HEADER ENDOCYTOSIS/EXOCYTOSIS 26-MAY-04 1WFG TITLE PDZ DOMAIN OF HUMAN RIM2B COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: RAB3-INTERACTING MOLECULE 2, RIM 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA HK04424; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P021030-35; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, EXOCYTOSIS, RAB3-INTERACTING MOLECULE, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, KEYWDS 3 ENDOCYTOSIS-EXOCYTOSIS COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WFG 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WFG 1 VERSN REVDAT 1 24-NOV-04 1WFG 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL PDZ DOMAIN OF HUMAN RIM2B JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WFG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000023519. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.17MM 13C/15N-LABELED PROTEIN; REMARK 210 20MM PINA, 100MM NACL, 1MM DTT, REMARK 210 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.8992, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 17 H ARG A 30 1.49 REMARK 500 H ASN A 94 O GLU A 120 1.50 REMARK 500 O GLU A 104 H ASN A 108 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 -58.82 -163.46 REMARK 500 1 SER A 6 109.17 60.25 REMARK 500 1 SER A 11 -173.17 -69.74 REMARK 500 1 ASP A 12 76.73 48.07 REMARK 500 1 LYS A 13 67.48 -112.92 REMARK 500 1 HIS A 14 119.90 -176.75 REMARK 500 1 LYS A 35 -46.52 -135.61 REMARK 500 1 ARG A 36 110.29 -37.73 REMARK 500 1 LEU A 37 175.03 -49.07 REMARK 500 1 ASP A 45 108.06 161.75 REMARK 500 1 SER A 46 48.74 -106.86 REMARK 500 1 LEU A 50 -62.16 68.80 REMARK 500 1 LEU A 77 -70.24 -41.68 REMARK 500 1 ASP A 79 -48.36 176.38 REMARK 500 1 GLN A 99 106.80 -54.44 REMARK 500 1 ILE A 109 -74.89 -45.42 REMARK 500 1 ILE A 110 -30.23 -39.61 REMARK 500 1 GLU A 116 152.79 -44.91 REMARK 500 1 SER A 129 80.37 -174.46 REMARK 500 1 SER A 130 -60.00 -92.90 REMARK 500 2 SER A 2 86.77 40.95 REMARK 500 2 HIS A 8 164.92 -43.39 REMARK 500 2 SER A 11 73.70 -174.92 REMARK 500 2 LYS A 13 -107.68 -72.21 REMARK 500 2 ASP A 23 -87.26 -68.59 REMARK 500 2 LEU A 37 173.12 -48.00 REMARK 500 2 ASP A 45 105.31 -176.38 REMARK 500 2 LEU A 50 -64.71 68.16 REMARK 500 2 THR A 60 -165.32 -71.01 REMARK 500 2 ASP A 79 -48.40 177.48 REMARK 500 2 LEU A 84 171.66 -49.60 REMARK 500 2 GLN A 99 107.68 -53.64 REMARK 500 2 GLU A 116 146.57 -38.88 REMARK 500 3 SER A 2 85.70 -157.78 REMARK 500 3 SER A 3 165.21 60.94 REMARK 500 3 SER A 9 85.76 177.99 REMARK 500 3 SER A 11 75.39 179.16 REMARK 500 3 LYS A 13 67.62 -114.19 REMARK 500 3 