HEADER METAL BINDING PROTEIN 03-SEP-04 1XCR TITLE CRYSTAL STRUCTURE OF LONGER SPLICE VARIANT OF PTD012 FROM HOMO SAPIENS TITLE 2 REVEALS A NOVEL ZINC-CONTAINING FOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PTD012; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DKFZP564H1122; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SCS1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRARE; SOURCE 11 OTHER_DETAILS: PSF CLONE ID 110535 & RZPD ID PSFEP250B014 KEYWDS STRUCTURAL GENOMICS, ZINC-CONTAINING FOLD, SPLICE VARIANT, ACETATE KEYWDS 2 BUFFER, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.A.MANJASETTY,M.FIEBER-ERDMANN,Y.ROSKE,F.GOETZ,K.BUESSOW,U.HEINEMANN REVDAT 6 03-APR-24 1XCR 1 REMARK REVDAT 5 13-MAR-24 1XCR 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1XCR 1 VERSN REVDAT 3 24-FEB-09 1XCR 1 VERSN REVDAT 2 23-MAY-06 1XCR 1 JRNL REVDAT 1 27-SEP-05 1XCR 0 JRNL AUTH B.A.MANJASETTY,K.BUESSOW,M.FIEBER-ERDMANN,Y.ROSKE,J.GOBOM, JRNL AUTH 2 C.SCHEICH,F.GOETZ,F.H.NIESEN,U.HEINEMANN JRNL TITL CRYSTAL STRUCTURE OF HOMO SAPIENS PTD012 REVEALS A JRNL TITL 2 ZINC-CONTAINING HYDROLASE FOLD JRNL REF PROTEIN SCI. V. 15 914 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16522806 JRNL DOI 10.1110/PS.052037006 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 57927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3103 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4161 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4846 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 310 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.57000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : 0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.460 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5009 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4439 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6794 ; 1.310 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10377 ; 1.235 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 624 ; 8.072 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;36.003 ;24.318 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 797 ;13.207 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.247 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 726 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5611 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1010 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 864 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4325 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2342 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2718 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 272 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.031 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.146 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 34 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.107 