data_1X42 # _entry.id 1X42 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1X42 RCSB RCSB024352 WWPDB D_1000024352 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id pho001000459.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X42 _pdbx_database_status.recvd_initial_deposition_date 2005-05-12 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Arai, R.' 1 'Kukimoto-Niino, M.' 2 'Sugahara, M.' 3 'Shirouzu, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Crystal structure of the probable haloacid dehalogenase PH0459 from Pyrococcus horikoshii OT3' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 15 _citation.page_first 373 _citation.page_last 377 _citation.year 2006 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16385007 _citation.pdbx_database_id_DOI 10.1110/ps.051922406 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Arai, R.' 1 primary 'Kukimoto-Niino, M.' 2 primary 'Kuroishi, C.' 3 primary 'Bessho, Y.' 4 primary 'Shirouzu, M.' 5 primary 'Yokoyama, S.' 6 # _cell.entry_id 1X42 _cell.length_a 34.113 _cell.length_b 71.272 _cell.length_c 53.615 _cell.angle_alpha 90.00 _cell.angle_beta 93.51 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1X42 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein PH0459' 27092.984 1 3.8.1.- ? ? ? 2 water nat water 18.015 150 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)IRAVFFDFVGTLLSVEGEAKTHLKI(MSE)EEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYRPIRDIEEEV (MSE)RKLAEKYGFKYPENFWEIHLR(MSE)HQRYGELYPEVVEVLKSLKGKYHVG(MSE)ITDSDTEYL(MSE)AHLDA LGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVYVGDNPVKDCGGSKNLG(MSE)TSILLDRKGEKREFWDK CDFIVSDLREVIKIVDELNGQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MIRAVFFDFVGTLLSVEGEAKTHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYRPIRDIEEEVMRKLAEKYG FKYPENFWEIHLRMHQRYGELYPEVVEVLKSLKGKYHVGMITDSDTEYLMAHLDALGIKDLFDSITTSEEAGFFKPHPRI FELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREVIKIVDELNGQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier pho001000459.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ILE n 1 3 ARG n 1 4 ALA n 1 5 VAL n 1 6 PHE n 1 7 PHE n 1 8 ASP n 1 9 PHE n 1 10 VAL n 1 11 GLY n 1 12 THR n 1 13 LEU n 1 14 LEU n 1 15 SER n 1 16 VAL n 1 17 GLU n 1 18 GLY n 1 19 GLU n 1 20 ALA n 1 21 LYS n 1 22 THR n 1 23 HIS n 1 24 LEU n 1 25 LYS n 1 26 ILE n 1 27 MSE n 1 28 GLU n 1 29 GLU n 1 30 VAL n 1 31 LEU n 1 32 GLY n 1 33 ASP n 1 34 TYR n 1 35 PRO n 1 36 LEU n 1 37 ASN n 1 38 PRO n 1 39 LYS n 1 40 THR n 1 41 LEU n 1 42 LEU n 1 43 ASP n 1 44 GLU n 1 45 TYR n 1 46 GLU n 1 47 LYS n 1 48 LEU n 1 49 THR n 1 50 ARG n 1 51 GLU n 1 52 ALA n 1 53 PHE n 1 54 SER n 1 55 ASN n 1 56 TYR n 1 57 ALA n 1 58 GLY n 1 59 LYS n 1 60 PRO n 1 61 TYR n 1 62 ARG n 1 63 PRO n 1 64 ILE n 1 65 ARG n 1 66 ASP n 1 67 ILE n 1 68 GLU n 1 69 GLU n 1 70 GLU n 1 71 VAL n 1 72 MSE n 1 73 ARG n 1 74 LYS n 1 75 LEU n 1 76 ALA n 1 77 GLU n 1 78 LYS n 1 79 TYR n 1 80 GLY n 1 81 PHE n 1 82 LYS n 1 83 TYR n 1 84 PRO n 1 85 GLU n 1 86 ASN n 1 87 PHE n 1 88 TRP n 1 89 GLU n 1 90 ILE n 1 91 HIS n 1 92 LEU n 1 93 ARG n 1 94 MSE n 1 95 HIS n 1 96 GLN n 1 97 ARG n 1 98 TYR n 1 99 GLY n 1 100 GLU n 1 101 LEU