6 _refine.ls_number_reflns_obs 9380 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 782711.31 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.37 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.208 _refine.ls_R_factor_R_free 0.242 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.4 _refine.ls_number_reflns_R_free 975 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 25.0 _refine.aniso_B[1][1] -0.23 _refine.aniso_B[2][2] -0.23 _refine.aniso_B[3][3] 0.46 _refine.aniso_B[1][2] 8.19 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.341733 _refine.solvent_model_param_bsol 15.3447 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1WD6 _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.38 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.38 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1529 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 1547 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 29.37 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.90 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 3.08 _refine_ls_shell.number_reflns_R_work 1368 _refine_ls_shell.R_factor_R_work 0.269 _refine_ls_shell.percent_reflns_obs 99.1 _refine_ls_shell.R_factor_R_free 0.279 _refine_ls_shell.R_factor_R_free_error 0.023 _refine_ls_shell.percent_reflns_R_free 9.9 _refine_ls_shell.number_reflns_R_free 151 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1WD6 _struct.title 'crystal structure of JW1657 from Escherichia coli' _struct.pdbx_descriptor 'Protein ydhR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WD6 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'hypothetical protein, STRUCTURAL GENOMICS, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 32 ? LEU A 40 ? PHE A 15 LEU A 23 1 ? 9 HELX_P HELX_P2 2 LEU A 40 ? ASN A 48 ? LEU A 23 ASN A 31 1 ? 9 HELX_P HELX_P3 3 ASP A 75 ? LEU A 90 ? ASP A 58 LEU A 73 1 ? 16 HELX_P HELX_P4 4 ASN A 106 ? ASN A 113 ? ASN A 89 ASN A 96 1 ? 8 HELX_P HELX_P5 5 PHE B 32 ? LEU B 40 ? PHE B 15 LEU B 23 1 ? 9 HELX_P HELX_P6 6 LEU B 40 ? ASN B 48 ? LEU B 23 ASN B 31 1 ? 9 HELX_P HELX_P7 7 ASP B 75 ? LYS B 91 ? ASP B 58 LYS B 74 1 ? 17 HELX_P HELX_P8 8 ASN B 92 ? GLY B 94 ? ASN B 75 GLY B 77 5 ? 3 HELX_P HELX_P9 9 ASN B 106 ? ASN B 113 ? ASN B 89 ASN B 96 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 35 C ? ? ? 1_555 A MSE 36 N ? ? A ALA 18 A MSE 19 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A MSE 36 C ? ? ? 