data_1X6B # _entry.id 1X6B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X6B pdb_00001x6b 10.2210/pdb1x6b/pdb RCSB RCSB024433 ? ? WWPDB D_1000024433 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002005304.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X6B _pdbx_database_status.recvd_initial_deposition_date 2005-05-17 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sato, M.' 1 'Saito, K.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structures of the SH3 domain of human rho guanine exchange factor (GEF) 16' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sato, M.' 1 ? primary 'Saito, K.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Rho guanine exchange factor (GEF) 16' _entity.formula_weight 8572.308 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'SH3 domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGWQGLSSKGDLPQVEITKAFFAKQADEVTLQQADVVLVLQQEDGWLYGERLRDGETGWFPEDFARFISGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGWQGLSSKGDLPQVEITKAFFAKQADEVTLQQADVVLVLQQEDGWLYGERLRDGETGWFPEDFARFISGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002005304.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 TRP n 1 9 GLN n 1 10 GLY n 1 11 LEU n 1 12 SER n 1 13 SER n 1 14 LYS n 1 15 GLY n 1 16 ASP n 1 17 LEU n 1 18 PRO n 1 19 GLN n 1 20 VAL n 1 21 GLU n 1 22 ILE n 1 23 THR n 1 24 LYS n 1 25 ALA n 1 26 PHE n 1 27 PHE n 1 28 ALA n 1 29 LYS n 1 30 GLN n 1 31 ALA n 1 32 ASP n 1 33 GLU n 1 34 VAL n 1 35 THR n 1 36 LEU n 1 37 GLN n 1 38 GLN n 1 39 ALA n 1 40 ASP n 1 41 VAL n 1 42 VAL n 1 43 LEU n 1 44 VAL n 1 45 LEU n 1 46 GLN n 1 47 GLN n 1 48 GLU n 1 49 ASP n 1 50 GLY n 1 51 TRP n 1 52 LEU n 1 53 TYR n 1 54 GLY n 1 55 GLU n 1 56 ARG n 1 57 LEU n 1 58 ARG n 1 59 ASP n 1 60 GLY n 1 61 GLU n 1 62 THR n 1 63 GLY n 1 64 TRP n 1 65 PHE n 1 66 PRO n 1 67 GLU n 1 68 ASP n 1 69 PHE n 1 70 ALA n 1 71 ARG n 1 72 PHE n 1 73 ILE n 1 74 SER n 1 75 GLY n 1 76 PRO n 1 77 SER n 1 78 SER n 1 79 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ARHGEF16 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040816-12 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q99434_HUMAN _struct_ref.pdbx_db_accession Q99434 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code WQGLSSKGDLPQVEITKAFFAKQADEVTLQQADVVLVLQQEDGWLYGERLRDGETGWFPEDFARFI _struct_ref.pdbx_align_begin 334 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X6B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 73 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q99434 _struct_ref_seq.db_align_beg 334 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 399 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 73 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X6B GLY A 1 ? UNP Q99434 ? ? 