data_1Y0U # _entry.id 1Y0U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1Y0U RCSB RCSB030973 WWPDB D_1000030973 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC5036 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Y0U _pdbx_database_status.recvd_initial_deposition_date 2004-11-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, Y.' 1 'Joachimiak, A.' 2 'Skarina, T.' 3 'Savchenko, A.' 4 'Edwards, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'Crystal Structure of the putative arsenical resistance operon repressor from Archaeoglobus fulgidus' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, Y.' 1 primary 'Joachimiak, A.' 2 primary 'Skarina, T.' 3 primary 'Savchenko, A.' 4 primary 'Edwards, A.' 5 # _cell.entry_id 1Y0U _cell.length_a 36.741 _cell.length_b 43.244 _cell.length_c 61.674 _cell.angle_alpha 90.00 _cell.angle_beta 96.13 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1Y0U _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'arsenical resistance operon repressor, putative' 11326.562 2 ? ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 water nat water 18.015 263 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GH(MSE)SLEEWIKADSLEKADEYHKRYNYAVTNPVRRKILR(MSE)LDKGRSEEEI(MSE)QTLSLSKKQLDYHLKVLE AGFCIERVGERWVVTDAGKIVDKIRGGS ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMSLEEWIKADSLEKADEYHKRYNYAVTNPVRRKILRMLDKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVGERW VVTDAGKIVDKIRGGS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC5036 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MSE n 1 4 SER n 1 5 LEU n 1 6 GLU n 1 7 GLU n 1 8 TRP n 1 9 ILE n 1 10 LYS n 1 11 ALA n 1 12 ASP n 1 13 SER n 1 14 LEU n 1 15 GLU n 1 16 LYS n 1 17 ALA n 1 18 ASP n 1 19 GLU n 1 20 TYR n 1 21 HIS n 1 22 LYS n 1 23 ARG n 1 24 TYR n 1 25 ASN n 1 26 TYR n 1 27 ALA n 1 28 VAL n 1 29 THR n 1 30 ASN n 1 31 PRO n 1 32 VAL n 1 33 ARG n 1 34 ARG n 1 35 LYS n 1 36 ILE n 1 37 LEU n 1 38 ARG n 1 39 MSE n 1 40 LEU n 1 41 ASP n 1 42 LYS n 1 43 GLY n 1 44 ARG n 1 45 SER n 1 46 GLU n 1 47 GLU n 1 48 GLU n 1 49 ILE n 1 50 MSE n 1 51 GLN n 1 52 THR n 1 53 LEU n 1 54 SER n 1 55 LEU n 1 56 SER n 1 57 LYS n 1 58 LYS n 1 59 GLN n 1 60 LEU n 1 61 ASP n 1 62 TYR n 1 63 HIS n 1 64 LEU n 1 65 LYS n 1 66 VAL n 1 67 LEU n 1 68 GLU n 1 69 ALA n 1 70 GLY n 1 71 PHE n 1 72 CYS n 1 73 ILE n 1 74 GLU n 1 75 ARG n 1 76 VAL n 1 77 GLY n 1 78 GLU n 1 79 ARG n 1 80 TRP n 1 81 VAL n 1 82 VAL n 1 83 THR n 1 84 ASP n 1 85 ALA n 1 86 GLY n 1 87 LYS n 1 88 ILE n 1 89 VAL n 1 90 ASP n 1 91 LYS n 1 92 ILE n 1 93 ARG n 1 94 GLY n 1 95 GLY n 1 96 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Archaeoglobus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Archaeoglobus fulgidus' _entity_src_gen.gene_src_strain 'DSM 4304' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Archaeoglobus fulgidus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224325 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'Plasmid contaning T7 promoter' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'modified pET15b' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O30069_ARCFU _struct_ref.pdbx_db_accession O30069 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSLEEWIKADSLEKADEYHKRYNYAVTNPVRRKILRMLDKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVGERWVV TDAGKIVDKIRG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1Y0U A 3 ? 