data_1WNZ # _entry.id 1WNZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WNZ pdb_00001wnz 10.2210/pdb1wnz/pdb RCSB RCSB023797 ? ? WWPDB D_1000023797 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-10-25 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WNZ _pdbx_database_status.recvd_initial_deposition_date 2004-08-11 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1WNY 'the same protein without ligand' unspecified TargetDB ttk003000883.5 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fukunaga, R.' 1 'Yokoyama, S.' 2 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 3 # _citation.id primary _citation.title 'Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 359 _citation.page_first 901 _citation.page_last 912 _citation.year 2006 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16697013 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2006.04.025 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fukunaga, R.' 1 ? primary 'Yokoyama, S.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'isoleucyl-trna synthetase' 20629.619 1 6.1.1.5 ? 'CP1 domain' ? 2 non-polymer syn "2'-(L-VALYL)AMINO-2'-DEOXYADENOSINE" 365.388 1 ? ? ? ? 3 water nat water 18.015 183 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTF PGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGLYF REANRAILRDLRGRGLLFKEESYLHS ; _entity_poly.pdbx_seq_one_letter_code_can ;MQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTF PGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGLYF REANRAILRDLRGRGLLFKEESYLHS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003000883.5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "2'-(L-VALYL)AMINO-2'-DEOXYADENOSINE" 2VA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ASP n 1 4 PRO n 1 5 SER n 1 6 VAL n 1 7 TYR n 1 8 VAL n 1 9 ARG n 1 10 PHE n 1 11 PRO n 1 12 LEU n 1 13 LYS n 1 14 GLU n 1 15 PRO n 1 16 LYS n 1 17 LYS n 1 18 LEU n 1 19 GLY n 1 20 LEU n 1 21 GLU n 1 22 LYS n 1 23 ALA n 1 24 SER n 1 25 LEU n 1 26 LEU n 1 27 ILE n 1 28 TRP n 1 29 THR n 1 30 THR n 1 31 THR n 1 32 PRO n 1 33 TRP n 1 34 THR n 1 35 LEU n 1 36 PRO n 1 37 GLY n 1 38 ASN n 1 39 VAL n 1 40 ALA n 1 41 ALA n 1 42 ALA n 1 43 VAL n 1 44 HIS n 1 45 PRO n 1 46 GLU n 1 47 TYR n 1 48 THR n 1 49 TYR n 1 50 ALA n 1 51 ALA n 1 52 PHE n 1 53 GLN n 1 54 VAL n 1 55 GLY n 1 56 ASP n 1 57 GLU n 1 58 ALA n 1 59 LEU n 1 60 ILE n 1 61 LEU n 1 62 GLU n 1 63 GLU n 1 64 GLY n 1 65 LEU n 1 66 GLY n 1 67 ARG n 1 68 LYS n 1 69 LEU n 1 70 LEU n 1 71 GLY n 1 72 GLU n 1 73 GLY n 1 74 THR n 1 75 PRO n 1 76 VAL n 1 77 LEU n 1 78 LYS n 1 79 THR n 1 80 PHE n 1 81 PRO n 1 82 GLY n 1 83 LYS n 1 84 ALA n 1 85 LEU n 1 86 GLU n 1 87 GLY n 1 88 LEU n 1 89 PRO n 1 90 TYR n 1 91 THR n 1 92 PRO n 1 93 PRO n 1 94 TYR n 1 95 PRO n 1 96 GLN n 1 97 ALA n 1 98 LEU n 1 99 GLU n 1 100 LYS n 1 101 GLY n 1 102 TYR n 1 103 PHE n 1 104 VAL n 1 105 VAL n 1 106 LEU n 1 107 ALA n 1 108 ASP n 1 109 TYR n 1 110 VAL n 1 111 SER n 1 112 GLN n 1 113 GLU n 1 114 ASP n 1 115 GLY n 1 116 THR n 1 117 GLY n 1 118 ILE n 1 119 VAL n 1 120 HIS n 1 121 GLN n 1 122 ALA n 1 123 PRO n 1 124 ALA n 1 125 PHE n 1 126 GLY n 1 127 ALA n 1 128 GLU n 1 129 ASP n 1 130 LEU n 1 131 GLU n 1 132 THR n 1 133 ALA n 1 134 ARG n 1 135 VAL n 1 136 TYR n 1 137 GLY n 1 138 LEU n 1 139 PRO n 1 140 LEU n 1 141 LEU n 1 142 LYS n 1 143 THR n 1 144 VAL n 1 145 ASP n 1 146 GLU n 1 147 GLU n 1 148 GLY n 1 149 LYS n 1 150 LEU n 1 151 LEU n 1 152 VAL n 1 153 GLU n 1 154 PRO n 1 155 PHE n 1 156 LYS n 1 157 GLY n 1 158 LEU n 1 159 TYR n 1 160 PHE n 1 161 ARG n 1 162 GLU n 1 163 ALA n 1 164 ASN n 1 165 ARG n 1 166 ALA n 1 167 ILE n 1 168 LEU n 1 169 ARG n 1 170 ASP n 1 171 LEU n 1 172 ARG n 1 173 GLY n 1 174 ARG n 1 175 GLY n 1 176 LEU n 1 177 LEU n 1 178 PHE n 1 179 LYS n 1 180 GLU n 1 181 GLU n 1 182 SER n 1 183 TYR n 1 184 LEU n 1 185 HIS n 1 186 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET26b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2VA 'L-peptide linking' n "2'-(L-VALYL)AMINO-2'-DEOXYADENOSINE" ? 'C15 H23 N7 O4' 365.388 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 200 ? ? ? A . n A 1 2 GLN 2 201 ? ? ? A . n A 1 3 ASP 3 202 202 ASP ASP A . n A 1 4 PRO 4 203 203 PRO PRO A . n A 1 5 SER 5 204 204 SER SER A . n A 1 6 VAL 6 205 205 VAL VAL A . n A 1 7 TYR 7 206 206 TYR TYR A . n A 1 8 VAL 8 207 207 VAL VAL A . n A 1 9 ARG 9 208 208 ARG ARG A . n A 1 10 PHE 10 209 209 PHE PHE A . n A 1 11 PRO 11 210 210 PRO PRO A . n A 1 12 LEU 12 211 211 LEU LEU A . n A 1 13 LYS 13 212 212 LYS LYS A . n A 1 14 GLU 14 213 213 GLU GLU A . n A 1 15 PRO 15 214 214 PRO PRO A . n A 1 16 LYS 16 215 215 LYS LYS A . n A 1 17 LYS 17 216 216 LYS LYS A . n A 1 18 LEU 18 217 217 LEU LEU A . n A 1 19 GLY 19 218 218 GLY GLY A . n A 1 20 LEU 20 219 219 LEU LEU A . n A 1 21 GLU 21 220 220 GLU GLU A . n A 1 22 LYS 22 221 221 LYS LYS A . n A 1 23 ALA 23 222 222 ALA ALA A . n A 1 24 SER 24 223 223 SER SER A . n A 1 25 LEU 25 224 224 LEU LEU A . n A 1 26 LEU 26 225 225 LEU LEU A . n A 1 27 ILE 27 226 226 ILE ILE A . n A 1 28 TRP 28 227 227 TRP TRP A . n A 1 29 THR 29 228 228 THR THR A . n A 1 