'cloning artifact' 1 1 1 1X6B SER A 2 ? UNP Q99434 ? ? 'cloning artifact' 2 2 1 1X6B SER A 3 ? UNP Q99434 ? ? 'cloning artifact' 3 3 1 1X6B GLY A 4 ? UNP Q99434 ? ? 'cloning artifact' 4 4 1 1X6B SER A 5 ? UNP Q99434 ? ? 'cloning artifact' 5 5 1 1X6B SER A 6 ? UNP Q99434 ? ? 'cloning artifact' 6 6 1 1X6B GLY A 7 ? UNP Q99434 ? ? 'cloning artifact' 7 7 1 1X6B SER A 74 ? UNP Q99434 ? ? 'cloning artifact' 74 8 1 1X6B GLY A 75 ? UNP Q99434 ? ? 'cloning artifact' 75 9 1 1X6B PRO A 76 ? UNP Q99434 ? ? 'cloning artifact' 76 10 1 1X6B SER A 77 ? UNP Q99434 ? ? 'cloning artifact' 77 11 1 1X6B SER A 78 ? UNP Q99434 ? ? 'cloning artifact' 78 12 1 1X6B GLY A 79 ? UNP Q99434 ? ? 'cloning artifact' 79 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1mM SH3 domain U-15N, 13C; 20mM d-Tris HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X6B _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1X6B _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X6B _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 1.0.7 'Guntert, P.' 5 refinement CYANA 1.0.7 'Guntert, P.' 6 # _exptl.entry_id 1X6B _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X6B _struct.title 'Solution structures of the SH3 domain of human rho guanine exchange factor (GEF) 16' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X6B _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;SH3 domain, Neuroblastoma, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 66 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 70 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 66 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 70 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 62 ? PHE A 65 ? THR A 62 PHE A 65 A 2 TRP A 51 ? ARG A 56 ? TRP A 51 ARG A 56 A 3 ASP A 40 ? GLU A 48 ? ASP A 40 GLU A 48 A 4 GLN A 19 ? ILE A 22 ? GLN A 19 ILE A 22 A 5 ARG A 71 ? SER A 74 ? ARG A 71 SER A 74 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 65 ? O PHE A 65 N LEU A 52 ? N LEU A 52 A 2 3 O TYR A 53 ? O TYR A 53 N LEU A 45 ? N LEU A 45 A 3 4 O VAL A 42 ? O VAL A 42 N VAL A 20 ? N VAL A 20 A 4 5 N GLN A 19 ? N GLN A 19 O ILE A 73 ? O ILE A 73 # _database_PDB_matrix.entry_id 1X6B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X6B _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 GLY 79 79 79 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-17 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H A LEU 45 ? ? O A TYR 53 ? ? 1.52 2 1 O A ILE 22 ? ? H A ALA 39 ? ? 1.55 3 2 O A THR 23 ? ? HE21 A GLN 38 ? ? 1.53 4 2 H A LEU 45 ? ? O A TYR 53 ? ? 1.54 5 2 O A ILE 22 ? ? H A ALA 39 ? ? 1.54 6 2 H A LYS 29 ? ? OE1 A GLU 33 ? ? 