data_1WI8 # _entry.id 1WI8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WI8 pdb_00001wi8 10.2210/pdb1wi8/pdb RCSB RCSB023607 ? ? WWPDB D_1000023607 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001000201.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WI8 _pdbx_database_status.recvd_initial_deposition_date 2004-05-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Suzuki, S.' 1 'Muto, Y.' 2 'Nagata, T.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Terada, T.' 6 'Shirouzu, M.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Solution structure of the RNA binding domain of eukaryotic initiation factor 4B' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Suzuki, S.' 1 ? primary 'Muto, Y.' 2 ? primary 'Nagata, T.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Terada, T.' 6 ? primary 'Shirouzu, M.' 7 ? primary 'Yokoyama, S.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Eukaryotic translation initiation factor 4B' _entity.formula_weight 11247.311 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation R164K _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name eIF-4B # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEES LGNKRIRVDVADQAQDKDSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEES LGNKRIRVDVADQAQDKDSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001000201.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 SER n 1 9 ARG n 1 10 LEU n 1 11 PRO n 1 12 LYS n 1 13 SER n 1 14 PRO n 1 15 PRO n 1 16 TYR n 1 17 THR n 1 18 ALA n 1 19 PHE n 1 20 LEU n 1 21 GLY n 1 22 ASN n 1 23 LEU n 1 24 PRO n 1 25 TYR n 1 26 ASP n 1 27 VAL n 1 28 THR n 1 29 GLU n 1 30 GLU n 1 31 SER n 1 32 ILE n 1 33 LYS n 1 34 GLU n 1 35 PHE n 1 36 PHE n 1 37 ARG n 1 38 GLY n 1 39 LEU n 1 40 ASN n 1 41 ILE n 1 42 SER n 1 43 ALA n 1 44 VAL n 1 45 ARG n 1 46 LEU n 1 47 PRO n 1 48 ARG n 1 49 GLU n 1 50 PRO n 1 51 SER n 1 52 ASN n 1 53 PRO n 1 54 GLU n 1 55 ARG n 1 56 LEU n 1 57 LYS n 1 58 GLY n 1 59 PHE n 1 60 GLY n 1 61 TYR n 1 62 ALA n 1 63 GLU n 1 64 PHE n 1 65 GLU n 1 66 ASP n 1 67 LEU n 1 68 ASP n 1 69 SER n 1 70 LEU n 1 71 LEU n 1 72 SER n 1 73 ALA n 1 74 LEU n 1 75 SER n 1 76 LEU n 1 77 ASN n 1 78 GLU n 1 79 GLU n 1 80 SER n 1 81 LEU n 1 82 GLY n 1 83 ASN n 1 84 LYS n 1 85 ARG n 1 86 ILE n 1 87 ARG n 1 88 VAL n 1 89 ASP n 1 90 VAL n 1 91 ALA n 1 92 ASP n 1 93 GLN n 1 94 ALA n 1 95 GLN n 1 96 ASP n 1 97 LYS n 1 98 ASP n 1 99 SER n 1 100 GLY n 1 101 PRO n 1 102 SER n 1 103 SER n 1 104 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'RIKEN cDNA adSE02039' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040301-18 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code IF4B_HUMAN _struct_ref.pdbx_db_accession P23588 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIR VDVADQAQDKD ; _struct_ref.pdbx_align_begin 88 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WI8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 98 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P23588 _struct_ref_seq.db_align_beg 88 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 178 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 88 _struct_ref_seq.pdbx_auth_seq_align_end 178 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WI8 GLY A 1 ? UNP P23588 ? ? 'cloning artifact' 81 1 1 1WI8 SER A 2 ? UNP P23588 ? ? 'cloning artifact' 82 2 1 1WI8 SER A 3 ? UNP P23588 ? ? 