data_1WHL # _entry.id 1WHL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WHL pdb_00001whl 10.2210/pdb1whl/pdb RCSB RCSB023588 ? ? WWPDB D_1000023588 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk001000012.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WHL _pdbx_database_status.recvd_initial_deposition_date 2004-05-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Saito, K.' 1 'Koshiba, S.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the 1st CAP-Gly domain in human cylindromatosis tumor suppressor CYLD' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Saito, K.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Cylindromatosis tumor suppressor CYLD' _entity.formula_weight 10037.231 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'CAP-Gly domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'KIAA0849 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFV ALDKLELIESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFV ALDKLELIESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk001000012.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ILE n 1 9 ASP n 1 10 VAL n 1 11 GLY n 1 12 CYS n 1 13 PRO n 1 14 VAL n 1 15 LYS n 1 16 VAL n 1 17 GLN n 1 18 LEU n 1 19 ARG n 1 20 SER n 1 21 GLY n 1 22 GLU n 1 23 GLU n 1 24 LYS n 1 25 PHE n 1 26 PRO n 1 27 GLY n 1 28 VAL n 1 29 VAL n 1 30 ARG n 1 31 PHE n 1 32 ARG n 1 33 GLY n 1 34 PRO n 1 35 LEU n 1 36 LEU n 1 37 ALA n 1 38 GLU n 1 39 ARG n 1 40 THR n 1 41 VAL n 1 42 SER n 1 43 GLY n 1 44 ILE n 1 45 PHE n 1 46 PHE n 1 47 GLY n 1 48 VAL n 1 49 GLU n 1 50 LEU n 1 51 LEU n 1 52 GLU n 1 53 GLU n 1 54 GLY n 1 55 ARG n 1 56 GLY n 1 57 GLN n 1 58 GLY n 1 59 PHE n 1 60 THR n 1 61 ASP n 1 62 GLY n 1 63 VAL n 1 64 TYR n 1 65 GLN n 1 66 GLY n 1 67 LYS n 1 68 GLN n 1 69 LEU n 1 70 PHE n 1 71 GLN n 1 72 CYS n 1 73 ASP n 1 74 GLU n 1 75 ASP n 1 76 CYS n 1 77 GLY n 1 78 VAL n 1 79 PHE n 1 80 VAL n 1 81 ALA n 1 82 LEU n 1 83 ASP n 1 84 LYS n 1 85 LEU n 1 86 GLU n 1 87 LEU n 1 88 ILE n 1 89 GLU n 1 90 SER n 1 91 GLY n 1 92 PRO n 1 93 SER n 1 94 SER n 1 95 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'Kazusa cDNA fh04363' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P031006-33 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free Protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CYLD_HUMAN _struct_ref.pdbx_db_accession Q9NQC7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKLEL IE ; _struct_ref.pdbx_align_begin 132 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WHL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 89 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NQC7 _struct_ref_seq.db_align_beg 132 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 213 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 89 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WHL GLY A 1 ? UNP Q9NQC7 ? ? 'cloning artifact' 1 1 1 1WHL SER A 2 ? UNP Q9NQC7 ? ? 'cloning artifact' 2 2 1 1WHL SER A 3 ? UNP Q9NQC7 ? ? 'cloning artifact' 3 3 1 1WHL GLY A 4 ? UNP Q9NQC7 ? ? 'cloning artifact' 4 4 1 1WHL SER A 5 ? UNP Q9NQC7 ? ? 'cloning artifact' 5 5 1 1WHL SER A 6 ? UNP Q9NQC7 ? ? 'cloning artifact' 6 6 1 1WHL GLY A 7 ? UNP Q9NQC7 ? ? 'cloning artifact' 7 7 1 1WHL SER A 90 ? UNP Q9NQC7 ? ? 'cloning artifact' 90 8 1 1WHL GLY A 91 ? UNP Q9NQC7 ? ? 'cloning artifact' 91 9 1 1WHL PRO A 92 ? UNP Q9NQC7 ? ? 'cloning artifact' 92 10 1 1WHL SER A 93 ? UNP Q9NQC7 ? ? 'cloning artifact' 93 11 1 1WHL SER A 94 ? UNP Q9NQC7 ? ? 'cloning artifact' 94 12 1 1WHL GLY A 95 ? UNP Q9NQC7 ? ? 