94 ? O30069 1 ? 92 ? 1 92 2 1 1Y0U B 3 ? 94 ? O30069 1 ? 92 ? 1 92 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Y0U GLY A 1 ? UNP O30069 ? ? 'CLONING ARTIFACT' -1 1 1 1Y0U HIS A 2 ? UNP O30069 ? ? 'CLONING ARTIFACT' 0 2 1 1Y0U MSE A 3 ? UNP O30069 MET 1 'MODIFIED RESIDUE' 1 3 1 1Y0U MSE A 39 ? UNP O30069 MET 37 'MODIFIED RESIDUE' 37 4 1 1Y0U MSE A 50 ? UNP O30069 MET 48 'MODIFIED RESIDUE' 48 5 1 1Y0U GLY A 95 ? UNP O30069 ? ? 'CLONING ARTIFACT' 93 6 1 1Y0U SER A 96 ? UNP O30069 ? ? 'CLONING ARTIFACT' 94 7 2 1Y0U GLY B 1 ? UNP O30069 ? ? 'CLONING ARTIFACT' -1 8 2 1Y0U HIS B 2 ? UNP O30069 ? ? 'CLONING ARTIFACT' 0 9 2 1Y0U MSE B 3 ? UNP O30069 MET 1 'MODIFIED RESIDUE' 1 10 2 1Y0U MSE B 39 ? UNP O30069 MET 37 'MODIFIED RESIDUE' 37 11 2 1Y0U MSE B 50 ? UNP O30069 MET 48 'MODIFIED RESIDUE' 48 12 2 1Y0U GLY B 95 ? UNP O30069 ? ? 'CLONING ARTIFACT' 93 13 2 1Y0U SER B 96 ? UNP O30069 ? ? 'CLONING ARTIFACT' 94 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Y0U _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_percent_sol 36.9 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details 'PEG 3350, sodium acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-3 _diffrn_detector.pdbx_collection_date 2004-07-21 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97916 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97916 # _reflns.entry_id 1Y0U _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.60 _reflns.d_resolution_low 61.31 _reflns.number_all 25483 _reflns.number_obs 22399 _reflns.percent_possible_obs 87.9 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 45.9 _reflns_shell.Rmerge_I_obs 0.286 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.1 _reflns_shell.pdbx_redundancy 5.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1156 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1Y0U _refine.ls_number_reflns_obs 20973 _refine.ls_number_reflns_all 20973 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 61.31 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 86.50 _refine.ls_R_factor_obs 0.17331 _refine.ls_R_factor_all 0.17331 _refine.ls_R_factor_R_work 0.17172 _refine.ls_R_factor_R_free 0.20144 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1123 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.B_iso_mean 15.174 _refine.aniso_B[1][1] 0.76 _refine.aniso_B[2][2] -0.74 _refine.aniso_B[3][3] 0.14 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.76 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.108 _refine.pdbx_overall_ESU_R_Free 0.102 _refine.overall_SU_ML 0.056 _refine.overall_SU_B 1.539 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1459 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 263 _refine_hist.number_atoms_total 1726 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 61.31 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 1630 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.122 1.967 ? 2207 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.253 5.000 ? 214 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.268 22.963 ? 81 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.812 15.000 ? 354 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.144 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr 0.077 0.200 ? 235 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1214 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.203 0.200 ? 793 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.300 0.200 ? 1105 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.135 0.200 ? 194 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.226 0.200 ? 93 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.244 0.200 ? 51 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.958 1.500 ? 968 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.281 2.000 ? 1528 'X-RAY DIFFRACTION' ? r_scbond_it 2.299 3.000 ? 755 'X-RAY DIFFRACTION' ? r_scangle_it 3.534 4.500 ? 659 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.601 _refine_ls_shell.d_res_low 1.642 _refine_ls_shell.number_reflns_R_work 713 _refine_ls_shell.R_factor_R_work 0.229 _refine_ls_shell.percent_reflns_obs 40.79 _refine_ls_shell.R_factor_R_free 0.273 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 38 _refine_ls_shell.number_reflns_obs 713 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1Y0U _struct.title 'Crystal Structure of the putative arsenical resistance operon repressor from Archaeoglobus fulgidus' _struct.pdbx_descriptor 'arsenical resistance operon repressor, putative' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Y0U _struct_keywords.pdbx_keywords 'TRANSCRIPTION REPRESSOR' _struct_keywords.text ;Structural Genomics, Protein Structure Initiative, PSI, Midwest Center For Structural Genomocs, MCSG, Arsenical Resistance Operon Repressor, HTH_ARSR, DNA-binding protein, Midwest Center for Structural Genomics, TRANSCRIPTION REPRESSOR ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? MSE A 3 ? GLY A -1 MSE A 1 5 ? 3 HELX_P HELX_P2 2 SER A 4 ? THR A 29 ? SER A 2 THR A 27 1 ? 26 HELX_P HELX_P3 3 ASN A 30 ? LYS A 42 ? ASN A 28 LYS A 40 1 ? 13 HELX_P HELX_P4 4 SER A 45 ? SER A 54 ? SER A 43 SER A 52 1 ? 10 HELX_P HELX_P5 5 SER A 56 ? GLY A 70 ? SER A 54 GLY A 68 1 ? 15 HELX_P HELX_P6 6 GLY B 1 ? THR B 29 ? GLY B -1 THR B 27 1 ? 29 HELX_P HELX_P7 7 ASN B 30 ? LYS B 42 ? ASN B 28 LYS B 40 1 ? 13 HELX_P HELX_P8 8 SER B 45 ? SER B 54 ? SER B 43 SER B 52 1 ? 10 HELX_P HELX_P9 9 SER B 56 ? GLY B 70 ? SER B 54 GLY B 68 1 ? 15 HELX_P HELX_P10 10 ASP B 84 ? LYS B 87 ? ASP B 82 LYS B 85 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 2 C ? ? ? 1_555 A MSE 3 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A MSE 3 C ? ? ? 1_555 A SER 4 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A ARG 38 C ? ? ? 1_555 A MSE 39 N ? ? A ARG 36 A MSE 37 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale ? ? A MSE 39 C ? ? ? 1_555 A LEU 40 N ? ? A MSE 37 A LEU 38 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A ILE 49 C ? ? ? 1_555 A MSE 50 N ? ? A ILE 47 A MSE 48 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 50 C ? ? ? 1_555 A GLN 51 N ? ? A MSE 48 A GLN 49 1_555 ? ? ? ? ? ? ? 1.330 ? covale7 covale ? ? B HIS 2 C ? ? ? 1_555 B MSE 3 N ? ? B HIS 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.334 ? covale8 covale ? ? B MSE 3 C ? ? ? 1_555 B SER 4 N ? ? B MSE 1 B SER 2 1_555 ? ? ? ? ? ? ? 1.335 ? covale9 covale ? ? B ARG 38 C ? ? ? 1_555 B MSE 39 N ? ? B ARG 36 B MSE 37 1_555 ? ? ? ? ? ? ? 1.338 ? covale10 covale ? ? B MSE 39 C ? ? ? 1_555 B LEU 40 N ? ? B MSE 37 B LEU 38 1_555 ? ? ? ? ? ? ? 1.336 ? covale11 covale ? ? B ILE 49 C ? ? ? 1_555 B MSE 50 N ? ? B ILE 47 B MSE 48 1_555 ? ? ? ? ? ? ? 1.334 ? covale12 covale ? ? B MSE 50 C ? ? ? 1_555 B GLN 51 N ? ? B MSE 48 B GLN 49 1_555 ? ? ? ? ? ? ? 1.334 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 73 ? VAL A 76 ? ILE A 71 VAL A 74 A 2 ARG A 79 ? VAL A 82 ? ARG A 77 VAL A 80 B 1 ILE B 73 ? VAL B 76 ? ILE B 71 VAL B 74 B 2 ARG B 79 ? VAL B 82 ? ARG B 77 VAL B 80 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 74 ? N GLU A 72 O VAL A 81 ? O VAL A 79 B 1 2 N VAL B 76 ? N VAL B 74 O ARG B 79 ? O ARG B 77 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE ACT B 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLU B 15 ? GLU B 13 . ? 1_555 ? 2 AC1 2 HOH E . ? HOH B 375 . ? 1_555 ? # _database_PDB_matrix.entry_id 1Y0U _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Y0U _atom_sites.fract_transf_matrix[1][1] 0.027218 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002924 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023125 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016308 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 -1 GLY GLY A . n A 1 2 HIS 2 0 0 HIS HIS A . n A 1 3 MSE 3 1 1 MSE MSE A . n A 1 4 SER 4 2 2 SER SER A . n A 1 5 LEU 5 3 3 LEU LEU A . n A 1 6 GLU 6 4 4 GLU GLU A . n A 1 7 GLU 7 5 5 GLU GLU A . n A 1 8 TRP 8 6 6 TRP TRP A . n A 1 9 ILE 9 7 7 ILE ILE A . n A 1 10 LYS 10 8 8 LYS LYS A . n A 1 11 ALA 11 9 9 ALA ALA A . n A 1 12 ASP 12 10 10 ASP ASP A . n A 1 13 SER 13 11 11 SER SER A . n A 1 14 LEU 14 12 12 LEU LEU A . n A 1 15 GLU 15 13 13 GLU GLU A . n A 1 16 LYS 16 14 14 LYS LYS A . n A 1 17 ALA 17 15 15 ALA ALA A . n A 1 18 ASP 18 16 16 ASP ASP A . n A 1 19 GLU 19 17 17 GLU GLU A . n A 1 20 TYR 20 18 18 TYR TYR A . n A 1 21 HIS 21 19 19 HIS HIS A . n A 1 22 LYS 22 20 20 LYS LYS A . n A 1 23 ARG 23 21 21 ARG ARG A . n A 1 24 TYR 24 22 22 TYR TYR A . n A 1 25 ASN 25 23 23 ASN ASN A . n A 1 26 TYR 26 24 24 TYR TYR A . n A 1 27 ALA 27 25 25 ALA ALA A . n A 1 28 VAL 28 26 26 VAL VAL A . n A 1 29 THR 29 27 27 THR THR A . n A 1 30 ASN 30 28 28 ASN ASN A . n A 1 31 PRO 31 29 29 PRO PRO A . n A 1 32 VAL 32 30 30 VAL VAL A . n A 1 33 ARG 33 31 31 ARG ARG A . n A 1 34 ARG 34 32 32 ARG ARG A . n A 1 35 LYS 35 33 33 LYS LYS A . n A 1 36 ILE 36 34 34 ILE ILE A . n A 1 37 LEU 37 35 35 LEU LEU A . n A 1 38 ARG 38 36 36 ARG ARG A . n A 1 39 MSE 39 37 37 MSE MSE A . n A 1 40 LEU 40 38 38 LEU LEU A . n A 1 41 ASP 41 39 39 ASP ASP A . n A 1 42 LYS 42 40 40 LYS LYS A . n A 1 43 GLY 43 41 41 GLY GLY A . n A 1 44 ARG 44 42 42 ARG ARG A . n A 1 45 SER 45 43 43 SER SER A . n A 1 46 GLU 46 44 44 GLU GLU A . n A 1 47 GLU 47 45 45 GLU GLU A . n A 1 48 GLU 48 46 46 GLU GLU A . n A 1 49 ILE 49 47 47 ILE ILE A . n A 1 50 MSE 50 48 48 MSE MSE A . n A 1 51 GLN 51 49 49 GLN GLN A . n A 1 52 THR 52 50 50 THR THR A . n A 1 53 LEU 53 51 51 LEU LEU A . n A 1 54 SER 54 52 52 SER SER A . n A 1 55 LEU 55 53 53 LEU LEU A . n A 1 56 SER 56 54 54 SER SER A . n A 1 57 LYS 57 55 55 LYS LYS A . n A 1 58 LYS 58 56 56 LYS LYS A . n A 1 59 GLN 59 57 57 GLN GLN A . n A 1 60 LEU 60 58 58 LEU LEU A . n A 1 61 ASP 61 59 59 ASP ASP A . n A 1 62 TYR 62 60 60 TYR TYR A . n A 1 63 HIS 63 61 61 HIS HIS A . n A 1 64 LEU 64 62 62 LEU LEU A . n A 1 65 LYS 65 63 63 LYS LYS A . n A 1 66 VAL 66 64 64 VAL VAL A . n A 1 67 LEU 67 65 65 LEU LEU A . n A 1 68 GLU 68 66 66 GLU GLU A . n A 1 69 ALA 69 67 67 ALA ALA A . n A 1 70 GLY 70 68 68 GLY GLY A . n A 1 71 PHE 71 69 69 PHE PHE A . n A 1 72 CYS 72 70 70 CYS CYS A . n A 1 73 ILE 73 71 71 ILE ILE A . n A 1 74 GLU 74 72 72 GLU GLU A . n A 1 75 ARG 75 73 73 ARG ARG A . n A 1 76 VAL 76 74 74 VAL VAL A . n A 1 77 GLY 77 75 75 GLY GLY A . n A 1 78 GLU 78 76 76 GLU GLU A . n A 1 79 ARG 79 77 77 ARG ARG A . n A 1 80 TRP 80 78 78 TRP TRP A . n A 1 81 VAL 81 79 79 VAL VAL A . n A 1 82 VAL 82 80 80 VAL VAL A . n A 1 83 THR 83 81 81 THR THR A . n A 1 84 ASP 84 82 82 ASP ASP A . n A 1 85 ALA 85 83 83 ALA ALA A . n A 1 86 GLY 86 84 84 GLY GLY A . n A 1 87 LYS 87 85 85 LYS LYS A . n A 1 88 ILE 88 86 86 ILE ILE A . n A 1 89 VAL 89 87 87 VAL VAL A . n A 1 90 ASP 90 88 ? ? ? A . n A 1 91 LYS 91 89 ? ? ? A . n A 1 92 ILE 92 90 ? ? ? A . n A 1 93 ARG 93 91 ? ? ? A . n A 1 94 GLY 94 92 ? ? ? A . n A 1 95 GLY 95 93 ? ? ? A . n A 1 96 SER 96 94 ? ? ? A . n B 1 1 GLY 1 -1 -1 GLY GLY B . n B 1 2 HIS 2 0 0 HIS HIS B . n B 1 3 MSE 3 1 1 MSE MSE B . n B 1 4 SER 4 2 2 SER SER B . n B 1 5 LEU 5 3 3 LEU LEU B . n B 1 6 GLU 6 4 4 GLU GLU B . n B 1 7 GLU 7 5 5 GLU GLU B . n B 1 8 TRP 8 6 6 TRP TRP B . n B 1 9 ILE 9 7 7 ILE ILE B . n B 1 10 LYS 10 8 8 LYS LYS B . n B 1 11 ALA 11 9 9 ALA ALA B . n B 1 12 ASP 12 10 10 ASP ASP B . n B 1 13 SER 13 11 11 SER SER B . n B 1 14 LEU 14 12 12 LEU LEU B . n B 1 15 GLU 15 13 13 GLU GLU B . n B 1 16 LYS 16 14 14 LYS LYS B . n B 1 17 ALA 17 15 15 ALA ALA B . n B 1 18 ASP 18 16 16 ASP ASP B . n B 1 19 GLU 19 17 17 GLU GLU B . n B 1 20 TYR 20 18 18 TYR TYR B . n B 1 21 HIS 21 19 19 HIS HIS B . n B 1 22 LYS 22 20 20 LYS LYS B . n B 1 23 ARG 23 21 21 ARG ARG B . n B 1 24 TYR 24 22 22 TYR TYR B . n B 1 25 ASN 25 23 23 ASN ASN B . n B 1 26 TYR 26 24 24 TYR TYR B . n B 1 27 ALA 27 25 25 ALA ALA B . n B 1 28 VAL 28 26 26 VAL VAL B . n B 1 29 THR 29 27 27 THR THR B . n B 1 30 ASN 30 28 28 ASN ASN B . n B 1 31 PRO 31 29 29 PRO PRO B . n B 1 32 VAL 32 30 30 VAL VAL B . n B 1 33 ARG 33 31 31 ARG ARG B . n B 1 34 ARG 34 32 32 ARG ARG B . n B 1 35 LYS 35 33 33 LYS LYS B . n B 1 36 ILE 36 34 34 ILE ILE B . n B 1 37 LEU 37 35 35 LEU LEU B . n B 1 38 ARG 38 36 36 ARG ARG B . n B 1 39 MSE 39 37 37 MSE MSE B . n B 1 40 LEU 40 38 38 LEU LEU B . n B 1 41 ASP 41 39 39 ASP ASP B . n B 1 42 LYS 42 40 40 LYS LYS B . n B 1 43 GLY 43 41 41 GLY GLY B . n B 1 44 ARG 44 42 42 ARG ARG B . n B 1 45 SER 45 43 43 SER SER B . n B 1 46 GLU 46 44 44 GLU GLU B . n B 1 47 GLU 47 45 45 GLU GLU B . n B 1 48 GLU 48 46 46 GLU GLU B . n B 1 49 ILE 49 47 47 ILE ILE B . n B 1 50 MSE 50 48 48 MSE MSE B . n B 1 51 GLN 51 49 49 GLN GLN B . n B 1 52 THR 52 50 50 THR THR B . n B 1 53 LEU 53 51 51 LEU LEU B . n B 1 54 SER 54 52 52 SER SER B . n B 1 55 LEU 55 53 53 LEU LEU B . n B 1 56 SER 56 54 54 SER SER B . n B 1 57 LYS 57 55 55 LYS LYS B . n B 1 58 LYS 58 56 56 LYS LYS B . n B 1 59 GLN 59 57 57 GLN GLN B . n B 1 60 LEU 60 58 58 LEU LEU B . n B 1 61 ASP 61 59 59 ASP ASP B . n B 1 62 TYR 62 60 60 TYR TYR B . n B 1 63 HIS 63 61 61 HIS HIS B . n B 1 64 LEU 64 62 62 LEU LEU B . n B 1 65 LYS 65 63 63 LYS LYS B . n B 1 66 VAL 66 64 64 VAL VAL B . n B 1 67 LEU 67 65 65 LEU LEU B . n B 1 68 GLU 68 66 66 GLU GLU B . n B 1 69 ALA 69 67 67 ALA ALA B . n B 1 70 GLY 70 68 68 GLY GLY B . n B 1 71 PHE 71 69 69 PHE PHE B . n B 1 72 CYS 72 70 70 CYS CYS B . n B 1 73 ILE 73 71 71 ILE ILE B . n B 1 74 GLU 74 72 72 GLU GLU B . n B 1 75 ARG 75 73 73 ARG ARG B . n B 1 76 VAL 76 74 74 VAL VAL B . n B 1 77 GLY 77 75 75 GLY GLY B . n B 1 78 GLU 78 76 76 GLU GLU B . n B 1 79 ARG 79 77 77 ARG ARG B . n B 1 80 TRP 80 78 78 TRP TRP B . n B 1 81 VAL 81 79 79 VAL VAL B . n B 1 82 VAL 82 80 80 VAL VAL B . n B 1 83 THR 83 81 81 THR THR B . n B 1 84 ASP 84 82 82 ASP ASP B . n B 1 85 ALA 85 83 83 ALA ALA B . n B 1 86 GLY 86 84 84 GLY GLY B . n B 1 87 LYS 87 85 85 LYS LYS B . n B 1 88 ILE 88 86 86 ILE ILE B . n B 1 89 VAL 89 87 ? ? ? B . n B 1 90 ASP 90 88 ? ? ? B . n B 1 91 LYS 91 89 ? ? ? B . n B 1 92 ILE 92 90 ? ? ? B . n B 1 93 ARG 93 91 ? ? ? B . n B 1 94 GLY 94 92 ? ? ? B . n B 1 95 GLY 95 93 ? ? ? B . n B 1 96 SER 96 94 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 3 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 39 A MSE 37 ? MET SELENOMETHIONINE 3 A MSE 50 A MSE 48 ? MET SELENOMETHIONINE 4 B MSE 3 B MSE 1 ? MET SELENOMETHIONINE 5 B MSE 39 B MSE 37 ? MET SELENOMETHIONINE 6 B MSE 50 B MSE 48 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1930 ? 1 MORE -17 ? 1 'SSA (A^2)' 11420 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-12-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-09-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Structure summary' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data scaling' . ? 3 HKL-3000 phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 27 ? ? -92.40 42.12 2 1 THR B 27 ? ? -96.87 48.86 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 88 ? A ASP 90 2 1 Y 1 A LYS 89 ? A LYS 91 3 1 Y 1 A ILE 90 ? A ILE 92 4 1 Y 1 A ARG 91 ? A ARG 93 5 1 Y 1 A GLY 92 ? A GLY 94 6 1 Y 1 A GLY 93 ? A GLY 95 7 1 Y 1 A SER 94 ? A SER 96 8 1 Y 1 B VAL 87 ? B VAL 89 9 1 Y 1 B ASP 88 ? B ASP 90 10 1 Y 1 B LYS 89 ? B LYS 91 11 1 Y 1 B ILE 90 ? B ILE 92 12 1 Y 1 B ARG 91 ? B ARG 93 13 1 Y 1 B GLY 92 ? B GLY 94 14 1 Y 1 B GLY 93 ? B GLY 95 15 1 Y 1 B SER 94 ? B SER 96 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT 1 301 101 ACT ACT B . D 3 HOH 1 95 5 HOH HOH A . D 3 HOH 2 96 11 HOH HOH A . D 3 HOH 3 97 12 HOH HOH A . D 3 HOH 4 98 13 HOH HOH A . D 3 HOH 5 99 16 HOH HOH A . D 3 HOH 6 100 17 HOH HOH A . D 3 HOH 7 101 18 HOH HOH A . D 3 HOH 8 102 21 HOH HOH A . D 3 HOH 9 103 22 HOH HOH A . D 3 HOH 10 104 24 HOH HOH A . D 3 HOH 11 105 25 HOH HOH A . D 3 HOH 12 106 26 HOH HOH A . D 3 HOH 13 107 27 HOH HOH A . D 3 HOH 14 108 30 HOH HOH A . D 3 HOH 15 109 31 HOH HOH A . D 3 HOH 16 110 34 HOH HOH A . D 3 HOH 17 111 35 HOH HOH A . D 3 HOH 18 112 36 HOH HOH A . D 3 HOH 19 113 40 HOH HOH A . D 3 HOH 20 114 42 HOH HOH A . D 3 HOH 21 115 43 HOH HOH A . D 3 HOH 22 116 44 HOH HOH A . D 3 HOH 23 117 46 HOH HOH A . D 3 HOH 24 118 47 HOH HOH A . D 3 HOH 25 119 50 HOH HOH A . D 3 HOH 26 120 51 HOH HOH A . D 3 HOH 27 121 52 HOH HOH A . D 3 HOH 28 122 55 HOH HOH A . D 3 HOH 29 123 58 HOH HOH A . D 3 HOH 30 124 59 HOH HOH A . D 3 HOH 31 125 60 HOH HOH A . D 3 HOH 32 126 61 HOH HOH A . D 3 HOH 33 127 65 HOH HOH A . D 3 HOH 34 128 66 HOH HOH A . D 3 HOH 35 129 71 HOH HOH A . D 3 HOH 36 130 72 HOH HOH A . D 3 HOH 37 131 74 HOH HOH A . D 3 HOH 38 132 76 HOH HOH A . D 3 HOH 39 133 79 HOH HOH A . D 3 HOH 40 134 80 HOH HOH A . D 3 HOH 41 135 81 HOH HOH A . D 3 HOH 42 136 83 HOH HOH A . D 3 HOH 43 137 84 HOH HOH A . D 3 HOH 44 138 90 HOH HOH A . D 3 HOH 45 139 92 HOH HOH A . D 3 HOH 46 140 93 HOH HOH A . D 3 