HEADER LIPID BINDING PROTEIN 11-OCT-04 1XQ8 TITLE HUMAN MICELLE-BOUND ALPHA-SYNUCLEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-SYNUCLEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-A BETA COMPONENT OF AD AMYLOID, NON-A4 COMPONENT OF COMPND 5 AMYLOID, NACP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SNCA, NACP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-41 KEYWDS MICELLE-BOUND HELIX, LIPID BINDING PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR T.S.ULMER,A.BAX,N.B.COLE,R.L.NUSSBAUM REVDAT 7 02-MAR-22 1XQ8 1 REMARK REVDAT 6 24-FEB-09 1XQ8 1 VERSN REVDAT 5 26-APR-05 1XQ8 1 HEADER REVDAT 4 12-APR-05 1XQ8 1 JRNL REVDAT 3 22-FEB-05 1XQ8 1 JRNL REVDAT 2 08-FEB-05 1XQ8 1 JRNL REVDAT 1 11-JAN-05 1XQ8 0 JRNL AUTH T.S.ULMER,A.BAX,N.B.COLE,R.L.NUSSBAUM JRNL TITL STRUCTURE AND DYNAMICS OF MICELLE-BOUND HUMAN JRNL TITL 2 ALPHA-SYNUCLEIN JRNL REF J.BIOL.CHEM. V. 280 9595 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15615727 JRNL DOI 10.1074/JBC.M411805200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 2.9.5 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PLEASE NOTE THAT LARGE AMPLITUDE REMARK 3 DYNAMICS ARE PRESENT IN THIS SYSTEM, DESCRIBED IN THE PRIMARY REMARK 3 CITATION, AND THE REPORTED STRUCTURE MERELY REPRESENTS THE REMARK 3 EFFECTIVE AVERAGE CONFORMATION OF THE MOLECULE. REMARK 4 REMARK 4 1XQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030638. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.2 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 115 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM ALPHA-SYNUCLEIN 2H, 13C, REMARK 210 15N REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCO-QJ; HN(CO)CA-QJ; HNCO-JNH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 2.9.5 REMARK 210 METHOD USED : MOLECULAR FRAGMENT REPLACEMENT, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : AVERAGE STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 122 H ALA A 124 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 95 101.52 -52.18 REMARK 500 LYS A 96 163.31 -46.73 REMARK 500 GLN A 99 -30.10 -175.72 REMARK 500 LYS A 102 90.03 48.10 REMARK 500 GLU A 105 120.48 168.47 REMARK 500 GLN A 109 -109.53 -57.01 REMARK 500 GLU A 110 -17.46 -171.13 REMARK 500 GLU A 114 -3.87 -54.43 REMARK 500 ASN A 122 30.68 -170.31 REMARK 500 GLU A 123 -52.52 66.99 REMARK 500 ALA A 124 -139.70 -156.57 REMARK 500 TYR A 125 -72.31 -53.41 REMARK 500 GLU A 126 88.83 -151.08 REMARK 500 MET A 127 -171.21 52.67 REMARK 500 GLU A 130 -149.52 35.41 REMARK 500 TYR A 133 -77.99 56.83 REMARK 500 ASP A 135 -17.92 -163.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 THE SECONDARY STRUCTURE OF THIS PROTEIN WAS REMARK 650 AUTHOR DETERMINED DBREF 1XQ8 A 1 140 UNP P37840 SYUA_HUMAN 1 140 SEQRES 1 A 140 MET ASP VAL PHE MET LYS GLY LEU SER LYS ALA LYS GLU SEQRES 2 A 140 GLY VAL VAL ALA ALA ALA GLU LYS THR LYS GLN GLY VAL SEQRES 3 A 140 ALA GLU ALA ALA GLY LYS THR LYS GLU GLY VAL LEU TYR SEQRES 4 A 140 VAL GLY SER LYS THR LYS GLU GLY VAL VAL HIS GLY VAL SEQRES 5 A 140 ALA THR VAL ALA GLU LYS THR LYS GLU GLN VAL THR ASN SEQRES 6 A 140 VAL GLY GLY ALA VAL VAL THR GLY VAL THR ALA VAL ALA SEQRES 7 A 140 GLN LYS THR VAL GLU GLY ALA GLY SER ILE ALA ALA ALA SEQRES 8 A 140 THR GLY PHE VAL LYS LYS ASP GLN LEU GLY LYS ASN GLU SEQRES 9 A 140 GLU GLY ALA PRO GLN GLU GLY ILE LEU GLU ASP MET PRO SEQRES 10 A 140 VAL ASP PRO ASP ASN GLU ALA TYR GLU MET PRO SER GLU SEQRES 11 A 140 GLU GLY TYR GLN ASP TYR GLU PRO GLU ALA HELIX 1 1 VAL A 3 VAL A 37 1 35 HELIX 2 2 LYS A 45 THR A 92 1 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000