data_1WH6 # _entry.id 1WH6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WH6 pdb_00001wh6 10.2210/pdb1wh6/pdb RCSB RCSB023576 ? ? WWPDB D_1000023576 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002100285.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WH6 _pdbx_database_status.recvd_initial_deposition_date 2004-05-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nameki, N.' 1 'Tochio, N.' 2 'Koshiba, S.' 3 'Kigawa, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the second CUT domain of human Homeobox protein Cux-2' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nameki, N.' 1 ? primary 'Tochio, N.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Homeobox protein Cux-2' _entity.formula_weight 11076.532 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'CUT domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cut-like 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGQYELYMYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWL SDQLGQAVGQQPGASSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGQYELYMYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWL SDQLGQAVGQQPGASSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002100285.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLN n 1 9 TYR n 1 10 GLU n 1 11 LEU n 1 12 TYR n 1 13 MET n 1 14 TYR n 1 15 ARG n 1 16 GLU n 1 17 VAL n 1 18 ASP n 1 19 THR n 1 20 LEU n 1 21 GLU n 1 22 LEU n 1 23 THR n 1 24 ARG n 1 25 GLN n 1 26 VAL n 1 27 LYS n 1 28 GLU n 1 29 LYS n 1 30 LEU n 1 31 ALA n 1 32 LYS n 1 33 ASN n 1 34 GLY n 1 35 ILE n 1 36 CYS n 1 37 GLN n 1 38 ARG n 1 39 ILE n 1 40 PHE n 1 41 GLY n 1 42 GLU n 1 43 LYS n 1 44 VAL n 1 45 LEU n 1 46 GLY n 1 47 LEU n 1 48 SER n 1 49 GLN n 1 50 GLY n 1 51 SER n 1 52 VAL n 1 53 SER n 1 54 ASP n 1 55 MET n 1 56 LEU n 1 57 SER n 1 58 ARG n 1 59 PRO n 1 60 LYS n 1 61 PRO n 1 62 TRP n 1 63 SER n 1 64 LYS n 1 65 LEU n 1 66 THR n 1 67 GLN n 1 68 LYS n 1 69 GLY n 1 70 ARG n 1 71 GLU n 1 72 PRO n 1 73 PHE n 1 74 ILE n 1 75 ARG n 1 76 MET n 1 77 GLN n 1 78 LEU n 1 79 TRP n 1 80 LEU n 1 81 SER n 1 82 ASP n 1 83 GLN n 1 84 LEU n 1 85 GLY n 1 86 GLN n 1 87 ALA n 1 88 VAL n 1 89 GLY n 1 90 GLN n 1 91 GLN n 1 92 PRO n 1 93 GLY n 1 94 ALA n 1 95 SER n 1 96 SER n 1 97 GLY n 1 98 PRO n 1 99 SER n 1 100 SER n 1 101 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'KAZUSA cDNA hg03205' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040114-61 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CUTL2_HUMAN _struct_ref.pdbx_db_accession O14529 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QYELYMYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQA VGQQPGAS ; _struct_ref.pdbx_align_begin 906 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WH6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 95 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O14529 _struct_ref_seq.db_align_beg 906 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 993 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 95 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WH6 GLY A 1 ? UNP O14529 ? ? 