'cloning artifact' 83 3 1 1WI8 GLY A 4 ? UNP P23588 ? ? 'cloning artifact' 84 4 1 1WI8 SER A 5 ? UNP P23588 ? ? 'cloning artifact' 85 5 1 1WI8 SER A 6 ? UNP P23588 ? ? 'cloning artifact' 86 6 1 1WI8 GLY A 7 ? UNP P23588 ? ? 'cloning artifact' 87 7 1 1WI8 LYS A 84 ? UNP P23588 ARG 164 'engineered mutation' 164 8 1 1WI8 SER A 99 ? UNP P23588 ? ? 'cloning artifact' 179 9 1 1WI8 GLY A 100 ? UNP P23588 ? ? 'cloning artifact' 180 10 1 1WI8 PRO A 101 ? UNP P23588 ? ? 'cloning artifact' 181 11 1 1WI8 SER A 102 ? UNP P23588 ? ? 'cloning artifact' 182 12 1 1WI8 SER A 103 ? UNP P23588 ? ? 'cloning artifact' 183 13 1 1WI8 GLY A 104 ? UNP P23588 ? ? 'cloning artifact' 184 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.0mM 13C/15N-PROTEIN 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 800 # _pdbx_nmr_refine.entry_id 1WI8 _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1WI8 _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_ensemble.entry_id 1WI8 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WI8 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 3.5 collection Bruker 1 NMRPipe 2.3 processing 'Delaglio, F.' 2 NMRView 5.0.4 'data analysis' 'Johnson, B.A.' 3 KUJIRA 0.901 'data analysis' 'Kobayashi, N.' 4 Olivia 1.9.12 'data analysis' 'Yokochi, M.' 5 CYANA 2.0.17 'structure solution' 'Guentert, P.' 6 CYANA 2.0.17 refinement 'Guentert, P.' 7 # _exptl.entry_id 1WI8 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1WI8 _struct.title 'Solution structure of the RNA binding domain of eukaryotic initiation factor 4B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WI8 _struct_keywords.pdbx_keywords 'BIOSYNTHETIC PROTEIN' _struct_keywords.text ;RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, BIOSYNTHETIC PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 28 ? PHE A 36 ? THR A 108 PHE A 116 1 ? 9 HELX_P HELX_P2 2 ASP A 66 ? SER A 75 ? ASP A 146 SER A 155 1 ? 10 HELX_P HELX_P3 3 LEU A 76 ? GLU A 78 ? LEU A 156 GLU A 158 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 1 -0.07 2 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 2 -0.10 3 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 3 -0.08 4 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 4 -0.06 5 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 5 -0.10 6 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 6 -0.09 7 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 7 -0.05 8 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 8 -0.07 9 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 9 -0.13 10 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 10 -0.06 11 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 11 -0.02 12 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 12 -0.12 13 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 13 -0.01 14 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 14 -0.06 15 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 15 0.03 16 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 16 -0.03 17 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 17 -0.06 18 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 18 -0.03 19 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 19 -0.02 20 PRO 14 A . ? PRO 94 A PRO 15 A ? PRO 95 A 20 -0.09 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 41 ? ARG A 45 ? ILE A 121 ARG A 125 A 2 GLY A 60 ? PHE A 64 ? GLY A 140 PHE