LEU A 37 172.81 -51.27 REMARK 500 3 PRO A 43 -162.55 -74.99 REMARK 500 3 ARG A 44 -37.11 -39.04 REMARK 500 3 ASP A 45 -47.14 -174.11 REMARK 500 3 SER A 46 34.31 71.71 REMARK 500 3 LEU A 50 -61.26 69.06 REMARK 500 3 THR A 60 -161.13 -70.66 REMARK 500 3 ASP A 79 -47.04 178.66 REMARK 500 3 ASP A 88 -171.92 -68.15 REMARK 500 3 ILE A 109 -74.13 -46.82 REMARK 500 3 GLU A 116 150.30 -45.44 REMARK 500 4 SER A 2 153.26 62.60 REMARK 500 REMARK 500 THIS ENTRY HAS 284 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000733.1 RELATED DB: TARGETDB DBREF 1WFG A 8 125 UNP Q9UQ26 RIMS2_HUMAN 637 754 SEQADV 1WFG GLY A 1 UNP Q9UQ26 CLONING ARTIFACT SEQADV 1WFG SER A 2 UNP Q9UQ26 CLONING ARTIFACT SEQADV 1WFG SER A 3 UNP Q9UQ26 CLONING ARTIFACT SEQADV 1WFG GLY A 4 UNP Q9UQ26 CLONING ARTIFACT SEQADV 1WFG SER A 5 UNP Q9UQ26 CLONING ARTIFACT SEQADV 1WFG SER A 6 UNP Q9UQ26 CLONING ARTIFACT SEQADV 1WFG GLY A 7 UNP Q9UQ26 CLONING ARTIFACT SEQADV 1WFG SER A 126 UNP Q9UQ26 CLONING ARTIFACT SEQADV 1WFG GLY A 127 UNP Q9UQ26 CLONING ARTIFACT SEQADV 1WFG PRO A 128 UNP Q9UQ26 CLONING ARTIFACT SEQADV 1WFG SER A 129 UNP Q9UQ26 CLONING ARTIFACT SEQADV 1WFG SER A 130 UNP Q9UQ26 CLONING ARTIFACT SEQADV 1WFG GLY A 131 UNP Q9UQ26 CLONING ARTIFACT SEQRES 1 A 131 GLY SER SER GLY SER SER GLY HIS SER HIS SER ASP LYS SEQRES 2 A 131 HIS PRO VAL THR TRP GLN PRO SER LYS ASP GLY ASP ARG SEQRES 3 A 131 LEU ILE GLY ARG ILE LEU LEU ASN LYS ARG LEU LYS ASP SEQRES 4 A 131 GLY SER VAL PRO ARG ASP SER GLY ALA MET LEU GLY LEU SEQRES 5 A 131 LYS VAL VAL GLY GLY LYS MET THR GLU SER GLY ARG LEU SEQRES 6 A 131 CYS ALA PHE ILE THR LYS VAL LYS LYS GLY SER LEU ALA SEQRES 7 A 131 ASP THR VAL GLY HIS LEU ARG PRO GLY ASP GLU VAL LEU SEQRES 8 A 131 GLU TRP ASN GLY ARG LEU LEU GLN GLY ALA THR PHE GLU SEQRES 9 A 131 GLU VAL TYR ASN ILE ILE LEU GLU SER LYS PRO GLU PRO SEQRES 10 A 131 GLN VAL GLU LEU VAL VAL SER ARG SER GLY PRO SER SER SEQRES 11 A 131 GLY HELIX 1 1 THR A 102 SER A 113 1 12 SHEET 1 A 6 THR A 17 PRO A 20 0 SHEET 2 A 6 ARG A 26 ASN A 34 -1 O ARG A 30 N THR A 17 SHEET 3 A 6 GLN A 118 SER A 126 -1 O ARG A 125 N LEU A 27 SHEET 4 A 6 GLU A 89 TRP A 93 -1 N LEU A 91 O VAL A 122 SHEET 5 A 6 LEU A 65 VAL A 72 -1 N ALA A 67 O VAL A 90 SHEET 6 A 6 LEU A 52 MET A 59 -1 N LYS A 53 O LYS A 71 SHEET 1 B 5 THR A 17 PRO A 20 0 SHEET 2 B 5 ARG A 26 ASN A 34 -1 O ARG A 30 N THR A 17 SHEET 3 B 5 GLN A 118 SER A 126 -1 O ARG A 125 N LEU A 27 SHEET 4 B 5 GLU A 89 TRP A 93 -1 N LEU A 91 O VAL A 122 SHEET 5 B 5 ARG A 96 LEU A 97 -1 O ARG A 96 N TRP A 93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1