'cloning artifact' 95 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1mM protein, 20mM sodium phosphate buffer, pH 6.0, 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 800 # _pdbx_nmr_refine.entry_id 1WHL _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1WHL _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WHL _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 collection Bruker 1 NMRPipe 20020425 processing 'Delaglio, F.' 2 NMRView 5 'data analysis' 'Johnson, B.A.' 3 CNS 1.1 'structure solution' 'Brunger, A.T.' 4 CNS 1.1 refinement 'Brunger, A.T.' 5 # _exptl.entry_id 1WHL _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1WHL _struct.title 'Solution structure of the 1st CAP-Gly domain in human cylindromatosis tumor suppressor CYLD' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WHL _struct_keywords.pdbx_keywords 'ANTITUMOR PROTEIN' _struct_keywords.text ;Tumor suppressor, deubiquitinating enzyme, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, ANTITUMOR PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 81 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASP _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 83 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 81 _struct_conf.end_auth_comp_id ASP _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 83 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 77 ? VAL A 80 ? GLY A 77 VAL A 80 A 2 PHE A 46 ? LEU A 50 ? PHE A 46 LEU A 50 A 3 LYS A 24 ? ARG A 32 ? LYS A 24 ARG A 32 A 4 PRO A 13 ? GLN A 17 ? PRO A 13 GLN A 17 A 5 LEU A 85 ? LEU A 87 ? LEU A 85 LEU A 87 B 1 VAL A 63 ? TYR A 64 ? VAL A 63 TYR A 64 B 2 LYS A 67 ? GLN A 68 ? LYS A 67 GLN A 68 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 78 ? O VAL A 78 N VAL A 48 ? N VAL A 48 A 2 3 O GLY A 47 ? O GLY A 47 N ARG A 30 ? N ARG A 30 A 3 4 O PHE A 25 ? O PHE A 25 N VAL A 16 ? N VAL A 16 A 4 5 N LYS A 15 ? N LYS A 15 O GLU A 86 ? O GLU A 86 B 1 2 N TYR A 64 ? N TYR A 64 O LYS A 67 ? O LYS A 67 # _database_PDB_matrix.entry_id 1WHL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WHL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 CYS 72 72 72 CYS CYS A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 GLY 95 95 95 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? -127.06 -67.06 2 1 SER A 6 ? ? 60.17 -172.89 3 1 GLU A 23 ? ? -176.62 126.87 4 1 PRO A 34 ? ? -56.67 -173.16 5 1 LEU A 35 ? ? -148.57 -61.29 6 1 THR A 40 ? ? -141.09 -61.49 7 1 GLN A 57 ? ? -140.89 33.25 8 1 ASP A 73 ? ? -68.78 -179.98 9 1 CYS A 76 ? ? -130.10 -46.75 10 1 SER A 90 ? ? -98.40 35.45 11 2 SER A 6 ? ? -79.33 -77.62 12 2 PRO A 34 ? ? -53.72 -176.98 13 2 LEU A 35 ? ? -95.73 -63.58 14 2 SER A 90 ? ? 56.28 96.38 15 3 GLU A 22 ? ? -120.45 -58.16 16 3 LEU A 35 ? ? -124.10 -66.52 17 3 GLU A 38 ? ? -137.03 -70.28 18 3 ARG A 39 ? ? -145.45 -46.83 19 3 THR A 40 ? ? -161.07 35.42 20 3 CYS A 76 ? ? -129.93 -58.34 21 3 SER A 93 ? ? 59.61 172.63 22 4 SER A 2 ? ? -170.36 126.94 23 4 SER A 6 ? ? -155.27 -45.89 24 4 LEU A 35 ? ? -121.02 -55.41 25 4 ALA A 37 ? ? -143.62 33.03 26 4 SER A 42 ? ? -146.25 -48.15 27 4 CYS A 76 ? ? -130.06 -51.79 28 5 ALA A 37 ? ? -146.26 48.02 29 5 GLU A 38 ? ? -177.68 -40.59 30 5 THR A 40 ? ? 62.87 -78.95 31 5 SER A 42 ? ? -168.73 109.75 32 6 PRO A 34 ? ? -69.04 -177.95 33 6 ALA A 37 ? ? 60.66 79.01 34 6 GLN A 57 ? ? -143.40 33.39 35 6 CYS A 76 ? ? -130.07 -63.93 36 6 SER A 90 ? ? -161.01 49.31 37 7 SER A 5 ? ? -163.28 -45.61 38 7 THR A 40 ? ? 