n 1 102 TYR n 1 103 PRO n 1 104 GLU n 1 105 VAL n 1 106 VAL n 1 107 GLU n 1 108 VAL n 1 109 LEU n 1 110 LYS n 1 111 SER n 1 112 LEU n 1 113 LYS n 1 114 GLY n 1 115 LYS n 1 116 TYR n 1 117 HIS n 1 118 VAL n 1 119 GLY n 1 120 MSE n 1 121 ILE n 1 122 THR n 1 123 ASP n 1 124 SER n 1 125 ASP n 1 126 THR n 1 127 GLU n 1 128 TYR n 1 129 LEU n 1 130 MSE n 1 131 ALA n 1 132 HIS n 1 133 LEU n 1 134 ASP n 1 135 ALA n 1 136 LEU n 1 137 GLY n 1 138 ILE n 1 139 LYS n 1 140 ASP n 1 141 LEU n 1 142 PHE n 1 143 ASP n 1 144 SER n 1 145 ILE n 1 146 THR n 1 147 THR n 1 148 SER n 1 149 GLU n 1 150 GLU n 1 151 ALA n 1 152 GLY n 1 153 PHE n 1 154 PHE n 1 155 LYS n 1 156 PRO n 1 157 HIS n 1 158 PRO n 1 159 ARG n 1 160 ILE n 1 161 PHE n 1 162 GLU n 1 163 LEU n 1 164 ALA n 1 165 LEU n 1 166 LYS n 1 167 LYS n 1 168 ALA n 1 169 GLY n 1 170 VAL n 1 171 LYS n 1 172 GLY n 1 173 GLU n 1 174 GLU n 1 175 ALA n 1 176 VAL n 1 177 TYR n 1 178 VAL n 1 179 GLY n 1 180 ASP n 1 181 ASN n 1 182 PRO n 1 183 VAL n 1 184 LYS n 1 185 ASP n 1 186 CYS n 1 187 GLY n 1 188 GLY n 1 189 SER n 1 190 LYS n 1 191 ASN n 1 192 LEU n 1 193 GLY n 1 194 MSE n 1 195 THR n 1 196 SER n 1 197 ILE n 1 198 LEU n 1 199 LEU n 1 200 ASP n 1 201 ARG n 1 202 LYS n 1 203 GLY n 1 204 GLU n 1 205 LYS n 1 206 ARG n 1 207 GLU n 1 208 PHE n 1 209 TRP n 1 210 ASP n 1 211 LYS n 1 212 CYS n 1 213 ASP n 1 214 PHE n 1 215 ILE n 1 216 VAL n 1 217 SER n 1 218 ASP n 1 219 LEU n 1 220 ARG n 1 221 GLU n 1 222 VAL n 1 223 ILE n 1 224 LYS n 1 225 ILE n 1 226 VAL n 1 227 ASP n 1 228 GLU n 1 229 LEU n 1 230 ASN n 1 231 GLY n 1 232 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Pyrococcus horikoshii' _entity_src_gen.gene_src_strain OT3 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus horikoshii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 70601 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus(DE3)-RIL-X' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O58216_PYRHO _struct_ref.pdbx_db_accession O58216 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIRAVFFDFVGTLLSVEGEAKTHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYRPIRDIEEEVMRKLAEKYG FKYPENFWEIHLRMHQRYGELYPEVVEVLKSLKGKYHVGMITDSDTEYLMAHLDALGIKDLFDSITTSEEAGFFKPHPRI FELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREVIKIVDELNGQ ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X42 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 232 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O58216 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 232 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 232 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X42 MSE A 1 ? UNP O58216 MET 1 'MODIFIED RESIDUE' 1 1 1 1X42 MSE A 27 ? UNP O58216 MET 27 'MODIFIED RESIDUE' 27 2 1 1X42 MSE A 72 ? UNP O58216 MET 72 'MODIFIED RESIDUE' 72 3 1 1X42 MSE A 94 ? UNP O58216 MET 94 'MODIFIED RESIDUE' 94 4 1 1X42 MSE A 120 ? UNP O58216 MET 120 'MODIFIED RESIDUE' 120 5 1 1X42 MSE A 130 ? UNP O58216 MET 130 'MODIFIED RESIDUE' 130 6 1 1X42 MSE A 194 ? UNP O58216 MET 194 'MODIFIED RESIDUE' 194 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1X42 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 49.