data_1Y2F # _entry.id 1Y2F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Y2F pdb_00001y2f 10.2210/pdb1y2f/pdb RCSB RCSB031030 ? ? WWPDB D_1000031030 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1Y2G _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Y2F _pdbx_database_status.recvd_initial_deposition_date 2004-11-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mosyak, L.' 1 'Rush, T.S.' 2 # _citation.id primary _citation.title 'A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 48 _citation.page_first 1489 _citation.page_last 1495 _citation.year 2005 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15743191 _citation.pdbx_database_id_DOI 10.1021/jm040163o # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rush, T.S.' 1 ? primary 'Grant, J.A.' 2 ? primary 'Mosyak, L.' 3 ? primary 'Nicholls, A.' 4 ? # _cell.entry_id 1Y2F _cell.length_a 44.973 _cell.length_b 50.614 _cell.length_c 84.399 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y2F _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cell division protein zipA' 15533.670 1 ? ? ? ? 2 non-polymer syn '4-{2-[4-(2-AMINOETHYL)PIPERAZIN-1-YL]PYRIDIN-4-YL}-N-(3-CHLORO-4-METHYLPHENYL)PYRIMIDIN-2-AMINE' 423.942 1 ? ? ? ? 3 water nat water 18.015 223 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RKEAVIIMNVAAHHGSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIF MQVPSYGDELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA ; _entity_poly.pdbx_seq_one_letter_code_can ;RKEAVIIMNVAAHHGSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIF MQVPSYGDELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 LYS n 1 3 GLU n 1 4 ALA n 1 5 VAL n 1 6 ILE n 1 7 ILE n 1 8 MET n 1 9 ASN n 1 10 VAL n 1 11 ALA n 1 12 ALA n 1 13 HIS n 1 14 HIS n 1 15 GLY n 1 16 SER n 1 17 GLU n 1 18 LEU n 1 19 ASN n 1 20 GLY n 1 21 GLU n 1 22 LEU n 1 23 LEU n 1 24 LEU n 1 25 ASN n 1 26 SER n 1 27 ILE n 1 28 GLN n 1 29 GLN n 1 30 ALA n 1 31 GLY n 1 32 PHE n 1 33 ILE n 1 34 PHE n 1 35 GLY n 1 36 ASP n 1 37 MET n 1 38 ASN n 1 39 ILE n 1 40 TYR n 1 41 HIS n 1 42 ARG n 1 43 HIS n 1 44 LEU n 1 45 SER n 1 46 PRO n 1 47 ASP n 1 48 GLY n 1 49 SER n 1 50 GLY n 1 51 PRO n 1 52 ALA n 1 53 LEU n 1 54 PHE n 1 55 SER n 1 56 LEU n 1 57 ALA n 1 58 ASN n 1 59 MET n 1 60 VAL n 1 61 LYS n 1 62 PRO n 1 63 GLY n 1 64 THR n 1 65 PHE n 1 66 ASP n 1 67 PRO n 1 68 GLU n 1 69 MET n 1 70 LYS n 1 71 ASP n 1 72 PHE n 1 73 THR n 1 74 THR n 1 75 PRO n 1 76 GLY n 1 77 VAL n 1 78 THR n 1 79 ILE n 1 80 PHE n 1 81 MET n 1 82 GLN n 1 83 VAL n 1 84 PRO n 1 85 SER n 1 86 TYR n 1 87 GLY n 1 88 ASP n 1 89 GLU n 1 90 LEU n 1 91 GLN n 1 92 ASN n 1 93 PHE n 1 94 LYS n 1 95 LEU n 1 96 MET n 1 97 LEU n 1 98 GLN n 1 99 SER n 1 100 ALA n 1 101 GLN n 1 102 HIS n 1 103 ILE n 1 104 ALA n 1 105 ASP n 1 106 GLU n 1 107 VAL n 1 108 GLY n 1 109 GLY n 1 110 VAL n 1 111 VAL n 1 112 LEU n 1 113 ASP n 1 114 ASP n 1 115 GLN n 1 116 ARG n 1 117 ARG n 1 118 MET n 1 119 MET n 1 120 THR n 1 121 PRO n 1 122 GLN n 1 123 LYS n 1 124 LEU n 1 125 ARG n 1 126 GLU n 1 127 TYR n 1 128 GLN n 1 129 ASP n 1 130 ILE n 1 131 ILE n 1 132 ARG n 1 133 GLU n 1 134 VAL n 1 135 LYS n 1 136 ASP n 1 137 ALA n 1 138 ASN n 1 139 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ZIPA_ECOLI _struct_ref.pdbx_db_accession P77173 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RKEAVIIMNVAAHHGSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIF MQVPSYGDELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA ; _struct_ref.pdbx_align_begin 190 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Y2F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 139 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P77173 _struct_ref_seq.db_align_beg 190 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 328 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 6 _struct_ref_seq.pdbx_auth_seq_align_end 144 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 WAI non-polymer . '4-{2-[4-(2-AMINOETHYL)PIPERAZIN-1-YL]PYRIDIN-4-YL}-N-(3-CHLORO-4-METHYLPHENYL)PYRIMIDIN-2-AMINE' ? 