1_555 A ALA 37 N ? ? A MSE 19 A ALA 20 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? B ALA 35 C ? ? ? 1_555 B MSE 36 N ? ? B ALA 18 B MSE 19 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? B MSE 36 C ? ? ? 1_555 B ALA 37 N ? ? B MSE 19 B ALA 20 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 20 ? ALA A 27 ? THR A 3 ALA A 10 A 2 GLU A 66 ? PHE A 73 ? GLU A 49 PHE A 56 A 3 PHE A 53 ? SER A 61 ? PHE A 36 SER A 44 A 4 VAL B 99 ? VAL B 105 ? VAL B 82 VAL B 88 A 5 THR B 20 ? ALA B 27 ? THR B 3 ALA B 10 A 6 GLU B 66 ? PHE B 73 ? GLU B 49 PHE B 56 A 7 PHE B 53 ? SER B 61 ? PHE B 36 SER B 44 A 8 VAL A 99 ? VAL A 105 ? VAL A 82 VAL A 88 A 9 THR A 20 ? ALA A 27 ? THR A 3 ALA A 10 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 24 ? N LEU A 7 O GLY A 69 ? O GLY A 52 A 2 3 O GLU A 66 ? O GLU A 49 N SER A 61 ? N SER A 44 A 3 4 N GLU A 60 ? N GLU A 43 O ASP B 104 ? O ASP B 87 A 4 5 O LYS B 101 ? O LYS B 84 N GLN B 23 ? N GLN B 6 A 5 6 N LEU B 22 ? N LEU B 5 O TYR B 71 ? O TYR B 54 A 6 7 O GLY B 68 ? O GLY B 51 N THR B 59 ? N THR B 42 A 7 8 O GLU B 60 ? O GLU B 43 N ASP A 104 ? N ASP A 87 A 8 9 O PHE A 103 ? O PHE A 86 N LEU A 21 ? N LEU A 4 # _database_PDB_matrix.entry_id 1WD6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WD6 _atom_sites.fract_transf_matrix[1][1] 0.011655 _atom_sites.fract_transf_matrix[1][2] 0.006729 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013458 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010425 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -16 ? ? ? A . n A 1 2 ARG 2 -15 ? ? ? A . n A 1 3 GLY 3 -14 ? ? ? A . n A 1 4 SER 4 -13 ? ? ? A . n A 1 5 HIS 5 -12 ? ? ? A . n A 1 6 HIS 6 -11 ? ? ? A . n A 1 7 HIS 7 -10 ? ? ? A . n A 1 8 HIS 8 -9 ? ? ? A . n A 1 9 HIS 9 -8 ? ? ? A . n A 1 10 HIS 10 -7 ? ? ? A . n A 1 11 THR 11 -6 ? ? ? A . n A 1 12 ASP 12 -5 ? ? ? A . n A 1 13 PRO 13 -4 ? ? ? A . n A 1 14 ALA 14 -3 ? ? ? A . n A 1 15 LEU 15 -2 ? ? ? A . n A 1 16 ARG 16 -1 ? ? ? A . n A 1 17 ALA 17 0 ? ? ? A . n A 1 18 MSE 18 1 ? ? ? A . n A 1 19 ALA 19 2 2 ALA ALA A . n A 1 20 THR 20 3 3 THR THR A . n A 1 21 LEU 21 4 4 LEU LEU A . n A 1 22 LEU 22 5 5 LEU LEU A . n A 1 23 GLN 23 6 6 GLN GLN A . n A 1 24 LEU 24 7 7 LEU LEU A . n A 1 25 HIS 25 8 8 HIS HIS A . n A 1 26 PHE 26 9 9 PHE PHE A . n A 1 27 ALA 27 10 10 ALA ALA A . n A 1 28 PHE 28 11 11 PHE PHE A . n A 1 29 ASN 29 12 12 ASN ASN A . n A 1 30 GLY 30 