HEADER DNA BINDING PROTEIN 28-MAY-04 1WID TITLE SOLUTION STRUCTURE OF THE B3 DNA-BINDING DOMAIN OF RAV1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN RAV1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: B3 DNA-BINDING DOMAIN; COMPND 5 SYNONYM: TRANSCRIPTION FACTOR RAV1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: RAV1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PCR2.1; SOURCE 8 OTHER_DETAILS: CELL-FREE SYNTHESIS KEYWDS DNA-BINDING DOMAIN, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.YAMASAKI,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 02-MAR-22 1WID 1 REMARK SEQADV REVDAT 3 24-FEB-09 1WID 1 VERSN REVDAT 2 21-DEC-04 1WID 1 JRNL REVDAT 1 28-NOV-04 1WID 0 JRNL AUTH K.YAMASAKI,T.KIGAWA,M.INOUE,M.TATENO,T.YAMASAKI,T.YABUKI, JRNL AUTH 2 M.AOKI,E.SEKI,T.MATSUDA,Y.TOMO,N.HAYAMI,T.TERADA,M.SHIROUZU, JRNL AUTH 3 T.OSANAI,A.TANAKA,M.SEKI,K.SHINOZAKI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE B3 DNA BINDING DOMAIN OF THE JRNL TITL 2 ARABIDOPSIS COLD-RESPONSIVE TRANSCRIPTION FACTOR RAV1 JRNL REF PLANT CELL V. 16 3448 2004 JRNL REFN ISSN 1040-4651 JRNL PMID 15548737 JRNL DOI 10.1105/TPC.104.026112 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 2000, CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WID COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023612. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 500MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM RAV1-B3; 20MM KPI; 500MM REMARK 210 KCL; 95% H2O; 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; DQF-COSY; HMQC-J REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 15 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 SER A 177 REMARK 465 GLY A 178 REMARK 465 SER A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 SER A 299 REMARK 465 GLY A 300 REMARK 465 PRO A 301 REMARK 465 SER A 302 REMARK 465 SER A 303 REMARK 465 GLY A 304 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 215 -168.73 -75.50 REMARK 500 1 SER A 218 34.65 -98.45 REMARK 500 1 SER A 219 -47.04 -144.42 REMARK 500 1 SER A 222 -70.72 -160.14 REMARK 500 1 VAL A 223 -43.75 -139.42 REMARK 500 1 LYS A 224 -178.05 -56.44 REMARK 500 1 ASN A 234 37.72 -94.48 REMARK 500 1 ASN A 246 90.01 43.69 REMARK 500 1 SER A 247 -63.36 70.82 REMARK 500 1 SER A 248 -57.55 170.40 REMARK 500 1 LYS A 255 128.25 63.52 REMARK 500 2 SER A 183 106.95 -161.94 REMARK 500 2 LEU A 187 -63.34 -91.04 REMARK 500 2 ASN A 201 124.18 63.71 REMARK 500 2 ARG A 202 122.56 -178.55 REMARK 500 2 HIS A 213 -71.85 -106.48 REMARK 500 2 PRO A 215 -167.82 -69.17 REMARK 500 2 PRO A 217 162.37 -49.43 REMARK 500 2 VAL A 221 -46.00 -157.96 REMARK 500 2 SER A 222 -49.01 -145.61 REMARK 500 2 ASN A 234 36.04 -93.60 REMARK 500 2 LYS A 255 118.86 61.13 REMARK 500 2 GLN A 280 66.75 60.35 REMARK 500 2 ASP A 281 160.60 59.90 REMARK 500 2 SER A 292 -48.04 -147.85 REMARK 500 3 SER A 183 -39.25 -178.10 REMARK 500 3 PRO A 206 174.48 -53.20 REMARK 500 3 ASN A 220 44.72 -93.31 REMARK 500 3 ASN A 234 33.23 -94.57 REMARK 500 3 ASN A 246 50.66 70.83 REMARK 500 3 SER A 247 -71.04 67.69 REMARK 500 3 SER A 248 28.22 -165.84 REMARK 500 3 GLN A 249 -65.13 -90.44 REMARK 500 3 LYS A 255 120.96 61.94 REMARK 500 3 GLN A 282 51.48 -90.13 REMARK 500 4 PRO A 194 81.47 -58.09 REMARK 500 4 SER A 195 -35.86 173.75 REMARK 500 4 PRO A 215 -159.31 -58.18 REMARK 500 4 SER A 219 139.28 64.48 REMARK 500 4 SER A 222 -49.59 -135.72 REMARK 500 4 ASN A 234 34.79 -94.30 REMARK 500 4 ASN A 246 92.20 45.09 REMARK 500 4 SER A 248 -58.98 70.98 REMARK 500 4 LYS A 255 97.04 57.64 REMARK 500 4 SER A 275 -169.54 -117.91 REMARK 500 4 SER A 290 101.86 -160.07 REMARK 500 4 SER A 292 -50.16 -147.22 REMARK 500 5 SER A 183 112.58 61.14 REMARK 500 5 ASN A 201 84.47 61.64 REMARK 500 5 PRO A 206 172.67 -52.78 REMARK 500 REMARK 500 THIS ENTRY HAS 233 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ATR001006482.1 RELATED DB: TARGETDB DBREF 1WID A 182 298 UNP Q9ZWM9 RAV1_ARATH 182 298 SEQADV 1WID GLY A 175 UNP Q9ZWM9 CLONING ARTIFACT SEQADV 1WID SER A 176 UNP Q9ZWM9 CLONING ARTIFACT SEQADV 1WID SER A 177 UNP Q9ZWM9 CLONING ARTIFACT SEQADV 1WID GLY A 178 UNP Q9ZWM9 CLONING ARTIFACT SEQADV 1WID SER A 179 UNP Q9ZWM9 CLONING ARTIFACT SEQADV 1WID SER A 180 UNP Q9ZWM9 CLONING ARTIFACT SEQADV 1WID GLY A 181 UNP Q9ZWM9 CLONING ARTIFACT SEQADV 1WID SER A 299 UNP Q9ZWM9 CLONING ARTIFACT SEQADV 1WID GLY A 300 UNP Q9ZWM9 CLONING ARTIFACT SEQADV 1WID PRO A 301 UNP Q9ZWM9 CLONING ARTIFACT SEQADV 1WID SER A 302 UNP Q9ZWM9 CLONING ARTIFACT SEQADV 1WID SER A 303 UNP Q9ZWM9 CLONING ARTIFACT SEQADV 1WID GLY A 304 UNP Q9ZWM9 CLONING ARTIFACT SEQRES 1 A 130 GLY SER SER GLY SER SER GLY ARG SER ALA GLU ALA LEU SEQRES 2 A 130 PHE GLU LYS ALA VAL THR PRO SER ASP VAL GLY LYS LEU SEQRES 3 A 130 ASN ARG LEU VAL ILE PRO LYS HIS HIS ALA GLU LYS HIS SEQRES 4 A 130 PHE PRO LEU PRO SER SER ASN VAL SER VAL LYS GLY VAL SEQRES 5 A 130 LEU LEU ASN PHE GLU ASP VAL ASN GLY LYS VAL TRP ARG SEQRES 6 A 130 PHE ARG TYR SER TYR TRP ASN SER SER GLN SER TYR VAL SEQRES 7 A 130 LEU THR LYS GLY TRP SER ARG PHE VAL LYS GLU LYS ASN SEQRES 8 A 130 LEU ARG ALA GLY ASP VAL VAL SER PHE SER ARG SER ASN SEQRES 9 A 130 GLY GLN ASP GLN GLN LEU TYR ILE GLY TRP LYS SER ARG SEQRES 10 A 130 SER GLY SER ASP LEU ASP ALA SER GLY PRO SER SER GLY HELIX 1 1 PRO A 206 GLU A 211 1 6 HELIX 2 2 GLY A 256 LYS A 264 1 9 SHEET 1 A 7 GLU A 185 ALA A 191 0 SHEET 2 A 7 VAL A 271 ARG A 276 -1 O VAL A 272 N LYS A 190 SHEET 3 A 7 LEU A 284 LYS A 289 -1 O GLY A 287 N SER A 273 SHEET 4 A 7 VAL A 226 ASP A 232 1 N ASN A 229 O LEU A 284 SHEET 5 A 7 LYS A 236 TRP A 245 -1 O TYR A 242 N VAL A 226 SHEET 6 A 7 SER A 250 THR A 254 -1 O SER A 250 N TRP A 245 SHEET 7 A 7 LEU A 203 ILE A 205 -1 N ILE A 205 O TYR A 251 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1