30 THR 30 229 229 THR THR A . n A 1 31 THR 31 230 230 THR THR A . n A 1 32 PRO 32 231 231 PRO PRO A . n A 1 33 TRP 33 232 232 TRP TRP A . n A 1 34 THR 34 233 233 THR THR A . n A 1 35 LEU 35 234 234 LEU LEU A . n A 1 36 PRO 36 235 235 PRO PRO A . n A 1 37 GLY 37 236 236 GLY GLY A . n A 1 38 ASN 38 237 237 ASN ASN A . n A 1 39 VAL 39 238 238 VAL VAL A . n A 1 40 ALA 40 239 239 ALA ALA A . n A 1 41 ALA 41 240 240 ALA ALA A . n A 1 42 ALA 42 241 241 ALA ALA A . n A 1 43 VAL 43 242 242 VAL VAL A . n A 1 44 HIS 44 243 243 HIS HIS A . n A 1 45 PRO 45 244 244 PRO PRO A . n A 1 46 GLU 46 245 245 GLU GLU A . n A 1 47 TYR 47 246 246 TYR TYR A . n A 1 48 THR 48 247 247 THR THR A . n A 1 49 TYR 49 248 248 TYR TYR A . n A 1 50 ALA 50 249 249 ALA ALA A . n A 1 51 ALA 51 250 250 ALA ALA A . n A 1 52 PHE 52 251 251 PHE PHE A . n A 1 53 GLN 53 252 252 GLN GLN A . n A 1 54 VAL 54 253 253 VAL VAL A . n A 1 55 GLY 55 254 254 GLY GLY A . n A 1 56 ASP 56 255 255 ASP ASP A . n A 1 57 GLU 57 256 256 GLU GLU A . n A 1 58 ALA 58 257 257 ALA ALA A . n A 1 59 LEU 59 258 258 LEU LEU A . n A 1 60 ILE 60 259 259 ILE ILE A . n A 1 61 LEU 61 260 260 LEU LEU A . n A 1 62 GLU 62 261 261 GLU GLU A . n A 1 63 GLU 63 262 262 GLU GLU A . n A 1 64 GLY 64 263 263 GLY GLY A . n A 1 65 LEU 65 264 264 LEU LEU A . n A 1 66 GLY 66 265 265 GLY GLY A . n A 1 67 ARG 67 266 266 ARG ARG A . n A 1 68 LYS 68 267 267 LYS LYS A . n A 1 69 LEU 69 268 268 LEU LEU A . n A 1 70 LEU 70 269 269 LEU LEU A . n A 1 71 GLY 71 270 270 GLY GLY A . n A 1 72 GLU 72 271 271 GLU GLU A . n A 1 73 GLY 73 272 272 GLY GLY A . n A 1 74 THR 74 273 273 THR THR A . n A 1 75 PRO 75 274 274 PRO PRO A . n A 1 76 VAL 76 275 275 VAL VAL A . n A 1 77 LEU 77 276 276 LEU LEU A . n A 1 78 LYS 78 277 277 LYS LYS A . n A 1 79 THR 79 278 278 THR THR A . n A 1 80 PHE 80 279 279 PHE PHE A . n A 1 81 PRO 81 280 280 PRO PRO A . n A 1 82 GLY 82 281 281 GLY GLY A . n A 1 83 LYS 83 282 282 LYS LYS A . n A 1 84 ALA 84 283 283 ALA ALA A . n A 1 85 LEU 85 284 284 LEU LEU A . n A 1 86 GLU 86 285 285 GLU GLU A . n A 1 87 GLY 87 286 286 GLY GLY A . n A 1 88 LEU 88 287 287 LEU LEU A . n A 1 89 PRO 89 288 288 PRO PRO A . n A 1 90 TYR 90 289 289 TYR TYR A . n A 1 91 THR 91 290 290 THR THR A . n A 1 92 PRO 92 291 291 PRO PRO A . n A 1 93 PRO 93 292 292 PRO PRO A . n A 1 94 TYR 94 293 293 TYR TYR A . n A 1 95 PRO 95 294 294 PRO PRO A . n A 1 96 GLN 96 295 295 GLN GLN A . n A 1 97 ALA 97 296 296 ALA ALA A . n A 1 98 LEU 98 297 297 LEU LEU A . n A 1 99 GLU 99 298 298 GLU GLU A . n A 1 100 LYS 100 299 299 LYS LYS A . n A 1 101 GLY 101 300 300 GLY GLY A . n A 1 102 TYR 102 301 301 TYR TYR A . n A 1 103 PHE 103 302 302 PHE PHE A . n A 1 104 VAL 104 303 303 VAL VAL A . n A 1 105 VAL 105 304 304 VAL VAL A . n A 1 106 LEU 106 305 305 LEU LEU A . n A 1 107 ALA 107 306 306 ALA ALA A . n A 1 108 ASP 108 307 307 ASP ASP A . n A 1 109 TYR 109 308 308 TYR TYR A . n A 1 110 VAL 110 309 309 VAL VAL A . n A 1 111 SER 111 310 310 SER SER A . n A 1 112 GLN 112 311 311 GLN GLN A . n A 1 113 GLU 113 312 312 GLU GLU A . n A 1 114 ASP 114 313 313 ASP ASP A . n A 1 115 GLY 115 314 314 GLY GLY A . n A 1 116 THR 116 315 315 THR THR A . n A 1 117 GLY 117 316 316 GLY GLY A . n A 1 118 ILE 118 317 317 ILE ILE A . n A 1 119 VAL 119 318 318 VAL VAL A . n A 1 120 HIS 120 319 319 HIS HIS A . n A 1 121 GLN 121 320 320 GLN GLN A . n A 1 122 ALA 122 321 321 ALA ALA A . n A 1 123 PRO 123 322 322 PRO PRO A . n A 1 124 ALA 124 323 323 ALA ALA A . n A 1 125 PHE 125 324 324 PHE PHE A . n A 1 126 GLY 126 325 325 GLY GLY A . n A 1 127 ALA 127 326 326 ALA ALA A . n A 1 128 GLU 128 327 327 GLU GLU A . n A 1 129 ASP 129 328 328 ASP ASP A . n A 1 130 LEU 130 329 329 LEU LEU A . n A 1 131 GLU 131 330 330 GLU GLU A . n A 1 132 THR 132 331 331 THR THR A . n A 1 133 ALA 133 332 332 ALA ALA A . n A 1 134 ARG 134 333 333 ARG ARG A . n A 1 135 VAL 135 334 334 VAL VAL A . n A 1 136 TYR 136 335 335 TYR TYR A . n A 1 137 GLY 137 336 336 GLY GLY A . n A 1 138 LEU 138 337 337 LEU LEU A . n A 1 139 PRO 139 338 338 PRO PRO A . n A 1 140 LEU 140 339 339 LEU LEU A . n A 1 141 LEU 141 340 340 LEU LEU A . n A 1 142 LYS 142 341 341 LYS LYS A . n A 1 143 THR 143 342 342 THR THR A . n A 1 144 VAL 144 343 343 VAL VAL A . n A 1 145 ASP 145 344 344 ASP ASP A . n A 1 146 GLU 146 345 345 GLU GLU A . n A 1 147 GLU 147 346 346 GLU GLU A . n A 1 148 GLY 148 347 347 GLY GLY A . n A 1 149 LYS 149 348 348 LYS LYS A . n A 1 150 LEU 150 349 349 LEU LEU A . n A 1 151 LEU 151 350 350 LEU LEU A . n A 1 152 VAL 152 351 351 VAL VAL A . n A 1 153 GLU 153 352 352 GLU GLU A . n A 1 154 PRO 154 353 353 PRO PRO A . n A 1 155 PHE 155 354 354 PHE PHE A . n A 1 156 LYS 156 355 355 LYS LYS A . n A 1 157 GLY 157 356 356 GLY GLY A . n A 1 158 LEU 158 357 357 LEU LEU A . n A 1 159 TYR 159 358 358 TYR TYR A . n A 1 160 PHE 160 359 359 PHE PHE A . n A 1 161 ARG 161 360 360 ARG ARG A . n A 1 162 GLU 162 361 361 GLU GLU A . n A 1 163 ALA 163 362 362 ALA ALA A . n A 1 164 ASN 164 363 363 ASN ASN A . n A 1 165 ARG 165 364 364 ARG ARG A . n A 1 166 ALA 166 365 365 ALA ALA A . n A 1 167 ILE 167 366 366 ILE ILE A . n A 1 168 LEU 