13 13 GLY GLY A . n A 1 31 PRO 31 14 14 PRO PRO A . n A 1 32 PHE 32 15 15 PHE PHE A . n A 1 33 GLY 33 16 16 GLY GLY A . n A 1 34 ASP 34 17 17 ASP ASP A . n A 1 35 ALA 35 18 18 ALA ALA A . n A 1 36 MSE 36 19 19 MSE MSE A . n A 1 37 ALA 37 20 20 ALA ALA A . n A 1 38 GLU 38 21 21 GLU GLU A . n A 1 39 GLN 39 22 22 GLN GLN A . n A 1 40 LEU 40 23 23 LEU LEU A . n A 1 41 LYS 41 24 24 LYS LYS A . n A 1 42 PRO 42 25 25 PRO PRO A . n A 1 43 LEU 43 26 26 LEU LEU A . n A 1 44 ALA 44 27 27 ALA ALA A . n A 1 45 GLU 45 28 28 GLU GLU A . n A 1 46 SER 46 29 29 SER SER A . n A 1 47 ILE 47 30 30 ILE ILE A . n A 1 48 ASN 48 31 31 ASN ASN A . n A 1 49 GLN 49 32 32 GLN GLN A . n A 1 50 GLU 50 33 33 GLU GLU A . n A 1 51 PRO 51 34 34 PRO PRO A . n A 1 52 GLY 52 35 35 GLY GLY A . n A 1 53 PHE 53 36 36 PHE PHE A . n A 1 54 LEU 54 37 37 LEU LEU A . n A 1 55 TRP 55 38 38 TRP TRP A . n A 1 56 LYS 56 39 39 LYS LYS A . n A 1 57 VAL 57 40 40 VAL VAL A . n A 1 58 TRP 58 41 41 TRP TRP A . n A 1 59 THR 59 42 42 THR THR A . n A 1 60 GLU 60 43 43 GLU GLU A . n A 1 61 SER 61 44 44 SER SER A . n A 1 62 GLU 62 45 45 GLU GLU A . n A 1 63 LYS 63 46 46 LYS LYS A . n A 1 64 ASN 64 47 47 ASN ASN A . n A 1 65 HIS 65 48 48 HIS HIS A . n A 1 66 GLU 66 49 49 GLU GLU A . n A 1 67 ALA 67 50 50 ALA ALA A . n A 1 68 GLY 68 51 51 GLY GLY A . n A 1 69 GLY 69 52 52 GLY GLY A . n A 1 70 ILE 70 53 53 ILE ILE A . n A 1 71 TYR 71 54 54 TYR TYR A . n A 1 72 LEU 72 55 55 LEU LEU A . n A 1 73 PHE 73 56 56 PHE PHE A . n A 1 74 THR 74 57 57 THR THR A . n A 1 75 ASP 75 58 58 ASP ASP A . n A 1 76 GLU 76 59 59 GLU GLU A . n A 1 77 LYS 77 60 60 LYS LYS A . n A 1 78 SER 78 61 61 SER SER A . n A 1 79 ALA 79 62 62 ALA ALA A . n A 1 80 LEU 80 63 63 LEU LEU A . n A 1 81 ALA 81 64 64 ALA ALA A . n A 1 82 TYR 82 65 65 TYR TYR A . n A 1 83 LEU 83 66 66 LEU LEU A . n A 1 84 GLU 84 67 67 GLU GLU A . n A 1 85 LYS 85 68 68 LYS LYS A . n A 1 86 HIS 86 69 69 HIS HIS A . n A 1 87 THR 87 70 70 THR THR A . n A 1 88 ALA 88 71 71 ALA ALA A . n A 1 89 ARG 89 72 72 ARG ARG A . n A 1 90 LEU 90 73 73 LEU LEU A . n A 1 91 LYS 91 74 74 LYS LYS A . n A 1 92 ASN 92 75 75 ASN ASN A . n A 1 93 LEU 93 76 76 LEU LEU A . n A 1 94 GLY 94 77 77 GLY GLY A . n A 1 95 VAL 95 78 78 VAL VAL A . n A 1 96 GLU 96 79 79 GLU GLU A . n A 1 97 GLU 97 80 80 GLU GLU A . n A 1 98 VAL 98 81 81 VAL VAL A . n A 1 99 VAL 99 82 82 VAL VAL A . n A 1 100 ALA 100 83 83 ALA ALA A . n A 1 101 LYS 101 84 84 