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3337 ; 0.669 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1264 ; 0.155 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5047 ; 0.918 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2040 ; 1.619 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1747 ; 2.281 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0033 -15.2720 15.7187 REMARK 3 T TENSOR REMARK 3 T11: -0.1190 T22: -0.0543 REMARK 3 T33: -0.0829 T12: -0.0438 REMARK 3 T13: -0.0016 T23: -0.0789 REMARK 3 L TENSOR REMARK 3 L11: 4.7177 L22: 1.5539 REMARK 3 L33: 4.9841 L12: -2.0958 REMARK 3 L13: -3.7930 L23: 2.2542 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.6832 S13: -0.2325 REMARK 3 S21: -0.0207 S22: -0.1712 S23: 0.0359 REMARK 3 S31: 0.0929 S32: -0.6089 S33: 0.1848 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 315 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2155 13.6113 47.0053 REMARK 3 T TENSOR REMARK 3 T11: -0.0839 T22: -0.0925 REMARK 3 T33: -0.0997 T12: 0.0153 REMARK 3 T13: -0.0351 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.0637 L22: 1.2840 REMARK 3 L33: 0.9668 L12: -0.2616 REMARK 3 L13: -0.1391 L23: 0.6316 REMARK 3 S TENSOR REMARK 3 S11: -0.0844 S12: -0.2043 S13: 0.0754 REMARK 3 S21: 0.0482 S22: -0.0064 S23: 0.0528 REMARK 3 S31: -0.0368 S32: -0.0123 S33: 0.0907 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 TLS REFINEMENT REMARK 4 REMARK 4 1XCR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030211. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : SI111-DCM REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61064 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.21500 REMARK 200 R SYM FOR SHELL (I) : 0.21500 REMARK 200 FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NIL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG4000, 200MM AMMONIUM ACETATE, REMARK 280 12% GLYCEROL, 100MM NA-ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.44400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TWO MOLECULES IN THE ASSYMMETRIC UNIT. REMARK 300 BIOLOGICAL UNIT IS MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 ALA B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 14 CD OE1 OE2 REMARK 470 LYS A 22 CD CE NZ REMARK 470 GLU A 44 CD OE1 OE2 REMARK 470 LYS A 51 CE NZ REMARK 470 GLU A 118 CD OE1 OE2 REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 LYS A 148 CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 ARG A 177 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 236 CD CE NZ REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 22 CD CE NZ REMARK 470 GLN B 32 CG CD OE1 NE2 REMARK 470 GLU B 118 CD OE1 OE2 REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 LYS B 148 CE NZ REMARK 470 LYS B 176 CD CE NZ REMARK 470 ARG B 177 NE CZ NH1 NH2 REMARK 470 LYS B 236 CD CE NZ REMARK 470 LYS B 244 CG CD CE NZ REMARK 470 LYS B 307 CG CD CE NZ REMARK 470 GLU B 308 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 