'cloning artifact' 1 1 1 1WH6 SER A 2 ? UNP O14529 ? ? 'cloning artifact' 2 2 1 1WH6 SER A 3 ? UNP O14529 ? ? 'cloning artifact' 3 3 1 1WH6 GLY A 4 ? UNP O14529 ? ? 'cloning artifact' 4 4 1 1WH6 SER A 5 ? UNP O14529 ? ? 'cloning artifact' 5 5 1 1WH6 SER A 6 ? UNP O14529 ? ? 'cloning artifact' 6 6 1 1WH6 GLY A 7 ? UNP O14529 ? ? 'cloning artifact' 7 7 1 1WH6 SER A 96 ? UNP O14529 ? ? 'cloning artifact' 96 8 1 1WH6 GLY A 97 ? UNP O14529 ? ? 'cloning artifact' 97 9 1 1WH6 PRO A 98 ? UNP O14529 ? ? 'cloning artifact' 98 10 1 1WH6 SER A 99 ? UNP O14529 ? ? 'cloning artifact' 99 11 1 1WH6 SER A 100 ? UNP O14529 ? ? 'cloning artifact' 100 12 1 1WH6 GLY A 101 ? UNP O14529 ? ? 'cloning artifact' 101 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 2 1 1 3D_13C-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.3mM CUT domain U-15N, 13C; 20mM phosphate buffer NA (pH 6.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 700 # _pdbx_nmr_refine.entry_id 1WH6 _pdbx_nmr_refine.method 'torsion angle dynamics, restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1WH6 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WH6 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 3.5 collection Bruker 1 NMRPipe 20020425 processing 'Delaglio, F.' 2 NMRView 5.0.4 'data analysis' 'Johnson, B.A.' 3 KUJIRA 0.901 'data analysis' 'Kobayashi, N.' 4 CYANA 1.0.7 'data analysis' 'Guentert, P.' 5 OPALp ? refinement 'Koradi, R.,Billeter, M.,Guentert, P.' 6 # _exptl.entry_id 1WH6 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1WH6 _struct.title 'Solution structure of the second CUT domain of human Homeobox protein Cux-2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WH6 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'CUT domain, Structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSCRIPTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 9 ? ARG A 15 ? TYR A 9 ARG A 15 1 ? 7 HELX_P HELX_P2 2 ASP A 18 ? LYS A 32 ? ASP A 18 LYS A 32 1 ? 15 HELX_P HELX_P3 3 CYS A 36 ? VAL A 44 ? CYS A 36 VAL A 44 1 ? 9 HELX_P HELX_P4 4 SER A 48 ? ARG A 58 ? SER A 48 ARG A 58 1 ? 11 HELX_P HELX_P5 5 THR A 66 ? GLN A 83 ? THR A 66 GLN A 83 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1WH6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WH6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 MET 13 13 13 MET MET A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 MET 55 55 55 MET MET A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 TRP 62 62 62 TRP TRP A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 MET 76 76 76 MET MET A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 TRP 79 79 79 TRP TRP A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLY 101 101 101 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 7 _pdbx_validate_close_contact.auth_atom_id_1 HG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 2 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 21 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.58 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 11 CD A ARG 24 ? ? NE A ARG 24 ? ? CZ A ARG 24 ? ? 