LYS LYS A . n A 1 102 VAL 102 85 85 VAL VAL A . n A 1 103 PHE 103 86 86 PHE PHE A . n A 1 104 ASP 104 87 87 ASP ASP A . n A 1 105 VAL 105 88 88 VAL VAL A . n A 1 106 ASN 106 89 89 ASN ASN A . n A 1 107 GLU 107 90 90 GLU GLU A . n A 1 108 PRO 108 91 91 PRO PRO A . n A 1 109 LEU 109 92 92 LEU LEU A . n A 1 110 SER 110 93 93 SER SER A . n A 1 111 GLN 111 94 94 GLN GLN A . n A 1 112 ILE 112 95 95 ILE ILE A . n A 1 113 ASN 113 96 96 ASN ASN A . n A 1 114 GLN 114 97 97 GLN GLN A . n A 1 115 ALA 115 98 98 ALA ALA A . n A 1 116 LYS 116 99 ? ? ? A . n A 1 117 LEU 117 100 ? ? ? A . n A 1 118 ALA 118 101 ? ? ? A . n A 1 119 GLY 119 102 ? ? ? A . n A 1 120 LEU 120 103 ? ? ? A . n A 1 121 CYS 121 104 ? ? ? A . n A 1 122 GLY 122 105 ? ? ? A . n A 1 123 ARG 123 106 ? ? ? A . n B 1 1 MSE 1 -16 ? ? ? B . n B 1 2 ARG 2 -15 ? ? ? B . n B 1 3 GLY 3 -14 ? ? ? B . n B 1 4 SER 4 -13 ? ? ? B . n B 1 5 HIS 5 -12 ? ? ? B . n B 1 6 HIS 6 -11 ? ? ? B . n B 1 7 HIS 7 -10 ? ? ? B . n B 1 8 HIS 8 -9 ? ? ? B . n B 1 9 HIS 9 -8 ? ? ? B . n B 1 10 HIS 10 -7 ? ? ? B . n B 1 11 THR 11 -6 ? ? ? B . n B 1 12 ASP 12 -5 ? ? ? B . n B 1 13 PRO 13 -4 ? ? ? B . n B 1 14 ALA 14 -3 ? ? ? B . n B 1 15 LEU 15 -2 ? ? ? B . n B 1 16 ARG 16 -1 ? ? ? B . n B 1 17 ALA 17 0 ? ? ? B . n B 1 18 MSE 18 1 ? ? ? B . n B 1 19 ALA 19 2 2 ALA ALA B . n B 1 20 THR 20 3 3 THR THR B . n B 1 21 LEU 21 4 4 LEU LEU B . n B 1 22 LEU 22 5 5 LEU LEU B . n B 1 23 GLN 23 6 6 GLN GLN B . n B 1 24 LEU 24 7 7 LEU LEU B . n B 1 25 HIS 25 8 8 HIS HIS B . n B 1 26 PHE 26 9 9 PHE PHE B . n B 1 27 ALA 27 10 10 ALA ALA B . n B 1 28 PHE 28 11 11 PHE PHE B . n B 1 29 ASN 29 12 12 ASN ASN B . n B 1 30 GLY 30 13 13 GLY GLY B . n B 1 31 PRO 31 14 14 PRO PRO B . n B 1 32 PHE 32 15 15 PHE PHE B . n B 1 33 GLY 33 16 16 GLY GLY B . n B 1 34 ASP 34 17 17 ASP ASP B . n B 1 35 ALA 35 18 18 ALA ALA B . n B 1 36 MSE 36 19 19 MSE MSE B . n B 1 37 ALA 37 20 20 ALA ALA B . n B 1 38 GLU 38 21 21 GLU GLU B . n B 1 39 GLN 39 22 22 GLN GLN B . n B 1 40 LEU 40 23 23 LEU LEU B . n B 1 41 LYS 41 24 24 LYS LYS B . n B 1 42 PRO 42 25 25 PRO PRO B . n B 1 43 LEU 43 26 26 LEU LEU B . n B 1 44 ALA 44 27 27 ALA ALA B . n B 1 45 GLU 45 28 28 GLU GLU B . n B 1 46 SER 46 29 29 SER SER B . n B 1 47 ILE 47 30 30 ILE ILE B . n B 1 48 ASN 48 31 31 ASN ASN B . n B 1 49 GLN 49 32 32 GLN GLN B . n B 1 50 GLU 50 33 33 GLU GLU B . n B 1 51 PRO 51 34 34 PRO PRO B . n B 1 52 GLY 52 35 35 GLY GLY B . n B 1 53 