18 C GLY A 18 O 0.134 REMARK 500 CYS A 187 CB CYS A 187 SG 0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 13 -74.80 5.27 REMARK 500 PRO A 66 -9.93 -59.87 REMARK 500 ASP A 151 -167.64 -114.20 REMARK 500 LEU A 156 -51.36 74.01 REMARK 500 ARG A 177 92.25 66.31 REMARK 500 THR B 47 51.12 39.40 REMARK 500 ASP B 137 4.97 -155.21 REMARK 500 ASP B 151 -168.37 -109.09 REMARK 500 LEU B 156 -51.60 75.42 REMARK 500 ARG B 177 91.12 67.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 12 LEU A 13 114.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 266 NE2 REMARK 620 2 HIS A 268 NE2 100.8 REMARK 620 3 HIS A 278 ND1 105.2 114.1 REMARK 620 4 ACY A2001 OXT 106.7 113.9 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 266 NE2 REMARK 620 2 HIS B 268 NE2 103.9 REMARK 620 3 HIS B 278 ND1 104.5 109.5 REMARK 620 4 ACY B2002 OXT 110.3 115.5 112.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 2002 DBREF 1XCR A 2 315 UNP Q9H0W9 Q9H0W9_HUMAN 2 315 DBREF 1XCR B 2 315 UNP Q9H0W9 Q9H0W9_HUMAN 2 315 SEQADV 1XCR GLY A 0 UNP Q9H0W9 CLONING ARTIFACT SEQADV 1XCR SER A 1 UNP Q9H0W9 CLONING ARTIFACT SEQADV 1XCR GLY B 0 UNP Q9H0W9 CLONING ARTIFACT SEQADV 1XCR SER B 1 UNP Q9H0W9 CLONING ARTIFACT SEQRES 1 A 316 GLY SER ALA CYS ALA GLU PHE SER PHE HIS VAL PRO SER SEQRES 2 A 316 LEU GLU GLU LEU ALA GLY VAL MET GLN LYS GLY LEU LYS SEQRES 3 A 316 ASP ASN PHE ALA ASP VAL GLN VAL SER VAL VAL ASP CYS SEQRES 4 A 316 PRO ASP LEU THR LYS GLU PRO PHE THR PHE PRO VAL LYS SEQRES 5 A 316 GLY ILE CYS GLY LYS THR ARG ILE ALA GLU VAL GLY GLY SEQRES 6 A 316 VAL PRO TYR LEU LEU PRO LEU VAL ASN GLN LYS LYS VAL SEQRES 7 A 316 TYR ASP LEU ASN LYS ILE ALA LYS GLU ILE LYS LEU PRO SEQRES 8 A 316 GLY ALA PHE ILE LEU GLY ALA GLY ALA GLY PRO PHE GLN SEQRES 9 A 316 THR LEU GLY PHE ASN SER GLU PHE MET PRO VAL ILE GLN SEQRES 10 A 316 THR GLU SER GLU HIS LYS PRO PRO VAL ASN GLY SER TYR SEQRES 11 A 316 PHE ALA HIS VAL ASN PRO ALA ASP GLY GLY CYS LEU LEU SEQRES 12 A 316 GLU LYS TYR SER GLU LYS CYS HIS ASP PHE GLN CYS ALA SEQRES 13 A 316 LEU LEU ALA ASN LEU PHE ALA SER GLU GLY GLN PRO GLY SEQRES 14 A 316 LYS VAL ILE GLU VAL LYS ALA LYS ARG ARG THR GLY PRO SEQRES 15 A 316 LEU ASN PHE VAL THR CYS MET ARG GLU THR LEU GLU LYS SEQRES 16 A 316 HIS TYR GLY ASN LYS PRO ILE GLY MET GLY GLY THR PHE SEQRES 17 A 316 ILE ILE GLN LYS GLY LYS VAL LYS SER HIS ILE MET PRO SEQRES 18 A 316 ALA GLU PHE SER SER CYS PRO LEU ASN SER ASP GLU GLU SEQRES 19 A 316 VAL ASN LYS TRP LEU HIS PHE TYR GLU MET LYS ALA PRO SEQRES 20 A 316 LEU VAL CYS LEU PRO VAL PHE VAL SER ARG ASP PRO GLY SEQRES 21 A 316 PHE ASP LEU ARG LEU GLU HIS THR HIS PHE PHE SER ARG SEQRES 22 A 316 HIS GLY GLU GLY GLY HIS TYR HIS TYR ASP THR THR PRO SEQRES 23 A 316 ASP ILE VAL GLU TYR LEU GLY TYR PHE LEU PRO ALA GLU SEQRES 24 A 316 PHE LEU TYR ARG ILE ASP GLN PRO LYS GLU THR HIS SER SEQRES 25 A 316 ILE GLY ARG ASP SEQRES 1 B 316 GLY SER ALA CYS ALA GLU PHE SER PHE HIS VAL PRO SER SEQRES 2 B 316 LEU GLU GLU LEU ALA GLY VAL MET GLN LYS GLY LEU LYS SEQRES 3 B 316 ASP ASN PHE ALA ASP VAL GLN VAL SER VAL VAL ASP CYS SEQRES 4 B 316 PRO ASP LEU THR LYS GLU PRO PHE THR PHE PRO VAL LYS SEQRES 5 B 316 GLY ILE CYS GLY LYS THR ARG ILE ALA GLU VAL GLY GLY SEQRES 6 B 316 VAL PRO TYR LEU LEU PRO LEU VAL ASN GLN LYS LYS VAL SEQRES 7 B 316 TYR ASP LEU ASN LYS ILE ALA LYS GLU ILE LYS LEU PRO SEQRES 8 B 316 GLY ALA PHE ILE LEU GLY ALA GLY ALA GLY PRO PHE GLN SEQRES 9 B 316 THR LEU GLY PHE ASN SER GLU PHE MET PRO VAL ILE GLN SEQRES 10 B 316 THR GLU SER GLU HIS LYS PRO PRO VAL ASN GLY SER TYR SEQRES 11 B 316 PHE ALA HIS VAL ASN PRO ALA ASP GLY GLY CYS LEU LEU SEQRES 12 B 316 GLU LYS TYR SER GLU LYS CYS HIS ASP PHE GLN CYS ALA SEQRES 13 B 316 LEU LEU ALA ASN LEU PHE ALA SER GLU GLY GLN PRO GLY SEQRES 14 B 316 LYS VAL ILE GLU VAL LYS ALA LYS ARG ARG THR GLY PRO SEQRES 15 B 316 LEU ASN PHE VAL THR CYS MET ARG GLU THR LEU GLU LYS SEQRES 16 B 316 HIS TYR GLY ASN LYS PRO ILE GLY MET GLY GLY THR PHE SEQRES 17 B 316 ILE ILE GLN LYS GLY LYS VAL LYS SER HIS ILE MET PRO SEQRES 18 B 316 ALA GLU PHE SER SER CYS PRO LEU ASN SER ASP GLU GLU SEQRES 19 B 316 VAL ASN LYS TRP LEU HIS PHE TYR GLU MET LYS ALA PRO SEQRES 20 B 316 LEU VAL CYS LEU PRO VAL PHE VAL SER ARG ASP PRO GLY SEQRES 21 B 316 PHE ASP LEU ARG LEU GLU HIS THR HIS PHE PHE SER ARG SEQRES 22 B 316 HIS GLY GLU GLY GLY HIS TYR HIS TYR ASP THR THR PRO SEQRES 23 B 316 ASP ILE VAL GLU TYR LEU GLY TYR PHE LEU PRO ALA GLU SEQRES 24 B 316 PHE LEU TYR ARG ILE ASP GLN PRO LYS GLU THR HIS SER SEQRES 25 B 316 ILE GLY ARG ASP HET ZN A1001 1 HET ACY A2001 4 HET ZN B1002 1 HET ACY B2002 4 HETNAM ZN ZINC ION HETNAM ACY ACETIC ACID FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ACY 2(C2 H4 O2) FORMUL 7 HOH *310(H2 O) HELIX 1 1 SER A 12 ASN A 27 1 16 HELIX 2 2 VAL A 65 LEU A 68 5 4 HELIX 3 3 LEU A 80 ILE A 87 1 8 HELIX 4 4 PRO A 101 GLY A 106 1 6 HELIX 5 5 TYR A 145 CYS A 149 1 5 HELIX 6 6 ASN A 183 GLY A 197 1 15 HELIX 7 7 SER A 230 LEU A 238 1 9 HELIX 8 8 SER B 12 LYS B 25 1 14 HELIX 9 9 VAL B 65 LEU B 68 5 4 HELIX 10 10 LEU B 80 ILE B 87 1 8 HELIX 11 11 PRO B 101 GLY B 106 1 6 HELIX 12 12 SER B 146 LYS B 148 5 3 HELIX 13 13 ASN B 183 GLY B 197 1 15 HELIX 14 14 SER B 230 LEU B 238 1 9 SHEET 1 A 7 ALA A 4 SER A 7 0 SHEET 2 A 7 PHE A 299 ILE A 303 -1 O LEU A 300 N PHE A 6 SHEET 3 A 7 ARG A 58 GLY A 63 1 N GLU A 61 O ILE A 303 SHEET 4 A 7 GLN A 153 SER A 163 -1 O ALA A 162 N ARG A 58 SHEET 5 A 7 PHE A 93 ALA A 99 -1 N PHE A 93 O SER A 163 SHEET 6 A 7 VAL A 114 GLN A 116 -1 O ILE A 115 N ILE A 94 SHEET 7 A 7 VAL A 125 ASN A 126 -1 O VAL A 125 N GLN A 116 SHEET 1 B 6 VAL A 77 ASP A 79 0 SHEET 2 B 6 GLN A 153 SER A 163 -1 O CYS A 154 N TYR A 78 SHEET 3 B 6 PHE A 93 ALA A 99 -1 N PHE A 93 O SER A 163 SHEET 4 B 6 GLU A 110 MET A 112 -1 O PHE A 111 N GLY A 98 SHEET 5 B 6 TYR A 129 VAL A 133 -1 O TYR A 129 N MET A 112 SHEET 6 B 6 CYS A 140 LYS A 144 -1 O GLU A 