HOH 47 141 96 HOH HOH A . D 3 HOH 48 142 102 HOH HOH A . D 3 HOH 49 143 106 HOH HOH A . D 3 HOH 50 144 110 HOH HOH A . D 3 HOH 51 145 111 HOH HOH A . D 3 HOH 52 146 114 HOH HOH A . D 3 HOH 53 147 115 HOH HOH A . D 3 HOH 54 148 120 HOH HOH A . D 3 HOH 55 149 123 HOH HOH A . D 3 HOH 56 150 125 HOH HOH A . D 3 HOH 57 151 126 HOH HOH A . D 3 HOH 58 152 129 HOH HOH A . D 3 HOH 59 153 130 HOH HOH A . D 3 HOH 60 154 136 HOH HOH A . D 3 HOH 61 155 137 HOH HOH A . D 3 HOH 62 156 138 HOH HOH A . D 3 HOH 63 157 139 HOH HOH A . D 3 HOH 64 158 140 HOH HOH A . D 3 HOH 65 159 143 HOH HOH A . D 3 HOH 66 160 150 HOH HOH A . D 3 HOH 67 161 153 HOH HOH A . D 3 HOH 68 162 154 HOH HOH A . D 3 HOH 69 163 155 HOH HOH A . D 3 HOH 70 164 156 HOH HOH A . D 3 HOH 71 165 159 HOH HOH A . D 3 HOH 72 166 162 HOH HOH A . D 3 HOH 73 167 165 HOH HOH A . D 3 HOH 74 168 167 HOH HOH A . D 3 HOH 75 169 168 HOH HOH A . D 3 HOH 76 170 169 HOH HOH A . D 3 HOH 77 171 170 HOH HOH A . D 3 HOH 78 172 174 HOH HOH A . D 3 HOH 79 173 175 HOH HOH A . D 3 HOH 80 174 176 HOH HOH A . D 3 HOH 81 175 177 HOH HOH A . D 3 HOH 82 176 178 HOH HOH A . D 3 HOH 83 177 181 HOH HOH A . D 3 HOH 84 178 188 HOH HOH A . D 3 HOH 85 179 191 HOH HOH A . D 3 HOH 86 180 198 HOH HOH A . D 3 HOH 87 181 203 HOH HOH A . D 3 HOH 88 182 204 HOH HOH A . D 3 HOH 89 183 205 HOH HOH A . D 3 HOH 90 184 206 HOH HOH A . D 3 HOH 91 185 208 HOH HOH A . D 3 HOH 92 186 211 HOH HOH A . D 3 HOH 93 187 213 HOH HOH A . D 3 HOH 94 188 214 HOH HOH A . D 3 HOH 95 189 215 HOH HOH A . D 3 HOH 96 190 217 HOH HOH A . D 3 HOH 97 191 218 HOH HOH A . D 3 HOH 98 192 219 HOH HOH A . D 3 HOH 99 193 220 HOH HOH A . D 3 HOH 100 194 222 HOH HOH A . D 3 HOH 101 195 226 HOH HOH A . D 3 HOH 102 196 228 HOH HOH A . D 3 HOH 103 197 229 HOH HOH A . D 3 HOH 104 198 231 HOH HOH A . D 3 HOH 105 199 232 HOH HOH A . D 3 HOH 106 200 233 HOH HOH A . D 3 HOH 107 201 237 HOH HOH A . D 3 HOH 108 202 239 HOH HOH A . D 3 HOH 109 203 241 HOH HOH A . D 3 HOH 110 204 245 HOH HOH A . D 3 HOH 111 205 246 HOH HOH A . D 3 HOH 112 206 247 HOH HOH A . D 3 HOH 113 207 251 HOH HOH A . D 3 HOH 114 208 252 HOH HOH A . D 3 HOH 115 209 254 HOH HOH A . D 3 HOH 116 210 255 HOH HOH A . D 3 HOH 117 211 256 HOH HOH A . D 3 HOH 118 212 257 HOH HOH A . D 3 HOH 119 213 258 HOH HOH A . D 3 HOH 120 214 259 HOH HOH A . D 3 HOH 121 215 260 HOH HOH A . D 3 HOH 122 216 261 HOH HOH A . D 3 HOH 123 217 262 HOH HOH A . D 3 HOH 124 218 263 HOH HOH A . E 3 HOH 1 302 1 HOH HOH B . E 3 HOH 2 303 2 HOH HOH B . E 3 HOH 3 304 3 HOH HOH B . E 3 HOH 4 305 4 HOH HOH B . E 3 HOH 5 306 6 HOH HOH B . E 3 HOH 6 307 7 HOH HOH B . E 3 HOH 7 308 8 HOH HOH B . E 3 HOH 8 309 9 HOH HOH B . E 3 HOH 9 310 10 HOH HOH B . E 3 HOH 10 311 14 HOH HOH B . E 3 HOH 11 312 15 HOH HOH B . E 3 HOH 12 313 19 HOH HOH B . E 3 HOH 13 314 20 HOH HOH B . E 3 HOH 14 315 23 HOH HOH B . E 3 HOH 15 316 28 HOH HOH B . E 3 HOH 16 317 29 HOH HOH B . E 3 HOH 17 318 32 HOH HOH B . E 3 HOH 18 319 33 HOH HOH B . E 3 HOH 19 320 37 HOH HOH B . E 3 HOH 20 321 38 HOH HOH B . E 3 HOH 21 322 39 HOH HOH B . E 3 HOH 22 323 41 HOH HOH B . E 3 HOH 23 324 45 HOH HOH B . E 3 HOH 24 325 48 HOH HOH B . E 3 HOH 25 326 49 HOH HOH B . E 3 HOH 26 327 53 HOH HOH B . E 3 HOH 27 328 54 HOH HOH B . E 3 HOH 28 329 56 HOH HOH B . E 3 HOH 29 330 57 HOH HOH B . E 3 HOH 30 331 62 HOH HOH B . E 3 HOH 31 332 63 HOH HOH B . E 3 HOH 