'C22 H26 Cl N7' 423.942 # _exptl.entry_id 1Y2F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.09 _exptl_crystal.density_percent_sol 35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'PEG 6000, MES, pH 6.0, VAPOR DIFFUSION, temperature 298.0K, pH 6.00' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.entry_id 1Y2F _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.00 _reflns.number_obs 13540 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.108 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.5 _reflns.B_iso_Wilson_estimate 5.80 _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.09 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.399 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.44 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1Y2F _refine.ls_number_reflns_obs 12306 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 87093.330 _refine.pdbx_data_cutoff_low_absF 0.0000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.41 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 90.6 _refine.ls_R_factor_obs 0.225 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.225 _refine.ls_R_factor_R_free 0.228 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 626 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 21.90 _refine.aniso_B[1][1] -0.28000 _refine.aniso_B[2][2] -0.41000 _refine.aniso_B[3][3] 0.70000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 43.20 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1F46' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1Y2F _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs 0.21 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.27 _refine_analyze.Luzzati_sigma_a_free 0.22 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1088 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 223 _refine_hist.number_atoms_total 1341 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 43.41 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.30 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.60 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 2.13 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 1730 _refine_ls_shell.R_factor_R_work 0.269 _refine_ls_shell.percent_reflns_obs 81.30 _refine_ls_shell.R_factor_R_free 0.27 _refine_ls_shell.R_factor_R_free_error 0.029 _refine_ls_shell.percent_reflns_R_free 4.60 _refine_ls_shell.number_reflns_R_free 84 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WAY_REV.PARAM WAY_REV.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1Y2F _struct.title 'Crystal Structure of ZipA with an inhibitor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Y2F _struct_keywords.pdbx_keywords 'CELL CYCLE' _struct_keywords.text 'CELL CYCLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 20 ? ALA A 30 ? GLY A 25 ALA A 35 1 ? 11 HELX_P HELX_P2 2 ASP A 36 ? ASN A 38 ? ASP A 41 ASN A 43 5 ? 3 HELX_P HELX_P3 3 ASP A 88 ? GLY A 108 ? ASP A 93 GLY A 113 1 ? 