PHE 53 36 36 PHE PHE B . n B 1 54 LEU 54 37 37 LEU LEU B . n B 1 55 TRP 55 38 38 TRP TRP B . n B 1 56 LYS 56 39 39 LYS LYS B . n B 1 57 VAL 57 40 40 VAL VAL B . n B 1 58 TRP 58 41 41 TRP TRP B . n B 1 59 THR 59 42 42 THR THR B . n B 1 60 GLU 60 43 43 GLU GLU B . n B 1 61 SER 61 44 44 SER SER B . n B 1 62 GLU 62 45 45 GLU GLU B . n B 1 63 LYS 63 46 46 LYS LYS B . n B 1 64 ASN 64 47 47 ASN ASN B . n B 1 65 HIS 65 48 48 HIS HIS B . n B 1 66 GLU 66 49 49 GLU GLU B . n B 1 67 ALA 67 50 50 ALA ALA B . n B 1 68 GLY 68 51 51 GLY GLY B . n B 1 69 GLY 69 52 52 GLY GLY B . n B 1 70 ILE 70 53 53 ILE ILE B . n B 1 71 TYR 71 54 54 TYR TYR B . n B 1 72 LEU 72 55 55 LEU LEU B . n B 1 73 PHE 73 56 56 PHE PHE B . n B 1 74 THR 74 57 57 THR THR B . n B 1 75 ASP 75 58 58 ASP ASP B . n B 1 76 GLU 76 59 59 GLU GLU B . n B 1 77 LYS 77 60 60 LYS LYS B . n B 1 78 SER 78 61 61 SER SER B . n B 1 79 ALA 79 62 62 ALA ALA B . n B 1 80 LEU 80 63 63 LEU LEU B . n B 1 81 ALA 81 64 64 ALA ALA B . n B 1 82 TYR 82 65 65 TYR TYR B . n B 1 83 LEU 83 66 66 LEU LEU B . n B 1 84 GLU 84 67 67 GLU GLU B . n B 1 85 LYS 85 68 68 LYS LYS B . n B 1 86 HIS 86 69 69 HIS HIS B . n B 1 87 THR 87 70 70 THR THR B . n B 1 88 ALA 88 71 71 ALA ALA B . n B 1 89 ARG 89 72 72 ARG ARG B . n B 1 90 LEU 90 73 73 LEU LEU B . n B 1 91 LYS 91 74 74 LYS LYS B . n B 1 92 ASN 92 75 75 ASN ASN B . n B 1 93 LEU 93 76 76 LEU LEU B . n B 1 94 GLY 94 77 77 GLY GLY B . n B 1 95 VAL 95 78 78 VAL VAL B . n B 1 96 GLU 96 79 79 GLU GLU B . n B 1 97 GLU 97 80 80 GLU GLU B . n B 1 98 VAL 98 81 81 VAL VAL B . n B 1 99 VAL 99 82 82 VAL VAL B . n B 1 100 ALA 100 83 83 ALA ALA B . n B 1 101 LYS 101 84 84 LYS LYS B . n B 1 102 VAL 102 85 85 VAL VAL B . n B 1 103 PHE 103 86 86 PHE PHE B . n B 1 104 ASP 104 87 87 ASP ASP B . n B 1 105 VAL 105 88 88 VAL VAL B . n B 1 106 ASN 106 89 89 ASN ASN B . n B 1 107 GLU 107 90 90 GLU GLU B . n B 1 108 PRO 108 91 91 PRO PRO B . n B 1 109 LEU 109 92 92 LEU LEU B . n B 1 110 SER 110 93 93 SER SER B . n B 1 111 GLN 111 94 94 GLN GLN B . n B 1 112 ILE 112 95 95 ILE ILE B . n B 1 113 ASN 113 96 96 ASN ASN B . n B 1 114 GLN 114 97 97 GLN GLN B . n B 1 115 ALA 115 98 ? ? ? B . n B 1 116 LYS 116 99 ? ? ? B . n B 1 117 LEU 117 100 ? ? ? B . n B 1 118 ALA 118 101 ? ? ? B . n B 1 119 GLY 119 102 ? ? ? B . n B 1 120 LEU 120 103 ? ? ? B . n B 1 121 CYS 121 104 ? ? ? B . n B 1 122 GLY 122 105 ? ? ? B . n B 1 123 ARG 123 106 