HEADER DNA BINDING PROTEIN 28-MAY-04 1WIZ TITLE SOLUTION STRUCTURE OF THE FIRST CUT DOMAIN OF KIAA1034 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CUT DOMAIN; COMPND 5 SYNONYM: KIAA1034 PROTEIN, SATB2 PROTEIN, SPECIAL AT-RICH SEQUENCE- COMPND 6 BINDING PROTEIN 2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA FH00753; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040114-63; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS HELIX BUNDLE, SATB2, KIAA1034 PROTEIN, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.INOUE,S.NAMEKI,F.HAYASHI,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WIZ 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WIZ 1 VERSN REVDAT 1 28-NOV-04 1WIZ 0 JRNL AUTH K.INOUE,S.NAMEKI,F.HAYASHI,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST CUT DOMAIN OF KIAA1034 JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WIZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023629. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.20MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 2MM REMARK 210 D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.8992, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 86 H ILE A 90 1.51 REMARK 500 O GLN A 49 H SER A 53 1.52 REMARK 500 O GLN A 67 H VAL A 71 1.56 REMARK 500 O GLN A 25 H GLU A 29 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 168.68 67.82 REMARK 500 1 SER A 3 145.00 69.14 REMARK 500 1 SER A 5 130.57 -172.77 REMARK 500 1 LYS A 8 95.79 61.91 REMARK 500 1 PRO A 9 -169.01 -75.06 REMARK 500 1 THR A 12 99.83 -164.39 REMARK 500 1 SER A 15 79.57 39.71 REMARK 500 1 GLN A 37 -30.69 -39.84 REMARK 500 1 PHE A 45 24.57 -148.68 REMARK 500 1 THR A 48 -157.91 -107.04 REMARK 500 1 GLU A 60 104.57 -46.80 REMARK 500 1 LEU A 82 163.90 -47.68 REMARK 500 1 SER A 96 77.95 53.96 REMARK 500 1 SER A 99 74.31 43.43 REMARK 500 1 SER A 100 145.84 -39.84 REMARK 500 2 SER A 2 144.94 68.19 REMARK 500 2 SER A 3 134.51 -171.19 REMARK 500 2 PRO A 9 -167.58 -75.05 REMARK 500 2 GLU A 10 91.85 179.73 REMARK 500 2 SER A 15 90.67 41.89 REMARK 500 2 PHE A 45 24.98 -148.40 REMARK 500 2 THR A 48 -157.93 -101.13 REMARK 500 2 GLU A 60 104.87 -47.05 REMARK 500 2 ALA A 65 153.94 -40.22 REMARK 500 2 LEU A 82 164.71 -45.66 REMARK 500 2 SER A 96 111.40 60.05 REMARK 500 3 SER A 3 167.74 175.84 REMARK 500 3 SER A 5 145.91 -170.13 REMARK 500 3 SER A 6 160.00 176.06 REMARK 500 3 LYS A 8 113.47 -172.85 REMARK 500 3 PRO A 11 -165.49 -74.97 REMARK 500 3 ASN A 13 152.09 175.03 REMARK 500 3 SER A 14 75.37 166.87 REMARK 500 3 SER A 15 77.17 39.85 REMARK 500 3 PHE A 45 26.57 -149.73 REMARK 500 3 THR A 48 -145.23 -107.99 REMARK 500 3 GLU A 60 104.90 -46.73 REMARK 500 3 LEU A 82 162.53 -48.65 REMARK 500 4 SER A 2 -60.93 -172.51 REMARK 500 4 SER A 3 166.07 179.41 REMARK 500 4 SER A 5 86.25 61.81 REMARK 500 4 SER A 6 127.41 179.29 REMARK 500 4 SER A 14 -166.85 -108.67 REMARK 500 4 VAL A 16 138.58 62.28 REMARK 500 4 ALA A 41 -33.63 -39.32 REMARK 500 4 PHE A 45 25.23 -149.55 REMARK 500 4 THR A 48 -166.28 -101.15 REMARK 500 4 GLU A 60 104.89 -46.85 REMARK 500 4 ALA A 65 140.08 -39.65 REMARK 500 4 SER A 96 97.23 -54.67 REMARK 500 REMARK 500 THIS ENTRY HAS 239 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001010.2 RELATED DB: TARGETDB DBREF 1WIZ A 8 95 UNP Q9UPW6 SATB2_HUMAN 350 437 SEQADV 1WIZ GLY A 1 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 2 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 3 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ GLY A 4 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 5 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 6 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ GLY A 7 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 96 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ GLY A 97 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ PRO A 98 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 99 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ SER A 100 UNP Q9UPW6 CLONING ARTIFACT SEQADV 1WIZ GLY A 101 UNP Q9UPW6 CLONING ARTIFACT SEQRES 1 A 101 GLY SER SER GLY SER SER GLY LYS PRO GLU PRO THR ASN SEQRES 2 A 101 SER SER VAL GLU VAL SER PRO ASP ILE TYR GLN GLN VAL SEQRES 3 A 101 ARG ASP GLU LEU LYS ARG ALA SER VAL SER GLN ALA VAL SEQRES 4 A 101 PHE ALA ARG VAL ALA PHE ASN ARG THR GLN GLY LEU LEU SEQRES 5 A 101 SER GLU ILE LEU ARG LYS GLU GLU ASP PRO ARG THR ALA SEQRES 6 A 101 SER GLN SER LEU LEU VAL ASN LEU ARG ALA MET GLN ASN SEQRES 7 A 101 PHE LEU ASN LEU PRO GLU VAL GLU ARG ASP ARG ILE TYR SEQRES 8 A 101 GLN ASP GLU ARG SER GLY PRO SER SER GLY HELIX 1 1 ASP A 21 SER A 34 1 14 HELIX 2 2 SER A 36 ASN A 46 1 11 HELIX 3 3 THR A 48 LYS A 58 1 11 HELIX 4 4 SER A 66 LEU A 80 1 15 HELIX 5 5 PRO A 83 SER A 96 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1