A 144 A 3 TYR A 16 ? GLY A 21 ? TYR A 96 GLY A 101 A 4 ARG A 87 ? VAL A 90 ? ARG A 167 VAL A 170 B 1 SER A 80 ? LEU A 81 ? SER A 160 LEU A 161 B 2 LYS A 84 ? ARG A 85 ? LYS A 164 ARG A 165 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 45 ? N ARG A 125 O TYR A 61 ? O TYR A 141 A 2 3 O GLY A 60 ? O GLY A 140 N LEU A 20 ? N LEU A 100 A 3 4 N PHE A 19 ? N PHE A 99 O ASP A 89 ? O ASP A 169 B 1 2 N LEU A 81 ? N LEU A 161 O LYS A 84 ? O LYS A 164 # _database_PDB_matrix.entry_id 1WI8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WI8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 81 81 GLY GLY A . n A 1 2 SER 2 82 82 SER SER A . n A 1 3 SER 3 83 83 SER SER A . n A 1 4 GLY 4 84 84 GLY GLY A . n A 1 5 SER 5 85 85 SER SER A . n A 1 6 SER 6 86 86 SER SER A . n A 1 7 GLY 7 87 87 GLY GLY A . n A 1 8 SER 8 88 88 SER SER A . n A 1 9 ARG 9 89 89 ARG ARG A . n A 1 10 LEU 10 90 90 LEU LEU A . n A 1 11 PRO 11 91 91 PRO PRO A . n A 1 12 LYS 12 92 92 LYS LYS A . n A 1 13 SER 13 93 93 SER SER A . n A 1 14 PRO 14 94 94 PRO PRO A . n A 1 15 PRO 15 95 95 PRO PRO A . n A 1 16 TYR 16 96 96 TYR TYR A . n A 1 17 THR 17 97 97 THR THR A . n A 1 18 ALA 18 98 98 ALA ALA A . n A 1 19 PHE 19 99 99 PHE PHE A . n A 1 20 LEU 20 100 100 LEU LEU A . n A 1 21 GLY 21 101 101 GLY GLY A . n A 1 22 ASN 22 102 102 ASN ASN A . n A 1 23 LEU 23 103 103 LEU LEU A . n A 1 24 PRO 24 104 104 PRO PRO A . n A 1 25 TYR 25 105 105 TYR TYR A . n A 1 26 ASP 26 106 106 ASP ASP A . n A 1 27 VAL 27 107 107 VAL VAL A . n A 1 28 THR 28 108 108 THR THR A . n A 1 29 GLU 29 109 109 GLU GLU A . n A 1 30 GLU 30 110 110 GLU GLU A . n A 1 31 SER 31 111 111 SER SER A . n A 1 32 ILE 32 112 112 ILE ILE A . n A 1 33 LYS 33 113 113 LYS LYS A . n A 1 34 GLU 34 114 114 GLU GLU A . n A 1 35 PHE 35 115 115 PHE PHE A . n A 1 36 PHE 36 116 116 PHE PHE A . n A 1 37 ARG 37 117 117 ARG ARG A . n A 1 38 GLY 38 118 118 GLY GLY A . n A 1 39 LEU 39 119 119 LEU LEU A . n A 1 40 ASN 40 120 120 ASN ASN A . n A 1 41 ILE 41 121 121 ILE ILE A . n A 1 42 SER 42 122 122 SER SER A . n A 1 43 ALA 43 123 123 ALA ALA A . n A 1 44 VAL 44 124 124 VAL VAL A . n A 1 45 ARG 45 125 125 ARG ARG A . n A 1 46 LEU 46 126 126 LEU LEU A . n A 1 47 PRO 47 127 127 PRO PRO A . n A 1 48 ARG 48 128 128 ARG ARG A . n A 1 49 GLU 49 129 129 GLU GLU A . n A 1 50 PRO 50 130 130 PRO PRO A . n A 1 51 SER 51 131 131 SER SER A . n A 1 52 ASN 52 132 132 ASN ASN A . n A 1 53 PRO 53 133 133 PRO PRO A . n A 1 54 GLU 54 134 134 GLU GLU A . n A 1 55 ARG 55 135 135 ARG ARG A . n A 1 56 LEU 56 136 136 LEU LEU A . n A 1 57 LYS 57 137 137 LYS LYS A . n A 1 58 GLY 58 138 138 GLY GLY A . n A 1 59 PHE 59 139 139 PHE PHE A . n A 1 60 GLY 60 140 140 GLY GLY A . n A 1 61 TYR 61 141 141 TYR TYR A . n A 1 62 ALA 62 142 142 ALA ALA A . n A 1 63 GLU 63 143 143 GLU GLU A . n A 1 64 PHE 64 144 144 PHE PHE A . n A 1 65 GLU 65 145 145 GLU GLU A . n A 1 66 ASP 66 146 146 ASP ASP A . n A 1 67 LEU 67 147 147 LEU LEU A . n A 1 68 ASP 68 148 148 ASP ASP A . n A 1 69 SER 69 149 149 SER SER A . n A 1 70 LEU 70 150 150 LEU LEU A . n A 1 71 LEU 71 151 151 LEU LEU A . n A 1 72 SER 72 152 152 SER SER A . n A 1 73 ALA 73 153 153 ALA ALA A . n A 1 74 LEU 74 154 154 LEU LEU A . n A 1 75 SER 75 155 155 SER SER A . n A 1 76 LEU 76 156 156 LEU LEU A . n A 1 77 ASN 77 157 157 ASN ASN A . n A 1 78 GLU 78 158 158 GLU GLU A . n A 1 79 GLU 79 159 159 GLU GLU A . n A 1 80 