132.10 123.60 8.50 1.40 N 2 12 NE A ARG 70 ? ? CZ A ARG 70 ? ? NH2 A ARG 70 ? ? 116.30 120.30 -4.00 0.50 N 3 17 NE A ARG 75 ? ? CZ A ARG 75 ? ? NH2 A ARG 75 ? ? 116.36 120.30 -3.94 0.50 N 4 18 NE A ARG 38 ? ? CZ A ARG 38 ? ? NH2 A ARG 38 ? ? 116.96 120.30 -3.34 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -153.57 83.70 2 1 SER A 5 ? ? 75.68 -59.21 3 1 LYS A 43 ? ? -90.50 -61.61 4 1 GLN A 83 ? ? 59.67 -3.55 5 1 LEU A 84 ? ? 39.86 70.91 6 1 GLN A 86 ? ? -65.47 -75.95 7 1 ALA A 94 ? ? 140.35 160.30 8 2 SER A 2 ? ? -170.22 149.40 9 2 SER A 5 ? ? -163.01 -72.57 10 2 SER A 6 ? ? -143.21 -87.10 11 2 GLN A 8 ? ? 58.83 175.07 12 2 GLN A 83 ? ? 54.58 -3.60 13 2 LEU A 84 ? ? 54.97 95.21 14 2 GLN A 86 ? ? -148.32 -55.08 15 2 SER A 99 ? ? 43.08 72.62 16 3 ARG A 15 ? ? -113.29 -156.16 17 3 GLN A 83 ? ? 100.27 -28.29 18 3 LEU A 84 ? ? 44.71 -68.34 19 3 ALA A 87 ? ? -175.00 -164.34 20 3 VAL A 88 ? ? 76.41 145.82 21 3 SER A 96 ? ? 35.09 100.68 22 4 SER A 3 ? ? 58.79 77.02 23 4 SER A 6 ? ? -64.47 97.32 24 4 GLN A 8 ? ? 43.96 -173.41 25 4 TYR A 14 ? ? -124.31 -60.24 26 4 GLN A 83 ? ? 51.87 11.42 27 4 LEU A 84 ? ? 36.00 71.25 28 4 GLN A 86 ? ? -139.52 -75.32 29 4 SER A 95 ? ? -166.12 114.34 30 4 SER A 96 ? ? 40.86 75.68 31 4 SER A 99 ? ? 73.62 -27.60 32 5 SER A 3 ? ? -69.99 62.28 33 5 GLN A 8 ? ? 53.63 -165.10 34 5 VAL A 44 ? ? -74.79 -70.46 35 5 GLN A 83 ? ? 56.80 0.54 36 5 LEU A 84 ? ? 48.18 79.08 37 5 ALA A 87 ? ? -167.24 59.15 38 5 GLN A 90 ? ? 85.22 113.36 39 5 GLN A 91 ? ? 65.49 163.14 40 5 SER A 95 ? ? -141.36 54.50 41 6 SER A 2 ? ? 63.59 173.86 42 6 SER A 3 ? ? -149.44 -69.57 43 6 SER A 5 ? ? -159.41 85.79 44 6 GLN A 83 ? ? 61.45 -10.06 45 6 LEU A 84 ? ? 45.36 74.63 46 6 ALA A 87 ? ? -170.07 105.30 47 6 SER A 100 ? ? 53.11 -162.91 48 7 SER A 5 ? ? 69.52 159.69 49 7 ARG A 15 ? ? -125.06 -155.73 50 7 VAL A 44 ? ? -76.88 -72.80 51 7 LEU A 84 ? ? 48.58 84.55 52 7 GLN A 86 ? ? -133.35 -82.65 53 7 VAL A 88 ? ? -145.25 59.49 54 7 SER A 96 ? ? 52.45 -176.01 55 7 SER A 100 ? ? 64.53 -176.90 56 8 GLN A 83 ? ? 60.49 -17.22 57 8 LEU A 84 ? ? 38.10 66.80 58 8 ALA A 94 ? ? 63.04 105.63 59 8 SER A 100 ? ? -132.29 -103.97 60 9 SER A 3 ? ? 48.79 102.81 61 9 ARG A 15 ? ? -72.04 -169.83 62 9 ARG A 58 ? ? -152.29 75.97 63 9 GLN A 83 ? ? 48.18 6.02 64 9 LEU A 84 ? ? 59.13 143.96 65 9 ALA A 87 ? ? -164.48 114.51 66 9 GLN A 90 ? ? -143.56 50.01 67 10 SER A 5 ? ? -163.21 68.64 68 10 GLN A 83 ? ? 59.87 4.35 69 10 LEU A 84 ? ? 41.65 75.29 70 10 GLN A 90 ? ? 151.33 97.79 71 10 SER A 99 ? ? 63.42 -171.50 72 10 SER A 100 ? ? -151.77 -51.71 73 11 SER A 5 ? ? -169.06 -45.54 74 11 TYR A 14 ? ? -108.33 -68.65 75 11 LEU A 84 ? ? -43.21 -78.67 76 11 GLN A 86 ? ? -147.45 -63.61 77 11 ALA A 87 ? ? -179.79 -179.82 78 11 VAL A 88 ? ? -69.35 12.79 79 12 SER A 5 ? ? 66.85 175.73 80 12 VAL A 44 ? ? -96.38 -61.74 81 12 GLN A 83 ? ? 58.41 -14.59 82 12 LEU A 84 ? ? 50.78 106.69 83 12 GLN A 86 ? ? -133.70 -77.76 84 12 ALA A 94 ? ? 51.87 81.62 85 12 SER A 100 ? ? 68.81 -40.43 86 13 SER A 6 ? ? 