data_1WI7 # _entry.id 1WI7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WI7 pdb_00001wi7 10.2210/pdb1wi7/pdb RCSB RCSB023606 ? ? WWPDB D_1000023606 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt007014343 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WI7 _pdbx_database_status.recvd_initial_deposition_date 2004-05-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Inoue, K.' 1 'Hayashi, F.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Solution structure of the SH3 domain of SH3-domain kinase binding protein 1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Inoue, K.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yokoyama, S.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'SH3-domain kinase binding protein 1' _entity.formula_weight 7282.977 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'SH3 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SH3 containing, expressed in tumorigenic astrocytes, Regulator of ubiquitous kinase, Ruk' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt007014343 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ARG n 1 9 ARG n 1 10 CYS n 1 11 GLN n 1 12 VAL n 1 13 ALA n 1 14 PHE n 1 15 SER n 1 16 TYR n 1 17 LEU n 1 18 PRO n 1 19 GLN n 1 20 ASN n 1 21 ASP n 1 22 ASP n 1 23 GLU n 1 24 LEU n 1 25 GLU n 1 26 LEU n 1 27 LYS n 1 28 VAL n 1 29 GLY n 1 30 ASP n 1 31 ILE n 1 32 ILE n 1 33 GLU n 1 34 VAL n 1 35 VAL n 1 36 GLY n 1 37 GLU n 1 38 VAL n 1 39 GLU n 1 40 GLU n 1 41 GLY n 1 42 TRP n 1 43 TRP n 1 44 GLU n 1 45 GLY n 1 46 VAL n 1 47 LEU n 1 48 ASN n 1 49 GLY n 1 50 LYS n 1 51 THR n 1 52 GLY n 1 53 MET n 1 54 PHE n 1 55 PRO n 1 56 SER n 1 57 ASN n 1 58 PHE n 1 59 ILE n 1 60 LYS n 1 61 GLU n 1 62 LEU n 1 63 SER n 1 64 GLY n 1 65 PRO n 1 66 SER n 1 67 SER n 1 68 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'RIKEN cDNA 5830464D22' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P030128-04 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SH3K1_MOUSE _struct_ref.pdbx_db_accession Q8R550 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKEL _struct_ref.pdbx_align_begin 101 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WI7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 62 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8R550 _struct_ref_seq.db_align_beg 101 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 155 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 62 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WI7 GLY A 1 ? UNP Q8R550 ? ? 'cloning artifact' 1 1 1 1WI7 SER A 2 ? UNP Q8R550 ? ? 'cloning artifact' 2 2 1 1WI7 SER A 3 ? UNP Q8R550 ? ? 'cloning artifact' 3 3 1 1WI7 GLY A 4 ? UNP Q8R550 ? ? 'cloning artifact' 4 4 1 1WI7 SER A 5 ? UNP Q8R550 ? ? 'cloning artifact' 5 5 1 1WI7 SER A 6 ? UNP Q8R550 ? ? 'cloning artifact' 6 6 1 1WI7 GLY A 7 ? UNP Q8R550 ? ? 