1.59 7 3 O A GLU 67 ? ? H A ALA 70 ? ? 1.54 8 3 H A LEU 45 ? ? O A TYR 53 ? ? 1.54 9 3 H A ILE 22 ? ? O A ASP 40 ? ? 1.59 10 3 O A GLU 48 ? ? H A TRP 51 ? ? 1.60 11 4 O A GLU 48 ? ? H A TRP 51 ? ? 1.55 12 4 O A GLU 67 ? ? H A ALA 70 ? ? 1.55 13 4 H A LEU 45 ? ? O A TYR 53 ? ? 1.55 14 4 H A ILE 22 ? ? O A ASP 40 ? ? 1.58 15 4 O A ILE 22 ? ? H A ALA 39 ? ? 1.60 16 5 O A THR 23 ? ? HE21 A GLN 38 ? ? 1.52 17 5 O A ILE 22 ? ? H A ALA 39 ? ? 1.55 18 5 H A LEU 45 ? ? O A TYR 53 ? ? 1.55 19 5 H A ILE 22 ? ? O A ASP 40 ? ? 1.58 20 6 H A LYS 29 ? ? OE1 A GLU 33 ? ? 1.51 21 6 H A LEU 45 ? ? O A TYR 53 ? ? 1.54 22 6 H A ARG 56 ? ? O A GLU 61 ? ? 1.55 23 6 O A ILE 22 ? ? H A ALA 39 ? ? 1.55 24 6 O A GLU 67 ? ? H A ALA 70 ? ? 1.58 25 7 H A LEU 45 ? ? O A TYR 53 ? ? 1.54 26 7 O A GLU 48 ? ? H A TRP 51 ? ? 1.59 27 7 O A ILE 22 ? ? H A ALA 39 ? ? 1.60 28 8 H A LEU 45 ? ? O A TYR 53 ? ? 1.54 29 8 O A GLU 67 ? ? H A ALA 70 ? ? 1.56 30 8 O A LEU 52 ? ? H A PHE 65 ? ? 1.59 31 9 H A LEU 45 ? ? O A TYR 53 ? ? 1.54 32 9 H A ILE 22 ? ? O A ASP 40 ? ? 1.59 33 9 O A GLU 48 ? ? H A TRP 51 ? ? 1.59 34 9 O A ILE 22 ? ? H A ALA 39 ? ? 1.59 35 10 H A LEU 45 ? ? O A TYR 53 ? ? 1.55 36 10 O A ILE 22 ? ? H A ALA 39 ? ? 1.56 37 11 O A ILE 22 ? ? H A ALA 39 ? ? 1.54 38 11 H A LEU 45 ? ? O A TYR 53 ? ? 1.54 39 12 H A ILE 22 ? ? O A ASP 40 ? ? 1.51 40 12 H A LEU 45 ? ? O A TYR 53 ? ? 1.52 41 12 O A ILE 22 ? ? H A ALA 39 ? ? 1.54 42 12 H A LYS 29 ? ? OE1 A GLU 33 ? ? 1.56 43 13 O A ILE 22 ? ? H A ALA 39 ? ? 1.51 44 13 H A ARG 56 ? ? O A GLU 61 ? ? 1.53 45 13 H A LEU 45 ? ? O A TYR 53 ? ? 1.53 46 13 H A LYS 29 ? ? OE1 A GLU 33 ? ? 1.56 47 13 O A GLU 67 ? ? H A ALA 70 ? ? 1.59 48 14 H A ILE 22 ? ? O A ASP 40 ? ? 1.52 49 14 H A LEU 45 ? ? O A TYR 53 ? ? 1.55 50 14 O A GLU 48 ? ? H A TRP 51 ? ? 1.60 51 15 H A LEU 45 ? ? O A TYR 53 ? ? 1.53 52 15 H A ILE 22 ? ? O A ASP 40 ? ? 1.59 53 16 H A LEU 45 ? ? O A TYR 53 ? ? 1.52 54 16 O A GLN 46 ? ? H A TYR 53 ? ? 1.54 55 16 O A ILE 22 ? ? H A ALA 39 ? ? 1.55 56 16 H A ILE 22 ? ? O A ASP 40 ? ? 1.59 57 17 O A ILE 22 ? ? H A ALA 39 ? ? 1.57 58 17 H A ILE 22 ? ? O A ASP 40 ? ? 1.57 59 18 H A ILE 22 ? ? O A ASP 40 ? ? 1.51 60 18 H A LEU 45 ? ? O A TYR 53 ? ? 1.53 61 18 O A ILE 22 ? ? H A ALA 39 ? ? 1.57 62 18 O A LEU 43 ? ? H A GLU 55 ? ? 1.59 63 19 H A ILE 22 ? ? O A ASP 40 ? ? 1.55 64 19 O A ILE 22 ? ? H A ALA 39 ? ? 1.56 65 20 H A LEU 45 ? ? O A TYR 53 ? ? 1.52 66 20 O A GLU 67 ? ? H A ALA 70 ? ? 1.56 67 20 H A ILE 22 ? ? O A ASP 40 ? ? 1.57 68 20 O A ILE 22 ? ? H A ALA 39 ? ? 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? 63.06 134.04 2 1 SER A 6 ? ? -159.65 85.14 3 1 LEU A 11 ? ? 61.24 83.63 4 1 ALA A 39 ? ? 