57.53 -162.12 87 13 TYR A 14 ? ? -126.33 -132.98 88 13 ARG A 15 ? ? 42.37 -154.09 89 13 GLN A 83 ? ? 54.26 2.52 90 13 LEU A 84 ? ? 58.42 146.25 91 13 GLN A 86 ? ? -79.79 -81.88 92 13 SER A 95 ? ? 46.18 100.80 93 13 SER A 100 ? ? 54.37 179.47 94 14 SER A 2 ? ? -138.68 -87.03 95 14 SER A 5 ? ? -69.70 97.22 96 14 GLN A 8 ? ? 51.39 -174.40 97 14 ARG A 15 ? ? -95.05 -145.40 98 14 GLN A 83 ? ? 56.69 12.34 99 14 LEU A 84 ? ? 44.56 87.62 100 14 ALA A 87 ? ? -166.02 97.18 101 15 SER A 2 ? ? -85.23 -81.80 102 15 TYR A 14 ? ? -106.43 -67.75 103 15 GLN A 83 ? ? 52.72 14.07 104 15 LEU A 84 ? ? 42.84 75.51 105 15 GLN A 86 ? ? -151.98 -58.08 106 15 SER A 99 ? ? 54.91 176.44 107 16 SER A 2 ? ? 65.58 162.51 108 16 SER A 5 ? ? 61.34 148.92 109 16 LYS A 43 ? ? -120.03 -63.31 110 16 ARG A 58 ? ? -151.66 70.96 111 16 GLN A 83 ? ? 55.31 -9.16 112 16 LEU A 84 ? ? 53.52 114.34 113 16 GLN A 86 ? ? -138.93 -89.33 114 16 ALA A 87 ? ? -157.80 71.59 115 16 VAL A 88 ? ? 79.72 158.87 116 17 SER A 2 ? ? -163.61 -56.52 117 17 SER A 3 ? ? -126.85 -75.03 118 17 GLN A 83 ? ? 56.40 -8.40 119 17 ALA A 87 ? ? -164.48 75.12 120 17 ALA A 94 ? ? 22.84 87.61 121 17 SER A 95 ? ? -66.60 78.83 122 17 SER A 99 ? ? -89.54 -158.15 123 18 SER A 5 ? ? 69.23 -56.89 124 18 GLN A 83 ? ? 56.01 -4.09 125 18 LEU A 84 ? ? 53.33 87.76 126 18 ALA A 87 ? ? 177.53 145.80 127 18 GLN A 90 ? ? 41.92 -139.74 128 19 SER A 2 ? ? 56.41 -176.76 129 19 SER A 3 ? ? 7.95 92.26 130 19 SER A 5 ? ? -155.44 -71.14 131 19 SER A 6 ? ? 71.54 61.87 132 19 ARG A 15 ? ? -76.64 -153.38 133 19 GLN A 83 ? ? 49.69 0.47 134 19 LEU A 84 ? ? 57.38 103.75 135 19 GLN A 86 ? ? -131.18 -59.94 136 19 GLN A 90 ? ? 56.25 160.19 137 19 ALA A 94 ? ? -158.91 20.68 138 19 SER A 95 ? ? -24.46 109.70 139 20 SER A 2 ? ? -162.92 -80.25 140 20 GLN A 8 ? ? 49.65 -176.98 141 20 GLN A 83 ? ? 58.22 -12.14 142 20 LEU A 84 ? ? 51.46 100.85 143 20 GLN A 86 ? ? -44.46 -73.06 144 20 ALA A 87 ? ? -161.75 78.24 145 20 GLN A 91 ? ? 58.91 166.66 146 20 ALA A 94 ? ? -78.97 -73.39 147 20 SER A 95 ? ? 66.92 141.26 148 20 SER A 96 ? ? -164.13 115.95 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 SER A 100 ? ? GLY A 101 ? ? -128.38 2 4 GLY A 1 ? ? SER A 2 ? ? 141.30 3 9 SER A 100 ? ? GLY A 101 ? ? 146.12 4 10 SER A 100 ? ? GLY A 101 ? ? 127.70 5 13 SER A 100 ? ? GLY A 101 ? ? -147.56 6 19 SER A 100 ? ? GLY A 101 ? ? -137.25 7 20 GLN A 83 ? ? LEU A 84 ? ? -148.02 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR A 12 ? ? 0.104 'SIDE CHAIN' 2 1 TYR A 14 ? ? 0.101 'SIDE CHAIN' 3 1 ARG A 38 ? ? 0.077 'SIDE CHAIN' 4 2 TYR A 14 ? ? 0.071 'SIDE CHAIN' 5 2 ARG A 15 ? ? 0.095 'SIDE CHAIN' 6 4 ARG A 24 ? ? 0.088 'SIDE CHAIN' 7 6 ARG A 15 ? ? 0.103 'SIDE CHAIN' 8 6 ARG A 24 ? ? 0.080 'SIDE CHAIN' 9 7 ARG A 38 ? ? 0.078 'SIDE CHAIN' 10 11 TYR A 9 ? ? 0.085 'SIDE CHAIN' 11 12 ARG A 75 ? ? 0.104 'SIDE CHAIN' 12 13 ARG A 24 ? ? 0.096 'SIDE CHAIN' 13 15 TYR A 12 ? ? 0.074 'SIDE CHAIN' 14 15 ARG A 58 ? ? 0.079 'SIDE CHAIN' 15 16 TYR A 9 ? ? 0.072 'SIDE CHAIN' 16 16 TYR A 12 ? ? 0.073 'SIDE CHAIN' 17 19 ARG A 58 ? ? 0.111 'SIDE CHAIN' 18 20 TYR A 12 ? ? 0.083 'SIDE CHAIN' #