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'Oil batch' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '0.1M Tris-HCl, 0.88M tri-Sodium Citrate, pH 7.0, Oil batch, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2004-10-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97890 1.0 2 0.97930 1.0 3 0.96000 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97890, 0.97930, 0.96000' # _reflns.entry_id 1X42 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.0 _reflns.number_obs 17044 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.089 _reflns.pdbx_netI_over_sigmaI 12.027 _reflns.B_iso_Wilson_estimate 6.0 _reflns.pdbx_redundancy 3.676 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.272 _reflns_shell.meanI_over_sigI_obs 4.996 _reflns_shell.pdbx_redundancy 3.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1682 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1X42 _refine.ls_number_reflns_obs 16891 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 976767.63 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.80 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 97.8 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.166 _refine.ls_R_factor_R_free 0.207 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 1691 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22.5 _refine.aniso_B[1][1] -0.90 _refine.aniso_B[2][2] -2.72 _refine.aniso_B[3][3] 3.62 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 1.29 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.37847 _refine.solvent_model_param_bsol 46.0682 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1X42 _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.10 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.23 _refine_analyze.Luzzati_sigma_a_free 0.18 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1869 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 150 _refine_hist.number_atoms_total 2019 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 42.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.95 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 4.75 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 5.17 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 7.18 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 9.55 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2336 _refine_ls_shell.R_factor_R_work 0.175 _refine_ls_shell.percent_reflns_obs 89.1 _refine_ls_shell.R_factor_R_free 0.234 _refine_ls_shell.R_factor_R_free_error 0.015 _refine_ls_shell.percent_reflns_R_free 9.4 _refine_ls_shell.number_reflns_R_free 242 _refine_ls_shell.number_reflns_obs 1933 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 1X42 _struct.title 'Crystal structure of a haloacid dehalogenase family protein (PH0459) from Pyrococcus horikoshii OT3' _struct.pdbx_descriptor 'hypothetical protein PH0459(E.C.3.8.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X42 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;haloacid dehalogenase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, hydrolase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 15 ? GLY A 32 ? SER A 15 GLY A 32 1 ? 