143 N PHE A 130 SHEET 1 C 9 PHE A 28 ASP A 37 0 SHEET 2 C 9 LYS A 169 ARG A 178 -1 O LYS A 174 N GLN A 32 SHEET 3 C 9 GLU A 289 PRO A 296 -1 O TYR A 290 N ALA A 175 SHEET 4 C 9 GLY A 202 LYS A 211 -1 N THR A 206 O TYR A 293 SHEET 5 C 9 LEU A 247 VAL A 254 -1 O CYS A 249 N PHE A 207 SHEET 6 C 9 GLU A 265 PHE A 270 -1 O PHE A 270 N VAL A 248 SHEET 7 C 9 GLY A 277 ASP A 282 -1 O TYR A 279 N THR A 267 SHEET 8 C 9 LYS A 213 ILE A 218 -1 N LYS A 215 O TYR A 281 SHEET 9 C 9 HIS A 239 LYS A 244 -1 O HIS A 239 N ILE A 218 SHEET 1 D 7 ALA B 4 SER B 7 0 SHEET 2 D 7 PHE B 299 ILE B 303 -1 O ARG B 302 N ALA B 4 SHEET 3 D 7 ARG B 58 GLY B 63 1 N ILE B 59 O PHE B 299 SHEET 4 D 7 GLN B 153 SER B 163 -1 O ALA B 162 N ARG B 58 SHEET 5 D 7 PHE B 93 ALA B 99 -1 N LEU B 95 O PHE B 161 SHEET 6 D 7 VAL B 114 GLN B 116 -1 O ILE B 115 N ILE B 94 SHEET 7 D 7 VAL B 125 ASN B 126 -1 O VAL B 125 N GLN B 116 SHEET 1 E 6 VAL B 77 ASP B 79 0 SHEET 2 E 6 GLN B 153 SER B 163 -1 O CYS B 154 N TYR B 78 SHEET 3 E 6 PHE B 93 ALA B 99 -1 N LEU B 95 O PHE B 161 SHEET 4 E 6 GLU B 110 MET B 112 -1 O PHE B 111 N GLY B 98 SHEET 5 E 6 TYR B 129 VAL B 133 -1 O TYR B 129 N MET B 112 SHEET 6 E 6 CYS B 140 LYS B 144 -1 O GLU B 143 N PHE B 130 SHEET 1 F 9 PHE B 28 ASP B 37 0 SHEET 2 F 9 LYS B 169 ARG B 178 -1 O GLU B 172 N SER B 34 SHEET 3 F 9 GLU B 289 PRO B 296 -1 O GLY B 292 N VAL B 173 SHEET 4 F 9 GLY B 202 LYS B 211 -1 N THR B 206 O TYR B 293 SHEET 5 F 9 LEU B 247 VAL B 254 -1 O CYS B 249 N PHE B 207 SHEET 6 F 9 GLU B 265 PHE B 270 -1 O HIS B 268 N LEU B 250 SHEET 7 F 9 GLY B 277 ASP B 282 -1 O TYR B 279 N THR B 267 SHEET 8 F 9 LYS B 213 ILE B 218 -1 N LYS B 215 O TYR B 281 SHEET 9 F 9 HIS B 239 LYS B 244 -1 O MET B 243 N VAL B 214 LINK NE2 HIS A 266 ZN ZN A1001 1555 1555 2.02 LINK NE2 HIS A 268 ZN ZN A1001 1555 1555 2.08 LINK ND1 HIS A 278 ZN ZN A1001 1555 1555 2.16 LINK ZN ZN A1001 OXT ACY A2001 1555 1555 2.08 LINK NE2 HIS B 266 ZN ZN B1002 1555 1555 2.04 LINK NE2 HIS B 268 ZN ZN B1002 1555 1555 2.03 LINK ND1 HIS B 278 ZN ZN B1002 1555 1555 2.12 LINK ZN ZN B1002 OXT ACY B2002 1555 1555 1.99 CISPEP 1 GLU A 44 PRO A 45 0 3.78 CISPEP 2 LEU A 69 PRO A 70 0 -3.49 CISPEP 3 ALA A 245 PRO A 246 0 -3.07 CISPEP 4 GLU B 44 PRO B 45 0 5.80 CISPEP 5 LEU B 69 PRO B 70 0 -4.67 CISPEP 6 ALA B 245 PRO B 246 0 -0.87 SITE 1 AC1 5 GLU A 110 HIS A 266 HIS A 268 HIS A 278 SITE 2 AC1 5 ACY A2001 SITE 1 AC2 4 HIS B 266 HIS B 268 HIS B 278 ACY B2002 SITE 1 AC3 11 GLY A 98 ALA A 99 GLU A 110 LEU A 157 SITE 2 AC3 11 MET A 219 HIS A 266 HIS A 268 HIS A 278 SITE 3 AC3 11 ZN A1001 HOH A2062 HOH A2126 SITE 1 AC4 11 GLY B 98 ALA B 99 GLU B 110 LEU B 157 SITE 2 AC4 11 MET B 219 HIS B 266 HIS B 268 HIS B 278 SITE 3 AC4 11 ZN B1002 HOH B2054 HOH B2140 CRYST1 44.572 52.888 124.485 90.00 88.89 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022436 0.000000 -0.000435 0.00000 SCALE2 0.000000 0.018908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008035 0.00000