'cloning artifact' 7 7 1 1WI7 SER A 63 ? UNP Q8R550 ? ? 'cloning artifact' 63 8 1 1WI7 GLY A 64 ? UNP Q8R550 ? ? 'cloning artifact' 64 9 1 1WI7 PRO A 65 ? UNP Q8R550 ? ? 'cloning artifact' 65 10 1 1WI7 SER A 66 ? UNP Q8R550 ? ? 'cloning artifact' 66 11 1 1WI7 SER A 67 ? UNP Q8R550 ? ? 'cloning artifact' 67 12 1 1WI7 GLY A 68 ? UNP Q8R550 ? ? 'cloning artifact' 68 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.61mM 13C, 15N-labeled protein; 20mM PiNa; 100mM NaCl; 1mM d-DTT; 0.02% NaN3' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 800 # _pdbx_nmr_refine.entry_id 1WI7 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1WI7 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WI7 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal VNMR 6.1C collection Varian 1 NMRPipe 20020425 processing 'Delaglio, F.' 2 NMRView 5.0.4 'data analysis' 'Johnson, B.A.' 3 KUJIRA 0.8992 'data analysis' 'Kobayashi, N.' 4 CYANA 1.0.7 'structure solution' 'Guentert, P.' 5 CYANA 1.0.7 refinement 'Guentert, P.' 6 # _exptl.entry_id 1WI7 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1WI7 _struct.title 'Solution structure of the SH3 domain of SH3-domain kinase binding protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WI7 _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'BETA BARREL, Sh3kbp1, Ruk, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, PROTEIN BINDING' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 31 ? ILE A 32 ? ILE A 31 ILE A 32 A 2 CYS A 10 ? VAL A 12 ? CYS A 10 VAL A 12 A 3 ILE A 59 ? GLU A 61 ? ILE A 59 GLU A 61 B 1 GLY A 36 ? GLU A 39 ? GLY A 36 GLU A 39 B 2 TRP A 42 ? GLY A 45 ? TRP A 42 GLY A 45 B 3 GLY A 52 ? PRO A 55 ? GLY A 52 PRO A 55 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 32 ? O ILE A 32 N CYS A 10 ? N CYS A 10 A 2 3 N GLN A 11 ? N GLN A 11 O LYS A 60 ? O LYS A 60 B 1 2 N GLU A 39 ? N GLU A 39 O TRP A 42 ? O TRP A 42 B 2 3 N TRP A 43 ? N TRP A 43 O PHE A 54 ? O PHE A 54 # _database_PDB_matrix.entry_id 1WI7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WI7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 TRP 43 43 43 TRP TRP A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 GLY 68 68 68 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-06-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A LYS 27 ? ? H A ASP 30 ? ? 1.49 2 1 O A GLU 39 ? ? H A TRP 42 ? ? 1.54 3 3 O A LYS 27 ? ? H A ASP 30 ? ? 1.50 4 3 O A GLU 39 ? ? H A TRP 42 ? ? 1.55 5 3 O A GLY 36 ? ? H A GLU 44 ? ? 1.56 6 3 H A LEU 47 ? ? O A LYS 50 ? ? 1.58 7 4 O A LYS 27 ? ? H A ASP 30 ? ? 1.48 8 4 O A GLU 39 ? ? H A TRP 42 ? ? 1.54 9 5 O A GLU 39 ? ? H A TRP 42 ? ? 1.54 10 6 O A LYS 27 ? ? H A ASP 30 ? ? 1.44 11 6 O A GLU 39 ? ? H A TRP 42 ? ? 1.54 12 6 H A GLU 33 ? ? O A VAL 46 ? ? 1.58 13 7 O A LYS 27 ? ? H A ASP 30 ? ? 1.48 14 7 O A GLU 39 ? ? H A TRP 42 ? ? 1.53 15 8 O A LYS 27 ? ? H A ASP 30 ? ? 