HEADER HYDROLASE 07-OCT-04 1XOV TITLE THE CRYSTAL STRUCTURE OF THE LISTERIA MONOCYTOGENES BACTERIOPHAGE PSA TITLE 2 ENDOLYSIN PLYPSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PLYPSA; COMPND 5 EC: 3.5.1.28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA PHAGE PSA; SOURCE 3 ORGANISM_TAXID: 171618; SOURCE 4 GENE: PLY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM83; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSPLPSA; SOURCE 10 OTHER_DETAILS: HOST: LISTERIA MONOCYTOGENES KEYWDS ALPHA/BETA HYDROLASE, MULTI-DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.P.KORNDOERFER,A.SKERRA REVDAT 4 03-JAN-24 1XOV 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1XOV 1 VERSN REVDAT 2 22-APR-08 1XOV 1 JRNL VERSN REVDAT 1 18-OCT-05 1XOV 0 JRNL AUTH I.P.KORNDOERFER,J.DANZER,M.SCHMELCHER,M.ZIMMER,A.SKERRA, JRNL AUTH 2 M.J.LOESSNER JRNL TITL THE CRYSTAL STRUCTURE OF THE BACTERIOPHAGE PSA ENDOLYSIN JRNL TITL 2 REVEALS A UNIQUE FOLD RESPONSIBLE FOR SPECIFIC RECOGNITION JRNL TITL 3 OF LISTERIA CELL WALLS JRNL REF J.MOL.BIOL. V. 364 678 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 17010991 JRNL DOI 10.1016/J.JMB.2006.08.069 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2442 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3388 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.29000 REMARK 3 B22 (A**2) : -1.29000 REMARK 3 B33 (A**2) : 1.93000 REMARK 3 B12 (A**2) : -0.64000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2570 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2299 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3457 ; 1.591 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5386 ; 0.785 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 6.492 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;32.600 ;24.206 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;14.130 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.139 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2808 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 511 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 485 ; 0.220 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2210 ; 0.210 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1230 ; 0.188 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1461 ; 0.093 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 327 ; 0.226 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.037 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.347 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.310 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 51 ; 0.255 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1998 ; 2.268 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 654 ; 0.535 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2508 ; 2.671 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1234 ; 2.209 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 949 ; 2.917 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 79.8290 14.5740 10.2730 REMARK 3 T TENSOR REMARK 3 T11: -0.0902 T22: -0.1387 REMARK 3 T33: -0.3219 T12: 0.0189 REMARK 3 T13: 0.0338 T23: 0.0770 REMARK 3 L TENSOR REMARK 3 L11: 3.0806 L22: 2.6339 REMARK 3 L33: 2.0160 L12: 0.2417 REMARK 3 L13: 0.1451 L23: 0.0214 REMARK 3 S TENSOR REMARK 3 S11: -0.0884 S12: 0.1559 S13: 0.1308 REMARK 3 S21: 0.1722 S22: 0.0861 S23: 0.0991 REMARK 3 S31: -0.0552 S32: -0.0511 S33: 0.0023 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 314 REMARK 3 ORIGIN FOR THE GROUP (A): 41.9660 34.5930 0.5870 REMARK 3 T TENSOR REMARK 3 T11: 0.0040 T22: 0.0213 REMARK 3 T33: 0.0769 T12: 0.0013 REMARK 3 T13: 0.0055 T23: 0.1117 REMARK 3 L TENSOR REMARK 3 L11: 3.9390 L22: 1.3973 REMARK 3 L33: 0.5225 L12: -1.8003 REMARK 3 L13: 0.7491 L23: -0.2875 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.0543 S13: -0.2725 REMARK 3 S21: -0.0406 S22: 0.0718 S23: 0.1751 REMARK 3 S31: 0.0309 S32: -0.0397 S33: -0.0446 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 THE DATA USED FOR REFINEMENT IS FROM A NATIVE CRYSTAL WHICH WAS REMARK 3 ONLY MEASURED A 0.92 A. REMARK 4 REMARK 4 1XOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48940 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.79 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 5.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.00 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : 0.70000 REMARK 200 FOR SHELL : 1.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 0.2M (NH4)2SO4, 25% PEG REMARK 280 3350, PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.22233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 142.44467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.83350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 178.05583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.61117 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.22233 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 142.44467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 178.05583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 106.83350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.61117 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2234 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2292 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -11 REMARK 465 SER A -10 REMARK 465 TRP A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 PRO A -6 REMARK 465 GLN A -5 REMARK 465 PHE A -4 REMARK 465 GLU A -3 REMARK 465 LYS A -2 REMARK 465 GLY A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 TRS A 1008 O HOH A 2249 1.85 REMARK 500 O HOH A 2121 O HOH A 2286 2.01 REMARK 500 O HOH A 2016 O HOH A 2200 2.05 REMARK 500 O HOH A 2193 O HOH A 2244 2.07 REMARK 500 C LYS A 2002 O HOH A 2307 2.12 REMARK 500 O HOH A 2033 O HOH A 2104 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2070 O HOH A 2146 8565 2.04 REMARK 500 O3 TRS A 1008 O3 TRS A 1008 8555 2.05 REMARK 500 OD1 ASP A 126 OD1 ASP A 126 12545 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 73 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 119 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 126 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 199 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 255 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 -3.85 150.76 REMARK 500 HIS A 10 -175.25 73.91 REMARK 500 CYS A 14 79.95 -160.01 REMARK 500 ASP A 19 -116.17 -151.53 REMARK 500 HIS A 219 -68.69 -135.11 REMARK 500 ASP A 230 16.29 59.38 REMARK 500 SER A 274 -152.20 57.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 RESIDUES GLU 2001 AND LYS 2002 ARE UNIDENTIFIED REMARK 600 COPURIFIED PEPTIDE. REMARK 600 THIS PEPTIDE IS POSSIBLY DEGRADATION OR AUTOPROTEOLYSIS REMARK 600 PRODUCT. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LYS A 2002 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 10 NE2 REMARK 620 2 GLU A 23 OE2 97.8 REMARK 620 3 HIS A 79 ND1 102.6 96.5 REMARK 620 4 GLU A2001 N 144.0 94.4 109.4 REMARK 620 5 GLU A2001 O 87.3 168.7 92.1 75.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 1008 DBREF 1XOV A 1 314 UNP Q8W5Y8 Q8W5Y8_9CAUD 1 314 SEQADV 1XOV ALA A -11 UNP Q8W5Y8 EXPRESSION TAG SEQADV 1XOV SER A -10 UNP Q8W5Y8 EXPRESSION TAG SEQADV 1XOV TRP A -9 UNP Q8W5Y8 EXPRESSION TAG SEQADV 1XOV SER A -8 UNP Q8W5Y8 EXPRESSION TAG SEQADV 1XOV HIS A -7 UNP Q8W5Y8 EXPRESSION TAG SEQADV 1XOV PRO A -6 UNP Q8W5Y8 EXPRESSION TAG SEQADV 1XOV GLN A -5 UNP Q8W5Y8 EXPRESSION TAG SEQADV 1XOV PHE A -4 UNP Q8W5Y8 EXPRESSION TAG SEQADV 1XOV GLU A -3 UNP Q8W5Y8 EXPRESSION TAG SEQADV 1XOV LYS A -2 UNP Q8W5Y8 EXPRESSION TAG SEQADV 1XOV GLY A -1 UNP Q8W5Y8 EXPRESSION TAG SEQADV 1XOV ALA A 0 UNP Q8W5Y8 EXPRESSION TAG SEQRES 1 A 326 ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA MET SEQRES 2 A 326 SER ASN TYR SER MET SER ARG GLY HIS SER ASP LYS CYS SEQRES 3 A 326 VAL GLY ALA GLU ASP ILE LEU SER GLU ILE LYS GLU ALA SEQRES 4 A 326 GLU LYS VAL LEU ASN ALA ALA SER ASP GLU LEU LYS ARG SEQRES 5 A 326 GLU GLY HIS ASN VAL LYS THR PHE ILE ASP ARG THR SER SEQRES 6 A 326 THR THR GLN SER ALA ASN LEU ASN LYS ILE VAL ASN TRP SEQRES 7 A 326 HIS ASN ALA ASN PRO ALA ASP VAL HIS ILE SER VAL HIS SEQRES 8 A 326 LEU ASN ALA GLY LYS GLY THR GLY VAL GLU VAL TRP TYR SEQRES 9 A 326 TYR ALA GLY ASP GLU LYS GLY ARG LYS LEU ALA VAL GLU SEQRES 10 A 326 ILE SER ALA LYS MET ALA LYS ALA LEU GLY LEU PRO ASN SEQRES 11 A 326 ARG GLY ALA LYS ALA THR LYS ASP LEU ARG PHE LEU ASN SEQRES 12 A 326 SER THR LYS GLY THR ALA VAL LEU LEU GLU VAL CYS PHE SEQRES 13 A 326 VAL ASP ARG LYS GLU ASP ALA ASN ALA ILE HIS LYS SER SEQRES 14 A 326 GLY MET TYR ASP LYS LEU GLY ILE ALA ILE ALA GLU GLY SEQRES 15 A 326 LEU THR GLY LYS THR VAL ALA ALA LYS ASN PRO ASN ARG SEQRES 16 A 326 HIS SER GLY ALA VAL VAL ASP SER VAL PRO MET LEU SER SEQRES 17 A 326 LYS MET ASP PHE LYS SER SER PRO ILE LYS MET TYR LYS SEQRES 18 A 326 ALA GLY SER SER LEU LEU VAL TYR GLU HIS ASN LYS TYR SEQRES 19 A 326 TRP TYR LYS ALA TYR ILE ASN ASP LYS LEU CYS TYR ILE SEQRES 20 A 326 TYR LYS SER PHE CYS ILE SER ASN GLY LYS LYS ASP ALA SEQRES 21 A 326 LYS GLY ARG ILE LYS VAL ARG ILE LYS SER ALA LYS ASP SEQRES 22 A 326 LEU ARG ILE PRO VAL TRP ASN ASN THR LYS LEU ASN SER SEQRES 23 A 326 GLY LYS ILE LYS TRP TYR SER PRO GLY THR LYS LEU SER SEQRES 24 A 326 TRP TYR ASP ASN LYS LYS GLY TYR LEU GLU LEU TRP TYR SEQRES 25 A 326 GLU LYS ASP GLY TRP TYR TYR THR ALA ASN TYR PHE LEU SEQRES 26 A 326 LYS HET ZN A1001 1 HET SO4 A1002 5 HET CL A1005 1 HET GLU A2001 9 HET LYS A2002 9 HET TRS A1008 8 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GLU GLUTAMIC ACID HETNAM LYS LYSINE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 CL CL 1- FORMUL 5 GLU C5 H9 N O4 FORMUL 6 LYS C6 H15 N2 O2 1+ FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 8 HOH *307(H2 O) HELIX 1 1 SER A 22 GLU A 41 1 20 HELIX 2 2 THR A 55 ASN A 70 1 16 HELIX 3 3 ASP A 96 GLY A 115 1 20 HELIX 4 4 LEU A 127 THR A 133 1 7 HELIX 5 5 ARG A 147 HIS A 155 1 9 HELIX 6 6 GLY A 158 GLY A 173 1 16 HELIX 7 7 LYS A 179 PRO A 181 5 3 HELIX 8 8 ALA A 309 TYR A 311 5 3 SHEET 1 A 6 ASN A 44 ASP A 50 0 SHEET 2 A 6 ASN A 3 SER A 11 1 N TYR A 4 O ASN A 44 SHEET 3 A 6 VAL A 74 ASN A 81 1 O ILE A 76 N SER A 7 SHEET 4 A 6 ALA A 137 PHE A 144 1 O CYS A 143 N ASN A 81 SHEET 5 A 6 VAL A 88 TYR A 93 -1 N TRP A 91 O LEU A 139 SHEET 6 A 6 ASN A 118 THR A 124 1 O LYS A 122 N VAL A 90 SHEET 1 B 3 LYS A 285 TYR A 289 0 SHEET 2 B 3 ARG A 183 VAL A 188 -1 N HIS A 184 O TRP A 288 SHEET 3 B 3 LEU A 313 LYS A 314 -1 O LYS A 314 N ALA A 187 SHEET 1 C 2 SER A 191 LEU A 195 0 SHEET 2 C 2 PRO A 204 LYS A 209 -1 O TYR A 208 N VAL A 192 SHEET 1 D 5 LYS A 231 TYR A 236 0 SHEET 2 D 5 TRP A 223 ILE A 228 -1 N ALA A 226 O CYS A 233 SHEET 3 D 5 SER A 213 GLU A 218 -1 N TYR A 217 O LYS A 225 SHEET 4 D 5 ILE A 252 ILE A 256 -1 O ILE A 252 N VAL A 216 SHEET 5 D 5 CYS A 240 SER A 242 -1 N ILE A 241 O ARG A 255 SHEET 1 E 2 ILE A 264 TRP A 267 0 SHEET 2 E 2 ILE A 277 TYR A 280 -1 O LYS A 278 N VAL A 266 SHEET 1 F 2 LEU A 296 TYR A 300 0 SHEET 2 F 2 GLY A 304 THR A 308 -1 O THR A 308 N LEU A 296 LINK C GLU A2001 N LYS A2002 1555 1555 1.33 LINK NE2 HIS A 10 ZN ZN A1001 1555 1555 2.01 LINK OE2 GLU A 23 ZN ZN A1001 1555 1555 2.15 LINK ND1 HIS A 79 ZN ZN A1001 1555 1555 2.08 LINK ZN ZN A1001 N GLU A2001 1555 1555 2.06 LINK ZN ZN A1001 O GLU A2001 1555 1555 2.32 SITE 1 AC1 4 HIS A 10 GLU A 23 HIS A 79 GLU A2001 SITE 1 AC2 6 LYS A 249 ARG A 251 LYS A 278 TYR A 280 SITE 2 AC2 6 TYR A 300 HOH A2212 SITE 1 AC3 2 TYR A 217 ARG A 251 SITE 1 AC4 9 HIS A 10 ALA A 17 GLU A 23 HIS A 79 SITE 2 AC4 9 LEU A 80 GLU A 141 ZN A1001 LYS A2002 SITE 3 AC4 9 HOH A2307 SITE 1 AC5 5 GLN A 56 LEU A 127 GLU A2001 HOH A2082 SITE 2 AC5 5 HOH A2307 SITE 1 AC6 5 LYS A 84 ARG A 119 ARG A 147 HOH A2122 SITE 2 AC6 5 HOH A2249 CRYST1 90.586 90.586 213.667 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011039 0.006374 0.000000 0.00000 SCALE2 0.000000 0.012747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004680 0.00000