57.06 97.65 39 7 SER A 42 ? ? -167.88 35.18 40 7 GLN A 57 ? ? -141.47 31.36 41 8 SER A 2 ? ? 61.26 153.77 42 8 SER A 3 ? ? 58.18 179.60 43 8 ARG A 19 ? ? -61.80 -174.78 44 8 SER A 20 ? ? -93.00 48.37 45 8 GLU A 22 ? ? -121.43 -51.93 46 8 CYS A 76 ? ? -130.04 -49.28 47 9 SER A 2 ? ? 60.43 95.45 48 9 SER A 5 ? ? -98.82 31.50 49 9 SER A 20 ? ? -100.04 48.26 50 9 GLU A 22 ? ? -128.95 -60.45 51 9 PRO A 34 ? ? -54.96 -169.31 52 9 ALA A 37 ? ? -168.70 77.42 53 9 SER A 42 ? ? -107.07 -67.43 54 9 GLN A 57 ? ? -140.90 43.84 55 9 SER A 93 ? ? -161.06 -63.87 56 10 SER A 5 ? ? -170.82 -51.02 57 10 SER A 6 ? ? 60.31 166.88 58 10 ARG A 19 ? ? -69.42 -174.99 59 10 GLU A 23 ? ? -176.66 131.56 60 10 LEU A 36 ? ? 59.92 176.96 61 10 ALA A 37 ? ? -171.30 124.37 62 10 CYS A 76 ? ? -125.18 -52.83 63 10 SER A 90 ? ? -140.61 -68.52 64 10 SER A 94 ? ? -161.98 89.42 65 11 SER A 2 ? ? 60.42 176.65 66 11 SER A 3 ? ? -90.33 -65.85 67 11 SER A 6 ? ? -92.01 -78.00 68 11 ARG A 19 ? ? -68.98 -170.27 69 11 GLU A 22 ? ? -101.62 -66.54 70 11 PRO A 34 ? ? -54.74 -174.01 71 11 GLU A 38 ? ? -67.15 -74.97 72 11 ARG A 39 ? ? -131.14 -78.24 73 11 SER A 42 ? ? -160.01 -60.64 74 11 SER A 94 ? ? -149.01 -48.09 75 12 SER A 6 ? ? 59.84 -176.78 76 12 GLU A 22 ? ? -133.38 -57.70 77 12 LEU A 36 ? ? 59.80 172.90 78 12 GLU A 38 ? ? -91.59 -67.08 79 12 GLN A 57 ? ? -145.40 35.19 80 12 SER A 93 ? ? -66.51 99.52 81 12 SER A 94 ? ? 60.90 178.91 82 13 SER A 3 ? ? -159.82 -45.33 83 13 SER A 5 ? ? -150.26 -50.38 84 13 GLU A 22 ? ? -101.94 -61.86 85 13 ARG A 32 ? ? -160.85 119.39 86 13 ALA A 37 ? ? -164.38 87.92 87 13 GLU A 38 ? ? -115.43 -73.07 88 13 GLN A 57 ? ? -141.69 37.63 89 13 CYS A 76 ? ? -129.96 -51.65 90 13 SER A 90 ? ? -92.89 -75.25 91 14 SER A 2 ? ? -99.34 34.35 92 14 ARG A 19 ? ? -68.45 -175.86 93 14 THR A 40 ? ? -154.16 -47.81 94 14 CYS A 76 ? ? -127.61 -55.84 95 15 GLU A 22 ? ? -95.03 -61.97 96 15 ALA A 37 ? ? -167.87 33.61 97 15 GLU A 38 ? ? -170.33 -65.72 98 15 ARG A 39 ? ? -176.13 -68.84 99 15 GLN A 57 ? ? -140.97 33.38 100 15 GLN A 68 ? ? -69.72 95.56 101 15 CYS A 76 ? ? -129.57 -56.47 102 15 PRO A 92 ? ? -54.15 -171.78 103 15 SER A 94 ? ? -60.77 -73.11 104 16 SER A 5 ? ? -96.34 -64.79 105 16 SER A 6 ? ? -63.44 -172.21 106 16 GLU A 22 ? ? -149.46 -58.46 107 16 LEU A 36 ? ? 60.62 -176.21 108 16 GLU A 38 ? ? -97.29 -67.44 109 16 VAL A 41 ? ? -97.64 33.78 110 16 GLN A 57 ? ? -141.51 43.42 111 16 CYS A 76 ? ? -129.87 -60.84 112 16 SER A 94 ? ? -175.92 -43.61 113 17 ARG A 19 ? ? -78.02 -169.84 114 17 GLU A 22 ? ? -124.03 -52.86 115 17 GLU A 23 ? ? -176.06 139.89 116 17 LEU A 35 ? ? -120.08 -60.97 117 17 ALA A 37 ? ? -162.25 111.69 118 17 GLU A 38 ? ? -160.81 -58.71 119 17 GLN A 57 ? ? -140.68 38.84 120 17 CYS A 76 ? ? -121.46 -64.61 121 17 SER A 94 ? ? -155.82 -54.87 122 18 SER A 5 ? ? -159.09 31.95 123 18 GLU A 22 ? ? -122.44 -65.09 124 18 GLU A 38 ? ? -130.31 -68.43 125 18 GLN A 57 ? ? -141.08 32.57 126 18 GLU A 89 ? ? -121.36 -69.51 127 18 SER A 90 ? ? -176.86 -40.17 128 19 SER A 3 ? ? 61.35 113.24 129 19 SER A 20 ? ? -68.27 74.40 130 19 LEU A 35 ? ? -153.01 -71.99 131 19 ARG A 39 ? ? 62.85 -79.61 132 19 SER A 42 ? ? 60.21 100.73 133 19 GLN A 57 ? ? -140.25 34.54 134 19 GLN A 68 ? ? -68.08 89.99 135 19 CYS A 76 ? ? -130.03 -58.80 136 19 SER A 90 ? ? 59.78 110.60 137 20 SER A 5 ? ? -168.73 -69.88 138 20 SER A 6 ? ? -60.41 -173.30 139 20 ILE A 8 ? ? -68.39 94.95 140 20 GLU A 22 ? ? -130.00 -66.40 141 20 PRO A 34 ? ? -54.76 -170.26 142 20 LEU A 35 ? ? -115.94 -71.67 143 20 SER A 42 ? ? -176.39 68.63 #