168 367 367 LEU LEU A . n A 1 169 ARG 169 368 368 ARG ARG A . n A 1 170 ASP 170 369 369 ASP ASP A . n A 1 171 LEU 171 370 370 LEU LEU A . n A 1 172 ARG 172 371 371 ARG ARG A . n A 1 173 GLY 173 372 372 GLY GLY A . n A 1 174 ARG 174 373 373 ARG ARG A . n A 1 175 GLY 175 374 374 GLY GLY A . n A 1 176 LEU 176 375 375 LEU LEU A . n A 1 177 LEU 177 376 376 LEU LEU A . n A 1 178 PHE 178 377 377 PHE PHE A . n A 1 179 LYS 179 378 378 LYS LYS A . n A 1 180 GLU 180 379 379 GLU GLU A . n A 1 181 GLU 181 380 380 GLU GLU A . n A 1 182 SER 182 381 381 SER SER A . n A 1 183 TYR 183 382 ? ? ? A . n A 1 184 LEU 184 383 ? ? ? A . n A 1 185 HIS 185 384 ? ? ? A . n A 1 186 SER 186 385 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2VA 1 901 901 2VA 2VA A . C 3 HOH 1 1 1 HOH TIP A . C 3 HOH 2 2 2 HOH TIP A . C 3 HOH 3 3 3 HOH TIP A . C 3 HOH 4 4 4 HOH TIP A . C 3 HOH 5 5 5 HOH TIP A . C 3 HOH 6 6 6 HOH TIP A . C 3 HOH 7 7 7 HOH TIP A . C 3 HOH 8 8 8 HOH TIP A . C 3 HOH 9 9 9 HOH TIP A . C 3 HOH 10 10 10 HOH TIP A . C 3 HOH 11 11 11 HOH TIP A . C 3 HOH 12 12 12 HOH TIP A . C 3 HOH 13 13 13 HOH TIP A . C 3 HOH 14 14 14 HOH TIP A . C 3 HOH 15 15 15 HOH TIP A . C 3 HOH 16 16 16 HOH TIP A . C 3 HOH 17 17 17 HOH TIP A . C 3 HOH 18 18 18 HOH TIP A . C 3 HOH 19 19 19 HOH TIP A . C 3 HOH 20 20 20 HOH TIP A . C 3 HOH 21 21 21 HOH TIP A . C 3 HOH 22 22 22 HOH TIP A . C 3 HOH 23 23 23 HOH TIP A . C 3 HOH 24 24 24 HOH TIP A . C 3 HOH 25 25 25 HOH TIP A . C 3 HOH 26 26 26 HOH TIP A . C 3 HOH 27 27 27 HOH TIP A . C 3 HOH 28 28 28 HOH TIP A . C 3 HOH 29 29 29 HOH TIP A . C 3 HOH 30 30 30 HOH TIP A . C 3 HOH 31 31 31 HOH TIP A . C 3 HOH 32 32 32 HOH TIP A . C 3 HOH 33 33 33 HOH TIP A . C 3 HOH 34 34 34 HOH TIP A . C 3 HOH 35 35 35 HOH TIP A . C 3 HOH 36 36 36 HOH TIP A . C 3 HOH 37 37 37 HOH TIP A . C 3 HOH 38 38 38 HOH TIP A . C 3 HOH 39 39 39 HOH TIP A . C 3 HOH 40 40 40 HOH TIP A . C 3 HOH 41 41 41 HOH TIP A . C 3 HOH 42 42 42 HOH TIP A . C 3 HOH 43 43 43 HOH TIP A . C 3 HOH 44 44 44 HOH TIP A . C 3 HOH 45 45 45 HOH TIP A . C 3 HOH 46 46 46 HOH TIP A . C 3 HOH 47 47 47 HOH TIP A . C 3 HOH 48 48 48 HOH TIP A . C 3 HOH 49 49 49 HOH TIP A . C 3 HOH 50 50 50 HOH TIP A . C 3 HOH 51 51 51 HOH TIP A . C 3 HOH 52 52 52 HOH TIP A . C 3 HOH 53 53 53 HOH TIP A . C 3 HOH 54 54 54 HOH TIP A . C 3 HOH 55 55 55 HOH TIP A . C 3 HOH 56 56 56 HOH TIP A . C 3 HOH 57 57 57 HOH TIP A . C 3 HOH 58 58 58 HOH TIP A . C 3 HOH 59 59 59 HOH TIP A . C 3 HOH 60 60 60 HOH TIP A . C 3 HOH 61 61 61 HOH TIP A . C 3 HOH 62 62 62 HOH TIP A . C 3 HOH 63 63 63 HOH TIP A . C 3 HOH 64 64 64 HOH TIP A . C 3 HOH 65 65 65 HOH TIP A . C 3 HOH 66 66 66 HOH TIP A . C 3 HOH 67 67 67 HOH TIP A . C 3 HOH 68 68 68 HOH TIP A . C 3 HOH 69 69 69 HOH TIP A . C 3 HOH 70 70 70 HOH TIP A . C 3 HOH 71 71 71 HOH TIP A . C 3 HOH 72 72 72 HOH TIP A . C 3 HOH 73 73 73 HOH TIP A . C 3 HOH 74 74 74 HOH TIP A . C 3 HOH 75 75 75 HOH TIP A . C 3 HOH 76 76 76 HOH TIP A . C 3 HOH 77 77 77 HOH TIP A . C 3 HOH 78 78 78 HOH TIP A . C 3 HOH 79 79 79 HOH TIP A . C 3 HOH 80 80 80 HOH TIP A . C 3 HOH 81 81 81 HOH TIP A . C 3 HOH 82 82 82 HOH TIP A . C 3 HOH 83 83 83 HOH TIP A . C 3 HOH 84 84 84 HOH TIP A . C 3 HOH 85 85 85 HOH TIP A . C 3 HOH 86 86 86 HOH TIP A . C 3 HOH 87 87 87 HOH TIP A . C 3 HOH 88 88 88 HOH TIP A . C 3 HOH 89 89 89 HOH TIP A . C 3 HOH 90 90 90 HOH TIP A . C 3 HOH 91 91 91 HOH TIP A . C 3 HOH 92 92 92 HOH TIP A . C 3 HOH 93 93 93 HOH TIP A . C 3 HOH 94 94 94 HOH TIP A . C 3 HOH 95 95 95 HOH TIP A . C 3 HOH 96 96 96 HOH TIP A . C 3 HOH 97 97 97 HOH TIP A . C 3 HOH 98 98 98 HOH TIP A . C 3 HOH 99 99 99 HOH TIP A . C 3 HOH 100 100 100 HOH TIP A . C 3 HOH 101 101 101 HOH TIP A . C 3 HOH 102 102 102 HOH TIP A . C 3 HOH 103 103 103 HOH TIP A . C 3 HOH 104 104 104 HOH TIP A . C 3 HOH 105 105 105 HOH TIP A . C 3 HOH 106 106 106 HOH TIP A . C 3 HOH 107 107 107 HOH TIP A . C 3 HOH 108 108 108 HOH TIP A . C 3 HOH 109 109 109 HOH TIP A . C 3 HOH 110 110 110 HOH TIP A . C 3 HOH 111 111 111 HOH TIP A . C 3 HOH 112 112 112 HOH TIP A . C 3 HOH 113 113 113 HOH TIP A . C 3 HOH 114 114 114 HOH TIP A . C 3 HOH 115 115 115 HOH TIP A . C 3 HOH 116 116 116 HOH TIP A . C 3 HOH 117 117 117 HOH TIP A . C 3 HOH 118 118 118 HOH TIP A . C 3 HOH 119 119 119 HOH TIP A . C 3 HOH 120 120 120 HOH TIP A . C 3 HOH 121 121 121 HOH TIP A . C 3 HOH 122 122 122 HOH TIP A . C 3 HOH 123 123 123 HOH TIP A . C 3 HOH 124 124 124 HOH TIP A . C 3 HOH 125 125 125 HOH TIP A . C 3 HOH 126 126 126 HOH TIP A . C 3 HOH 127 127 127 HOH TIP A . C 3 HOH 128 128 128 HOH TIP A . C 3 HOH 129 129 129 HOH TIP A . C 3 HOH 130 130 130 HOH TIP A . C 3 HOH 131 131 131 HOH TIP A . C 3 HOH 132 132 132 HOH TIP A . C 3 HOH 133 133 133 HOH TIP A . C 3 HOH 134 134 134 HOH TIP A . C 3 HOH 135 135 135 HOH TIP A . C 3 HOH 136 136 136 HOH TIP A . C 3 HOH 137 137 137 HOH TIP A . C 3 HOH 138 138 138 HOH TIP A . C 3 HOH 139 139 139 HOH TIP A . C 3 HOH 140 140 140 HOH TIP A . C 3 HOH 141 141 141 HOH TIP A . C 3 HOH 142 142 142 HOH TIP A . C 3 HOH 143 143 143 HOH TIP A . C 3 HOH 144 144 144 HOH TIP A . C 3 HOH 145 145 145 HOH TIP A . C 3 HOH 146 146 146 HOH TIP A . C 3 HOH 