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 107 2 HOH HOH A . C 2 HOH 2 108 3 HOH HOH A . C 2 HOH 3 109 4 HOH HOH A . C 2 HOH 4 110 5 HOH HOH A . C 2 HOH 5 111 7 HOH HOH A . C 2 HOH 6 112 8 HOH HOH A . C 2 HOH 7 113 9 HOH HOH A . C 2 HOH 8 114 11 HOH HOH A . C 2 HOH 9 115 12 HOH HOH A . C 2 HOH 10 116 13 HOH HOH A . C 2 HOH 11 117 14 HOH HOH A . C 2 HOH 12 118 16 HOH HOH A . D 2 HOH 1 107 1 HOH HOH B . D 2 HOH 2 108 6 HOH HOH B . D 2 HOH 3 109 10 HOH HOH B . D 2 HOH 4 110 15 HOH HOH B . D 2 HOH 5 111 17 HOH HOH B . D 2 HOH 6 112 18 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 36 A MSE 19 ? MET SELENOMETHIONINE 2 B MSE 36 B MSE 19 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3220 ? 1 MORE -16 ? 1 'SSA (A^2)' 9550 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-12 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -16 ? A MSE 1 2 1 Y 1 A ARG -15 ? A ARG 2 3 1 Y 1 A GLY -14 ? A GLY 3 4 1 Y 1 A SER -13 ? A SER 4 5 1 Y 1 A HIS -12 ? A HIS 5 6 1 Y 1 A HIS -11 ? A HIS 6 7 1 Y 1 A HIS -10 ? A HIS 7 8 1 Y 1 A HIS -9 ? A HIS 8 9 1 Y 1 A HIS -8 ? A HIS 9 10 1 Y 1 A HIS -7 ? A HIS 10 11 1 Y 1 A THR -6 ? A THR 11 12 1 Y 1 A ASP -5 ? A ASP 12 13 1 Y 1 A PRO -4 ? A PRO 13 14 1 Y 1 A ALA -3 ? A ALA 14 15 1 Y 1 A LEU -2 ? A LEU 15 16 1 Y 1 A ARG -1 ? A ARG 16 17 1 Y 1 A ALA 0 ? A ALA 17 18 1 Y 1 A MSE 1 ? A MSE 18 19 1 Y 1 A LYS 99 ? A LYS 116 20 1 Y 1 A LEU 100 ? A LEU 117 21 1 Y 1 A ALA 101 ? A ALA 118 22 1 Y 1 A GLY 102 ? A GLY 119 23 1 Y 1 A LEU 103 ? A LEU 120 24 1 Y 1 A CYS 104 ? A CYS 121 25 1 Y 1 A GLY 105 ? A GLY 122 26 1 Y 1 A ARG 106 ? A ARG 123 27 1 Y 1 B MSE -16 ? B MSE 1 28 1 Y 1 B ARG -15 ? B ARG 2 29 1 Y 1 B GLY -14 ? B GLY 3 30 1 Y 1 B SER -13 ? B SER 4 31 1 Y 1 B HIS -12 ? B HIS 5 32 1 Y 1 B HIS -11 ? B HIS 6 33 1 Y 1 B HIS -10 ? B HIS 7 34 1 Y 1 B HIS -9 ? B HIS 8 35 1 Y 1 B HIS -8 ? B HIS 9 36 1 Y 1 B HIS -7 ? B HIS 10 37 1 Y 1 B THR -6 ? B THR 11 38 1 Y 1 B ASP -5 ? B ASP 12 39 1 Y 1 B PRO -4 ? B PRO 13 40 1 Y 1 B ALA -3 ? B ALA 14 41 1 Y 1 B LEU -2 ? B LEU 15 42 1 Y 1 B ARG -1 ? B ARG 16 43 1 Y 1 B ALA 0 ? B ALA 17 44 1 Y 1 B MSE 1 ? B MSE 18 45 1 Y 1 B ALA 98 ? B ALA 115 46 1 Y 1 B LYS 99 ? B LYS 116 47 1 Y 1 B LEU 100 ? B LEU 117 48 1 Y 1 B ALA 101 ? B ALA 118 49 1 Y 1 B GLY 102 ? B GLY 119 50 1 Y 1 B LEU 103 ? B LEU 120 51 1 Y 1 B CYS 104 ? B CYS 121 52 1 Y 1 B GLY 105 ? B GLY 122 53 1 Y 1 B ARG 106 ? B ARG 123 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #