HEADER SIGNALING PROTEIN 16-MAY-05 1X5R TITLE SOLUTION STRUCTURE OF THE FOURTH PDZ DOMAIN OF GLUTAMATE RECEPTOR TITLE 2 INTERACTING PROTEIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR INTERACTING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: GRIP2 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA PF00330S1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040705-16; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN; GLUTAMATE RECEPTOR INTERACTING PROTEIN 2, GRIP2 PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1X5R 1 REMARK SEQADV REVDAT 2 24-FEB-09 1X5R 1 VERSN REVDAT 1 16-NOV-05 1X5R 0 JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FOURTH PDZ DOMAIN OF GLUTAMATE JRNL TITL 2 RECEPTOR INTERACTING PROTEIN 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X5R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024413. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.95MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9296, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 84 H GLN A 88 1.53 REMARK 500 O GLU A 85 H LEU A 89 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 29 -88.07 -123.90 REMARK 500 1 THR A 40 77.81 -68.31 REMARK 500 1 GLU A 41 137.11 -178.93 REMARK 500 1 ASP A 68 170.93 -46.62 REMARK 500 1 PHE A 105 163.29 178.44 REMARK 500 1 SER A 107 100.08 -53.72 REMARK 500 2 SER A 2 -58.59 -157.83 REMARK 500 2 ILE A 11 126.99 65.63 REMARK 500 2 VAL A 12 106.03 58.85 REMARK 500 2 HIS A 13 106.49 -175.16 REMARK 500 2 THR A 14 157.60 -49.04 REMARK 500 2 THR A 40 -167.86 -67.14 REMARK 500 2 GLU A 41 127.83 67.71 REMARK 500 2 ASP A 68 166.20 -45.12 REMARK 500 2 ASP A 80 40.33 -100.91 REMARK 500 2 SER A 107 89.56 62.23 REMARK 500 2 SER A 111 147.05 63.28 REMARK 500 3 SER A 6 103.89 -40.26 REMARK 500 3 HIS A 13 -177.74 49.98 REMARK 500 3 THR A 14 177.09 -50.49 REMARK 500 3 PHE A 29 -89.53 -134.44 REMARK 500 3 ILE A 37 156.13 59.01 REMARK 500 3 PHE A 38 150.41 -43.28 REMARK 500 3 GLU A 41 137.28 166.74 REMARK 500 3 THR A 42 151.12 -42.88 REMARK 500 3 SER A 110 78.07 43.09 REMARK 500 4 SER A 5 160.85 66.00 REMARK 500 4 PHE A 29 -90.16 -103.33 REMARK 500 4 ILE A 37 -39.69 -39.48 REMARK 500 4 THR A 40 91.38 -67.26 REMARK 500 4 GLU A 41 145.13 166.12 REMARK 500 4 ASP A 68 150.68 -41.66 REMARK 500 4 SER A 107 105.20 57.91 REMARK 500 5 SER A 5 129.88 62.61 REMARK 500 5 SER A 6 131.30 -176.20 REMARK 500 5 PHE A 29 -85.72 -127.06 REMARK 500 5 THR A 40 -168.43 -70.57 REMARK 500 5 GLU A 41 108.91 67.18 REMARK 500 5 THR A 42 158.79 -39.10 REMARK 500 5 SER A 107 101.83 -58.40 REMARK 500 6 SER A 5 111.67 -176.10 REMARK 500 6 HIS A 13 -55.23 -125.47 REMARK 500 6 GLU A 41 136.36 174.48 REMARK 500 6 VAL A 49 82.20 -65.93 REMARK 500 6 ARG A 91 -70.45 -55.96 REMARK 500 6 SER A 111 84.73 53.47 REMARK 500 7 GLN A 10 82.32 48.04 REMARK 500 7 HIS A 13 119.24 78.90 REMARK 500 7 THR A 14 165.91 61.08 REMARK 500 7 PHE A 29 -90.62 -117.92 REMARK 500 REMARK 500 THIS ENTRY HAS 172 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002101691.2 RELATED DB: TARGETDB DBREF 1X5R A 8 106 UNP Q9C0E4 GRIP2_HUMAN 446 544 SEQADV 1X5R GLY A 1 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1X5R SER A 2 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1X5R SER A 3 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1X5R GLY A 4 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1X5R SER A 5 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1X5R SER A 6 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1X5R GLY A 7 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1X5R SER A 107 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1X5R GLY A 108 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1X5R PRO A 109 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1X5R SER A 110 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1X5R SER A 111 UNP Q9C0E4 CLONING ARTIFACT SEQADV 1X5R GLY A 112 UNP Q9C0E4 CLONING ARTIFACT SEQRES 1 A 112 GLY SER SER GLY SER SER GLY GLY GLY GLN ILE VAL HIS SEQRES 2 A 112 THR GLU THR THR GLU VAL VAL LEU CYS GLY ASP PRO LEU SEQRES 3 A 112 SER GLY PHE GLY LEU GLN LEU GLN GLY GLY ILE PHE ALA SEQRES 4 A 112 THR GLU THR LEU SER SER PRO PRO LEU VAL CYS PHE ILE SEQRES 5 A 112 GLU PRO ASP SER PRO ALA GLU ARG CYS GLY LEU LEU GLN SEQRES 6 A 112 VAL GLY ASP ARG VAL LEU SER ILE ASN GLY ILE ALA THR SEQRES 7 A 112 GLU ASP GLY THR MET GLU GLU ALA ASN GLN LEU LEU ARG SEQRES 8 A 112 ASP ALA ALA LEU ALA HIS LYS VAL VAL LEU GLU VAL GLU SEQRES 9 A 112 PHE ASP SER GLY PRO SER SER GLY HELIX 1 1 SER A 56 CYS A 61 1 6 HELIX 2 2 THR A 82 LEU A 95 1 14 SHEET 1 A 2 GLU A 15 LEU A 21 0 SHEET 2 A 2 VAL A 99 PHE A 105 -1 O PHE A 105 N GLU A 15 SHEET 1 B 2 LEU A 31 GLN A 34 0 SHEET 2 B 2 LEU A 48 ILE A 52 -1 O PHE A 51 N GLN A 32 SHEET 1 C 2 SER A 72 ILE A 73 0 SHEET 2 C 2 ILE A 76 ALA A 77 -1 O ILE A 76 N ILE A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1