147 147 147 HOH TIP A . C 3 HOH 148 148 148 HOH TIP A . C 3 HOH 149 149 149 HOH TIP A . C 3 HOH 150 150 150 HOH TIP A . C 3 HOH 151 151 151 HOH TIP A . C 3 HOH 152 152 152 HOH TIP A . C 3 HOH 153 153 153 HOH TIP A . C 3 HOH 154 154 154 HOH TIP A . C 3 HOH 155 155 155 HOH TIP A . C 3 HOH 156 156 156 HOH TIP A . C 3 HOH 157 157 157 HOH TIP A . C 3 HOH 158 158 158 HOH TIP A . C 3 HOH 159 159 159 HOH TIP A . C 3 HOH 160 160 160 HOH TIP A . C 3 HOH 161 161 161 HOH TIP A . C 3 HOH 162 162 162 HOH TIP A . C 3 HOH 163 163 163 HOH TIP A . C 3 HOH 164 164 164 HOH TIP A . C 3 HOH 165 165 165 HOH TIP A . C 3 HOH 166 166 166 HOH TIP A . C 3 HOH 167 167 167 HOH TIP A . C 3 HOH 168 168 168 HOH TIP A . C 3 HOH 169 169 169 HOH TIP A . C 3 HOH 170 170 170 HOH TIP A . C 3 HOH 171 171 171 HOH TIP A . C 3 HOH 172 172 172 HOH TIP A . C 3 HOH 173 173 173 HOH TIP A . C 3 HOH 174 174 174 HOH TIP A . C 3 HOH 175 175 175 HOH TIP A . C 3 HOH 176 176 176 HOH TIP A . C 3 HOH 177 177 177 HOH TIP A . C 3 HOH 178 178 178 HOH TIP A . C 3 HOH 179 179 179 HOH TIP A . C 3 HOH 180 180 180 HOH TIP A . C 3 HOH 181 181 181 HOH TIP A . C 3 HOH 182 182 182 HOH TIP A . C 3 HOH 183 183 183 HOH TIP A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _cell.entry_id 1WNZ _cell.length_a 72.594 _cell.length_b 72.594 _cell.length_c 83.683 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1WNZ _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1WNZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.67 _exptl_crystal.density_percent_sol 53.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;2.0M ammonium sulfate, 5% (w/v) 2-propanol, and 50mM ADA buffer (pH 6.5), 1mM 2S-(L-valyl)amino-2S-deoxyadenosine, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 1WNZ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.65 _reflns.number_obs 27090 _reflns.number_all 27558 _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 26.7 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.71 _reflns_shell.percent_possible_all 93.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1WNZ _refine.ls_number_reflns_obs 24988 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1672351.09 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.30 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 98.9 _refine.ls_R_factor_obs 0.21 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21 _refine.ls_R_factor_R_free 0.257 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1228 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 41.3 _refine.aniso_B[1][1] 2.97 _refine.aniso_B[2][2] 2.97 _refine.aniso_B[3][3] -5.95 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.401691 _refine.solvent_model_param_bsol 77.6069 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1WNZ _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.27 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.27 _refine_analyze.Luzzati_sigma_a_free 0.25 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1407 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 183 _refine_hist.number_atoms_total 1616 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 33.30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.15 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 4.06 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 5.38 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 6.27 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 8.60 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_R_work 3837 _refine_ls_shell.R_factor_R_work 0.356 _refine_ls_shell.percent_reflns_obs 98.8 _refine_ls_shell.R_factor_R_free 0.337 _refine_ls_shell.R_factor_R_free_error 0.022 _refine_ls_shell.percent_reflns_R_free 5.9 _refine_ls_shell.number_reflns_R_free 239 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 VAL2AA.PARAM VAL2AA.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1WNZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1WNZ _struct.title 'Isoleucyl-tRNA synthetase editing domain complexed with the post-transfer editing substrate analogue, Val-2AA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WNZ _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;Ligase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYI_THET8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFP GKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGLYFR EANRAILRDLRGRGLLFKEESYLHS ; _struct_ref.pdbx_align_begin 201 _struct_ref.pdbx_db_accession P56690 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WNZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 186 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P56690 _struct_ref_seq.db_align_beg 201 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 385 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 201 _struct_ref_seq.pdbx_auth_seq_align_end 385 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WNZ MET A 1 ? UNP P56690 ? ? 'initiating methionine' 200 1 1 1WNZ PRO A 75 ? UNP P56690 GLN 274 conflict 274 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 31 ? ASN A 38 ? THR A 230 ASN A 237 5 ? 8 HELX_P HELX_P2 2 GLU A 63 ? GLY A 71 ? GLU A 262 GLY A 270 1 ? 