SER 80 160 160 SER SER A . n A 1 81 LEU 81 161 161 LEU LEU A . n A 1 82 GLY 82 162 162 GLY GLY A . n A 1 83 ASN 83 163 163 ASN ASN A . n A 1 84 LYS 84 164 164 LYS LYS A . n A 1 85 ARG 85 165 165 ARG ARG A . n A 1 86 ILE 86 166 166 ILE ILE A . n A 1 87 ARG 87 167 167 ARG ARG A . n A 1 88 VAL 88 168 168 VAL VAL A . n A 1 89 ASP 89 169 169 ASP ASP A . n A 1 90 VAL 90 170 170 VAL VAL A . n A 1 91 ALA 91 171 171 ALA ALA A . n A 1 92 ASP 92 172 172 ASP ASP A . n A 1 93 GLN 93 173 173 GLN GLN A . n A 1 94 ALA 94 174 174 ALA ALA A . n A 1 95 GLN 95 175 175 GLN GLN A . n A 1 96 ASP 96 176 176 ASP ASP A . n A 1 97 LYS 97 177 177 LYS LYS A . n A 1 98 ASP 98 178 178 ASP ASP A . n A 1 99 SER 99 179 179 SER SER A . n A 1 100 GLY 100 180 180 GLY GLY A . n A 1 101 PRO 101 181 181 PRO PRO A . n A 1 102 SER 102 182 182 SER SER A . n A 1 103 SER 103 183 183 SER SER A . n A 1 104 GLY 104 184 184 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 91 ? ? -69.74 95.30 2 1 PRO A 104 ? ? -69.72 -179.39 3 1 VAL A 107 ? ? -52.38 107.97 4 1 SER A 131 ? ? -120.38 -50.45 5 1 GLU A 159 ? ? -37.06 120.19 6 1 GLN A 173 ? ? -67.43 82.64 7 1 PRO A 181 ? ? -69.78 -177.26 8 1 SER A 182 ? ? -174.96 129.89 9 2 SER A 88 ? ? -171.02 117.54 10 2 PRO A 130 ? ? -69.73 0.97 11 2 PRO A 133 ? ? -69.80 2.65 12 3 SER A 179 ? ? 34.40 45.17 13 4 SER A 183 ? ? -124.55 -60.12 14 5 ASP A 106 ? ? -98.67 32.52 15 5 SER A 183 ? ? -48.77 162.02 16 6 SER A 82 ? ? -173.30 141.98 17 6 LEU A 90 ? ? -36.53 154.96 18 6 PRO A 104 ? ? -69.77 -165.04 19 6 GLN A 175 ? ? -43.76 165.73 20 6 PRO A 181 ? ? -69.78 -177.37 21 7 SER A 82 ? ? 37.99 42.71 22 7 LYS A 92 ? ? -98.96 35.36 23 7 GLN A 175 ? ? 35.07 35.07 24 7 ASP A 176 ? ? -89.95 43.62 25 8 VAL A 107 ? ? -33.24 122.96 26 8 GLU A 134 ? ? -83.51 35.81 27 8 ASP A 176 ? ? -171.02 135.87 28 9 SER A 82 ? ? -174.64 114.87 29 9 ASP A 106 ? ? -88.53 31.53 30 9 GLU A 129 ? ? -39.11 138.98 31 9 PRO A 133 ? ? -69.84 0.92 32 9 GLU A 159 ? ? -36.62 124.71 33 9 PRO A 181 ? ? -69.83 -174.90 34 10 PRO A 91 ? ? -69.75 94.34 35 10 ARG A 117 ? ? -37.07 146.71 36 10 GLU A 134 ? ? -90.25 -64.42 37 11 SER A 82 ? ? -171.87 143.66 38 11 PRO A 91 ? ? -69.77 99.85 39 11 ARG A 117 ? ? -34.94 145.05 40 11 GLU A 134 ? ? -90.75 36.92 41 12 SER A 82 ? ? -171.26 130.13 42 12 PRO A 95 ? ? -69.72 -179.86 43 12 ASN A 102 ? ? 38.65 54.68 44 12 ASP A 106 ? ? -87.28 32.31 45 12 ARG A 117 ? ? -39.07 146.88 46 12 PRO A 181 ? ? -69.76 -176.71 47 13 SER A 86 ? ? -171.31 127.55 48 13 LYS A 92 ? ? -83.52 37.58 49 13 LYS A 177 ? ? -46.43 165.42 50 13 PRO A 181 ? ? -69.80 93.81 51 14 GLU A 129 ? ? -38.14 142.58 52 14 LEU A 136 ? ? -59.40 173.28 53 15 SER A 88 ? ? -104.52 48.19 54 15 PRO A 95 ? ? -69.85 -179.81 55 15 ASP A 178 ? ? -171.64 136.42 56 15 PRO A 181 ? ? -69.77 -178.06 57 15 SER A 182 ? ? -174.92 145.74 58 16 ASN A 102 ? ? 39.46 53.21 59 16 ASP A 106 ? ? -96.84 33.90 60 16 ARG A 117 ? ? -37.95 142.07 61 16 ARG A 135 ? ? -58.06 179.23 62 16 PRO A 181 ? ? -69.80 -173.92 63 17 ASP A 106 ? ? -93.81 32.24 64 17 GLU A 129 ? ? -38.08 143.87 65 17 ALA A 171 ? ? -82.38 43.19 66 18 GLN A 173 ? ? -127.50 -54.89 67 18 GLN A 175 ? ? -103.80 42.20 68 19 PRO A 91 ? ? -69.85 97.24 69 19 PRO A 95 ? ? -69.78 -178.33 70 19 VAL A 107 ? ? -33.87 129.78 71 19 ARG A 117 ? ? -39.80 145.18 72 19 PRO A 133 ? ? -69.75 2.69 73 20 LYS A 92 ? ? -80.98 42.76 74 20 SER A 179 ? ? -165.23 106.56 #