70.08 48.61 5 1 ASP A 49 ? ? -38.67 102.32 6 1 PHE A 72 ? ? -52.98 106.03 7 1 SER A 77 ? ? -50.06 170.26 8 2 SER A 6 ? ? 68.15 153.46 9 2 ALA A 39 ? ? 70.62 46.82 10 2 ASP A 49 ? ? -38.86 103.01 11 2 PHE A 72 ? ? -53.19 105.48 12 2 SER A 77 ? ? -167.54 103.70 13 3 SER A 5 ? ? -167.90 90.28 14 3 SER A 6 ? ? -173.67 131.18 15 3 TRP A 8 ? ? -151.56 88.83 16 3 SER A 12 ? ? 39.88 79.20 17 3 SER A 13 ? ? 179.71 -59.87 18 3 ASP A 16 ? ? 40.68 73.84 19 3 PHE A 27 ? ? -63.78 98.30 20 3 ALA A 39 ? ? 72.81 46.81 21 3 ASP A 49 ? ? -38.82 103.13 22 3 PHE A 72 ? ? -56.10 103.36 23 4 SER A 2 ? ? 66.47 119.73 24 4 SER A 5 ? ? -176.87 114.77 25 4 SER A 6 ? ? 74.43 -58.66 26 4 TRP A 8 ? ? 65.18 115.28 27 4 LEU A 11 ? ? -133.98 -58.50 28 4 SER A 13 ? ? 69.38 -66.25 29 4 GLU A 33 ? ? -69.76 -176.45 30 4 ALA A 39 ? ? 70.65 48.62 31 4 ASP A 49 ? ? -38.35 102.35 32 4 PHE A 72 ? ? -52.86 103.21 33 4 SER A 77 ? ? -147.43 -60.61 34 5 SER A 3 ? ? -153.04 -60.63 35 5 SER A 12 ? ? 179.76 119.46 36 5 LYS A 14 ? ? 66.35 177.08 37 5 ASP A 16 ? ? 40.45 72.57 38 5 ALA A 25 ? ? -48.28 158.44 39 5 ALA A 39 ? ? 70.45 49.22 40 5 ASP A 49 ? ? -38.89 102.30 41 5 PHE A 69 ? ? -108.89 42.13 42 6 SER A 12 ? ? -169.57 81.07 43 6 LYS A 14 ? ? 69.72 146.26 44 6 ASP A 16 ? ? -105.04 46.01 45 6 ASP A 49 ? ? -39.43 103.43 46 6 PHE A 72 ? ? -52.79 100.88 47 7 SER A 2 ? ? -166.30 86.14 48 7 SER A 3 ? ? 64.74 150.40 49 7 SER A 5 ? ? -164.36 -58.79 50 7 SER A 6 ? ? -125.19 -58.83 51 7 ALA A 39 ? ? 75.36 47.20 52 7 ASP A 49 ? ? -38.63 102.70 53 7 ILE A 73 ? ? -50.11 -71.18 54 7 SER A 77 ? ? 48.24 94.08 55 8 SER A 2 ? ? 62.29 164.54 56 8 SER A 3 ? ? 62.84 133.92 57 8 GLN A 9 ? ? 62.11 77.65 58 8 ASP A 16 ? ? 40.57 75.18 59 8 PHE A 27 ? ? -63.68 98.28 60 8 ALA A 39 ? ? 72.44 48.06 61 8 ASP A 49 ? ? -39.03 102.62 62 8 PHE A 72 ? ? -52.97 99.70 63 9 SER A 2 ? ? 58.68 113.15 64 9 SER A 6 ? ? -162.31 -58.33 65 9 GLN A 9 ? ? 60.04 74.38 66 9 SER A 12 ? ? 63.30 169.10 67 9 SER A 13 ? ? 55.23 168.28 68 9 LYS A 14 ? ? 62.05 141.63 69 9 LEU A 17 ? ? -39.80 150.09 70 9 ASP A 49 ? ? -37.86 102.73 71 9 PHE A 72 ? ? -58.00 99.12 72 9 SER A 78 ? ? -129.14 -58.43 73 10 SER A 2 ? ? 57.23 167.76 74 10 SER A 3 ? ? -174.97 94.22 75 10 SER A 5 ? ? -149.88 -58.10 76 10 GLN A 9 ? ? 65.56 161.10 77 10 LEU A 11 ? ? 58.99 74.55 78 10 ASP A 16 ? ? 40.68 72.50 79 10 ASP A 49 ? ? -39.37 102.55 80 10 ARG A 56 ? ? -59.97 91.31 81 10 PHE A 72 ? ? -53.39 103.66 82 11 SER A 6 ? ? 58.29 164.69 83 11 GLN A 9 ? ? 64.03 84.47 84 11 ASP A 16 ? ? -144.28 31.84 85 11 LEU A 17 ? ? -49.67 161.43 86 11 PHE A 27 ? ? -61.28 97.27 87 11 ALA A 39 ? ? 70.77 47.44 88 11 ASP A 49 ? ? -39.39 102.89 89 11 SER A 74 ? ? 