9 HELX_P HELX_P3 3 GLY A 82 ? GLU A 86 ? GLY A 281 GLU A 285 1 ? 5 HELX_P HELX_P4 4 GLY A 126 ? GLY A 137 ? GLY A 325 GLY A 336 1 ? 12 HELX_P HELX_P5 5 TYR A 159 ? ARG A 174 ? TYR A 358 ARG A 373 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 3 A . ? ASP 202 A PRO 4 A ? PRO 203 A 1 -0.11 2 GLU 153 A . ? GLU 352 A PRO 154 A ? PRO 353 A 1 0.48 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 76 ? PRO A 81 ? VAL A 275 PRO A 280 A 2 THR A 48 ? VAL A 54 ? THR A 247 VAL A 253 A 3 GLU A 57 ? GLU A 62 ? GLU A 256 GLU A 261 A 4 ALA A 23 ? THR A 29 ? ALA A 222 THR A 228 A 5 SER A 5 ? PRO A 11 ? SER A 204 PRO A 210 A 6 LEU A 177 ? GLU A 181 ? LEU A 376 GLU A 380 B 1 VAL A 104 ? LEU A 106 ? VAL A 303 LEU A 305 B 2 ALA A 40 ? VAL A 43 ? ALA A 239 VAL A 242 B 3 VAL A 119 ? GLN A 121 ? VAL A 318 GLN A 320 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 80 ? O PHE A 279 N TYR A 49 ? N TYR A 248 A 2 3 N PHE A 52 ? N PHE A 251 O LEU A 59 ? O LEU A 258 A 3 4 O ILE A 60 ? O ILE A 259 N SER A 24 ? N SER A 223 A 4 5 O ILE A 27 ? O ILE A 226 N VAL A 8 ? N VAL A 207 A 5 6 N TYR A 7 ? N TYR A 206 O LYS A 179 ? O LYS A 378 B 1 2 O VAL A 105 ? O VAL A 304 N ALA A 41 ? N ALA A 240 B 2 3 N ALA A 42 ? N ALA A 241 O VAL A 119 ? O VAL A 318 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 2VA _struct_site.pdbx_auth_seq_id 901 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 17 _struct_site.details 'BINDING SITE FOR RESIDUE 2VA A 901' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 HOH C . ? HOH A 2 . ? 1_555 ? 2 AC1 17 HOH C . ? HOH A 9 . ? 1_555 ? 3 AC1 17 HOH C . ? HOH A 12 . ? 1_555 ? 4 AC1 17 HOH C . ? HOH A 38 . ? 1_555 ? 5 AC1 17 HOH C . ? HOH A 171 . ? 6_565 ? 6 AC1 17 TRP A 28 ? TRP A 227 . ? 1_555 ? 7 AC1 17 THR A 29 ? THR A 228 . ? 1_555 ? 8 AC1 17 THR A 30 ? THR A 229 . ? 1_555 ? 9 AC1 17 THR A 31 ? THR A 230 . ? 1_555 ? 10 AC1 17 THR A 34 ? THR A 233 . ? 1_555 ? 11 AC1 17 SER A 111 ? SER A 310 . ? 1_555 ? 12 AC1 17 ASP A 114 ? ASP A 313 . ? 1_555 ? 13 AC1 17 VAL A 119 ? VAL A 318 . ? 1_555 ? 14 AC1 17 HIS A 120 ? HIS A 319 . ? 1_555 ? 15 AC1 17 PHE A 125 ? PHE A 324 . ? 1_555 ? 16 AC1 17 GLU A 128 ? GLU A 327 . ? 6_565 ? 17 AC1 17 ASP A 129 ? ASP A 328 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 174 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 177 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.05 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 373 ? ? CZ A ARG 373 ? ? NH1 A ARG 373 ? ? 124.00 120.30 3.70 0.50 N 2 1 NE A ARG 373 ? ? CZ A ARG 373 ? ? NH2 A ARG 373 ? ? 116.31 120.30 -3.99 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 339 ? ? -101.25 73.74 2 1 LEU A 340 ? ? -62.03 95.89 3 1 PRO A 353 ? ? -96.40 31.25 4 1 LYS A 378 ? ? -170.36 149.13 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 173 ? C HOH . 2 1 A HOH 175 ? C HOH . 3 1 A HOH 178 ? C HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 200 ? A MET 1 2 1 Y 1 A GLN 201 ? A GLN 2 3 1 Y 1 A TYR 382 ? A TYR 183 4 1 Y 1 A LEU 383 ? A LEU 184 5 1 Y 1 A HIS 384 ? A HIS 185 6 1 Y 1 A SER 385 ? A SER 186 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2VA CG2 C N N 1 2VA CB C N N 2 2VA CG1 C N N 3 2VA CA C N S 4 2VA N N N N 5 2VA C C N N 6 2VA O O N N 7 2VA NAZ N N N 8 2VA "C2'" C N R 9 2VA "C3'" C N S 10 2VA "O3'" O N N 11 2VA "C4'" C N R 12 2VA "C5'" C N N 13 2VA "O5'" O N N 14 2VA "O4'" O N N 15 2VA "C1'" C N R 16 2VA N9 N Y N 17 2VA C8 C Y N 18 2VA N7 N Y N 19 2VA C5 C Y N 20 2VA C4 C Y N 21 2VA N3 N Y N 22 2VA C2 C Y N 23 2VA N1 N Y N 24 2VA C6 C Y N 25 2VA N6 N N N 26 2VA HG21 H N N 27 2VA HG22 H N N 28 2VA HG23 H N N 29 2VA HB H N N 30 2VA HG11 H N N 31 2VA HG12 H N N 32 2VA HG13 H N N 33 2VA HA H N N 34 2VA H H N N 35 2VA H2 H N N 36 2VA HAZ H N N 37 2VA "H2'" H N N 38 2VA "H3'" H N N 39 2VA H1 H N N 40 2VA "H4'" H N N 41 2VA "H5'1" H N N 42 2VA "H5'2" H N N 43 2VA "H5'" H N N 44 2VA "H1'" H N N 45 2VA H8 H N N 46 2VA HC2 H N N 47 2VA HN61 H N N 48 2VA HN62 H N N 49 ALA N N N N 50 ALA CA C N S 51 ALA C C N N 52 ALA O O N N 53 ALA CB C N N 54 ALA OXT O N N 55 ALA H H N N 56 ALA H2 H N N 57 ALA HA H N N 58 ALA HB1 H N N 59 ALA HB2 H N N 60 ALA HB3 H N N 61 ALA HXT H N N 62 ARG N N N N 63 ARG CA C N S 64 ARG C C N N 65 ARG O O N N 66 ARG CB C N N 67 ARG CG C N N 68 ARG CD C N N 69 ARG NE N N N 70 ARG CZ C N N 71 ARG NH1 N N N 72 ARG NH2 N N N 73 ARG OXT O N N 74 ARG H H N N 75 ARG H2 H N N 76 ARG HA H N N 77 ARG HB2 H N N 78 ARG HB3 H N N 79 ARG HG2 H N N 80 ARG HG3 H N N 81 ARG HD2 H N N 82 ARG HD3 H N N 83 ARG HE H N N 84 ARG HH11 H N N 85 ARG HH12 H N N 86 ARG HH21 H N N 87 ARG HH22 H N N 88 ARG HXT H N N 89 ASN N N N N 90 ASN CA C N S 91 ASN C C N N 92 ASN O O N N 93 ASN CB C N N 94 ASN CG C N N 95 ASN OD1 O N N 96 ASN ND2 N N N 97 ASN OXT O N N 98 ASN H H N N 99 ASN H2 H N N 100 ASN HA H N N 101 ASN HB2 H N N 102 ASN HB3 H N N 103 ASN HD21 H N N 104 ASN HD22 H N N 105 ASN HXT H N N 106 ASP N N N N 107 ASP CA C N S 108 ASP C C N N 109 ASP O O N N 110 ASP CB C N N 111 ASP CG C N N 112 ASP OD1 O N N 113 ASP OD2 O N N 114 ASP OXT O N N 115 ASP H H N N 116 ASP H2 H N N 117 