18 HELX_P HELX_P2 2 ASN A 37 ? ALA A 57 ? ASN A 37 ALA A 57 1 ? 21 HELX_P HELX_P3 3 PRO A 63 ? GLY A 80 ? PRO A 63 GLY A 80 1 ? 18 HELX_P HELX_P4 4 ASN A 86 ? GLY A 99 ? ASN A 86 GLY A 99 1 ? 14 HELX_P HELX_P5 5 GLU A 104 ? LYS A 113 ? GLU A 104 LYS A 113 1 ? 10 HELX_P HELX_P6 6 ASP A 125 ? LEU A 136 ? ASP A 125 LEU A 136 1 ? 12 HELX_P HELX_P7 7 ILE A 138 ? PHE A 142 ? ILE A 138 PHE A 142 5 ? 5 HELX_P HELX_P8 8 SER A 148 ? GLY A 152 ? SER A 148 GLY A 152 1 ? 5 HELX_P HELX_P9 9 HIS A 157 ? GLY A 169 ? HIS A 157 GLY A 169 1 ? 13 HELX_P HELX_P10 10 LYS A 171 ? GLU A 173 ? LYS A 171 GLU A 173 5 ? 3 HELX_P HELX_P11 11 ASP A 185 ? ASN A 191 ? ASP A 185 ASN A 191 1 ? 7 HELX_P HELX_P12 12 LYS A 205 ? CYS A 212 ? LYS A 205 CYS A 212 5 ? 8 HELX_P HELX_P13 13 ARG A 220 ? ASN A 230 ? ARG A 220 ASN A 230 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 186 SG ? ? ? 1_555 A CYS 212 SG ? ? A CYS 186 A CYS 212 1_555 ? ? ? ? ? ? ? 2.092 ? covale1 covale ? ? A MSE 1 C ? ? ? 1_555 A ILE 2 N ? ? A MSE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale ? ? A ILE 26 C ? ? ? 1_555 A MSE 27 N ? ? A ILE 26 A MSE 27 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? A MSE 27 C ? ? ? 1_555 A GLU 28 N ? ? A MSE 27 A GLU 28 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A VAL 71 C ? ? ? 1_555 A MSE 72 N ? ? A VAL 71 A MSE 72 1_555 ? ? ? ? ? ? ? 1.333 ? covale5 covale ? ? A MSE 72 C ? ? ? 1_555 A ARG 73 N ? ? A MSE 72 A ARG 73 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale ? ? A ARG 93 C ? ? ? 1_555 A MSE 94 N ? ? A ARG 93 A MSE 94 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? A MSE 94 C ? ? ? 1_555 A HIS 95 N ? ? A MSE 94 A HIS 95 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? A GLY 119 C ? ? ? 1_555 A MSE 120 N ? ? A GLY 119 A MSE 120 1_555 ? ? ? ? ? ? ? 1.322 ? covale9 covale ? ? A MSE 120 C ? ? ? 1_555 A ILE 121 N ? ? A MSE 120 A ILE 121 1_555 ? ? ? ? ? ? ? 1.322 ? covale10 covale ? ? A LEU 129 C ? ? ? 1_555 A MSE 130 N ? ? A LEU 129 A MSE 130 1_555 ? ? ? ? ? ? ? 1.327 ? covale11 covale ? ? A MSE 130 C ? ? ? 1_555 A ALA 131 N ? ? A MSE 130 A ALA 131 1_555 ? ? ? ? ? ? ? 1.336 ? covale12 covale ? ? A GLY 193 C ? ? ? 1_555 A MSE 194 N ? ? A GLY 193 A MSE 194 1_555 ? ? ? ? ? ? ? 1.324 ? covale13 covale ? ? A MSE 194 C ? ? ? 1_555 A THR 195 N ? ? A MSE 194 A THR 195 1_555 ? ? ? ? ? ? ? 1.334 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 155 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 155 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 156 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 156 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.13 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 144 ? THR A 147 ? SER A 144 THR A 147 A 2 HIS A 117 ? THR A 122 ? HIS A 117 THR A 122 A 3 ALA A 4 ? PHE A 7 ? ALA A 4 PHE A 7 A 4 ALA A 175 ? GLY A 179 ? ALA A 175 GLY A 179 A 5 THR A 195 ? LEU A 199 ? THR A 195 LEU A 199 A 6 PHE A 214 ? VAL A 216 ? PHE A 214 VAL A 216 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 146 ? O THR A 146 N MSE A 120 ? N MSE A 120 A 2 3 O HIS A 117 ? O HIS A 117 N VAL A 5 ? N VAL A 5 A 3 4 N PHE A 6 ? N PHE A 6 O VAL A 176 ? O VAL A 176 A 4 5 N GLY A 179 ? N GLY A 179 O LEU A 