HEADER TRANSCRIPTION 25-MAR-05 1X0O TITLE HUMAN ARNT C-TERMINAL PAS DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL PAS DOMAIN; COMPND 5 SYNONYM: ARNT PROTEIN, DIOXIN RECEPTOR, NUCLEAR TRANSLOCATOR, COMPND 6 HYPOXIA-INDUCIBLE FACTOR 1 BETA, HIF-1 BETA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS PAS, MIXED ALPHA-BETA FOLD, HYPOXIA, ARYL HYDROCARBON RECEPTOR KEYWDS 2 NUCLEAR TRANSLOCATOR, ARNT, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.B.CARD,P.J.ERBEL,K.H.GARDNER REVDAT 3 02-MAR-22 1X0O 1 REMARK SEQADV REVDAT 2 24-FEB-09 1X0O 1 VERSN REVDAT 1 25-OCT-05 1X0O 0 JRNL AUTH P.B.CARD,P.J.ERBEL,K.H.GARDNER JRNL TITL STRUCTURAL BASIS OF ARNT PAS-B DIMERIZATION: USE OF A COMMON JRNL TITL 2 BETA-SHEET INTERFACE FOR HETERO- AND HOMODIMERIZATION. JRNL REF J.MOL.BIOL. V. 353 664 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16181639 JRNL DOI 10.1016/J.JMB.2005.08.043 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3, CNS 1.1 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X0O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000024231. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 310 REMARK 210 PH : 6.5; 6.6 REMARK 210 IONIC STRENGTH : 17MM NACL; 17MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM HARNT C-TERM PAS DOMAIN U REMARK 210 -15N,13C; 50MM TRIS BUFFER; 17MM REMARK 210 NACL, 5MM DTT; 0.478MM HARNT C- REMARK 210 TERM PAS DOMAIN U-15N; 50MM TRIS REMARK 210 BUFFER; 17MM NACL, 5MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N_13C-SEPERATED NOESY; REMARK 210 3D_15N-SEPARATED_NOESY; HNHA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D_15N-SEPERATED TOCSY; 3D HCCH- REMARK 210 TOCSY; HBCBCGCDHD; IPAP_HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.2.2, ARIA 1.2, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 5 REMARK 210 REMARK 210 REMARK: USED STANDARD 2D AND 3D HOMONUCLEAR AND HETERONUCLEAR REMARK 210 -EDITED TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 50 OD2 ASP A 53 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 65.40 60.08 REMARK 500 1 VAL A 6 122.98 74.37 REMARK 500 1 LYS A 68 98.46 61.93 REMARK 500 1 PRO A 98 32.19 -69.71 REMARK 500 1 VAL A 113 -90.33 -101.75 REMARK 500 1 SER A 116 43.59 -145.67 REMARK 500 1 SER A 117 -43.66 -164.16 REMARK 500 2 MET A 3 -32.95 175.71 REMARK 500 2 LYS A 68 96.37 62.12 REMARK 500 2 SER A 100 -21.34 -146.35 REMARK 500 2 VAL A 113 -92.47 -98.88 REMARK 500 2 SER A 117 131.60 -178.04 REMARK 500 3 VAL A 6 132.84 -170.26 REMARK 500 3 THR A 10 31.43 -87.34 REMARK 500 3 LYS A 68 93.48 57.48 REMARK 500 3 SER A 100 -16.31 -145.06 REMARK 500 3 VAL A 113 -97.96 -95.08 REMARK 500 3 ASN A 115 -148.40 53.30 REMARK 500 4 ASN A 5 93.81 -171.24 REMARK 500 4 CYS A 7 77.47 57.77 REMARK 500 4 LYS A 68 80.54 49.08 REMARK 500 4 PRO A 98 -9.91 -59.55 REMARK 500 4 VAL A 113 -91.09 -92.92 REMARK 500 5 VAL A 6 144.28 -175.99 REMARK 500 5 PRO A 9 153.29 -48.12 REMARK 500 5 LYS A 68 109.72 -29.58 REMARK 500 5 SER A 80 -178.53 -63.79 REMARK 500 5 ASP A 101 -19.30 73.24 REMARK 500 5 TYR A 105 -174.59 -179.03 REMARK 500 5 VAL A 113 -140.81 -92.57 REMARK 500 5 LYS A 114 -154.54 -129.33 REMARK 500 5 ASN A 115 -48.64 74.83 REMARK 500 6 MET A 3 -66.05 69.47 REMARK 500 6 ASN A 5 -75.59 69.30 REMARK 500 6 VAL A 6 -172.35 -179.02 REMARK 500 6 CYS A 7 91.54 -61.65 REMARK 500 6 LYS A 68 92.33 58.66 REMARK 500 6 SER A 100 -24.47 -145.96 REMARK 500 6 ASP A 101 -7.40 69.75 REMARK 500 6 SER A 116 -71.56 73.29 REMARK 500 6 GLN A 118 91.09 77.76 REMARK 500 7 MET A 3 -156.98 64.53 REMARK 500 7 THR A 10 32.86 -89.13 REMARK 500 7 LYS A 68 99.36 62.36 REMARK 500 7 PRO A 98 9.40 -68.25 REMARK 500 7 VAL A 113 -113.60 -88.90 REMARK 500 7 ASN A 115 45.97 73.02 REMARK 500 7 SER A 116 44.49 -154.90 REMARK 500 8 ALA A 2 -64.86 -134.68 REMARK 500 8 MET A 3 117.62 67.75 REMARK 500 REMARK 500 THIS ENTRY HAS 154 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 12 ARG A 79 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1X0O A 5 119 UNP P27540 ARNT_HUMAN 356 470 SEQADV 1X0O GLY A 1 UNP P27540 CLONING ARTIFACT SEQADV 1X0O ALA A 2 UNP P27540 CLONING ARTIFACT SEQADV 1X0O MET A 3 UNP P27540 CLONING ARTIFACT SEQADV 1X0O ASP A 4 UNP P27540 CLONING ARTIFACT SEQRES 1 A 119 GLY ALA MET ASP ASN VAL CYS GLN PRO THR GLU PHE ILE SEQRES 2 A 119 SER ARG HIS ASN ILE GLU GLY ILE PHE THR PHE VAL ASP SEQRES 3 A 119 HIS ARG CYS VAL ALA THR VAL GLY TYR GLN PRO GLN GLU SEQRES 4 A 119 LEU LEU GLY LYS ASN ILE VAL GLU PHE CYS HIS PRO GLU SEQRES 5 A 119 ASP GLN GLN LEU LEU ARG ASP SER PHE GLN GLN VAL VAL SEQRES 6 A 119 LYS LEU LYS GLY GLN VAL LEU SER VAL MET PHE ARG PHE SEQRES 7 A 119 ARG SER LYS ASN GLN GLU TRP LEU TRP MET ARG THR SER SEQRES 8 A 119 SER PHE THR PHE GLN ASN PRO TYR SER ASP GLU ILE GLU SEQRES 9 A 119 TYR ILE ILE CYS THR ASN THR ASN VAL LYS ASN SER SER SEQRES 10 A 119 GLN GLU HELIX 1 1 ARG A 28 GLY A 34 1 7 HELIX 2 2 GLN A 36 LEU A 41 1 6 HELIX 3 3 ASP A 53 LYS A 68 1 16 SHEET 1 A 5 PHE A 22 VAL A 25 0 SHEET 2 A 5 GLU A 11 HIS A 16 -1 N ARG A 15 O PHE A 24 SHEET 3 A 5 ILE A 103 ASN A 112 -1 O CYS A 108 N SER A 14 SHEET 4 A 5 TRP A 85 GLN A 96 -1 N ARG A 89 O THR A 111 SHEET 5 A 5 LEU A 72 ARG A 79 -1 N VAL A 74 O THR A 90 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1