ASP HA H N N 118 ASP HB2 H N N 119 ASP HB3 H N N 120 ASP HD2 H N N 121 ASP HXT H N N 122 GLN N N N N 123 GLN CA C N S 124 GLN C C N N 125 GLN O O N N 126 GLN CB C N N 127 GLN CG C N N 128 GLN CD C N N 129 GLN OE1 O N N 130 GLN NE2 N N N 131 GLN OXT O N N 132 GLN H H N N 133 GLN H2 H N N 134 GLN HA H N N 135 GLN HB2 H N N 136 GLN HB3 H N N 137 GLN HG2 H N N 138 GLN HG3 H N N 139 GLN HE21 H N N 140 GLN HE22 H N N 141 GLN HXT H N N 142 GLU N N N N 143 GLU CA C N S 144 GLU C C N N 145 GLU O O N N 146 GLU CB C N N 147 GLU CG C N N 148 GLU CD C N N 149 GLU OE1 O N N 150 GLU OE2 O N N 151 GLU OXT O N N 152 GLU H H N N 153 GLU H2 H N N 154 GLU HA H N N 155 GLU HB2 H N N 156 GLU HB3 H N N 157 GLU HG2 H N N 158 GLU HG3 H N N 159 GLU HE2 H N N 160 GLU HXT H N N 161 GLY N N N N 162 GLY CA C N N 163 GLY C C N N 164 GLY O O N N 165 GLY OXT O N N 166 GLY H H N N 167 GLY H2 H N N 168 GLY HA2 H N N 169 GLY HA3 H N N 170 GLY HXT H N N 171 HIS N N N N 172 HIS CA C N S 173 HIS C C N N 174 HIS O O N N 175 HIS CB C N N 176 HIS CG C Y N 177 HIS ND1 N Y N 178 HIS CD2 C Y N 179 HIS CE1 C Y N 180 HIS NE2 N Y N 181 HIS OXT O N N 182 HIS H H N N 183 HIS H2 H N N 184 HIS HA H N N 185 HIS HB2 H N N 186 HIS HB3 H N N 187 HIS HD1 H N N 188 HIS HD2 H N N 189 HIS HE1 H N N 190 HIS HE2 H N N 191 HIS HXT H N N 192 HOH O O N N 193 HOH H1 H N N 194 HOH H2 H N N 195 ILE N N N N 196 ILE CA C N S 197 ILE C C N N 198 ILE O O N N 199 ILE CB C N S 200 ILE CG1 C N N 201 ILE CG2 C N N 202 ILE CD1 C N N 203 ILE OXT O N N 204 ILE H H N N 205 ILE H2 H N N 206 ILE HA H N N 207 ILE HB H N N 208 ILE HG12 H N N 209 ILE HG13 H N N 210 ILE HG21 H N N 211 ILE HG22 H N N 212 ILE HG23 H N N 213 ILE HD11 H N N 214 ILE HD12 H N N 215 ILE HD13 H N N 216 ILE HXT H N N 217 LEU N N N N 218 LEU CA C N S 219 LEU C C N N 220 LEU O O N N 221 LEU CB C N N 222 LEU CG C N N 223 LEU CD1 C N N 224 LEU CD2 C N N 225 LEU OXT O N N 226 LEU H H N N 227 LEU H2 H N N 228 LEU HA H N N 229 LEU HB2 H N N 230 LEU HB3 H N N 231 LEU HG H N N 232 LEU HD11 H N N 233 LEU HD12 H N N 234 LEU HD13 H N N 235 LEU HD21 H N N 236 LEU HD22 H N N 237 LEU HD23 H N N 238 LEU HXT H N N 239 LYS N N N N 240 LYS CA C N S 241 LYS C C N N 242 LYS O O N N 243 LYS CB C N N 244 LYS CG C N N 245 LYS CD C N N 246 LYS CE C N N 247 LYS NZ N N N 248 LYS OXT O N N 249 LYS H H N N 250 LYS H2 H N N 251 LYS HA H N N 252 LYS HB2 H N N 253 LYS HB3 H N N 254 LYS HG2 H N N 255 LYS HG3 H N N 256 LYS HD2 H N N 257 LYS HD3 H N N 258 LYS HE2 H N N 259 LYS HE3 H N N 260 LYS HZ1 H N N 261 LYS HZ2 H N N 262 LYS HZ3 H N N 263 LYS HXT H N N 264 MET N N N N 265 MET CA C N S 266 MET C C N N 267 MET O O N N 268 MET CB C N N 269 MET CG C N N 270 MET SD S N N 271 MET CE C N N 272 MET OXT O N N 273 MET H H N N 274 MET H2 H N N 275 MET HA H N N 276 MET HB2 H N N 277 MET HB3 H N N 278 MET HG2 H N N 279 MET HG3 H N N 280 MET HE1 H N N 281 MET HE2 H N N 282 MET HE3 H N N 283 MET HXT H N N 284 PHE N N N N 285 PHE CA C N S 286 PHE C C N N 287 PHE O O N N 288 PHE CB C N N 289 PHE CG C Y N 290 PHE CD1 C Y N 291 PHE CD2 C Y N 292 PHE CE1 C Y N 293 PHE CE2 C Y N 294 PHE CZ C Y N 295 PHE OXT O N N 296 PHE H H N N 297 PHE H2 H N N 298 PHE HA H N N 299 PHE HB2 H N N 300 PHE HB3 H N N 301 PHE HD1 H N N 302 PHE HD2 H N N 303 PHE HE1 H N N 304 PHE HE2 H N N 305 PHE HZ H N N 306 PHE HXT H N N 307 PRO N N N N 308 PRO CA C N S 309 PRO C C N N 310 PRO O O N N 311 PRO CB C N N 312 PRO CG C N N 313 PRO CD C N N 314 PRO OXT O N N 315 PRO H H N N 316 PRO HA H N N 317 PRO HB2 H N N 318 PRO HB3 H N N 319 PRO HG2 H N N 320 PRO HG3 H N N 321 PRO HD2 H N N 322 PRO HD3 H N N 323 PRO HXT H N N 324 SER N N N N 325 SER CA C N S 326 SER C C N N 327 SER O O N N 328 SER CB C N N 329 SER OG O N N 330 SER OXT O N N 331 SER H H N N 332 SER H2 H N N 333 SER HA H N N 334 SER HB2 H N N 335 SER HB3 H N N 336 SER HG H N N 337 SER HXT H N N 338 THR N N N N 339 THR CA C N S 340 THR C C N N 341 THR O O N N 342 THR CB C N R 343 THR OG1 O N N 344 THR CG2 C N N 345 THR OXT O N N 346 THR H H N N 347 THR H2 H N N 348 THR HA H N N 349 THR HB H N N 350 THR HG1 H N N 351 THR HG21 H N N 352 THR HG22 H N N 353 THR HG23 H N N 354 THR HXT H N N 355 TRP N N N N 356 TRP CA C N S 357 TRP C C N N 358 TRP O O N N 359 TRP CB C N N 360 TRP CG C Y N 361 TRP CD1 C Y N 362 TRP CD2 C Y N 363 TRP NE1 N Y N 364 TRP CE2 C Y N 365 TRP CE3 C Y N 366 TRP CZ2 C Y N 367 TRP CZ3 C Y N 368 TRP CH2 C Y N 369 TRP OXT O N N 370 TRP H H N N 371 TRP H2 H N N 372 TRP HA H N N 373 TRP HB2 H N N 374 TRP HB3 H N N 375 TRP HD1 H N N 376 TRP HE1 H N N 377 TRP HE3 H N N 378 TRP HZ2 H N N 379 TRP HZ3 H N N 380 TRP HH2 H N N 381 TRP HXT H N N 382 TYR N N N N 383 TYR CA C N S 384 TYR C C N N 385 TYR O O N N 386 TYR CB C N N 387 TYR CG C Y N 388 TYR CD1 C Y N 389 TYR CD2 C Y N 390 TYR CE1 C Y N 391 TYR CE2 C Y N 392 TYR CZ C Y N 393 TYR OH O N N 394 TYR OXT O N N 395 TYR H H N N 396 TYR H2 H N N 397 TYR HA H N N 398 TYR HB2 H N N 399 TYR HB3 H N N 400 TYR HD1 H N N 401 TYR HD2 H N N 402 TYR HE1 H N N 403 TYR HE2 H N N 404 TYR HH H N N 405 TYR HXT H N N 406 VAL N N N N 407 VAL CA C N S 408 VAL C C N N 409 VAL O O N N 410 VAL CB C N N 411 VAL