HEADER CELL ADHESION, CELL CYCLE 16-MAY-05 1X5Q TITLE SOLUTION STRUCTURE OF THE FIRST PDZ DOMAIN OF SCRIBBLE HOMOLOG PROTEIN TITLE 2 (HSCRIB) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAP4 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: SCRIBBLE HOMOLOG PROTEIN, HSCRIB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SCRIB, CRIB1, KIAA0147, LAP4, SCRB1, VARTUL; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040628-05; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, LAP4 PROTEIN, SCRIBBLE HOMOLOG PROTEIN, HSCRIB, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, CELL ADHESION, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1X5Q 1 REMARK SEQADV REVDAT 2 24-FEB-09 1X5Q 1 VERSN REVDAT 1 16-NOV-05 1X5Q 0 JRNL AUTH X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST PDZ DOMAIN OF SCRIBBLE JRNL TITL 2 HOMOLOG PROTEIN (HSCRIB) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X5Q COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024412. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.20MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9296, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ILE A 21 O VAL A 97 1.50 REMARK 500 H GLU A 15 O ARG A 103 1.51 REMARK 500 O SER A 31 H SER A 51 1.53 REMARK 500 H LEU A 71 O ARG A 100 1.54 REMARK 500 O ILE A 21 H VAL A 97 1.56 REMARK 500 O HIS A 84 H GLU A 88 1.57 REMARK 500 H ASN A 74 O GLN A 98 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 -58.33 -127.90 REMARK 500 1 GLU A 8 88.13 49.33 REMARK 500 1 GLU A 13 138.52 -176.91 REMARK 500 1 GLU A 14 147.71 -38.17 REMARK 500 1 GLU A 56 72.64 -105.09 REMARK 500 1 ALA A 93 135.77 -174.58 REMARK 500 1 THR A 95 -78.11 -38.20 REMARK 500 1 SER A 105 103.30 -49.82 REMARK 500 1 SER A 109 -79.42 62.82 REMARK 500 2 ALA A 10 171.12 -58.38 REMARK 500 2 GLU A 13 138.95 -176.62 REMARK 500 2 GLU A 14 155.11 -38.58 REMARK 500 2 GLN A 24 73.22 -112.20 REMARK 500 2 THR A 25 46.15 36.22 REMARK 500 2 ALA A 33 112.28 -160.15 REMARK 500 2 LYS A 42 -80.53 -104.83 REMARK 500 2 GLU A 56 42.14 -107.34 REMARK 500 2 GLN A 79 -84.05 -38.77 REMARK 500 2 THR A 95 -78.64 -41.19 REMARK 500 2 SER A 108 91.55 47.99 REMARK 500 2 SER A 109 157.97 66.27 REMARK 500 3 SER A 3 108.07 -176.67 REMARK 500 3 GLU A 13 130.22 -170.32 REMARK 500 3 GLU A 14 146.93 -38.77 REMARK 500 3 GLN A 24 116.00 171.19 REMARK 500 3 THR A 25 44.01 38.85 REMARK 500 3 LEU A 28 -179.68 73.49 REMARK 500 3 SER A 38 165.62 177.01 REMARK 500 3 LYS A 42 -84.40 -103.50 REMARK 500 3 GLU A 46 46.93 -91.05 REMARK 500 3 SER A 54 109.57 -53.40 REMARK 500 3 GLU A 56 42.29 -98.32 REMARK 500 3 THR A 95 -81.72 -39.91 REMARK 500 4 GLU A 14 145.49 -37.17 REMARK 500 4 GLN A 24 -55.13 -134.09 REMARK 500 4 LEU A 28 174.71 53.00 REMARK 500 4 LYS A 36 -107.19 -73.31 REMARK 500 4 LYS A 42 -71.88 -108.03 REMARK 500 4 SER A 54 107.36 -49.65 REMARK 500 4 GLU A 56 37.79 -96.62 REMARK 500 4 THR A 95 -81.69 -38.35 REMARK 500 5 SER A 6 159.78 -41.63 REMARK 500 5 GLU A 8 108.09 -163.80 REMARK 500 5 GLU A 13 134.92 -176.98 REMARK 500 5 GLN A 24 -59.00 -171.04 REMARK 500 5 LEU A 28 177.89 59.83 REMARK 500 5 ALA A 33 118.26 -166.35 REMARK 500 5 SER A 54 107.41 -49.82 REMARK 500 5 GLU A 56 50.25 -94.17 REMARK 500 5 LEU A 78 35.66 -92.50 REMARK 500 REMARK 500 THIS ENTRY HAS 218 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002300144.1 RELATED DB: TARGETDB DBREF 1X5Q A 8 104 UNP Q14160 LAP4_HUMAN 718 814 SEQADV 1X5Q GLY A 1 UNP Q14160 CLONING ARTIFACT SEQADV 1X5Q SER A 2 UNP Q14160 CLONING ARTIFACT SEQADV 1X5Q SER A 3 UNP Q14160 CLONING ARTIFACT SEQADV 1X5Q GLY A 4 UNP Q14160 CLONING ARTIFACT SEQADV 1X5Q SER A 5 UNP Q14160 CLONING ARTIFACT SEQADV 1X5Q SER A 6 UNP Q14160 CLONING ARTIFACT SEQADV 1X5Q GLY A 7 UNP Q14160 CLONING ARTIFACT SEQADV 1X5Q SER A 105 UNP Q14160 CLONING ARTIFACT SEQADV 1X5Q GLY A 106 UNP Q14160 CLONING ARTIFACT SEQADV 1X5Q PRO A 107 UNP Q14160 CLONING ARTIFACT SEQADV 1X5Q SER A 108 UNP Q14160 CLONING ARTIFACT SEQADV 1X5Q SER A 109 UNP Q14160 CLONING ARTIFACT SEQADV 1X5Q GLY A 110 UNP Q14160 CLONING ARTIFACT SEQRES 1 A 110 GLY SER SER GLY SER SER GLY GLU PRO ALA ARG ILE GLU SEQRES 2 A 110 GLU GLU GLU LEU THR LEU THR ILE LEU ARG GLN THR GLY SEQRES 3 A 110 GLY LEU GLY ILE SER ILE ALA GLY GLY LYS GLY SER THR SEQRES 4 A 110 PRO TYR LYS GLY ASP ASP GLU GLY ILE PHE ILE SER ARG SEQRES 5 A 110 VAL SER GLU GLU GLY PRO ALA ALA ARG ALA GLY VAL ARG SEQRES 6 A 110 VAL GLY ASP LYS LEU LEU GLU VAL ASN GLY VAL ALA LEU SEQRES 7 A 110 GLN GLY ALA GLU HIS HIS GLU ALA VAL GLU ALA LEU ARG SEQRES 8 A 110 GLY ALA GLY THR ALA VAL GLN MET ARG VAL TRP ARG GLU SEQRES 9 A 110 SER GLY PRO SER SER GLY HELIX 1 1 GLY A 57 GLY A 63 1 7 HELIX 2 2 GLU A 82 GLY A 92 1 11 SHEET 1 A 5 GLU A 15 LEU A 22 0 SHEET 2 A 5 ALA A 96 ARG A 103 -1 O VAL A 97 N ILE A 21 SHEET 3 A 5 LYS A 69 VAL A 73 -1 N LEU A 71 O ARG A 100 SHEET 4 A 5 ILE A 48 VAL A 53 -1 N ILE A 48 O LEU A 70 SHEET 5 A 5 ILE A 30 GLY A 34 -1 N SER A 31 O SER A 51 SHEET 1 B 4 GLU A 15 LEU A 22 0 SHEET 2 B 4 ALA A 96 ARG A 103 -1 O VAL A 97 N ILE A 21 SHEET 3 B 4 LYS A 69 VAL A 73 -1 N LEU A 71 O ARG A 100 SHEET 4 B 4 VAL A 76 ALA A 77 -1 O VAL A 76 N VAL A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1