75.66 59.62 90 12 SER A 2 ? ? -177.57 116.07 91 12 SER A 6 ? ? -158.29 -58.43 92 12 LEU A 11 ? ? 72.37 119.11 93 12 LYS A 14 ? ? 32.24 87.19 94 12 ALA A 25 ? ? -46.80 157.75 95 12 ALA A 39 ? ? 71.76 46.38 96 12 ASP A 49 ? ? -39.42 102.43 97 12 SER A 78 ? ? 63.71 144.49 98 13 SER A 2 ? ? 62.00 127.99 99 13 SER A 5 ? ? -164.25 -58.81 100 13 LEU A 11 ? ? 49.62 74.23 101 13 SER A 12 ? ? -106.01 79.88 102 13 SER A 13 ? ? -165.86 88.68 103 13 ASP A 16 ? ? -119.00 69.49 104 13 ALA A 39 ? ? 73.01 49.07 105 13 PHE A 72 ? ? -52.60 101.41 106 13 SER A 77 ? ? -102.17 -62.52 107 13 SER A 78 ? ? 53.55 80.36 108 14 SER A 5 ? ? 62.98 171.31 109 14 SER A 6 ? ? 59.84 160.21 110 14 SER A 13 ? ? -170.20 -61.99 111 14 ASP A 16 ? ? -90.01 45.66 112 14 ASP A 49 ? ? -38.11 102.88 113 14 PHE A 72 ? ? -54.48 100.58 114 14 SER A 77 ? ? 62.45 93.73 115 15 SER A 3 ? ? -135.54 -59.94 116 15 SER A 6 ? ? -158.82 -59.24 117 15 LEU A 17 ? ? -41.75 161.31 118 15 GLN A 19 ? ? 59.56 150.75 119 15 PHE A 27 ? ? -59.27 105.12 120 15 ALA A 39 ? ? 70.54 40.98 121 15 ASP A 49 ? ? -39.71 103.28 122 15 SER A 74 ? ? 84.03 62.21 123 16 SER A 2 ? ? 59.82 105.24 124 16 SER A 5 ? ? 58.98 112.30 125 16 TRP A 8 ? ? -100.71 -70.09 126 16 GLN A 9 ? ? -171.82 -58.96 127 16 SER A 12 ? ? -127.25 -59.27 128 16 SER A 13 ? ? 65.61 130.17 129 16 ASP A 16 ? ? -111.05 68.25 130 16 ALA A 25 ? ? -43.90 154.15 131 16 PHE A 27 ? ? -54.03 106.82 132 16 ALA A 39 ? ? 70.53 50.04 133 16 ASP A 49 ? ? -37.84 102.68 134 16 PHE A 72 ? ? -54.49 102.71 135 16 SER A 77 ? ? 61.97 145.08 136 17 SER A 2 ? ? -102.72 78.73 137 17 LEU A 11 ? ? 71.11 168.18 138 17 SER A 13 ? ? 62.97 126.50 139 17 LYS A 14 ? ? 52.61 80.39 140 17 LEU A 17 ? ? -40.08 152.73 141 17 ALA A 39 ? ? 72.68 47.67 142 17 ASP A 49 ? ? -40.09 104.20 143 17 PHE A 72 ? ? -52.95 103.23 144 17 SER A 77 ? ? -164.05 93.05 145 18 SER A 5 ? ? 179.17 127.86 146 18 GLN A 9 ? ? -47.56 152.33 147 18 LEU A 11 ? ? 63.03 73.14 148 18 SER A 12 ? ? -164.54 -60.60 149 18 SER A 13 ? ? 47.52 92.04 150 18 LEU A 17 ? ? -48.33 159.88 151 18 ALA A 25 ? ? -45.53 155.47 152 18 PHE A 27 ? ? -59.76 105.35 153 18 ALA A 39 ? ? 70.03 45.86 154 18 ASP A 49 ? ? -39.27 103.26 155 18 ARG A 56 ? ? -38.10 145.70 156 18 PHE A 72 ? ? -53.15 104.37 157 19 SER A 3 ? ? -169.11 -58.71 158 19 SER A 5 ? ? -162.30 116.60 159 19 GLN A 9 ? ? 67.03 80.57 160 19 SER A 12 ? ? 63.72 89.37 161 19 SER A 13 ? ? -166.83 114.75 162 19 ALA A 39 ? ? 73.44 47.54 163 19 ASP A 49 ? ? -54.42 102.74 164 19 PHE A 72 ? ? -52.82 106.69 165 20 LEU A 11 ? ? -121.63 -63.46 166 20 SER A 13 ? ? 65.43 105.55 167 20 LEU A 17 ? ? 56.00 165.33 168 20 PHE A 27 ? ? -59.75 108.35 169 20 ALA A 39 ? ? 70.70 48.53 170 20 ASP A 49 ? ? -38.94 102.99 171 20 PHE A 72 ? ? -53.64 104.27 #