1.50 16 8 O A GLU 39 ? ? H A TRP 42 ? ? 1.55 17 9 O A GLU 39 ? ? H A TRP 42 ? ? 1.54 18 10 O A LYS 27 ? ? H A ASP 30 ? ? 1.44 19 10 O A GLU 39 ? ? H A TRP 42 ? ? 1.54 20 10 H A ARG 8 ? ? O A VAL 34 ? ? 1.58 21 11 O A LYS 27 ? ? H A ASP 30 ? ? 1.46 22 11 O A GLU 39 ? ? H A TRP 42 ? ? 1.53 23 11 H A GLY 36 ? ? O A GLU 44 ? ? 1.57 24 12 H A GLY 36 ? ? O A GLU 44 ? ? 1.51 25 12 O A GLY 36 ? ? H A GLU 44 ? ? 1.55 26 12 O A GLU 39 ? ? H A TRP 42 ? ? 1.57 27 13 O A LYS 27 ? ? H A ASP 30 ? ? 1.47 28 13 O A GLU 39 ? ? H A TRP 42 ? ? 1.54 29 14 O A LYS 27 ? ? H A ASP 30 ? ? 1.45 30 14 O A GLU 39 ? ? H A TRP 42 ? ? 1.55 31 15 O A LYS 27 ? ? H A ASP 30 ? ? 1.47 32 15 O A GLU 39 ? ? H A TRP 42 ? ? 1.57 33 16 O A GLU 39 ? ? H A TRP 42 ? ? 1.55 34 17 H A LEU 47 ? ? O A LYS 50 ? ? 1.52 35 17 O A GLU 39 ? ? H A TRP 42 ? ? 1.55 36 17 O A GLY 36 ? ? H A GLU 44 ? ? 1.58 37 19 O A LEU 47 ? ? H A LYS 50 ? ? 1.54 38 20 O A LYS 27 ? ? H A ASP 30 ? ? 1.47 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 6 ? ? -171.96 121.49 2 1 ASP A 21 ? ? -96.85 31.38 3 1 ASP A 22 ? ? -145.90 18.46 4 1 VAL A 28 ? ? -36.44 108.52 5 1 VAL A 38 ? ? -73.80 -74.41 6 2 SER A 3 ? ? -175.92 142.04 7 2 SER A 6 ? ? 48.18 93.14 8 2 ASP A 21 ? ? -91.19 35.61 9 2 ASP A 22 ? ? -151.28 21.41 10 2 VAL A 28 ? ? -36.06 105.01 11 2 GLU A 33 ? ? -63.92 77.71 12 2 PHE A 58 ? ? -147.16 36.92 13 2 SER A 63 ? ? 49.37 82.94 14 3 SER A 6 ? ? 65.04 112.77 15 3 ASP A 22 ? ? -148.08 19.83 16 3 VAL A 28 ? ? -36.60 105.69 17 3 PHE A 58 ? ? -140.23 35.20 18 3 SER A 67 ? ? 41.86 83.47 19 4 ASP A 21 ? ? -97.84 30.77 20 4 ASP A 22 ? ? -142.47 15.65 21 4 VAL A 28 ? ? -35.24 106.26 22 4 VAL A 38 ? ? -84.76 -73.56 23 4 PHE A 58 ? ? -142.12 32.51 24 4 GLU A 61 ? ? -47.53 171.18 25 5 ASP A 22 ? ? -179.58 -34.50 26 5 GLU A 23 ? ? -57.64 171.05 27 5 VAL A 28 ? ? -38.12 104.61 28 5 GLU A 33 ? ? -68.01 79.67 29 5 VAL A 34 ? ? -39.39 117.22 30 5 PHE A 58 ? ? -143.59 34.64 31 5 SER A 66 ? ? 76.21 -58.71 32 6 SER A 5 ? ? -39.67 118.24 33 6 SER A 6 ? ? -109.53 73.39 34 6 VAL A 28 ? ? -35.35 106.52 35 6 GLU A 33 ? ? -64.03 85.36 36 6 VAL A 38 ? ? -82.63 -73.54 37 6 LEU A 47 ? ? -60.51 -81.08 38 6 SER A 63 ? ? -178.71 113.80 39 6 SER A 66 ? ? -175.20 128.27 40 6 SER A 67 ? ? -136.95 -55.74 41 7 SER A 6 ? ? -119.32 79.12 42 7 VAL A 12 ? ? -41.15 106.16 43 7 VAL A 28 ? ? -34.62 112.62 44 7 VAL A 34 ? ? -38.99 111.43 45 7 GLU A 61 ? ? -39.30 156.65 46 7 SER A 67 ? ? 46.06 80.83 47 8 SER A 2 ? ? -171.26 -58.59 48 8 ASP A 22 ? ? -154.29 24.10 49 8 VAL A 28 ? ? -35.16 107.36 50 8 VAL A 38 ? ? -80.16 -74.47 51 8 GLU A 61 ? ? -47.75 169.00 52 9 SER A 2 ? ? -131.92 -56.71 53 9 SER A 3 ? ? -178.01 82.80 54 9 SER A 5 ? ? -150.44 -45.29 55 9 SER A 6 ? ? -56.91 103.02 56 9 ASN A 20 ? ? -129.35 -157.81 57 9 VAL A 28 ? ? -36.14 107.43 58 9 GLU A 33 ? ? -66.48 84.52 59 9 VAL A 38 ? ? -83.90 -72.24 60 9 PHE A 58 ? ? -141.37 34.15 61 9 GLU A 61 ? ? -47.06 170.81 62 10 SER A 3 ? ? 