21 HELX_P HELX_P4 4 THR A 120 ? ALA A 137 ? THR A 125 ALA A 142 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 61 A . ? LYS 66 A PRO 62 A ? PRO 67 A 1 0.48 2 VAL 83 A . ? VAL 88 A PRO 84 A ? PRO 89 A 1 0.52 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 33 ? PHE A 34 ? ILE A 38 PHE A 39 A 2 TYR A 40 ? HIS A 43 ? TYR A 45 HIS A 48 A 3 ALA A 52 ? ASN A 58 ? ALA A 57 ASN A 63 A 4 GLY A 76 ? VAL A 83 ? GLY A 81 VAL A 88 A 5 ALA A 4 ? ALA A 11 ? ALA A 9 ALA A 16 A 6 VAL A 110 ? LEU A 112 ? VAL A 115 LEU A 117 B 1 LEU A 18 ? ASN A 19 ? LEU A 23 ASN A 24 B 2 THR A 73 ? THR A 74 ? THR A 78 THR A 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 33 ? N ILE A 38 O HIS A 41 ? O HIS A 46 A 2 3 N ARG A 42 ? N ARG A 47 O LEU A 53 ? O LEU A 58 A 3 4 N ALA A 57 ? N ALA A 62 O THR A 78 ? O THR A 83 A 4 5 O ILE A 79 ? O ILE A 84 N MET A 8 ? N MET A 13 A 5 6 N ASN A 9 ? N ASN A 14 O LEU A 112 ? O LEU A 117 B 1 2 N LEU A 18 ? N LEU A 23 O THR A 74 ? O THR A 79 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id WAI _struct_site.pdbx_auth_seq_id 300 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 13 _struct_site.details 'BINDING SITE FOR RESIDUE WAI A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 MET A 37 ? MET A 42 . ? 1_555 ? 2 AC1 13 ILE A 39 ? ILE A 44 . ? 1_555 ? 3 AC1 13 LEU A 44 ? LEU A 49 . ? 4_556 ? 4 AC1 13 SER A 45 ? SER A 50 . ? 4_556 ? 5 AC1 13 SER A 49 ? SER A 54 . ? 4_556 ? 6 AC1 13 GLY A 50 ? GLY A 55 . ? 4_556 ? 7 AC1 13 PRO A 51 ? PRO A 56 . ? 4_556 ? 8 AC1 13 ALA A 57 ? ALA A 62 . ? 1_555 ? 9 AC1 13 PHE A 80 ? PHE A 85 . ? 1_555 ? 10 AC1 13 HOH C . ? HOH A 310 . ? 1_555 ? 11 AC1 13 HOH C . ? HOH A 359 . ? 1_555 ? 12 AC1 13 HOH C . ? HOH A 366 . ? 1_555 ? 13 AC1 13 HOH C . ? HOH A 488 . ? 1_555 ? # _database_PDB_matrix.entry_id 1Y2F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Y2F _atom_sites.fract_transf_matrix[1][1] 0.022236 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019757 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011848 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 6 6 ARG ARG A . n A 1 2 LYS 2 7 7 LYS LYS A . n A 1 3 GLU 3 8 8 GLU GLU A . n A 1 4 ALA 4 9 9 ALA ALA A . n A 1 5 VAL 5 10 10 VAL VAL A . n A 1 6 ILE 6 11 11 ILE ILE A . n A 1 7 ILE 7 12 12 ILE ILE A . n A 1 8 MET 8 13 13 MET MET A . n A 1 9 ASN 9 14 14 ASN ASN A . n A 1 10 VAL 10 15 15 VAL VAL A . n A 1 11 ALA 11 16 16 ALA ALA A . n A 1 12 ALA 12 17 17 ALA ALA A . n A 1 13 HIS 13 18 18 HIS HIS A . n A 1 14 HIS 14 19 19 HIS HIS A . n A 1 15 GLY 15 20 20 GLY GLY A . n A 1 16 SER 16 21 21 SER SER A . n A 1 17 GLU 17 22 22 GLU GLU A . n A 1 18 LEU 18 23 23 LEU LEU A . n A 1 19 ASN 19 24 24 ASN ASN A . n A 1 20 GLY 20 25 25 GLY GLY A . n A 1 21 GLU 21 26 26 GLU GLU A . n A 1 22 LEU 22 27 27 LEU LEU A . n A 1 23 LEU 23 28 28 LEU LEU A . n A 1 24 LEU 24 29 29 LEU LEU A . n A 1 25 ASN 25 30 30 ASN ASN A . n A 1 26 SER 26 31 31 SER SER A . n A 1 27 ILE 27 32 32 ILE ILE A . n A 1 28 GLN 28 33 33 GLN GLN A . n A 1 29 GLN 29 34 34 GLN GLN A . n A 1 30 ALA 30 35 35 ALA ALA A . n A 1 31 GLY 31 36 36 GLY GLY A . n A 1 32 PHE 32 37 37 PHE PHE A . n A 1 33 ILE 33 38 38 ILE ILE A . n A 1 34 PHE 34 39 39 PHE PHE A . n A 1 35 GLY 35 40 40 GLY GLY A . n A 1 36 ASP 36 41 41 ASP ASP A . n A 1 37 MET 37 42 42 MET MET A . n A 1 38 ASN 38 43 43 ASN ASN A . n A 1 39 ILE 39 44 44 ILE ILE A . n A 1 40 TYR 40 45 45 TYR TYR A . n A 1 41 HIS 41 46 46 HIS HIS A . n A 1 42 ARG 42 47 47 ARG ARG A . n A 1 43 HIS 43 48 48 HIS HIS A . n A 1 44 LEU 44 49 49 LEU LEU A . n A 1 45 SER 45 50 50 SER SER A . n A 1 46 PRO 46 51 51 PRO PRO A . n A 1 47 ASP 47 52 52 ASP ASP A . n A 1 48 GLY 48 53 53 GLY GLY A . n A 1 49 SER 49 54 54 SER SER A . n A 1 50 GLY 50 55 55 GLY GLY A . n A 1 51 PRO 51 56 56 PRO PRO A . n A 1 52 ALA 52 57 57 ALA ALA A . n A 1 53 LEU 53 58 58 LEU LEU A . n A 1 54 PHE 54 59 59 PHE PHE A . n A 1 55 SER 55 60 60 SER SER A . n A 1 56 LEU 56 61 61 LEU LEU A . n A 1 57 ALA 57 62 62 ALA ALA A . n A 1 58 ASN 58 63 63 ASN ASN A . n A 1 59 MET 59 64 64 MET MET A . n A 1 60 VAL 60 65 65 VAL VAL A . n A 1 61 LYS 61 66 66 LYS LYS A . n A 1 62 PRO 62 67 67 PRO PRO A . n A 1 63 GLY 63 68 68 GLY GLY A . n A 1 64 THR 64 69 69 THR THR A . n A 1 65 PHE 65 70 70 PHE PHE A . n A 1 66 ASP 66 71 71 ASP ASP A . n A 1 67 PRO 67 72 72 PRO PRO A . n A 1 68 GLU 68 73 73 GLU GLU A . n A 1 69 MET 69 74 74 MET MET A . n A 1 70 LYS 70 75 75 LYS LYS A . n A 1 71 ASP 71 76 76 ASP ASP A . n A 1 72 PHE 72 77 77 PHE PHE A . n A 1 73 THR 73 78 78 THR THR A . n A 1 74 THR 74 79 79 THR THR A . n A 1 75 PRO 75 80 80 PRO PRO A . n A 1 76 GLY 76 81 81 GLY GLY A . n A 1 77 VAL 77 82 82 VAL VAL A . n A 1 78 THR 78 83 83 THR THR A . n A 1 79 ILE 79 84 84 ILE ILE A . n A 1 80 PHE 80 85 85 PHE PHE A . n A 1 81 MET 81 86 86 MET MET A . n A 1 82 GLN 82 87 87 GLN GLN A . n A 1 83 VAL 83 88 88 VAL VAL A . n A 1 84 PRO 84 89 89 PRO PRO A . n A 1 85 SER 85 90 90 SER SER A . n A 1 86 TYR 86 91 91 TYR TYR A . n A 1 87 GLY 87 92 92 GLY GLY A . n A 1 88 ASP 88 93 93 ASP ASP A . n A 1 89 GLU 89 94 94 GLU GLU A . n A 1 90 LEU 90 95 95 LEU LEU A . n A 1 91 GLN 91 96 96 GLN GLN A . n A 1 92 ASN 92 97 97 ASN ASN A . n A 1 93 PHE 93 98 98 PHE PHE A . n A 1 94 LYS 94 99 99 LYS LYS A . n A 1 95 LEU 95 100 100 LEU LEU A . n A 1 96 MET 96 101 101 MET MET A . n A 1 97 LEU 97 102 102 LEU LEU A . n A 1 98 GLN 98 103 103 GLN GLN A . n A 1 99 SER 99 104 104 SER SER A . n A 1 100 ALA 100 105 105 ALA ALA A . n A 1 101 GLN 101 106 106 GLN GLN A . n A 1 102 HIS 102 107 107 HIS HIS A . n A 1 103 ILE 103 108 108 ILE ILE A . n A 1 104 ALA 104 109 109 ALA ALA A . n A 1 105 ASP 105 110 110 ASP ASP A . n A 1 106 GLU 106 111 111 GLU GLU A . n A 1 107 VAL 107 112 112 VAL VAL A . n A 1 108 GLY 108 113 113 GLY GLY A . n A 1 109 GLY 109 114 114 GLY GLY A . n A 1 110 VAL 110 115 115 VAL VAL A . n A 1 111 VAL 111 116 116 VAL VAL A . n A 1 112 LEU 112 117 117 LEU LEU A . n A 1 113 ASP 113 118 118 ASP ASP A . n A 1 114 ASP 114 119 119 ASP ASP A . n A 1 115 GLN 115 120 120 GLN GLN A . n A 1 116 ARG 116 121 121 ARG ARG A . n A 1 117 ARG 117 122 122 ARG ARG A . n A 1 118 MET 118 123 123 MET MET A . n A 1 119 MET 119 124 124 MET MET A . n A 1 120 THR 120 125 125 THR THR A . n A 1 121 PRO 121 126 126 PRO PRO A . n A 1 122 GLN 122 127 127 GLN GLN A . n A 1 123 LYS 123 128 128 LYS LYS A . n A 1 124 LEU 124 129 129 LEU LEU A . n A 1 125 ARG 125 130 130 ARG ARG A . n A 1 126 GLU 126 131 131 GLU GLU A . n A 1 127 TYR 127 132 132 TYR TYR A . n A 1 128 GLN 128 133 133 GLN GLN A . n A 1 129 ASP 129 134 134 ASP ASP A . n A 1 130 ILE 130 135 135 ILE ILE A . n A 1 131 ILE 131 136 136 ILE ILE A . n A 1 132 ARG 132 137 137 ARG ARG A . n A 1 133 GLU 133 138 138 GLU GLU A . n A 1 134 VAL 134 139 139 VAL VAL A . n A 1 135 LYS 135 140 140 LYS LYS A . n A 1 136 ASP 136 141 141 ASP ASP A . n A 1 137 ALA 137 142 142 ALA ALA A . n A 1 138 ASN 138 143 143 ASN ASN A . n A 1 139 ALA 139 144 144 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WAI 1 300 300 WAI WAI A . C 3 HOH 1 301 1 HOH HOH A . C 3 HOH 2 302 2 HOH HOH A . C 3 HOH 3 303 3 HOH HOH A . C 3 HOH 4 304 4 HOH HOH A . C 3 HOH 5 305 5 HOH HOH A . C 3 HOH 6 306 6 HOH HOH A . C 3 HOH 7 307 7 HOH HOH A . C 3 HOH 8 308 8 HOH HOH A . C 3 HOH 9 309 9 HOH HOH A . C 3 HOH 10 310 10 HOH HOH A . C 3 HOH 11 311 11 HOH HOH A . C 3 HOH 12 312 12 HOH HOH A . C 3 HOH 13 313 13 HOH HOH A . C 3 HOH 14 314 14 HOH HOH A . C 3 HOH 15 315 15 HOH HOH A . C 3 HOH 16 316 16 HOH HOH A . C 3 HOH 17 317 17 HOH HOH A . C 3 HOH 18 318 18 HOH HOH A . C 3 HOH 19 319 19 HOH HOH A . C 3 HOH 20 320 20 HOH HOH A . C 3 HOH 21 321 21 HOH HOH A . C 3 HOH 22 322 22 HOH HOH A . C 3 HOH 23 323 23 HOH HOH A . C 3 HOH 24 324 24 HOH HOH A . C 3 HOH 25 325 25 HOH HOH A . C 3 HOH 26 326 26 HOH HOH A . C 3 HOH 27 327 27 HOH HOH A . C 3 HOH 28 328 28 HOH HOH A . C 3 HOH 29 329 29 HOH HOH A . C 3 HOH 30 330 30 HOH HOH A . C 3 HOH 31 331 31 HOH HOH A . C 3 HOH 32 332 32 HOH HOH A . C 3 HOH 33 333 33 HOH HOH A . C 3 HOH 34 334 34 HOH HOH A . C 3 HOH 35 335 35 HOH HOH A . C 3 HOH 36 336 36 HOH HOH A . C 3 HOH 37 337 37 HOH HOH A . C 3 HOH 38 338 38 HOH HOH A . C 3 HOH 39 339 39 HOH HOH A . C 3 HOH 40 340 40 HOH HOH A . C 3 HOH 41 341 41 HOH HOH A . C 3 HOH 42 342 42 HOH HOH A . C 3 HOH 43 343 43 HOH HOH A . C 3 HOH 44 344 44 HOH HOH A . C 3 HOH 45 345 45 HOH HOH A . C 3 HOH 46 346 46 HOH HOH A . C 3 HOH 47 347 47 HOH HOH A . C 3 HOH 48 348 48 HOH HOH A . C 3 HOH 49 349 49 HOH HOH A . C 3 HOH 50 350 50 HOH HOH A . C 3 HOH 51 351 51 HOH HOH A . C 3 HOH 52 352 52 HOH HOH A . C 3 HOH 53 353 53 HOH HOH A . C 3 HOH 54 354 54 HOH HOH A . C 3 HOH 55 355 55 HOH HOH A . C 3 HOH 56 356 56 HOH HOH A . C 3 HOH 57 357 57 HOH HOH A . C 3 HOH 58 358 58 HOH HOH A . C 3 HOH 59 359 59 HOH HOH A . C 3 HOH 60 360 60 HOH HOH A . C 3 HOH 61 361 61 HOH HOH A . C 3 HOH 62 362 63 HOH HOH A . C 3 HOH 63 363 64 HOH HOH A . C 3 HOH 64 364 65 HOH HOH A . C 3 HOH 65 365 66 HOH HOH A . C 3 HOH 66 366 67 HOH HOH A . C 3 HOH 67 367 68 HOH HOH A . C 3 HOH 68 368 69 HOH HOH A . C 3 HOH 69 369 70 HOH HOH A . C 3 HOH 70 370 71 HOH HOH A . C 3 HOH 71 371 72 HOH HOH A . C 3 HOH 72 372 73 HOH HOH A . C 3 HOH 73 373 74 HOH HOH A . C 3 HOH 74 374 75 HOH HOH A . C 3 HOH 75 375 76 HOH HOH A . C 3 HOH 76 376 77 HOH HOH A . C 3 HOH 77 377 78 HOH HOH A . C 3 HOH 78 378 79 HOH HOH A . C 3 HOH 79 379 80 HOH HOH A . C 3 HOH 80 380 81 HOH HOH A . C 3 HOH 81 381 82 HOH HOH A . C 3 HOH 82 382 83 HOH HOH A . C 3 HOH 83 383 84 HOH HOH A . C 3 HOH 84 384 85 HOH HOH A . C 3 HOH 85 385 86 HOH HOH A . C 3 HOH 86 386 87 HOH HOH A . C 3 HOH 87 387 88 HOH HOH A . C 3 HOH 88 388 89 HOH HOH A . C 3 HOH 89 389 90 HOH HOH A . C 3 HOH 90 390 91 HOH HOH A . C 3 HOH 91 391 92 HOH HOH A . C 3 HOH 92 392 93 HOH HOH A . C 3 HOH 93 393 94 HOH HOH A . C 3 HOH 94 394 95 HOH HOH A . C 3 HOH 95 395 96 HOH HOH A . C 3 HOH 96 396 97 HOH HOH A . C 3 HOH 97 397 98 HOH HOH A . C 3 HOH 98 398 99 HOH HOH A . C 3 HOH 99 399 100 HOH HOH A . C 3 HOH 100 400 101 HOH HOH A . C 3 HOH 101 401 102 HOH HOH A . C 3 HOH 102 402 103 HOH HOH A . C 3 HOH 103 403 104 HOH HOH A . C 3 HOH 104 404 105 HOH HOH A . C 3 HOH 105 405 106 HOH HOH A . C 3 HOH 106 406 107 HOH HOH A . C 3 HOH 107 407 108 HOH HOH A . C 3 HOH 108 408 109 HOH HOH A . C 3 HOH 109 409 110 HOH HOH A . C 3 HOH 110 410 111 HOH HOH A . C 3 HOH 111 411 112 HOH HOH A . C 3 HOH 112 412 113 HOH HOH A . C 3 HOH 113 413 114 HOH HOH A . C 3 HOH 114 414 115 HOH HOH A . C 3 HOH 115 415 116 HOH HOH A . C 3 HOH 116 416 117 HOH HOH A . C 3 HOH 117 417 118 HOH HOH A . C 3 HOH 118 418 119 HOH HOH A . C 3 HOH 119 419 120 HOH HOH A . C 3 HOH 120 420 121 HOH HOH A . C 3 HOH 121 421 122 HOH HOH A . C 3 HOH 122 422 123 HOH HOH A . C 3 HOH 123 423 124 HOH HOH A . C 3 HOH 124 424 126 HOH HOH A . C 3 HOH 125 425 127 HOH HOH A . C 3 HOH 126 426 128 HOH HOH A . C 3 HOH 127 427 129 HOH HOH A . C 3 HOH 128 428 130 HOH HOH A . C 3 HOH 129 429 131 HOH HOH A . C 3 HOH 130 430 132 HOH HOH A . C 3 HOH 131 431 133 HOH HOH A . C 3 HOH 132 432 134 HOH HOH A . C 3 HOH 133 433 135 HOH HOH A . C 3 HOH 134 434 136 HOH HOH A . C 3 HOH 135 435 137 HOH HOH A . C 3 HOH 136 436 138 HOH HOH A . C 3 HOH 137 437 139 HOH HOH A . C 3 HOH 138 438 140 HOH HOH A . C 3 HOH 139 439 141 HOH HOH A . C 3 HOH 140 440 142 HOH HOH A . C 3 HOH 141 441 143 HOH HOH A . C 3 HOH 142 442 144 HOH HOH A . C 3 HOH 143 443 145 HOH HOH A . C 3 HOH 144 444 146 HOH HOH A . C 3 HOH 145 445 147 HOH HOH A . C 3 HOH 146 446 148 HOH HOH A . C 3 HOH 147 447 149 HOH HOH A . C 3 HOH 148 448 151 HOH HOH A . C 3 HOH 149 449 152 HOH HOH A . C 3 HOH 150 450 153 HOH HOH A . C 3 HOH 151 451 154 HOH HOH A . C 3 HOH 152 452 155 HOH HOH A . C 3 HOH 153 453 156 HOH HOH A . C 3 HOH 154 454 158 HOH HOH A . C 3 HOH 155 455 159 HOH HOH A . C 3 HOH 156 456 160 HOH HOH A . C 3 HOH 157 457 161 HOH HOH A . C 3 HOH 158 458 162 HOH HOH A . C 3 HOH 159 459 163 HOH HOH A . C 3 HOH 160 460 164 HOH HOH A . C 3 HOH 161 461 165 HOH HOH A . C 3 HOH 162 462 166 HOH HOH A . C 3 HOH 163 463 167 HOH HOH A . C 3 HOH 164 464 168 HOH HOH A . C 3 HOH 165 465 169 HOH HOH A . C 3 HOH 166 466 170 HOH HOH A . C 3 HOH 167 467 171 HOH HOH A . C 3 HOH 168 468 172 HOH HOH A . C 3 HOH 169 469 173 HOH HOH A . C 3 HOH 170 470 174 HOH HOH A . C 3 HOH 171 471 175 HOH HOH A . C 3 HOH 172 472 176 HOH HOH A . C 3 HOH 173 473 177 HOH HOH A . C 3 HOH 174 474 178 HOH HOH A . C 3 HOH 175 475 179 HOH HOH A . C 3 HOH 176 476 180 HOH HOH A . C 3 HOH 177 477 181 HOH HOH A . C 3 HOH 178 478 182 HOH HOH A . C 3 HOH 179 479 183 HOH HOH A . C 3 HOH 180 480 184 HOH HOH A . C 3 HOH 181 481 185 HOH HOH A . C 3 HOH 182 482 186 HOH HOH A . C 3 HOH 183 483 187 HOH HOH A . C 3 HOH 184 484 188 HOH HOH A . C 3 HOH 185 485 189 HOH HOH A . C 3 HOH 186 486 190 HOH HOH A . C 3 HOH 187 487 191 HOH HOH A . C 3 HOH 188 488 192 HOH HOH A . C 3 HOH 189 489 193 HOH HOH A . C 3 HOH 190 490 194 HOH HOH A . C 3 HOH 191 491 195 HOH HOH A . C 3 HOH 192 492 196 HOH HOH A . C 3 HOH 193 493 197 HOH HOH A . C 3 HOH 194 494 198 HOH HOH A . C 3 HOH 195 495 199 HOH HOH A . C 3 HOH 196 496 201 HOH HOH A . C 3 HOH 197 497 202 HOH HOH A . C 3 HOH 198 498 203 HOH HOH A . C 3 HOH 199 499 204 HOH HOH A . C 3 HOH 200 500 205 HOH HOH A . C 3 HOH 201 501 206 HOH HOH A . C 3 HOH 202 502 207 HOH HOH A . C 3 HOH 203 503 208 HOH HOH A . C 3 HOH 204 504 209 HOH HOH A . C 3 HOH 205 505 210 HOH HOH A . C 3 HOH 206 506 211 HOH HOH A . C 3 HOH 207 507 212 HOH HOH A . C 3 HOH 208 508 213 HOH HOH A . C 3 HOH 209 509 214 HOH HOH A . C 3 HOH 210 510 215 HOH HOH A . C 3 HOH 211 511 216 HOH HOH A . C 3 HOH 212 512 217 HOH HOH A . C 3 HOH 213 513 218 HOH HOH A . C 3 HOH 214 514 219 HOH HOH A . C 3 HOH 215 515 220 HOH HOH A . C 3 HOH 216 516 221 HOH HOH A . C 3 HOH 217 517 222 HOH HOH A . C 3 HOH 218 518 223 HOH HOH A . C 3 HOH 219 519 224 HOH HOH A . C 3 HOH 220 520 225 HOH HOH A . C 3 HOH 221 521 226 HOH HOH A . C 3 HOH 222 522 227 HOH HOH A . C 3 HOH 223 523 228 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 AMoRE phasing . ? 2 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH2 A ARG 137 ? ? O A HOH 504 ? ? 2.02 2 1 O A HOH 430 ? ? O A HOH 436 ? ? 2.05 3 1 O A HOH 342 ? ? O A HOH 514 ? ? 2.14 4 1 OE1 A GLN 96 ? ? O A HOH 501 ? ? 2.15 5 1 OD2 A ASP 134 ? ? O A HOH 514 ? ? 2.16 6 1 O A HOH 388 ? ? O A HOH 461 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 47 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 417 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_456 _pdbx_validate_symm_contact.dist 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CA A ASP 52 ? ? C A ASP 52 ? ? 1.708 1.525 0.183 0.026 N 2 1 N A GLY 53 ? ? CA A GLY 53 ? ? 1.358 1.456 -0.098 0.015 N 3 1 CA A GLY 53 ? ? C A GLY 53 ? ? 1.718 1.514 0.204 0.016 N 4 1 CA A SER 54 ? ? C A SER 54 ? ? 1.689 1.525 0.164 0.026 N 5 1 CG A GLU 94 ? ? CD A GLU 94 ? ? 1.422 1.515 -0.093 0.015 N 6 1 CD A ARG 137 ? ? NE A ARG 137 ? ? 1.343 1.460 -0.117 0.017 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LEU 27 ? ? CG A LEU 27 ? ? CD2 A LEU 27 ? ? 99.92 111.00 -11.08 1.70 N 2 1 NE A ARG 47 ? ? CZ A ARG 47 ? ? NH1 A ARG 47 ? ? 125.62 120.30 5.32 0.50 N 3 1 NE A ARG 47 ? ? CZ A ARG 47 ? ? NH2 A ARG 47 ? ? 108.93 120.30 -11.37 0.50 N 4 1 N A PRO 51 ? ? CA A PRO 51 ? ? CB A PRO 51 ? ? 111.21 103.30 7.91 1.20 N 5 1 N A ASP 52 ? ? CA A ASP 52 ? ? C A ASP 52 ? ? 93.73 111.00 -17.27 2.70 N 6 1 OE1 A GLU 94 ? ? CD A GLU 94 ? ? OE2 A GLU 94 ? ? 110.65 123.30 -12.65 1.20 N 7 1 CG A GLU 94 ? ? CD A GLU 94 ? ? OE2 A GLU 94 ? ? 137.91 118.30 19.61 2.00 N 8 1 NH1 A ARG 122 ? ? CZ A ARG 122 ? ? NH2 A ARG 122 ? ? 104.79 119.40 -14.61 1.10 N 9 1 NE A ARG 122 ? ? CZ A ARG 122 ? ? NH1 A ARG 122 ? ? 135.48 120.30 15.18 0.50 N 10 1 NE A ARG 122 ? ? CZ A ARG 122 ? ? NH2 A ARG 122 ? ? 96.10 120.30 -24.20 0.50 N 11 1 NE A ARG 137 ? ? CZ A ARG 137 ? ? NH1 A ARG 137 ? ? 124.62 120.30 4.32 0.50 N 12 1 NE A ARG 137 ? ? CZ A ARG 137 ? ? NH2 A ARG 137 ? ? 111.69 120.30 -8.61 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 52 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -106.82 _pdbx_validate_torsion.psi -165.70 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 PRO A 51 ? ? ASP A 52 ? ? 128.47 2 1 ASP A 52 ? ? GLY A 53 ? ? 126.76 3 1 GLY A 53 ? ? SER A 54 ? ? 139.21 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 122 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.328 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 THR N N N N 290 THR CA C N S 291 THR C C N N 292 THR O O N N 293 THR CB C N R 294 THR OG1 O N N 295 THR CG2 C N N 296 THR OXT O N N 297 THR H H N N 298 THR H2 H N N 299 THR HA H N N 300 THR HB H N N 301 THR HG1 H N N 302 THR HG21 H N N 303 THR HG22 H N N 304 THR HG23 H N N 305 THR HXT H N N 306 TYR N N N N 307 TYR CA C N S 308 TYR C C N N 309 TYR O O N N 310 TYR CB C N N 311 TYR CG C Y N 312 TYR CD1 C Y N 313 TYR CD2 C Y N 314 TYR CE1 C Y N 315 TYR CE2 C Y N 316 TYR CZ C Y N 317 TYR OH O N N 318 TYR OXT O N N 319 TYR H H N N 320 TYR H2 H N N 321 TYR HA H N N 322 TYR HB2 H N N 323 TYR HB3 H N N 324 TYR HD1 H N N 325 TYR HD2 H N N 326 TYR HE1 H N N 327 TYR HE2 H N N 328 TYR HH H N N 329 TYR HXT H N N 330 VAL N N N N 331 VAL CA C N S 332 VAL C C N N 333 VAL O O N N 334 VAL CB C N N 335 VAL CG1 C N N 336 VAL CG2 C N N 337 VAL OXT O N N 338 VAL H H N N 339 VAL H2 H N N 340 VAL HA H N N 341 VAL HB H N N 342 VAL HG11 H N N 343 VAL HG12 H N N 344 VAL HG13 H N N 345 VAL HG21 H N N 346 VAL HG22 H N N 347 VAL HG23 H N N 348 VAL HXT H N N 349 WAI C1 C Y N 350 WAI C2 C Y N 351 WAI C3 C Y N 352 WAI N4 N Y N 353 WAI C5 C Y N 354 WAI C6 C Y N 355 WAI C7 C Y N 356 WAI C8 C Y N 357 WAI C9 C Y N 358 WAI N10 N Y N 359 WAI C11 C Y N 360 WAI N12 N Y N 361 WAI N13 N N N 362 WAI C14 C Y N 363 WAI C15 C Y N 364 WAI C16 C Y N 365 WAI C17 C Y N 366 WAI C18 C Y N 367 WAI C19 C Y N 368 WAI C20 C N N 369 WAI CL24 CL N N 370 WAI N34 N N N 371 WAI C35 C N N 372 WAI C36 C N N 373 WAI N37 N N N 374 WAI C38 C N N 375 WAI C39 C N N 376 WAI C48 C N N 377 WAI C49 C N N 378 WAI N52 N N N 379 WAI H2 H N N 380 WAI H5 H N N 381 WAI H6 H N N 382 WAI H8 H N N 383 WAI H9 H N N 384 WAI H13 H N N 385 WAI H15 H N N 386 WAI H18 H N N 387 WAI H19 H N N 388 WAI H201 H N N 389 WAI H202 H N N 390 WAI H203 H N N 391 WAI H351 H N N 392 WAI H352 H N N 393 WAI H361 H N N 394 WAI H362 H N N 395 WAI H381 H N N 396 WAI H382 H N N 397 WAI H391 H N N 398 WAI H392 H N N 399 WAI H481 H N N 400 WAI H482 H N N 401 WAI H491 H N N 402 WAI H492 H N N 403 WAI H521 H N N 404 WAI H522 H N N 405 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TYR N CA sing N N 293 TYR N H sing N N 294 TYR N H2 sing N N 295 TYR CA C sing N N 296 TYR CA CB sing N N 297 TYR CA HA sing N N 298 TYR C O doub N N 299 TYR C OXT sing N N 300 TYR CB CG sing N N 301 TYR CB HB2 sing N N 302 TYR CB HB3 sing N N 303 TYR CG CD1 doub Y N 304 TYR CG CD2 sing Y N 305 TYR CD1 CE1 sing Y N 306 TYR CD1 HD1 sing N N 307 TYR CD2 CE2 doub Y N 308 TYR CD2 HD2 sing N N 309 TYR CE1 CZ doub Y N 310 TYR CE1 HE1 sing N N 311 TYR CE2 CZ sing Y N 312 TYR CE2 HE2 sing N N 313 TYR CZ OH sing N N 314 TYR OH HH sing N N 315 TYR OXT HXT sing N N 316 VAL N CA sing N N 317 VAL N H sing N N 318 VAL N H2 sing N N 319 VAL CA C sing N N 320 VAL CA CB sing N N 321 VAL CA HA sing N N 322 VAL C O doub N N 323 VAL C OXT sing N N 324 VAL CB CG1 sing N N 325 VAL CB CG2 sing N N 326 VAL CB HB sing N N 327 VAL CG1 HG11 sing N N 328 VAL CG1 HG12 sing N N 329 VAL CG1 HG13 sing N N 330 VAL CG2 HG21 sing N N 331 VAL CG2 HG22 sing N N 332 VAL CG2 HG23 sing N N 333 VAL OXT HXT sing N N 334 WAI C1 C2 doub Y N 335 WAI C1 C6 sing Y N 336 WAI C1 C7 sing Y N 337 WAI C2 C3 sing Y N 338 WAI C2 H2 sing N N 339 WAI C3 N4 doub Y N 340 WAI C3 N34 sing N N 341 WAI N4 C5 sing Y N 342 WAI C5 C6 doub Y N 343 WAI C5 H5 sing N N 344 WAI C6 H6 sing N N 345 WAI C7 C8 doub Y N 346 WAI C7 N12 sing Y N 347 WAI C8 C9 sing Y N 348 WAI C8 H8 sing N N 349 WAI C9 N10 doub Y N 350 WAI C9 H9 sing N N 351 WAI N10 C11 sing Y N 352 WAI C11 N12 doub Y N 353 WAI C11 N13 sing N N 354 WAI N13 C14 sing N N 355 WAI N13 H13 sing N N 356 WAI C14 C15 doub Y N 357 WAI C14 C19 sing Y N 358 WAI C15 C16 sing Y N 359 WAI C15 H15 sing N N 360 WAI C16 C17 doub Y N 361 WAI C16 CL24 sing N N 362 WAI C17 C18 sing Y N 363 WAI C17 C20 sing N N 364 WAI C18 C19 doub Y N 365 WAI C18 H18 sing N N 366 WAI C19 H19 sing N N 367 WAI C20 H201 sing N N 368 WAI C20 H202 sing N N 369 WAI C20 H203 sing N N 370 WAI N34 C35 sing N N 371 WAI N34 C39 sing N N 372 WAI C35 C36 sing N N 373 WAI C35 H351 sing N N 374 WAI C35 H352 sing N N 375 WAI C36 N37 sing N N 376 WAI C36 H361 sing N N 377 WAI C36 H362 sing N N 378 WAI N37 C38 sing N N 379 WAI N37 C48 sing N N 380 WAI C38 C39 sing N N 381 WAI C38 H381 sing N N 382 WAI C38 H382 sing N N 383 WAI C39 H391 sing N N 384 WAI C39 H392 sing N N 385 WAI C48 C49 sing N N 386 WAI C48 H481 sing N N 387 WAI C48 H482 sing N N 388 WAI C49 N52 sing N N 389 WAI C49 H491 sing N N 390 WAI C49 H492 sing N N 391 WAI N52 H521 sing N N 392 WAI N52 H522 sing N N 393 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-{2-[4-(2-AMINOETHYL)PIPERAZIN-1-YL]PYRIDIN-4-YL}-N-(3-CHLORO-4-METHYLPHENYL)PYRIMIDIN-2-AMINE' WAI 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1F46 _pdbx_initial_refinement_model.details 'PDB ENTRY 1F46' #