CG1 C N N 412 VAL CG2 C N N 413 VAL OXT O N N 414 VAL H H N N 415 VAL H2 H N N 416 VAL HA H N N 417 VAL HB H N N 418 VAL HG11 H N N 419 VAL HG12 H N N 420 VAL HG13 H N N 421 VAL HG21 H N N 422 VAL HG22 H N N 423 VAL HG23 H N N 424 VAL HXT H N N 425 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2VA CG2 CB sing N N 1 2VA CG2 HG21 sing N N 2 2VA CG2 HG22 sing N N 3 2VA CG2 HG23 sing N N 4 2VA CB CG1 sing N N 5 2VA CB CA sing N N 6 2VA CB HB sing N N 7 2VA CG1 HG11 sing N N 8 2VA CG1 HG12 sing N N 9 2VA CG1 HG13 sing N N 10 2VA CA N sing N N 11 2VA CA C sing N N 12 2VA CA HA sing N N 13 2VA N H sing N N 14 2VA N H2 sing N N 15 2VA C O doub N N 16 2VA C NAZ sing N N 17 2VA NAZ "C2'" sing N N 18 2VA NAZ HAZ sing N N 19 2VA "C2'" "C3'" sing N N 20 2VA "C2'" "C1'" sing N N 21 2VA "C2'" "H2'" sing N N 22 2VA "C3'" "O3'" sing N N 23 2VA "C3'" "C4'" sing N N 24 2VA "C3'" "H3'" sing N N 25 2VA "O3'" H1 sing N N 26 2VA "C4'" "C5'" sing N N 27 2VA "C4'" "O4'" sing N N 28 2VA "C4'" "H4'" sing N N 29 2VA "C5'" "O5'" sing N N 30 2VA "C5'" "H5'1" sing N N 31 2VA "C5'" "H5'2" sing N N 32 2VA "O5'" "H5'" sing N N 33 2VA "O4'" "C1'" sing N N 34 2VA "C1'" N9 sing N N 35 2VA "C1'" "H1'" sing N N 36 2VA N9 C8 sing Y N 37 2VA N9 C4 sing Y N 38 2VA C8 N7 doub Y N 39 2VA C8 H8 sing N N 40 2VA N7 C5 sing Y N 41 2VA C5 C4 doub Y N 42 2VA C5 C6 sing Y N 43 2VA C4 N3 sing Y N 44 2VA N3 C2 doub Y N 45 2VA C2 N1 sing Y N 46 2VA C2 HC2 sing N N 47 2VA N1 C6 doub Y N 48 2VA C6 N6 sing N N 49 2VA N6 HN61 sing N N 50 2VA N6 HN62 sing N N 51 ALA N CA sing N N 52 ALA N H sing N N 53 ALA N H2 sing N N 54 ALA CA C sing N N 55 ALA CA CB sing N N 56 ALA CA HA sing N N 57 ALA C O doub N N 58 ALA C OXT sing N N 59 ALA CB HB1 sing N N 60 ALA CB HB2 sing N N 61 ALA CB HB3 sing N N 62 ALA OXT HXT sing N N 63 ARG N CA sing N N 64 ARG N H sing N N 65 ARG N H2 sing N N 66 ARG CA C sing N N 67 ARG CA CB sing N N 68 ARG CA HA sing N N 69 ARG C O doub N N 70 ARG C OXT sing N N 71 ARG CB CG sing N N 72 ARG CB HB2 sing N N 73 ARG CB HB3 sing N N 74 ARG CG CD sing N N 75 ARG CG HG2 sing N N 76 ARG CG HG3 sing N N 77 ARG CD NE sing N N 78 ARG CD HD2 sing N N 79 ARG CD HD3 sing N N 80 ARG NE CZ sing N N 81 ARG NE HE sing N N 82 ARG CZ NH1 sing N N 83 ARG CZ NH2 doub N N 84 ARG NH1 HH11 sing N N 85 ARG NH1 HH12 sing N N 86 ARG NH2 HH21 sing N N 87 ARG NH2 HH22 sing N N 88 ARG OXT HXT sing N N 89 ASN N CA sing N N 90 ASN N H sing N N 91 ASN N H2 sing N N 92 ASN CA C sing N N 93 ASN CA CB sing N N 94 ASN CA HA sing N N 95 ASN C O doub N N 96 ASN C OXT sing N N 97 ASN CB CG sing N N 98 ASN CB HB2 sing N N 99 ASN CB HB3 sing N N 100 ASN CG OD1 doub N N 101 ASN CG ND2 sing N N 102 ASN ND2 HD21 sing N N 103 ASN ND2 HD22 sing N N 104 ASN OXT HXT sing N N 105 ASP N CA sing N N 106 ASP N H sing N N 107 ASP N H2 sing N N 108 ASP CA C sing N N 109 ASP CA CB sing N N 110 ASP CA HA sing N N 111 ASP C O doub N N 112 ASP C OXT sing N N 113 ASP CB CG sing N N 114 ASP CB HB2 sing N N 115 ASP CB HB3 sing N N 116 ASP CG OD1 doub N N 117 ASP CG OD2 sing N N 118 ASP OD2 HD2 sing N N 119 ASP OXT HXT sing N N 120 GLN N CA sing N N 121 GLN N H sing N N 122 GLN N H2 sing N N 123 GLN CA C sing N N 124 GLN CA CB sing N N 125 GLN CA HA sing N N 126 GLN C O doub N N 127 GLN C OXT sing N N 128 GLN CB CG sing N N 129 GLN CB HB2 sing N N 130 GLN CB HB3 sing N N 131 GLN CG CD sing N N 132 GLN CG HG2 sing N N 133 GLN CG HG3 sing N N 134 GLN CD OE1 doub N N 135 GLN CD NE2 sing N N 136 GLN NE2 HE21 sing N N 137 GLN NE2 HE22 sing N N 138 GLN OXT HXT sing N N 139 GLU N CA sing N N 140 GLU N H sing N N 141 GLU N H2 sing N N 142 GLU CA C sing N N 143 GLU CA CB sing N N 144 GLU CA HA sing N N 145 GLU C O doub N N 146 GLU C OXT sing N N 147 GLU CB CG sing N N 148 GLU CB HB2 sing N N 149 GLU CB HB3 sing N N 150 GLU CG CD sing N N 151 GLU CG HG2 sing N N 152 GLU CG HG3 sing N N 153 GLU CD OE1 doub N N 154 GLU CD OE2 sing N N 155 GLU OE2 HE2 sing N N 156 GLU OXT HXT sing N N 157 GLY N CA sing N N 158 GLY N H sing N N 159 GLY N H2 sing N N 160 GLY CA C sing N N 161 GLY CA HA2 sing N N 162 GLY CA HA3 sing N N 163 GLY C O doub N N 164 GLY C OXT sing N N 165 GLY OXT HXT sing N N 166 HIS N CA sing N N 167 HIS N H sing N N 168 HIS N H2 sing N N 169 HIS CA C sing N N 170 HIS CA CB sing N N 171 HIS CA HA sing N N 172 HIS C O doub N N 173 HIS C OXT sing N N 174 HIS CB CG sing N N 175 HIS CB HB2 sing N N 176 HIS CB HB3 sing N N 177 HIS CG ND1 sing Y N 178 HIS CG CD2 doub Y N 179 HIS ND1 CE1 doub Y N 180 HIS ND1 HD1 sing N N 181 HIS CD2 NE2 sing Y N 182 HIS CD2 HD2 sing N N 183 HIS CE1 NE2 sing Y N 184 HIS CE1 HE1 sing N N 185 HIS NE2 HE2 sing N N 186 HIS OXT HXT sing N N 187 HOH O H1 sing N N 188 HOH O H2 sing N N 189 ILE N CA sing N N 190 ILE N H sing N N 191 ILE N H2 sing N N 192 ILE CA C sing N N 193 ILE CA CB sing N N 194 ILE CA HA sing N N 195 ILE C O doub N N 196 ILE C OXT sing N N 197 ILE CB CG1 sing N N 198 ILE CB CG2 sing N N 199 ILE CB HB sing N N 200 ILE CG1 CD1 sing N N 201 ILE CG1 HG12 sing N N 202 ILE CG1 HG13 sing N N 203 ILE CG2 HG21 sing N N 204 ILE CG2 HG22 sing N N 205 ILE CG2 HG23 sing N N 206 ILE CD1 HD11 sing N N 207 ILE CD1 HD12 sing N N 208 ILE CD1 HD13 sing N N 209 ILE OXT HXT sing N N 210 LEU N CA sing N N 211 LEU N H sing N N 212 LEU N H2 sing N N 213 LEU CA C sing N N 214 LEU CA CB sing N N 215 LEU CA HA sing N N 216 LEU C O doub N N 217 LEU C OXT sing N N 218 LEU CB CG sing N N 219 LEU CB HB2 sing N N 220 LEU CB HB3 sing N N 221 LEU CG CD1 sing N N 222 LEU CG CD2 sing N N 223 LEU CG HG sing N N 224 LEU CD1 HD11 sing N N 225 LEU CD1 HD12 sing N N 226 LEU CD1 HD13 sing N N 227 LEU CD2 HD21 sing N N 228 LEU CD2 HD22 sing N N 229 LEU CD2 HD23 sing N N 230 LEU OXT HXT sing N N 231 LYS N CA sing N N 232 LYS N H sing N N 233 LYS N H2 sing N N 234 LYS CA C sing N N 235 LYS CA CB sing N N 236 LYS CA HA sing N N 237 LYS C O doub N N 238 LYS C OXT sing N N 239 LYS CB CG sing N N 240 LYS CB HB2 sing N N 241 LYS CB HB3 sing N N 242 LYS CG CD sing N N 243 LYS CG HG2 sing N N 244 LYS CG HG3 sing N N 245 LYS CD CE sing N N 246 LYS CD HD2 sing N N 247 LYS CD HD3 sing N N 248 LYS CE NZ sing N N 249 LYS CE HE2 sing N N 250 LYS CE HE3 sing N N 251 LYS NZ HZ1 sing N N 252 LYS NZ HZ2 sing N N 253 LYS NZ HZ3 sing N N 254 LYS OXT HXT sing N N 255 MET N CA sing N N 256 MET N H sing N N 257 MET N H2 sing N N 258 MET CA C sing N N 259 MET CA CB sing N N 260 MET CA HA sing N N 261 MET C O doub N N 262 MET C OXT sing N N 263 MET CB CG sing N N 264 MET CB HB2 sing N N 265 MET CB HB3 sing N N 266 MET CG SD sing N N 267 MET CG HG2 sing N N 268 MET CG HG3 sing N N 269 MET SD CE sing N N 270 MET CE HE1 sing N N 271 MET CE HE2 sing N N 272 MET CE HE3 sing N N 273 MET OXT HXT sing N N 274 PHE N CA sing N N 275 PHE N H sing N N 276 PHE N H2 sing N N 277 PHE CA C sing N N 278 PHE CA CB sing N N 279 PHE CA HA sing N N 280 PHE C O doub N N 281 PHE C OXT sing N N 282 PHE CB CG sing N N 283 PHE CB HB2 sing N N 284 PHE CB HB3 sing N N 285 PHE CG CD1 doub Y N 286 PHE CG CD2 sing Y N 287 PHE CD1 CE1 sing Y N 288 PHE CD1 HD1 sing N N 289 PHE CD2 CE2 doub Y N 290 PHE CD2 HD2 sing N N 291 PHE CE1 CZ doub Y N 292 PHE CE1 HE1 sing N N 293 PHE CE2 CZ sing Y N 294 PHE CE2 HE2 sing N N 295 PHE CZ HZ sing N N 296 PHE OXT HXT sing N N 297 PRO N CA sing N N 298 PRO N CD sing N N 299 PRO N H sing N N 300 PRO CA C sing N N 301 PRO CA CB sing N N 302 PRO CA HA sing N N 303 PRO C O doub N N 304 PRO C OXT sing N N 305 PRO CB CG sing N N 306 PRO CB HB2 sing N N 307 PRO CB HB3 sing N N 308 PRO CG CD sing N N 309 PRO CG HG2 sing N N 310 PRO CG HG3 sing N N 311 PRO CD HD2 sing N N 312 PRO CD HD3 sing N N 313 PRO OXT HXT sing N N 314 SER N CA sing N N 315 SER N H sing N N 316 SER N H2 sing N N 317 SER CA C sing N N 318 SER CA CB sing N N 319 SER CA HA sing N N 320 SER C O doub N N 321 SER C OXT sing N N 322 SER CB OG sing N N 323 SER CB HB2 sing N N 324 SER CB HB3 sing N N 325 SER OG HG sing N N 326 SER OXT HXT sing N N 327 THR N CA sing N N 328 THR N H sing N N 329 THR N H2 sing N N 330 THR CA C sing N N 331 THR CA CB sing N N 332 THR CA HA sing N N 333 THR C O doub N N 334 THR C OXT sing N N 335 THR CB OG1 sing N N 336 THR CB CG2 sing N N 337 THR CB HB sing N N 338 THR OG1 HG1 sing N N 339 THR CG2 HG21 sing N N 340 THR CG2 HG22 sing N N 341 THR CG2 HG23 sing N N 342 THR OXT HXT sing N N 343 TRP N CA sing N N 344 TRP N H sing N N 345 TRP N H2 sing N N 346 TRP CA C sing N N 347 TRP CA CB sing N N 348 TRP CA HA sing N N 349 TRP C O doub N N 350 TRP C OXT sing N N 351 TRP CB CG sing N N 352 TRP CB HB2 sing N N 353 TRP CB HB3 sing N N 354 TRP CG CD1 doub Y N 355 TRP CG CD2 sing Y N 356 TRP CD1 NE1 sing Y N 357 TRP CD1 HD1 sing N N 358 TRP CD2 CE2 doub Y N 359 TRP CD2 CE3 sing Y N 360 TRP NE1 CE2 sing Y N 361 TRP NE1 HE1 sing N N 362 TRP CE2 CZ2 sing Y N 363 TRP CE3 CZ3 doub Y N 364 TRP CE3 HE3 sing N N 365 TRP CZ2 CH2 doub Y N 366 TRP CZ2 HZ2 sing N N 367 TRP CZ3 CH2 sing Y N 368 TRP CZ3 HZ3 sing N N 369 TRP CH2 HH2 sing N N 370 TRP OXT HXT sing N N 371 TYR N CA sing N N 372 TYR N H sing N N 373 TYR N H2 sing N N 374 TYR CA C sing N N 375 TYR CA CB sing N N 376 TYR CA HA sing N N 377 TYR C O doub N N 378 TYR C OXT sing N N 379 TYR CB CG sing N N 380 TYR CB HB2 sing N N 381 TYR CB HB3 sing N N 382 TYR CG CD1 doub Y N 383 TYR CG CD2 sing Y N 384 TYR CD1 CE1 sing Y N 385 TYR CD1 HD1 sing N N 386 TYR CD2 CE2 doub Y N 387 TYR CD2 HD2 sing N N 388 TYR CE1 CZ doub Y N 389 TYR CE1 HE1 sing N N 390 TYR CE2 CZ sing Y N 391 TYR CE2 HE2 sing N N 392 TYR CZ OH sing N N 393 TYR OH HH sing N N 394 TYR OXT HXT sing N N 395 VAL N CA sing N N 396 VAL N H sing N N 397 VAL N H2 sing N N 398 VAL CA C sing N N 399 VAL CA CB sing N N 400 VAL CA HA sing N N 401 VAL C O doub N N 402 VAL C OXT sing N N 403 VAL CB CG1 sing N N 404 VAL CB CG2 sing N N 405 VAL CB HB sing N N 406 VAL CG1 HG11 sing N N 407 VAL CG1 HG12 sing N N 408 VAL CG1 HG13 sing N N 409 VAL CG2 HG21 sing N N 410 VAL CG2 HG22 sing N N 411 VAL CG2 HG23 sing N N 412 VAL OXT HXT sing N N 413 # _atom_sites.entry_id 1WNZ _atom_sites.fract_transf_matrix[1][1] 0.013775 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013775 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011950 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_