data_1X4Y # _entry.id 1X4Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X4Y pdb_00001x4y 10.2210/pdb1x4y/pdb RCSB RCSB024384 ? ? WWPDB D_1000024384 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt008000800.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X4Y _pdbx_database_status.recvd_initial_deposition_date 2005-05-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomizawa, T.' 1 'Kigawa, T.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title ;Solution structure of the 3rd fibronectin type III domain from mouse biregional cell adhesion molecule-related/down-regulated oncogenes (Cdon) binding protein ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tomizawa, T.' 1 ? primary 'Kigawa, T.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'biregional cell adhesion molecule-related/down-regulated oncogenes (Cdon)binding protein' _entity.formula_weight 12735.913 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'fibronectin type III (fn3) domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPET SYDIKMQCFNEGGESEFSNVMICETKARSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPET SYDIKMQCFNEGGESEFSNVMICETKARSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt008000800.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 VAL n 1 10 ALA n 1 11 GLY n 1 12 PRO n 1 13 TYR n 1 14 ILE n 1 15 THR n 1 16 PHE n 1 17 THR n 1 18 ASP n 1 19 ALA n 1 20 VAL n 1 21 ASN n 1 22 GLU n 1 23 THR n 1 24 THR n 1 25 ILE n 1 26 MET n 1 27 LEU n 1 28 LYS n 1 29 TRP n 1 30 MET n 1 31 TYR n 1 32 ILE n 1 33 PRO n 1 34 ALA n 1 35 SER n 1 36 ASN n 1 37 ASN n 1 38 ASN n 1 39 THR n 1 40 PRO n 1 41 ILE n 1 42 HIS n 1 43 GLY n 1 44 PHE n 1 45 TYR n 1 46 ILE n 1 47 TYR n 1 48 TYR n 1 49 ARG n 1 50 PRO n 1 51 THR n 1 52 ASP n 1 53 SER n 1 54 ASP n 1 55 ASN n 1 56 ASP n 1 57 SER n 1 58 ASP n 1 59 TYR n 1 60 LYS n 1 61 LYS n 1 62 ASP n 1 63 MET n 1 64 VAL n 1 65 GLU n 1 66 GLY n 1 67 ASP n 1 68 ARG n 1 69 TYR n 1 70 TRP n 1 71 HIS n 1 72 SER n 1 73 ILE n 1 74 SER n 1 75 HIS n 1 76 LEU n 1 77 GLN n 1 78 PRO n 1 79 GLU n 1 80 THR n 1 81 SER n 1 82 TYR n 1 83 ASP n 1 84 ILE n 1 85 LYS n 1 86 MET n 1 87 GLN n 1 88 CYS n 1 89 PHE n 1 90 ASN n 1 91 GLU n 1 92 GLY n 1 93 GLY n 1 94 GLU n 1 95 SER n 1 96 GLU n 1 97 PHE n 1 98 SER n 1 99 ASN n 1 100 VAL n 1 101 MET n 1 102 ILE n 1 103 CYS n 1 104 GLU n 1 105 THR n 1 106 LYS n 1 107 ALA n 1 108 ARG n 1 109 SER n 1 110 GLY n 1 111 PRO n 1 112 SER n 1 113 SER n 1 114 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene Boc _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040719-12 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7TMJ3_MOUSE _struct_ref.pdbx_db_accession Q7TMJ3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQ CFNEGGESEFSNVMICETKAR ; _struct_ref.pdbx_align_begin 707 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X4Y _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 108 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7TMJ3 _struct_ref_seq.db_align_beg 707 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 807 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 108 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X4Y GLY A 1 ? UNP Q7TMJ3 ? ? 'cloning artifact' 1 1 1 1X4Y SER A 2 ? UNP Q7TMJ3 ? ? 'cloning artifact' 2 2 1 1X4Y SER A 3 ? UNP Q7TMJ3 ? ? 'cloning artifact' 3 3 1 1X4Y GLY A 4 ? UNP Q7TMJ3 ? ? 'cloning artifact' 4 4 1 1X4Y SER A 5 ? UNP Q7TMJ3 ? ? 'cloning artifact' 5 5 1 1X4Y SER A 6 ? UNP Q7TMJ3 ? ? 'cloning artifact' 6 6 1 1X4Y GLY A 7 ? UNP Q7TMJ3 ? ? 'cloning artifact' 7 7 1 1X4Y SER A 109 ? UNP Q7TMJ3 ? ? 'cloning artifact' 109 8 1 1X4Y GLY A 110 ? UNP Q7TMJ3 ? ? 'cloning artifact' 110 9 1 1X4Y PRO A 111 ? UNP Q7TMJ3 ? ? 'cloning artifact' 111 10 1 1X4Y SER A 112 ? UNP Q7TMJ3 ? ? 'cloning artifact' 112 11 1 1X4Y SER A 113 ? UNP Q7TMJ3 ? ? 'cloning artifact' 113 12 1 1X4Y GLY A 114 ? UNP Q7TMJ3 ? ? 'cloning artifact' 114 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.84mM fn3 domain U-15N, 13C; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X4Y _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1X4Y _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X4Y _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 1X4Y _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X4Y _struct.title ;Solution structure of the 3rd fibronectin type III domain from mouse biregional cell adhesion molecule-related/down-regulated oncogenes (Cdon) binding protein ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X4Y _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text ;fibronectin type III, fn3, immunoglobulin-like beta-sandwich fold, cell adhesion, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 55 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id TYR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 59 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 55 _struct_conf.end_auth_comp_id TYR _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 59 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 13 ? ASP A 18 ? TYR A 13 ASP A 18 A 2 ILE A 25 ? MET A 30 ? ILE A 25 MET A 30 A 3 TRP A 70 ? ILE A 73 ? TRP A 70 ILE A 73 B 1 ASP A 62 ? GLU A 65 ? ASP A 62 GLU A 65 B 2 GLY A 43 ? TYR A 48 ? GLY A 43 TYR A 48 B 3 SER A 81 ? PHE A 89 ? SER A 81 PHE A 89 B 4 MET A 101 ? GLU A 104 ? MET A 101 GLU A 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 18 ? N ASP A 18 O MET A 26 ? O MET A 26 A 2 3 N ILE A 25 ? N ILE A 25 O ILE A 73 ? O ILE A 73 B 1 2 O ASP A 62 ? O ASP A 62 N ILE A 46 ? N ILE A 46 B 2 3 N TYR A 45 ? N TYR A 45 O GLN A 87 ? O GLN A 87 B 3 4 N ILE A 84 ? N ILE A 84 O MET A 101 ? O MET A 101 # _database_PDB_matrix.entry_id 1X4Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X4Y _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 MET 26 26 26 MET MET A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 TRP 29 29 29 TRP TRP A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 HIS 42 42 42 HIS HIS A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 MET 63 63 63 MET MET A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 TRP 70 70 70 TRP TRP A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 HIS 75 75 75 HIS HIS A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 CYS 88 88 88 CYS CYS A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 MET 101 101 101 MET MET A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 CYS 103 103 103 CYS CYS A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 GLY 114 114 114 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 10 ? ? -35.50 -39.60 2 1 SER A 35 ? ? -92.11 41.54 3 1 ASN A 37 ? ? -97.34 32.26 4 1 ASN A 38 ? ? 37.53 44.86 5 1 ARG A 49 ? ? -174.69 143.10 6 1 SER A 53 ? ? -52.84 175.18 7 1 TYR A 59 ? ? -35.30 124.42 8 1 GLU A 65 ? ? -39.49 142.14 9 1 GLU A 79 ? ? 34.90 43.50 10 1 GLU A 91 ? ? -35.04 -39.96 11 1 SER A 98 ? ? -51.72 -177.69 12 1 THR A 105 ? ? -67.11 -177.03 13 2 ALA A 34 ? ? -52.12 -71.87 14 2 SER A 35 ? ? -85.86 38.58 15 2 ARG A 49 ? ? -175.04 142.72 16 2 SER A 53 ? ? -55.54 -175.24 17 2 GLU A 65 ? ? -39.60 147.71 18 2 GLU A 79 ? ? 33.92 39.88 19 2 GLU A 91 ? ? -38.31 -39.01 20 3 SER A 2 ? ? -50.68 173.10 21 3 SER A 35 ? ? -89.74 41.36 22 3 ASN A 37 ? ? -90.71 30.46 23 3 ASN A 38 ? ? 39.22 38.87 24 3 ARG A 49 ? ? -173.44 142.96 25 3 SER A 53 ? ? -41.88 152.36 26 3 SER A 57 ? ? -48.58 -19.25 27 3 TYR A 59 ? ? -39.17 123.30 28 3 GLU A 79 ? ? 34.09 33.81 29 4 SER A 5 ? ? -172.00 133.32 30 4 ALA A 34 ? ? -50.38 -72.49 31 4 SER A 53 ? ? -41.02 162.74 32 4 TYR A 59 ? ? -39.15 123.16 33 4 GLU A 79 ? ? 34.34 43.06 34 4 SER A 98 ? ? -59.18 -175.10 35 5 PHE A 16 ? ? -160.55 118.17 36 5 SER A 35 ? ? 38.57 44.18 37 5 ASN A 38 ? ? 39.92 33.79 38 5 SER A 53 ? ? -34.84 150.95 39 5 TYR A 59 ? ? -35.83 120.15 40 5 GLU A 79 ? ? 34.11 43.77 41 5 SER A 98 ? ? -55.53 178.94 42 5 THR A 105 ? ? -60.97 -179.65 43 6 ALA A 10 ? ? -39.33 -36.88 44 6 PHE A 16 ? ? -160.44 119.05 45 6 SER A 35 ? ? -89.71 39.37 46 6 ASN A 37 ? ? -91.55 33.11 47 6 ASN A 38 ? ? 37.06 41.37 48 6 SER A 57 ? ? -47.74 -19.91 49 6 GLU A 65 ? ? -39.11 143.40 50 6 GLU A 79 ? ? 34.32 39.26 51 6 GLU A 91 ? ? -37.93 -33.00 52 6 GLU A 94 ? ? -47.40 153.36 53 6 ARG A 108 ? ? -82.08 40.90 54 6 SER A 109 ? ? -47.14 101.25 55 6 SER A 112 ? ? -171.41 133.10 56 7 SER A 35 ? ? -88.87 40.45 57 7 SER A 53 ? ? -43.89 168.13 58 7 ASP A 54 ? ? -92.16 -61.73 59 7 TYR A 59 ? ? -35.08 119.05 60 7 GLU A 79 ? ? 34.46 37.54 61 7 GLU A 96 ? ? -44.81 158.85 62 7 SER A 98 ? ? -46.51 171.94 63 8 SER A 3 ? ? -105.74 42.47 64 8 SER A 35 ? ? -87.86 45.69 65 8 ASN A 37 ? ? -92.62 31.65 66 8 ASN A 38 ? ? 37.87 41.48 67 8 SER A 53 ? ? -51.05 -176.60 68 8 TYR A 59 ? ? -36.48 120.55 69 8 GLU A 79 ? ? 34.18 40.21 70 8 ASN A 99 ? ? -57.71 175.14 71 8 THR A 105 ? ? -67.29 -179.15 72 9 VAL A 9 ? ? -130.04 -39.99 73 9 ALA A 10 ? ? -38.41 -36.60 74 9 SER A 35 ? ? -75.78 48.81 75 9 ARG A 49 ? ? -171.66 142.79 76 9 SER A 53 ? ? -39.13 153.55 77 9 TYR A 59 ? ? -37.14 126.73 78 9 GLU A 79 ? ? 33.75 44.04 79 9 SER A 98 ? ? -53.83 174.06 80 9 ARG A 108 ? ? -60.05 89.49 81 9 PRO A 111 ? ? -69.72 1.33 82 10 SER A 35 ? ? -94.42 37.66 83 10 ASN A 37 ? ? -94.02 32.63 84 10 ASN A 38 ? ? 36.27 44.26 85 10 SER A 53 ? ? -46.91 151.40 86 10 TYR A 59 ? ? -34.92 121.46 87 10 GLU A 79 ? ? 34.25 42.32 88 10 GLU A 91 ? ? -36.51 -38.80 89 11 SER A 5 ? ? -50.49 173.71 90 11 ALA A 34 ? ? -49.48 -74.01 91 11 SER A 35 ? ? -83.62 45.46 92 11 SER A 53 ? ? -35.54 150.69 93 11 TYR A 59 ? ? -34.96 122.17 94 11 GLU A 79 ? ? 33.72 38.76 95 11 ASN A 90 ? ? -170.04 -177.84 96 11 SER A 98 ? ? -54.12 -175.07 97 12 ALA A 10 ? ? -33.03 -37.69 98 12 ALA A 34 ? ? -59.56 -72.92 99 12 SER A 35 ? ? -83.08 40.90 100 12 ARG A 49 ? ? -172.91 141.60 101 12 SER A 53 ? ? -52.31 -179.41 102 12 ASP A 54 ? ? -94.66 -60.39 103 12 ASP A 56 ? ? -49.82 -18.71 104 12 TYR A 59 ? ? -35.54 121.71 105 12 GLU A 79 ? ? 33.76 37.28 106 12 GLU A 91 ? ? -36.41 -33.56 107 12 ARG A 108 ? ? -64.65 73.81 108 13 SER A 35 ? ? -87.27 43.27 109 13 SER A 53 ? ? -46.12 168.98 110 13 ASP A 54 ? ? -105.22 -63.85 111 13 TYR A 59 ? ? -39.82 121.99 112 13 GLU A 65 ? ? -42.10 153.01 113 13 GLU A 79 ? ? 34.10 40.95 114 13 SER A 98 ? ? -49.41 179.39 115 14 SER A 2 ? ? -129.01 -50.22 116 14 SER A 5 ? ? -83.36 37.37 117 14 SER A 6 ? ? -41.50 104.66 118 14 ALA A 10 ? ? -39.36 -36.63 119 14 ALA A 34 ? ? -38.23 -73.26 120 14 SER A 35 ? ? -88.22 49.80 121 14 ASN A 37 ? ? -89.70 30.89 122 14 ASN A 38 ? ? 37.80 41.43 123 14 SER A 53 ? ? -49.45 178.15 124 14 TYR A 59 ? ? -36.75 119.74 125 14 GLU A 65 ? ? -35.07 151.11 126 14 GLU A 79 ? ? 34.08 44.68 127 14 GLU A 91 ? ? -34.54 -35.50 128 14 SER A 98 ? ? -59.35 176.84 129 14 THR A 105 ? ? -65.15 -177.78 130 15 SER A 3 ? ? 72.66 40.72 131 15 ALA A 10 ? ? -36.61 -33.95 132 15 SER A 35 ? ? -92.10 39.82 133 15 ASN A 37 ? ? -92.22 32.98 134 15 ASN A 38 ? ? 35.95 45.79 135 15 SER A 53 ? ? -46.07 172.37 136 15 TYR A 59 ? ? -34.33 120.41 137 15 GLU A 79 ? ? 34.45 44.92 138 15 GLU A 91 ? ? -39.37 -37.14 139 15 ASN A 99 ? ? -57.14 175.04 140 15 PRO A 111 ? ? -69.79 -175.35 141 16 VAL A 9 ? ? -132.67 -40.42 142 16 ALA A 34 ? ? -71.88 -73.58 143 16 SER A 53 ? ? -53.09 178.18 144 16 TYR A 59 ? ? -38.65 121.23 145 16 GLU A 79 ? ? 33.18 41.96 146 16 SER A 98 ? ? -45.20 167.86 147 16 THR A 105 ? ? -65.88 -179.32 148 16 ARG A 108 ? ? -84.72 33.00 149 16 SER A 112 ? ? -38.56 144.83 150 17 SER A 5 ? ? -67.07 91.82 151 17 ALA A 10 ? ? -34.85 -35.12 152 17 SER A 53 ? ? -58.09 -179.48 153 17 TYR A 59 ? ? -34.54 127.97 154 17 GLU A 79 ? ? 34.85 42.26 155 17 GLU A 91 ? ? -35.94 -37.71 156 17 SER A 98 ? ? -65.46 -178.91 157 17 ARG A 108 ? ? -64.79 99.88 158 18 SER A 2 ? ? -48.66 104.98 159 18 ALA A 10 ? ? -39.29 -38.86 160 18 SER A 35 ? ? -85.62 38.97 161 18 ARG A 49 ? ? -171.81 142.15 162 18 SER A 53 ? ? -61.50 -175.11 163 18 TYR A 59 ? ? -35.43 120.43 164 18 GLU A 79 ? ? 35.07 35.89 165 18 GLU A 91 ? ? -38.27 -35.13 166 18 SER A 98 ? ? -56.22 174.92 167 19 VAL A 9 ? ? -132.50 -38.45 168 19 ALA A 34 ? ? -34.23 -75.10 169 19 ARG A 49 ? ? -174.53 139.55 170 19 SER A 53 ? ? -51.23 176.76 171 19 TYR A 59 ? ? -34.50 129.64 172 19 GLU A 79 ? ? 33.48 44.38 173 19 GLU A 91 ? ? -36.90 -33.47 174 19 ASN A 99 ? ? -56.04 179.03 175 19 SER A 112 ? ? -38.78 135.81 176 20 ALA A 34 ? ? -44.57 -70.78 177 20 SER A 35 ? ? -86.62 49.25 178 20 ARG A 49 ? ? -174.98 140.83 179 20 SER A 53 ? ? -44.50 169.29 180 20 TYR A 59 ? ? -39.25 122.90 181 20 GLU A 65 ? ? -47.17 155.50 182 20 GLU A 79 ? ? 38.82 41.82 183 20 SER A 98 ? ? -54.36 173.45 184 20 ARG A 108 ? ? -57.59 102.88 185 20 PRO A 111 ? ? -69.75 1.79 186 20 SER A 112 ? ? -35.60 -39.20 #