199 ? O LEU A 199 A 5 6 N LEU A 198 ? N LEU A 198 O PHE A 214 ? O PHE A 214 # _database_PDB_matrix.entry_id 1X42 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X42 _atom_sites.fract_transf_matrix[1][1] 0.029314 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001800 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014031 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018687 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 HIS 23 23 23 HIS HIS A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 MSE 27 27 27 MSE MSE A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 MSE 72 72 72 MSE MSE A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 TRP 88 88 88 TRP TRP A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 MSE 94 94 94 MSE MSE A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 HIS 117 117 117 HIS HIS A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 MSE 120 120 120 MSE MSE A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 THR 126 126 126 THR THR A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 TYR 128 128 128 TYR TYR A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 MSE 130 130 130 MSE MSE A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 HIS 132 132 132 HIS HIS A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 ASP 143 143 143 ASP ASP A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 ILE 145 145 145 ILE ILE A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 PHE 153 153 153 PHE PHE A . n A 1 154 PHE 154 154 154 PHE PHE A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 PRO 156 156 156 PRO PRO A . n A 1 157 HIS 157 157 157 HIS HIS A . n A 1 158 PRO 158 158 158 PRO PRO A . n A 1 159 ARG 159 159 159 ARG ARG A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 PHE 161 161 161 PHE PHE A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 LYS 166 166 166 LYS LYS A . n A 1 167 LYS 167 167 167 LYS LYS A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 GLU 174 174 174 GLU GLU A . n A 1 175 ALA 175 175 175 ALA ALA A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 ASP 180 180 180 ASP ASP A . n A 1 181 ASN 181 181 181 ASN ASN A . n A 1 182 PRO 182 182 182 PRO PRO A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 LYS 184 184 184 LYS LYS A . n A 1 185 ASP 185 185 185 ASP ASP A . n A 1 186 CYS 186 186 186 CYS CYS A . n A 1 187 GLY 187 187 187 GLY GLY A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 SER 189 189 189 SER SER A . n A 1 190 LYS 190 190 190 LYS LYS A . n A 1 191 ASN 191 191 191 ASN ASN A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 GLY 193 193 193 GLY GLY A . n A 1 194 MSE 194 194 194 MSE MSE A . n A 1 195 THR 195 195 195 THR THR A . n A 1 196 SER 196 196 196 SER SER A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 LEU 199 199 199 LEU LEU A . n A 1 200 ASP 200 200 200 ASP ASP A . n A 1 201 ARG 201 201 201 ARG ARG A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 GLY 203 203 203 GLY GLY A . n A 1 204 GLU 204 204 204 GLU GLU A . n A 1 205 LYS 205 205 205 LYS LYS A . n A 1 206 ARG 206 206 206 ARG ARG A . n A 1 207 GLU 207 207 207 GLU GLU A . n A 1 208 PHE 208 208 208 PHE PHE A . n A 1 209 TRP 209 209 