57.02 171.04 63 10 VAL A 12 ? ? -38.16 115.95 64 10 ASP A 22 ? ? -146.70 19.04 65 10 VAL A 28 ? ? -32.76 109.96 66 10 GLU A 33 ? ? -66.43 81.91 67 10 VAL A 38 ? ? -83.33 -71.95 68 10 GLU A 61 ? ? -43.21 157.38 69 10 SER A 66 ? ? 64.66 111.15 70 11 SER A 2 ? ? -139.84 -57.94 71 11 SER A 3 ? ? 67.69 111.37 72 11 SER A 5 ? ? -174.93 144.82 73 11 ASP A 22 ? ? -150.32 21.23 74 11 VAL A 28 ? ? -34.89 111.40 75 11 VAL A 34 ? ? -37.58 115.68 76 11 GLU A 61 ? ? -39.59 158.47 77 12 ASP A 22 ? ? -142.57 16.21 78 12 VAL A 28 ? ? -35.66 102.43 79 12 GLU A 33 ? ? -59.13 81.51 80 12 ASN A 48 ? ? -158.13 66.27 81 12 THR A 51 ? ? -170.51 145.54 82 12 PHE A 58 ? ? -148.90 33.91 83 12 SER A 63 ? ? 51.22 72.41 84 13 SER A 5 ? ? 61.46 159.93 85 13 ASP A 22 ? ? 173.61 -32.02 86 13 VAL A 28 ? ? -36.95 108.38 87 13 ASN A 48 ? ? 46.94 24.95 88 13 PHE A 58 ? ? -145.35 32.88 89 13 GLU A 61 ? ? -49.07 164.32 90 13 SER A 66 ? ? 47.54 80.66 91 14 VAL A 12 ? ? -38.91 106.64 92 14 VAL A 28 ? ? -33.71 110.56 93 14 VAL A 38 ? ? -70.11 -76.65 94 14 GLU A 61 ? ? -39.32 157.44 95 14 SER A 67 ? ? -164.75 -58.91 96 15 SER A 5 ? ? -174.57 78.00 97 15 VAL A 28 ? ? -34.88 107.48 98 15 VAL A 34 ? ? -38.79 112.96 99 15 VAL A 38 ? ? -88.57 -72.27 100 15 ASN A 48 ? ? 47.13 24.62 101 15 GLU A 61 ? ? -39.94 157.41 102 15 SER A 67 ? ? -172.36 110.47 103 16 SER A 3 ? ? 57.85 109.59 104 16 SER A 5 ? ? 49.22 85.61 105 16 ASP A 22 ? ? -149.64 20.79 106 16 VAL A 28 ? ? -36.54 102.08 107 16 VAL A 34 ? ? -39.74 117.04 108 16 VAL A 38 ? ? -82.61 -70.43 109 16 LEU A 47 ? ? -120.29 -76.76 110 16 LYS A 50 ? ? -90.34 -158.34 111 16 THR A 51 ? ? -171.78 149.19 112 16 SER A 66 ? ? -175.99 132.45 113 17 ASP A 21 ? ? -99.89 32.20 114 17 ASP A 22 ? ? -145.48 17.91 115 17 VAL A 28 ? ? 37.27 94.14 116 17 GLU A 33 ? ? -66.37 78.85 117 17 VAL A 34 ? ? -37.68 113.42 118 17 VAL A 38 ? ? -77.92 -72.99 119 17 ASN A 48 ? ? 47.91 24.09 120 17 PHE A 58 ? ? -143.15 39.08 121 17 SER A 66 ? ? 61.73 159.75 122 17 SER A 67 ? ? -126.32 -58.62 123 18 ASP A 22 ? ? -148.83 19.95 124 18 VAL A 28 ? ? -35.06 100.51 125 18 VAL A 34 ? ? -39.38 111.98 126 18 PHE A 58 ? ? -143.69 36.36 127 18 GLU A 61 ? ? -50.06 170.55 128 18 SER A 63 ? ? -168.47 112.40 129 18 SER A 66 ? ? 64.92 128.61 130 19 SER A 2 ? ? 60.42 101.24 131 19 SER A 3 ? ? -177.24 -57.02 132 19 SER A 5 ? ? -57.56 100.56 133 19 VAL A 28 ? ? -28.85 100.72 134 19 VAL A 34 ? ? -39.56 110.12 135 19 VAL A 38 ? ? -89.29 -71.72 136 19 GLU A 40 ? ? -39.36 142.12 137 19 GLU A 61 ? ? -46.74 159.95 138 19 SER A 67 ? ? 59.61 98.84 139 20 VAL A 28 ? ? -35.96 104.81 140 20 VAL A 34 ? ? -40.04 109.56 141 20 ASN A 48 ? ? 48.38 23.42 142 20 PHE A 58 ? ? -151.38 35.58 143 20 GLU A 61 ? ? -49.74 171.85 144 20 SER A 66 ? ? -153.71 -57.61 145 20 SER A 67 ? ? 63.09 98.14 #