32 333 64 HOH HOH B . E 3 HOH 33 334 67 HOH HOH B . E 3 HOH 34 335 68 HOH HOH B . E 3 HOH 35 336 69 HOH HOH B . E 3 HOH 36 337 70 HOH HOH B . E 3 HOH 37 338 73 HOH HOH B . E 3 HOH 38 339 75 HOH HOH B . E 3 HOH 39 340 77 HOH HOH B . E 3 HOH 40 341 78 HOH HOH B . E 3 HOH 41 342 82 HOH HOH B . E 3 HOH 42 343 85 HOH HOH B . E 3 HOH 43 344 86 HOH HOH B . E 3 HOH 44 345 87 HOH HOH B . E 3 HOH 45 346 88 HOH HOH B . E 3 HOH 46 347 89 HOH HOH B . E 3 HOH 47 348 91 HOH HOH B . E 3 HOH 48 349 94 HOH HOH B . E 3 HOH 49 350 95 HOH HOH B . E 3 HOH 50 351 97 HOH HOH B . E 3 HOH 51 352 98 HOH HOH B . E 3 HOH 52 353 99 HOH HOH B . E 3 HOH 53 354 100 HOH HOH B . E 3 HOH 54 355 101 HOH HOH B . E 3 HOH 55 356 103 HOH HOH B . E 3 HOH 56 357 104 HOH HOH B . E 3 HOH 57 358 105 HOH HOH B . E 3 HOH 58 359 107 HOH HOH B . E 3 HOH 59 360 108 HOH HOH B . E 3 HOH 60 361 109 HOH HOH B . E 3 HOH 61 362 112 HOH HOH B . E 3 HOH 62 363 113 HOH HOH B . E 3 HOH 63 364 116 HOH HOH B . E 3 HOH 64 365 117 HOH HOH B . E 3 HOH 65 366 118 HOH HOH B . E 3 HOH 66 367 119 HOH HOH B . E 3 HOH 67 368 121 HOH HOH B . E 3 HOH 68 369 122 HOH HOH B . E 3 HOH 69 370 124 HOH HOH B . E 3 HOH 70 371 127 HOH HOH B . E 3 HOH 71 372 128 HOH HOH B . E 3 HOH 72 373 131 HOH HOH B . E 3 HOH 73 374 132 HOH HOH B . E 3 HOH 74 375 133 HOH HOH B . E 3 HOH 75 376 134 HOH HOH B . E 3 HOH 76 377 135 HOH HOH B . E 3 HOH 77 378 141 HOH HOH B . E 3 HOH 78 379 142 HOH HOH B . E 3 HOH 79 380 144 HOH HOH B . E 3 HOH 80 381 145 HOH HOH B . E 3 HOH 81 382 146 HOH HOH B . E 3 HOH 82 383 147 HOH HOH B . E 3 HOH 83 384 148 HOH HOH B . E 3 HOH 84 385 149 HOH HOH B . E 3 HOH 85 386 151 HOH HOH B . E 3 HOH 86 387 152 HOH HOH B . E 3 HOH 87 388 157 HOH HOH B . E 3 HOH 88 389 158 HOH HOH B . E 3 HOH 89 390 160 HOH HOH B . E 3 HOH 90 391 161 HOH HOH B . E 3 HOH 91 392 163 HOH HOH B . E 3 HOH 92 393 164 HOH HOH B . E 3 HOH 93 394 166 HOH HOH B . E 3 HOH 94 395 171 HOH HOH B . E 3 HOH 95 396 172 HOH HOH B . E 3 HOH 96 397 173 HOH HOH B . E 3 HOH 97 398 179 HOH HOH B . E 3 HOH 98 399 180 HOH HOH B . E 3 HOH 99 400 182 HOH HOH B . E 3 HOH 100 401 183 HOH HOH B . E 3 HOH 101 402 184 HOH HOH B . E 3 HOH 102 403 185 HOH HOH B . E 3 HOH 103 404 186 HOH HOH B . E 3 HOH 104 405 187 HOH HOH B . E 3 HOH 105 406 189 HOH HOH B . E 3 HOH 106 407 190 HOH HOH B . E 3 HOH 107 408 192 HOH HOH B . E 3 HOH 108 409 193 HOH HOH B . E 3 HOH 109 410 194 HOH HOH B . E 3 HOH 110 411 195 HOH HOH B . E 3 HOH 111 412 196 HOH HOH B . E 3 HOH 112 413 197 HOH HOH B . E 3 HOH 113 414 199 HOH HOH B . E 3 HOH 114 415 200 HOH HOH B . E 3 HOH 115 416 201 HOH HOH B . E 3 HOH 116 417 202 HOH HOH B . E 3 HOH 117 418 207 HOH HOH B . E 3 HOH 118 419 209 HOH HOH B . E 3 HOH 119 420 210 HOH HOH B . E 3 HOH 120 421 212 HOH HOH B . E 3 HOH 121 422 216 HOH HOH B . E 3 HOH 122 423 221 HOH HOH B . E 3 HOH 123 424 223 HOH HOH B . E 3 HOH 124 425 224 HOH HOH B . E 3 HOH 125 426 225 HOH HOH B . E 3 HOH 126 427 227 HOH HOH B . E 3 HOH 127 428 230 HOH HOH B . E 3 HOH 128 429 234 HOH HOH B . E 3 HOH 129 430 235 HOH HOH B . E 3 HOH 130 431 236 HOH HOH B . E 3 HOH 131 432 238 HOH HOH B . E 3 HOH 132 433 240 HOH HOH B . E 3 HOH 133 434 242 HOH HOH B . E 3 HOH 134 435 243 HOH HOH B . E 3 HOH 135 436 244 HOH HOH B . E 3 HOH 136 437 248 HOH HOH B . E 3 HOH 137 438 249 HOH HOH B . E 3 HOH 138 439 250 HOH HOH B . E 3 HOH 139 440 253 HOH HOH B . #