209 TRP TRP A . n A 1 210 ASP 210 210 210 ASP ASP A . n A 1 211 LYS 211 211 211 LYS LYS A . n A 1 212 CYS 212 212 212 CYS CYS A . n A 1 213 ASP 213 213 213 ASP ASP A . n A 1 214 PHE 214 214 214 PHE PHE A . n A 1 215 ILE 215 215 215 ILE ILE A . n A 1 216 VAL 216 216 216 VAL VAL A . n A 1 217 SER 217 217 217 SER SER A . n A 1 218 ASP 218 218 218 ASP ASP A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 ARG 220 220 220 ARG ARG A . n A 1 221 GLU 221 221 221 GLU GLU A . n A 1 222 VAL 222 222 222 VAL VAL A . n A 1 223 ILE 223 223 223 ILE ILE A . n A 1 224 LYS 224 224 224 LYS LYS A . n A 1 225 ILE 225 225 225 ILE ILE A . n A 1 226 VAL 226 226 226 VAL VAL A . n A 1 227 ASP 227 227 227 ASP ASP A . n A 1 228 GLU 228 228 228 GLU GLU A . n A 1 229 LEU 229 229 229 LEU LEU A . n A 1 230 ASN 230 230 230 ASN ASN A . n A 1 231 GLY 231 231 ? ? ? A . n A 1 232 GLN 232 232 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 233 1 HOH HOH A . B 2 HOH 2 234 2 HOH HOH A . B 2 HOH 3 235 3 HOH HOH A . B 2 HOH 4 236 4 HOH HOH A . B 2 HOH 5 237 5 HOH HOH A . B 2 HOH 6 238 6 HOH HOH A . B 2 HOH 7 239 7 HOH HOH A . B 2 HOH 8 240 8 HOH HOH A . B 2 HOH 9 241 9 HOH HOH A . B 2 HOH 10 242 10 HOH HOH A . B 2 HOH 11 243 11 HOH HOH A . B 2 HOH 12 244 12 HOH HOH A . B 2 HOH 13 245 13 HOH HOH A . B 2 HOH 14 246 14 HOH HOH A . B 2 HOH 15 247 15 HOH HOH A . B 2 HOH 16 248 16 HOH HOH A . B 2 HOH 17 249 17 HOH HOH A . B 2 HOH 18 250 18 HOH HOH A . B 2 HOH 19 251 19 HOH HOH A . B 2 HOH 20 252 20 HOH HOH A . B 2 HOH 21 253 21 HOH HOH A . B 2 HOH 22 254 22 HOH HOH A . B 2 HOH 23 255 23 HOH HOH A . B 2 HOH 24 256 24 HOH HOH A . B 2 HOH 25 257 25 HOH HOH A . B 2 HOH 26 258 26 HOH HOH A . B 2 HOH 27 259 27 HOH HOH A . B 2 HOH 28 260 28 HOH HOH A . B 2 HOH 29 261 29 HOH HOH A . B 2 HOH 30 262 30 HOH HOH A . B 2 HOH 31 263 31 HOH HOH A . B 2 HOH 32 264 32 HOH HOH A . B 2 HOH 33 265 33 HOH HOH A . B 2 HOH 34 266 34 HOH HOH A . B 2 HOH 35 267 35 HOH HOH A . B 2 HOH 36 268 36 HOH HOH A . B 2 HOH 37 269 37 HOH HOH A . B 2 HOH 38 270 38 HOH HOH A . B 2 HOH 39 271 39 HOH HOH A . B 2 HOH 40 272 40 HOH HOH A . B 2 HOH 41 273 41 HOH HOH A . B 2 HOH 42 274 42 HOH HOH A . B 2 HOH 43 275 43 HOH HOH A . B 2 HOH 44 276 44 HOH HOH A . B 2 HOH 45 277 45 HOH HOH A . B 2 HOH 46 278 46 HOH HOH A . B 2 HOH 47 279 47 HOH HOH A . B 2 HOH 48 280 48 HOH HOH A . B 2 HOH 49 281 49 HOH HOH A . B 2 HOH 50 282 50 HOH HOH A . B 2 HOH 51 283 51 HOH HOH A . B 2 HOH 52 284 52 HOH HOH A . B 2 HOH 53 285 53 HOH HOH A . B 2 HOH 54 286 54 HOH HOH A . B 2 HOH 55 287 55 HOH HOH A . B 2 HOH 56 288 56 HOH HOH A . B 2 HOH 57 289 57 HOH HOH A . B 2 HOH 58 290 58 HOH HOH A . B 2 HOH 59 291 59 HOH HOH A . B 2 HOH 60 292 60 HOH HOH A . B 2 HOH 61 293 61 HOH HOH A . B 2 HOH 62 294 62 HOH HOH A . B 2 HOH 63 295 63 HOH HOH A . B 2 HOH 64 296 64 HOH HOH A . B 2 HOH 65 297 65 HOH HOH A . B 2 HOH 66 298 66 HOH HOH A . B 2 HOH 67 299 67 HOH HOH A . B 2 HOH 68 300 68 HOH HOH A . B 2 HOH 69 301 69 HOH HOH A . B 2 HOH 70 302 70 HOH HOH A . B 2 HOH 71 303 71 HOH HOH A . B 2 HOH 72 304 72 HOH HOH A . B 2 HOH 73 305 73 HOH HOH A . B 2 HOH 74 306 74 HOH HOH A . B 2 HOH 75 307 75 HOH HOH A . B 2 HOH 76 308 76 HOH HOH A . B 2 HOH 77 309 77 HOH HOH A . B 2 HOH 78 310 78 HOH HOH A . B 2 HOH 79 311 79 HOH HOH A . B 2 HOH 80 312 80 HOH HOH A . B 2 HOH 81 313 81 HOH HOH A . B 2 HOH 82 314 82 HOH HOH A . B 2 HOH 83 315 83 HOH HOH A . B 2 HOH 84 316 84 HOH HOH A . B 2 HOH 85 317 85 HOH HOH A . B 2 HOH 86 318 86 HOH HOH A . B 2 HOH 87 319 87 HOH HOH A . B 2 HOH 88 320 88 HOH HOH A . B 2 HOH 89 321 89 HOH HOH A . B 2 HOH 90 322 90 HOH HOH A . B 2 HOH 91 323 91 HOH HOH A . B 2 HOH 92 324 92 HOH HOH A . B 2 HOH 93 325 93 HOH HOH A . B 2 HOH 94 326 94 HOH HOH A . B 2 HOH 95 327 95 HOH HOH A . B 2 HOH 96 328 96 HOH HOH A . B 2 HOH 97 329 97 HOH HOH A . B 2 HOH 98 330 98 HOH HOH A . B 2 HOH 99 331 99 HOH HOH A . B 2 HOH 100 332 100 HOH HOH A . B 2 HOH 101 333 101 HOH HOH A . B 2 HOH 102 334 102 HOH HOH A . B 2 HOH 103 335 103 HOH HOH A . B 2 HOH 104 336 104 HOH HOH A . B 2 HOH 105 337 105 HOH HOH A . B 2 HOH 106 338 106 HOH HOH A . B 2 HOH 107 339 107 HOH HOH A . B 2 HOH 108 340 108 HOH HOH A . B 2 HOH 109 341 109 HOH HOH A . B 2 HOH 110 342 110 HOH HOH A . B 2 HOH 111 343 111 HOH HOH A . B 2 HOH 112 344 112 HOH HOH A . B 2 HOH 113 345 113 HOH HOH A . B 2 HOH 114 346 114 HOH HOH A . B 2 HOH 115 347 115 HOH HOH A . B 2 HOH 116 348 116 HOH HOH A . B 2 HOH 117 349 117 HOH HOH A . B 2 HOH 118 350 118 HOH HOH A . B 2 HOH 119 351 119 HOH HOH A . B 2 HOH 120 352 120 HOH HOH A . B 2 HOH 121 353 121 HOH HOH A . B 2 HOH 122 354 122 HOH HOH A . B 2 HOH 123 355 123 HOH HOH A . B 2 HOH 124 356 124 HOH HOH A . B 2 HOH 125 357 125 HOH HOH A . B 2 HOH 126 358 126 HOH HOH A . B 2 HOH 127 359 127 HOH HOH A . B 2 HOH 128 360 128 HOH HOH A . B 2 HOH 129 361 129 HOH HOH A . B 2 HOH 130 362 130 HOH HOH A . B 2 HOH 131 363 131 HOH HOH A . B 2 HOH 132 364 132 HOH HOH A . B 2 HOH 133 365 133 HOH HOH A . B 2 HOH 134 366 134 HOH HOH A . B 2 HOH 135 367 135 HOH HOH A . B 2 HOH 136 368 136 HOH HOH A . B 2 HOH 137 369 137 HOH HOH A . B 2 HOH 138 370 138 HOH HOH A . B 2 HOH 139 371 139 HOH HOH A . B 2 HOH 140 372 140 HOH HOH A . B 2 HOH 141 373 141 HOH HOH A . B 2 HOH 142 374 142 HOH HOH A . B 2 HOH 143 375 143 HOH HOH A . B 2 HOH 144 376 144 HOH HOH A . B 2 HOH 145 377 145 HOH HOH A . B 2 HOH 146 378 146 HOH HOH A . B 2 HOH 147 379 147 HOH HOH A . B 2 HOH 148 380 148 HOH HOH A . B 2 HOH 149 381 149 HOH HOH A . B 2 HOH 150 382 150 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 27 A MSE 27 ? MET SELENOMETHIONINE 3 A MSE 72 A MSE 72 ? MET SELENOMETHIONINE 4 A MSE 94 A MSE 94 ? MET SELENOMETHIONINE 5 A MSE 120 A MSE 120 ? MET SELENOMETHIONINE 6 A MSE 130 A MSE 130 ? MET SELENOMETHIONINE 7 A MSE 194 A MSE 194 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-12 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 19 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 19 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.641 _pdbx_validate_rmsd_bond.bond_target_value 1.517 _pdbx_validate_rmsd_bond.bond_deviation 0.124 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 9 ? ? -108.06 -72.05 2 1 PRO A 35 ? ? -70.69 45.88 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 231 ? A GLY 231 2 1 Y 1 A GLN 232 ? A GLN 232 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #