data_1Y39 # _entry.id 1Y39 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Y39 pdb_00001y39 10.2210/pdb1y39/pdb NDB PR0144 ? ? RCSB RCSB031060 ? ? WWPDB D_1000031060 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1hc8 _pdbx_database_related.details 'Crystal Structure Of A Conserved Ribosomal Protein-RNA Complex' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Y39 _pdbx_database_status.recvd_initial_deposition_date 2004-11-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dunstan, M.S.' 1 'GuhaThakurta, D.' 2 'Draper, D.E.' 3 'Conn, G.L.' 4 # _citation.id primary _citation.title 'Coevolution of Protein and RNA Structures within a Highly Conserved Ribosomal Domain' _citation.journal_abbrev Chem.Biol. _citation.journal_volume 12 _citation.page_first 201 _citation.page_last 206 _citation.year 2005 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1074-5521 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15734647 _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2004.11.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dunstan, M.S.' 1 ? primary 'Guhathakurta, D.' 2 ? primary 'Draper, D.E.' 3 ? primary 'Conn, G.L.' 4 ? # _cell.entry_id 1Y39 _cell.length_a 150.240 _cell.length_b 150.240 _cell.length_c 62.984 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y39 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '58 Nucleotide Ribosomal 23S RNA Domain' 18863.094 2 ? 'G1062U, C1076A' ? ? 2 polymer man '50S ribosomal protein L11' 8195.558 2 ? S69N 'C-Terminal Domain Of Ribosomal Protein L11' ? 3 non-polymer syn 'COBALT (III) ION' 58.933 2 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 18 ? ? ? ? 6 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 7 water nat water 18.015 15 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Ribosomal protein L11' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes '(GTP)CCAGGAUGUAUGCUUAGAAGCAGCAAUCAUUUAAAGAGUGCGUAAUAGCUCACUGGU' GCCAGGAUGUAUGCUUAGAAGCAGCAAUCAUUUAAAGAGUGCGUAAUAGCUCACUGGU C,D ? 2 'polypeptide(L)' no no FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARNMGIVVED FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARNMGIVVED A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 C n 1 3 C n 1 4 A n 1 5 G n 1 6 G n 1 7 A n 1 8 U n 1 9 G n 1 10 U n 1 11 A n 1 12 U n 1 13 G n 1 14 C n 1 15 U n 1 16 U n 1 17 A n 1 18 G n 1 19 A n 1 20 A n 1 21 G n 1 22 C n 1 23 A n 1 24 G n 1 25 C n 1 26 A n 1 27 A n 1 28 U n 1 29 C n 1 30 A n 1 31 U n 1 32 U n 1 33 U n 1 34 A n 1 35 A n 1 36 A n 1 37 G n 1 38 A n 1 39 G n 1 40 U n 1 41 G n 1 42 C n 1 43 G n 1 44 U n 1 45 A n 1 46 A n 1 47 U n 1 48 A n 1 49 G n 1 50 C n 1 51 U n 1 52 C n 1 53 A n 1 54 C n 1 55 U n 1 56 G n 1 57 G n 1 58 U n 2 1 PHE n 2 2 THR n 2 3 PHE n 2 4 ILE n 2 5 THR n 2 6 LYS n 2 7 THR n 2 8 PRO n 2 9 PRO n 2 10 ALA n 2 11 ALA n 2 12 VAL n 2 13 LEU n 2 14 LEU n 2 15 LYS n 2 16 LYS n 2 17 ALA n 2 18 ALA n 2 19 GLY n 2 20 ILE n 2 21 GLU n 2 22 SER n 2 23 GLY n 2 24 SER n 2 25 GLY n 2 26 GLU n 2 27 PRO n 2 28 ASN n 2 29 ARG n 2 30 ASN n 2 31 LYS n 2 32 VAL n 2 33 ALA n 2 34 THR n 2 35 ILE n 2 36 LYS n 2 37 ARG n 2 38 ASP n 2 39 LYS n 2 40 VAL n 2 41 ARG n 2 42 GLU n 2 43 ILE n 2 44 ALA n 2 45 GLU n 2 46 LEU n 2 47 LYS n 2 48 MET n 2 49 PRO n 2 50 ASP n 2 51 LEU n 2 52 ASN n 2 53 ALA n 2 54 ALA n 2 55 SER n 2 56 ILE n 2 57 GLU n 2 58 ALA n 2 59 ALA n 2 60 MET n 2 61 ARG n 2 62 MET n 2 63 ILE n 2 64 GLU n 2 65 GLY n 2 66 THR n 2 67 ALA n 2 68 ARG n 2 69 ASN n 2 70 MET n 2 71 GLY n 2 72 ILE n 2 73 VAL n 2 74 VAL n 2 75 GLU n 2 76 ASP n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Geobacillus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacillus stearothermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1422 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Bl21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector Puc18 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'L11-C76(S69N)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Nts 1051-1108 From E. Coli 23S Rrna' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RL11_BACST 2 FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVED 58 P56210 ? 2 PDB 1Y39 1 ? ? 1Y39 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1Y39 A 1 ? 76 ? P56210 58 ? 133 ? 1 76 2 1 1Y39 B 1 ? 76 ? P56210 58 ? 133 ? 201 276 3 2 1Y39 C 1 ? 58 ? 1Y39 101 ? 158 ? 101 158 4 2 1Y39 D 1 ? 58 ? 1Y39 301 ? 358 ? 301 358 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Y39 ASN A 69 ? UNP P56210 SER 126 'engineered mutation' 69 1 2 1Y39 ASN B 69 ? UNP P56210 SER 126 'engineered mutation' 269 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3CO non-polymer . 'COBALT (III) ION' ? 'Co 3' 58.933 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Y39 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.3 _exptl_crystal.density_percent_sol 62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'PEG600, Magnesium acetate, glycerol, sodium cacodylate, potasium chlroride, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 310K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 PEG600 ? ? ? 1 2 1 'Magnesium acetate' ? ? ? 1 3 1 glycerol ? ? ? 1 4 1 'sodium cacodylate' ? ? ? 1 5 1 'potasium chlroride' ? ? ? 1 6 2 PEG600 ? ? ? 1 7 2 'Magnesium acetate' ? ? ? 1 8 2 glycerol ? ? ? 1 9 2 'sodium cacodylate' ? ? ? 1 10 2 'potasium chlroride' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 200 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-05-08 _diffrn_detector.details 'Rh coated Si mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rh coated Si mirror' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.87 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX9.6' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX9.6 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.87 # _reflns.entry_id 1Y39 _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 18 _reflns.d_resolution_high 2.8 _reflns.number_obs 17764 _reflns.number_all 18216 _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18 _reflns.B_iso_Wilson_estimate 31.8 _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.9 _reflns_shell.percent_possible_all 98.1 _reflns_shell.Rmerge_I_obs 0.445 _reflns_shell.pdbx_Rsym_value 0.445 _reflns_shell.meanI_over_sigI_obs 5.1 _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1777 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs 1744 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1Y39 _refine.ls_number_reflns_obs 17764 _refine.ls_number_reflns_all 18216 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1487462.56 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.00 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 97.4 _refine.ls_R_factor_obs 0.22 _refine.ls_R_factor_all 0.22 _refine.ls_R_factor_R_work 0.22 _refine.ls_R_factor_R_free 0.253 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.8 _refine.ls_number_reflns_R_free 1033 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 71.1 _refine.aniso_B[1][1] -1.75 _refine.aniso_B[2][2] -1.75 _refine.aniso_B[3][3] 3.51 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.292791 _refine.solvent_model_param_bsol 43.7744 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1HC8' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1Y39 _refine_analyze.Luzzati_coordinate_error_obs 0.39 _refine_analyze.Luzzati_sigma_a_obs 0.54 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.46 _refine_analyze.Luzzati_sigma_a_free 0.56 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1083 _refine_hist.pdbx_number_atoms_nucleic_acid 2500 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 15 _refine_hist.number_atoms_total 3632 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 18.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 19.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.46 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 0.87 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.60 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.07 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 1.76 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 2762 _refine_ls_shell.R_factor_R_work 0.348 _refine_ls_shell.percent_reflns_obs 98.5 _refine_ls_shell.R_factor_R_free 0.381 _refine_ls_shell.R_factor_R_free_error 0.030 _refine_ls_shell.percent_reflns_R_free 5.6 _refine_ls_shell.number_reflns_R_free 163 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_GTP.PARAM DNA-RNA_GTP.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 4 WATER.PARAM WATER.TOP 'X-RAY DIFFRACTION' 5 GOL.PARAM GOL.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1Y39 _struct.title 'Co-evolution of protein and RNA structures within a highly conserved ribosomal domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Y39 _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN/RNA' _struct_keywords.text 'X-Ray Crystal structure, Choroplast-Like L11 complex, rRNA, 23S RNA, STRUCTURAL PROTEIN-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 5 ? O N N 5 ? P N N 5 ? Q N N 6 ? R N N 3 ? S N N 4 ? T N N 5 ? U N N 5 ? V N N 5 ? W N N 5 ? X N N 5 ? Y N N 5 ? Z N N 5 ? AA N N 5 ? BA N N 6 ? CA N N 7 ? DA N N 7 ? EA N N 7 ? FA N N 7 ? # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO C 9 ? GLY C 19 ? PRO A 9 GLY A 19 1 ? 11 HELX_P HELX_P2 2 LYS C 36 ? MET C 48 ? LYS A 36 MET A 48 1 ? 13 HELX_P HELX_P3 3 SER C 55 ? ASN C 69 ? SER A 55 ASN A 69 1 ? 15 HELX_P HELX_P4 4 PRO D 9 ? ALA D 18 ? PRO B 209 ALA B 218 1 ? 10 HELX_P HELX_P5 5 LYS D 39 ? MET D 48 ? LYS B 239 MET B 248 1 ? 10 HELX_P HELX_P6 6 PRO D 49 ? LEU D 51 ? PRO B 249 LEU B 251 5 ? 3 HELX_P HELX_P7 7 SER D 55 ? ASN D 69 ? SER B 255 ASN B 269 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A C 2 P ? ? C GTP 101 C C 102 1_555 ? ? ? ? ? ? ? 1.580 ? ? covale2 covale both ? B GTP 1 "O3'" ? ? ? 1_555 B C 2 P ? ? D GTP 301 D C 302 1_555 ? ? ? ? ? ? ? 1.596 ? ? metalc1 metalc ? ? A G 13 OP2 ? ? ? 1_555 I MG . MG ? ? C G 113 C MG 408 1_555 ? ? ? ? ? ? ? 2.274 ? ? metalc2 metalc ? ? A U 16 OP1 ? ? ? 1_555 H MG . MG ? ? C U 116 C MG 407 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc3 metalc ? ? A A 19 "O3'" ? ? ? 1_555 F K . K ? ? C A 119 C K 404 1_555 ? ? ? ? ? ? ? 3.033 ? ? metalc4 metalc ? ? A A 20 OP2 ? ? ? 1_555 F K . K ? ? C A 120 C K 404 1_555 ? ? ? ? ? ? ? 2.807 ? ? metalc5 metalc ? ? A A 20 OP2 ? ? ? 1_555 K MG . MG ? ? C A 120 C MG 415 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc6 metalc ? ? A C 22 OP1 ? ? ? 1_555 F K . K ? ? C C 122 C K 404 1_555 ? ? ? ? ? ? ? 2.949 ? ? metalc7 metalc ? ? A C 22 "O5'" ? ? ? 1_555 F K . K ? ? C C 122 C K 404 1_555 ? ? ? ? ? ? ? 3.622 ? ? metalc8 metalc ? ? A C 22 OP2 ? ? ? 1_555 F K . K ? ? C C 122 C K 404 1_555 ? ? ? ? ? ? ? 3.123 ? ? metalc9 metalc ? ? A C 22 OP1 ? ? ? 1_555 K MG . MG ? ? C C 122 C MG 415 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc10 metalc ? ? A A 23 OP1 ? ? ? 1_555 F K . K ? ? C A 123 C K 404 1_555 ? ? ? ? ? ? ? 2.806 ? ? metalc11 metalc ? ? A A 23 OP2 ? ? ? 1_555 G MG . MG ? ? C A 123 C MG 405 1_555 ? ? ? ? ? ? ? 1.991 ? ? metalc12 metalc ? ? A A 36 "O2'" ? ? ? 1_555 P MG . MG ? ? C A 136 C MG 421 1_555 ? ? ? ? ? ? ? 2.771 ? ? metalc13 metalc ? ? A G 37 O6 ? ? ? 1_555 P MG . MG ? ? C G 137 C MG 421 1_555 ? ? ? ? ? ? ? 2.875 ? ? metalc14 metalc ? ? A G 43 O6 ? ? ? 1_555 G MG . MG ? ? C G 143 C MG 405 1_555 ? ? ? ? ? ? ? 2.972 ? ? metalc15 metalc ? ? A U 44 O4 ? ? ? 1_555 G MG . MG ? ? C U 144 C MG 405 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc16 metalc ? ? F K . K ? ? ? 1_555 K MG . MG ? ? C K 404 C MG 415 1_555 ? ? ? ? ? ? ? 3.644 ? ? metalc17 metalc ? ? H MG . MG ? ? ? 1_555 B A 36 OP1 ? ? C MG 407 D A 336 1_555 ? ? ? ? ? ? ? 2.406 ? ? metalc18 metalc ? ? J MG . MG ? ? ? 1_555 CA HOH . O ? ? C MG 409 C HOH 806 1_555 ? ? ? ? ? ? ? 2.197 ? ? metalc19 metalc ? ? P MG . MG ? ? ? 1_555 CA HOH . O ? ? C MG 421 C HOH 807 1_555 ? ? ? ? ? ? ? 2.432 ? ? metalc20 metalc ? ? B A 7 N7 ? ? ? 1_555 V MG . MG ? ? D A 307 D MG 411 1_555 ? ? ? ? ? ? ? 3.113 ? ? metalc21 metalc ? ? B A 11 OP2 ? ? ? 1_555 Z MG . MG ? ? D A 311 D MG 418 1_555 ? ? ? ? ? ? ? 2.945 ? ? metalc22 metalc ? ? B G 13 OP2 ? ? ? 1_555 AA MG . MG ? ? D G 313 D MG 422 1_555 ? ? ? ? ? ? ? 2.621 ? ? metalc23 metalc ? ? B A 19 "O3'" ? ? ? 1_555 S K . K ? ? D A 319 D K 403 1_555 ? ? ? ? ? ? ? 3.174 ? ? metalc24 metalc ? ? B A 20 OP2 ? ? ? 1_555 S K . K ? ? D A 320 D K 403 1_555 ? ? ? ? ? ? ? 2.825 ? ? metalc25 metalc ? ? B A 20 OP2 ? ? ? 1_555 T MG . MG ? ? D A 320 D MG 406 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc26 metalc ? ? B C 22 "O5'" ? ? ? 1_555 S K . K ? ? D C 322 D K 403 1_555 ? ? ? ? ? ? ? 3.340 ? ? metalc27 metalc ? ? B C 22 OP2 ? ? ? 1_555 S K . K ? ? D C 322 D K 403 1_555 ? ? ? ? ? ? ? 3.470 ? ? metalc28 metalc ? ? B C 22 OP1 ? ? ? 1_555 S K . K ? ? D C 322 D K 403 1_555 ? ? ? ? ? ? ? 3.106 ? ? metalc29 metalc ? ? B C 22 OP1 ? ? ? 1_555 T MG . MG ? ? D C 322 D MG 406 1_555 ? ? ? ? ? ? ? 2.210 ? ? metalc30 metalc ? ? B A 23 OP1 ? ? ? 1_555 S K . K ? ? D A 323 D K 403 1_555 ? ? ? ? ? ? ? 2.781 ? ? metalc31 metalc ? ? B A 36 "O2'" ? ? ? 1_555 V MG . MG ? ? D A 336 D MG 411 1_555 ? ? ? ? ? ? ? 3.008 ? ? metalc32 metalc ? ? B G 37 OP2 ? ? ? 1_555 V MG . MG ? ? D G 337 D MG 411 1_555 ? ? ? ? ? ? ? 2.832 ? ? metalc33 metalc ? ? B G 37 N7 ? ? ? 1_555 V MG . MG ? ? D G 337 D MG 411 1_555 ? ? ? ? ? ? ? 3.147 ? ? metalc34 metalc ? ? S K . K ? ? ? 1_555 BA GOL . O1 ? ? D K 403 D GOL 704 1_555 ? ? ? ? ? ? ? 3.153 ? ? metalc35 metalc ? ? U MG . MG ? ? ? 1_555 DA HOH . O ? ? D MG 410 D HOH 811 1_555 ? ? ? ? ? ? ? 2.405 ? ? metalc36 metalc ? ? V MG . MG ? ? ? 1_555 DA HOH . O ? ? D MG 411 D HOH 810 1_555 ? ? ? ? ? ? ? 2.677 ? ? metalc37 metalc ? ? W MG . MG ? ? ? 1_555 DA HOH . O ? ? D MG 412 D HOH 809 1_555 ? ? ? ? ? ? ? 2.539 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A U 58 O2 ? ? C GTP 101 C U 158 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A U 58 N3 ? ? C GTP 101 C U 158 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 57 N1 ? ? C C 102 C G 157 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 57 O6 ? ? C C 102 C G 157 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 57 N2 ? ? C C 102 C G 157 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 56 N1 ? ? C C 103 C G 156 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 56 O6 ? ? C C 103 C G 156 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 56 N2 ? ? C C 103 C G 156 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 55 N3 ? ? C A 104 C U 155 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 55 O4 ? ? C A 104 C U 155 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N2 ? ? ? 1_555 A A 35 N3 ? ? C G 105 C A 135 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 54 N3 ? ? C G 105 C C 154 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 54 O2 ? ? C G 105 C C 154 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 54 N4 ? ? C G 105 C C 154 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A A 53 N7 ? ? C G 106 C A 153 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog16 hydrog ? ? A G 6 N3 ? ? ? 1_555 A A 53 N6 ? ? C G 106 C A 153 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 31 N3 ? ? C A 107 C U 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 31 O4 ? ? C A 107 C U 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 30 N1 ? ? C U 108 C A 130 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 29 N3 ? ? C G 109 C C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 29 O2 ? ? C G 109 C C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 29 N4 ? ? C G 109 C C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 38 N7 ? ? C U 110 C A 138 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog24 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 38 N6 ? ? C U 110 C A 138 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog25 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 26 N1 ? ? C U 112 C A 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 26 N6 ? ? C U 112 C A 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 25 N3 ? ? C G 113 C C 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 25 O2 ? ? C G 113 C C 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 25 N4 ? ? C G 113 C C 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 24 N1 ? ? C C 114 C G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 24 O6 ? ? C C 114 C G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 24 N2 ? ? C C 114 C G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 15 O2 ? ? ? 1_555 A A 23 N6 ? ? C U 115 C A 123 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog34 hydrog ? ? A G 21 N1 ? ? ? 1_555 A G 41 O6 ? ? C G 121 C G 141 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? A G 21 N2 ? ? ? 1_555 A G 41 N7 ? ? C G 121 C G 141 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 50 N4 ? ? C G 121 C C 150 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog37 hydrog ? ? A C 22 O2 ? ? ? 1_555 A C 42 N4 ? ? C C 122 C C 142 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog38 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 49 O6 ? ? C C 122 C G 149 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog39 hydrog ? ? A U 32 N3 ? ? ? 1_555 A A 36 N1 ? ? C U 132 C A 136 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog40 hydrog ? ? A U 32 O2 ? ? ? 1_555 A A 36 N6 ? ? C U 132 C A 136 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog41 hydrog ? ? A G 37 N1 ? ? ? 1_555 A C 52 N3 ? ? C G 137 C C 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 37 N2 ? ? ? 1_555 A C 52 O2 ? ? C G 137 C C 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 37 O6 ? ? ? 1_555 A C 52 N4 ? ? C G 137 C C 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 39 N2 ? ? ? 1_555 A U 40 O4 ? ? C G 139 C U 140 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog45 hydrog ? ? A G 39 N2 ? ? ? 1_555 A U 51 O4 ? ? C G 139 C U 151 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog46 hydrog ? ? A U 40 N3 ? ? ? 1_555 A U 51 O2 ? ? C U 140 C U 151 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog47 hydrog ? ? A U 40 O4 ? ? ? 1_555 A U 51 N3 ? ? C U 140 C U 151 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog48 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 50 N3 ? ? C G 141 C C 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 50 O2 ? ? C G 141 C C 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 50 N4 ? ? C G 141 C C 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 49 N1 ? ? C C 142 C G 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 49 O6 ? ? C C 142 C G 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 49 N2 ? ? C C 142 C G 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 43 N2 ? ? ? 1_555 A A 48 N7 ? ? C G 143 C A 148 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog55 hydrog ? ? A G 43 N3 ? ? ? 1_555 A A 48 N6 ? ? C G 143 C A 148 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog56 hydrog ? ? B GTP 1 N1 ? ? ? 1_555 B U 58 O2 ? ? D GTP 301 D U 358 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog57 hydrog ? ? B GTP 1 O6 ? ? ? 1_555 B U 58 N3 ? ? D GTP 301 D U 358 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog58 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 57 N1 ? ? D C 302 D G 357 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 57 O6 ? ? D C 302 D G 357 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 57 N2 ? ? D C 302 D G 357 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 56 N1 ? ? D C 303 D G 356 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 56 O6 ? ? D C 303 D G 356 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 56 N2 ? ? D C 303 D G 356 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 55 N3 ? ? D A 304 D U 355 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 55 O4 ? ? D A 304 D U 355 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 5 N2 ? ? ? 1_555 B A 35 N3 ? ? D G 305 D A 335 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog67 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 54 N3 ? ? D G 305 D C 354 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 54 O2 ? ? D G 305 D C 354 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 54 N4 ? ? D G 305 D C 354 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 6 N2 ? ? ? 1_555 B A 53 N7 ? ? D G 306 D A 353 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog71 hydrog ? ? B G 6 N3 ? ? ? 1_555 B A 53 N6 ? ? D G 306 D A 353 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog72 hydrog ? ? B A 7 N1 ? ? ? 1_555 B U 31 N3 ? ? D A 307 D U 331 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B A 7 N6 ? ? ? 1_555 B U 31 O4 ? ? D A 307 D U 331 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 30 N1 ? ? D U 308 D A 330 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 30 N6 ? ? D U 308 D A 330 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B G 9 N1 ? ? ? 1_555 B C 29 N3 ? ? D G 309 D C 329 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B G 9 N2 ? ? ? 1_555 B C 29 O2 ? ? D G 309 D C 329 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 29 N4 ? ? D G 309 D C 329 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 38 N7 ? ? D U 310 D A 338 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog80 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 38 N6 ? ? D U 310 D A 338 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog81 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 26 N1 ? ? D U 312 D A 326 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 26 N6 ? ? D U 312 D A 326 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 13 N1 ? ? ? 1_555 B C 25 N3 ? ? D G 313 D C 325 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 13 N2 ? ? ? 1_555 B C 25 O2 ? ? D G 313 D C 325 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 13 O6 ? ? ? 1_555 B C 25 N4 ? ? D G 313 D C 325 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 24 N1 ? ? D C 314 D G 324 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 24 O6 ? ? D C 314 D G 324 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 24 N2 ? ? D C 314 D G 324 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B U 15 O2 ? ? ? 1_555 B A 23 N6 ? ? D U 315 D A 323 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog90 hydrog ? ? B G 21 N1 ? ? ? 1_555 B G 41 O6 ? ? D G 321 D G 341 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog91 hydrog ? ? B G 21 N2 ? ? ? 1_555 B G 41 N7 ? ? D G 321 D G 341 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog92 hydrog ? ? B G 21 O6 ? ? ? 1_555 B C 50 N4 ? ? D G 321 D C 350 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog93 hydrog ? ? B C 22 N3 ? ? ? 1_555 B C 42 N4 ? ? D C 322 D C 342 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog94 hydrog ? ? B C 22 N4 ? ? ? 1_555 B G 49 O6 ? ? D C 322 D G 349 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog95 hydrog ? ? B U 32 N3 ? ? ? 1_555 B A 36 N1 ? ? D U 332 D A 336 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog96 hydrog ? ? B U 32 O2 ? ? ? 1_555 B A 36 N6 ? ? D U 332 D A 336 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog97 hydrog ? ? B G 37 N1 ? ? ? 1_555 B C 52 N3 ? ? D G 337 D C 352 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B G 37 N2 ? ? ? 1_555 B C 52 O2 ? ? D G 337 D C 352 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B G 37 O6 ? ? ? 1_555 B C 52 N4 ? ? D G 337 D C 352 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B G 39 N2 ? ? ? 1_555 B U 40 O4 ? ? D G 339 D U 340 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog101 hydrog ? ? B G 39 N2 ? ? ? 1_555 B U 51 O4 ? ? D G 339 D U 351 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog102 hydrog ? ? B U 40 N3 ? ? ? 1_555 B U 51 O2 ? ? D U 340 D U 351 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog103 hydrog ? ? B U 40 O4 ? ? ? 1_555 B U 51 N3 ? ? D U 340 D U 351 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog104 hydrog ? ? B G 41 N1 ? ? ? 1_555 B C 50 N3 ? ? D G 341 D C 350 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B G 41 N2 ? ? ? 1_555 B C 50 O2 ? ? D G 341 D C 350 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B G 41 O6 ? ? ? 1_555 B C 50 N4 ? ? D G 341 D C 350 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B C 42 N3 ? ? ? 1_555 B G 49 N1 ? ? D C 342 D G 349 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 42 N4 ? ? ? 1_555 B G 49 O6 ? ? D C 342 D G 349 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B C 42 O2 ? ? ? 1_555 B G 49 N2 ? ? D C 342 D G 349 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B G 43 N2 ? ? ? 1_555 B A 48 N7 ? ? D G 343 D A 348 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog111 hydrog ? ? B G 43 N3 ? ? ? 1_555 B A 48 N6 ? ? D G 343 D A 348 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel B 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA C 33 ? ILE C 35 ? ALA A 33 ILE A 35 A 2 ILE C 72 ? VAL C 74 ? ILE A 72 VAL A 74 B 1 ALA D 33 ? LYS D 36 ? ALA B 233 LYS B 236 B 2 ILE D 72 ? GLU D 75 ? ILE B 272 GLU B 275 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE C 35 ? N ILE A 35 O VAL C 73 ? O VAL A 73 B 1 2 N ILE D 35 ? N ILE B 235 O VAL D 73 ? O VAL B 273 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software D 3CO 401 ? 1 'BINDING SITE FOR RESIDUE 3CO D 401' AC2 Software D K 403 ? 5 'BINDING SITE FOR RESIDUE K D 403' AC3 Software C K 404 ? 5 'BINDING SITE FOR RESIDUE K C 404' AC4 Software C MG 405 ? 3 'BINDING SITE FOR RESIDUE MG C 405' AC5 Software D MG 406 ? 3 'BINDING SITE FOR RESIDUE MG D 406' AC6 Software C MG 407 ? 3 'BINDING SITE FOR RESIDUE MG C 407' AC7 Software C MG 408 ? 1 'BINDING SITE FOR RESIDUE MG C 408' AC8 Software C MG 409 ? 3 'BINDING SITE FOR RESIDUE MG C 409' AC9 Software D MG 410 ? 1 'BINDING SITE FOR RESIDUE MG D 410' BC1 Software D MG 411 ? 4 'BINDING SITE FOR RESIDUE MG D 411' BC2 Software D MG 412 ? 3 'BINDING SITE FOR RESIDUE MG D 412' BC3 Software D MG 413 ? 1 'BINDING SITE FOR RESIDUE MG D 413' BC4 Software C MG 415 ? 3 'BINDING SITE FOR RESIDUE MG C 415' BC5 Software C MG 416 ? 1 'BINDING SITE FOR RESIDUE MG C 416' BC6 Software D MG 418 ? 2 'BINDING SITE FOR RESIDUE MG D 418' BC7 Software C MG 420 ? 1 'BINDING SITE FOR RESIDUE MG C 420' BC8 Software C MG 421 ? 5 'BINDING SITE FOR RESIDUE MG C 421' BC9 Software D MG 422 ? 2 'BINDING SITE FOR RESIDUE MG D 422' CC1 Software D GOL 704 ? 8 'BINDING SITE FOR RESIDUE GOL D 704' CC2 Software C GOL 705 ? 4 'BINDING SITE FOR RESIDUE GOL C 705' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 G B 37 ? G D 337 . ? 1_555 ? 2 AC2 5 A B 19 ? A D 319 . ? 1_555 ? 3 AC2 5 A B 20 ? A D 320 . ? 1_555 ? 4 AC2 5 C B 22 ? C D 322 . ? 1_555 ? 5 AC2 5 A B 23 ? A D 323 . ? 1_555 ? 6 AC2 5 GOL BA . ? GOL D 704 . ? 1_555 ? 7 AC3 5 A A 19 ? A C 119 . ? 1_555 ? 8 AC3 5 A A 20 ? A C 120 . ? 1_555 ? 9 AC3 5 C A 22 ? C C 122 . ? 1_555 ? 10 AC3 5 A A 23 ? A C 123 . ? 1_555 ? 11 AC3 5 MG K . ? MG C 415 . ? 1_555 ? 12 AC4 3 A A 23 ? A C 123 . ? 1_555 ? 13 AC4 3 G A 43 ? G C 143 . ? 1_555 ? 14 AC4 3 U A 44 ? U C 144 . ? 1_555 ? 15 AC5 3 G B 13 ? G D 313 . ? 1_555 ? 16 AC5 3 A B 20 ? A D 320 . ? 1_555 ? 17 AC5 3 C B 22 ? C D 322 . ? 1_555 ? 18 AC6 3 U A 15 ? U C 115 . ? 1_555 ? 19 AC6 3 U A 16 ? U C 116 . ? 1_555 ? 20 AC6 3 A B 36 ? A D 336 . ? 1_555 ? 21 AC7 1 G A 13 ? G C 113 . ? 1_555 ? 22 AC8 3 A A 4 ? A C 104 . ? 1_555 ? 23 AC8 3 G A 6 ? G C 106 . ? 1_555 ? 24 AC8 3 HOH CA . ? HOH C 806 . ? 1_555 ? 25 AC9 1 HOH DA . ? HOH D 811 . ? 1_555 ? 26 BC1 4 A B 7 ? A D 307 . ? 1_555 ? 27 BC1 4 A B 36 ? A D 336 . ? 1_555 ? 28 BC1 4 G B 37 ? G D 337 . ? 1_555 ? 29 BC1 4 HOH DA . ? HOH D 810 . ? 1_555 ? 30 BC2 3 U B 8 ? U D 308 . ? 1_555 ? 31 BC2 3 U B 10 ? U D 310 . ? 1_555 ? 32 BC2 3 HOH DA . ? HOH D 809 . ? 1_555 ? 33 BC3 1 G B 6 ? G D 306 . ? 1_555 ? 34 BC4 3 A A 20 ? A C 120 . ? 1_555 ? 35 BC4 3 C A 22 ? C C 122 . ? 1_555 ? 36 BC4 3 K F . ? K C 404 . ? 1_555 ? 37 BC5 1 G A 21 ? G C 121 . ? 1_555 ? 38 BC6 2 U B 8 ? U D 308 . ? 1_555 ? 39 BC6 2 A B 11 ? A D 311 . ? 1_555 ? 40 BC7 1 U A 10 ? U C 110 . ? 1_555 ? 41 BC8 5 G A 6 ? G C 106 . ? 1_555 ? 42 BC8 5 A A 7 ? A C 107 . ? 1_555 ? 43 BC8 5 A A 36 ? A C 136 . ? 1_555 ? 44 BC8 5 G A 37 ? G C 137 . ? 1_555 ? 45 BC8 5 HOH CA . ? HOH C 807 . ? 1_555 ? 46 BC9 2 G B 13 ? G D 313 . ? 1_555 ? 47 BC9 2 A B 20 ? A D 320 . ? 1_555 ? 48 CC1 8 A B 19 ? A D 319 . ? 1_555 ? 49 CC1 8 C B 22 ? C D 322 . ? 1_555 ? 50 CC1 8 A B 23 ? A D 323 . ? 1_555 ? 51 CC1 8 G B 43 ? G D 343 . ? 1_555 ? 52 CC1 8 U B 44 ? U D 344 . ? 1_555 ? 53 CC1 8 A B 46 ? A D 346 . ? 1_555 ? 54 CC1 8 U B 47 ? U D 347 . ? 1_555 ? 55 CC1 8 K S . ? K D 403 . ? 1_555 ? 56 CC2 4 GTP A 1 ? GTP C 101 . ? 1_555 ? 57 CC2 4 G A 57 ? G C 157 . ? 1_555 ? 58 CC2 4 GTP B 1 ? GTP D 301 . ? 7_555 ? 59 CC2 4 U B 58 ? U D 358 . ? 7_555 ? # _database_PDB_matrix.entry_id 1Y39 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Y39 _atom_sites.fract_transf_matrix[1][1] 0.006656 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006656 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015877 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO K MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 101 101 GTP GTP C . n A 1 2 C 2 102 102 C C C . n A 1 3 C 3 103 103 C C C . n A 1 4 A 4 104 104 A A C . n A 1 5 G 5 105 105 G G C . n A 1 6 G 6 106 106 G G C . n A 1 7 A 7 107 107 A A C . n A 1 8 U 8 108 108 U U C . n A 1 9 G 9 109 109 G G C . n A 1 10 U 10 110 110 U U C . n A 1 11 A 11 111 111 A A C . n A 1 12 U 12 112 112 U U C . n A 1 13 G 13 113 113 G G C . n A 1 14 C 14 114 114 C C C . n A 1 15 U 15 115 115 U U C . n A 1 16 U 16 116 116 U U C . n A 1 17 A 17 117 117 A A C . n A 1 18 G 18 118 118 G G C . n A 1 19 A 19 119 119 A A C . n A 1 20 A 20 120 120 A A C . n A 1 21 G 21 121 121 G G C . n A 1 22 C 22 122 122 C C C . n A 1 23 A 23 123 123 A A C . n A 1 24 G 24 124 124 G G C . n A 1 25 C 25 125 125 C C C . n A 1 26 A 26 126 126 A A C . n A 1 27 A 27 127 127 A A C . n A 1 28 U 28 128 128 U U C . n A 1 29 C 29 129 129 C C C . n A 1 30 A 30 130 130 A A C . n A 1 31 U 31 131 131 U U C . n A 1 32 U 32 132 132 U U C . n A 1 33 U 33 133 133 U U C . n A 1 34 A 34 134 134 A A C . n A 1 35 A 35 135 135 A A C . n A 1 36 A 36 136 136 A A C . n A 1 37 G 37 137 137 G G C . n A 1 38 A 38 138 138 A A C . n A 1 39 G 39 139 139 G G C . n A 1 40 U 40 140 140 U U C . n A 1 41 G 41 141 141 G G C . n A 1 42 C 42 142 142 C C C . n A 1 43 G 43 143 143 G G C . n A 1 44 U 44 144 144 U U C . n A 1 45 A 45 145 145 A A C . n A 1 46 A 46 146 146 A A C . n A 1 47 U 47 147 147 U U C . n A 1 48 A 48 148 148 A A C . n A 1 49 G 49 149 149 G G C . n A 1 50 C 50 150 150 C C C . n A 1 51 U 51 151 151 U U C . n A 1 52 C 52 152 152 C C C . n A 1 53 A 53 153 153 A A C . n A 1 54 C 54 154 154 C C C . n A 1 55 U 55 155 155 U U C . n A 1 56 G 56 156 156 G G C . n A 1 57 G 57 157 157 G G C . n A 1 58 U 58 158 158 U U C . n B 1 1 GTP 1 301 301 GTP GTP D . n B 1 2 C 2 302 302 C C D . n B 1 3 C 3 303 303 C C D . n B 1 4 A 4 304 304 A A D . n B 1 5 G 5 305 305 G G D . n B 1 6 G 6 306 306 G G D . n B 1 7 A 7 307 307 A A D . n B 1 8 U 8 308 308 U U D . n B 1 9 G 9 309 309 G G D . n B 1 10 U 10 310 310 U U D . n B 1 11 A 11 311 311 A A D . n B 1 12 U 12 312 312 U U D . n B 1 13 G 13 313 313 G G D . n B 1 14 C 14 314 314 C C D . n B 1 15 U 15 315 315 U U D . n B 1 16 U 16 316 316 U U D . n B 1 17 A 17 317 317 A A D . n B 1 18 G 18 318 318 G G D . n B 1 19 A 19 319 319 A A D . n B 1 20 A 20 320 320 A A D . n B 1 21 G 21 321 321 G G D . n B 1 22 C 22 322 322 C C D . n B 1 23 A 23 323 323 A A D . n B 1 24 G 24 324 324 G G D . n B 1 25 C 25 325 325 C C D . n B 1 26 A 26 326 326 A A D . n B 1 27 A 27 327 327 A A D . n B 1 28 U 28 328 328 U U D . n B 1 29 C 29 329 329 C C D . n B 1 30 A 30 330 330 A A D . n B 1 31 U 31 331 331 U U D . n B 1 32 U 32 332 332 U U D . n B 1 33 U 33 333 333 U U D . n B 1 34 A 34 334 334 A A D . n B 1 35 A 35 335 335 A A D . n B 1 36 A 36 336 336 A A D . n B 1 37 G 37 337 337 G G D . n B 1 38 A 38 338 338 A A D . n B 1 39 G 39 339 339 G G D . n B 1 40 U 40 340 340 U U D . n B 1 41 G 41 341 341 G G D . n B 1 42 C 42 342 342 C C D . n B 1 43 G 43 343 343 G G D . n B 1 44 U 44 344 344 U U D . n B 1 45 A 45 345 345 A A D . n B 1 46 A 46 346 346 A A D . n B 1 47 U 47 347 347 U U D . n B 1 48 A 48 348 348 A A D . n B 1 49 G 49 349 349 G G D . n B 1 50 C 50 350 350 C C D . n B 1 51 U 51 351 351 U U D . n B 1 52 C 52 352 352 C C D . n B 1 53 A 53 353 353 A A D . n B 1 54 C 54 354 354 C C D . n B 1 55 U 55 355 355 U U D . n B 1 56 G 56 356 356 G G D . n B 1 57 G 57 357 357 G G D . n B 1 58 U 58 358 358 U U D . n C 2 1 PHE 1 1 ? ? ? A . n C 2 2 THR 2 2 2 THR ALA A . n C 2 3 PHE 3 3 3 PHE PHE A . n C 2 4 ILE 4 4 4 ILE ILE A . n C 2 5 THR 5 5 5 THR THR A . n C 2 6 LYS 6 6 6 LYS LYS A . n C 2 7 THR 7 7 7 THR THR A . n C 2 8 PRO 8 8 8 PRO PRO A . n C 2 9 PRO 9 9 9 PRO PRO A . n C 2 10 ALA 10 10 10 ALA ALA A . n C 2 11 ALA 11 11 11 ALA ALA A . n C 2 12 VAL 12 12 12 VAL VAL A . n C 2 13 LEU 13 13 13 LEU LEU A . n C 2 14 LEU 14 14 14 LEU LEU A . n C 2 15 LYS 15 15 15 LYS LYS A . n C 2 16 LYS 16 16 16 LYS LYS A . n C 2 17 ALA 17 17 17 ALA ALA A . n C 2 18 ALA 18 18 18 ALA ALA A . n C 2 19 GLY 19 19 19 GLY GLY A . n C 2 20 ILE 20 20 20 ILE ILE A . n C 2 21 GLU 21 21 21 GLU GLU A . n C 2 22 SER 22 22 22 SER SER A . n C 2 23 GLY 23 23 23 GLY GLY A . n C 2 24 SER 24 24 24 SER SER A . n C 2 25 GLY 25 25 25 GLY GLY A . n C 2 26 GLU 26 26 26 GLU GLU A . n C 2 27 PRO 27 27 27 PRO PRO A . n C 2 28 ASN 28 28 28 ASN ASN A . n C 2 29 ARG 29 29 29 ARG ARG A . n C 2 30 ASN 30 30 30 ASN ASN A . n C 2 31 LYS 31 31 31 LYS LYS A . n C 2 32 VAL 32 32 32 VAL VAL A . n C 2 33 ALA 33 33 33 ALA ALA A . n C 2 34 THR 34 34 34 THR THR A . n C 2 35 ILE 35 35 35 ILE ILE A . n C 2 36 LYS 36 36 36 LYS LYS A . n C 2 37 ARG 37 37 37 ARG ARG A . n C 2 38 ASP 38 38 38 ASP ASP A . n C 2 39 LYS 39 39 39 LYS LYS A . n C 2 40 VAL 40 40 40 VAL VAL A . n C 2 41 ARG 41 41 41 ARG ARG A . n C 2 42 GLU 42 42 42 GLU GLU A . n C 2 43 ILE 43 43 43 ILE ILE A . n C 2 44 ALA 44 44 44 ALA ALA A . n C 2 45 GLU 45 45 45 GLU GLU A . n C 2 46 LEU 46 46 46 LEU LEU A . n C 2 47 LYS 47 47 47 LYS LYS A . n C 2 48 MET 48 48 48 MET MET A . n C 2 49 PRO 49 49 49 PRO PRO A . n C 2 50 ASP 50 50 50 ASP ASP A . n C 2 51 LEU 51 51 51 LEU LEU A . n C 2 52 ASN 52 52 52 ASN ASN A . n C 2 53 ALA 53 53 53 ALA ALA A . n C 2 54 ALA 54 54 54 ALA ALA A . n C 2 55 SER 55 55 55 SER SER A . n C 2 56 ILE 56 56 56 ILE ILE A . n C 2 57 GLU 57 57 57 GLU GLU A . n C 2 58 ALA 58 58 58 ALA ALA A . n C 2 59 ALA 59 59 59 ALA ALA A . n C 2 60 MET 60 60 60 MET MET A . n C 2 61 ARG 61 61 61 ARG ARG A . n C 2 62 MET 62 62 62 MET MET A . n C 2 63 ILE 63 63 63 ILE ILE A . n C 2 64 GLU 64 64 64 GLU GLU A . n C 2 65 GLY 65 65 65 GLY GLY A . n C 2 66 THR 66 66 66 THR THR A . n C 2 67 ALA 67 67 67 ALA ALA A . n C 2 68 ARG 68 68 68 ARG ARG A . n C 2 69 ASN 69 69 69 ASN ASN A . n C 2 70 MET 70 70 70 MET MET A . n C 2 71 GLY 71 71 71 GLY GLY A . n C 2 72 ILE 72 72 72 ILE ILE A . n C 2 73 VAL 73 73 73 VAL VAL A . n C 2 74 VAL 74 74 74 VAL VAL A . n C 2 75 GLU 75 75 75 GLU GLU A . n C 2 76 ASP 76 76 ? ? ? A . n D 2 1 PHE 1 201 ? ? ? B . n D 2 2 THR 2 202 ? ? ? B . n D 2 3 PHE 3 203 ? ? ? B . n D 2 4 ILE 4 204 ? ? ? B . n D 2 5 THR 5 205 205 THR THR B . n D 2 6 LYS 6 206 206 LYS LYS B . n D 2 7 THR 7 207 207 THR THR B . n D 2 8 PRO 8 208 208 PRO PRO B . n D 2 9 PRO 9 209 209 PRO PRO B . n D 2 10 ALA 10 210 210 ALA ALA B . n D 2 11 ALA 11 211 211 ALA ALA B . n D 2 12 VAL 12 212 212 VAL VAL B . n D 2 13 LEU 13 213 213 LEU LEU B . n D 2 14 LEU 14 214 214 LEU LEU B . n D 2 15 LYS 15 215 215 LYS LYS B . n D 2 16 LYS 16 216 216 LYS LYS B . n D 2 17 ALA 17 217 217 ALA ALA B . n D 2 18 ALA 18 218 218 ALA ALA B . n D 2 19 GLY 19 219 219 GLY GLY B . n D 2 20 ILE 20 220 220 ILE ILE B . n D 2 21 GLU 21 221 221 GLU GLU B . n D 2 22 SER 22 222 222 SER SER B . n D 2 23 GLY 23 223 223 GLY GLY B . n D 2 24 SER 24 224 224 SER SER B . n D 2 25 GLY 25 225 225 GLY GLY B . n D 2 26 GLU 26 226 226 GLU GLU B . n D 2 27 PRO 27 227 227 PRO PRO B . n D 2 28 ASN 28 228 228 ASN ASN B . n D 2 29 ARG 29 229 229 ARG ARG B . n D 2 30 ASN 30 230 230 ASN ASN B . n D 2 31 LYS 31 231 231 LYS LYS B . n D 2 32 VAL 32 232 232 VAL VAL B . n D 2 33 ALA 33 233 233 ALA ALA B . n D 2 34 THR 34 234 234 THR THR B . n D 2 35 ILE 35 235 235 ILE ILE B . n D 2 36 LYS 36 236 236 LYS LYS B . n D 2 37 ARG 37 237 237 ARG ARG B . n D 2 38 ASP 38 238 238 ASP ASP B . n D 2 39 LYS 39 239 239 LYS LYS B . n D 2 40 VAL 40 240 240 VAL VAL B . n D 2 41 ARG 41 241 241 ARG ARG B . n D 2 42 GLU 42 242 242 GLU GLU B . n D 2 43 ILE 43 243 243 ILE ILE B . n D 2 44 ALA 44 244 244 ALA ALA B . n D 2 45 GLU 45 245 245 GLU GLU B . n D 2 46 LEU 46 246 246 LEU LEU B . n D 2 47 LYS 47 247 247 LYS LYS B . n D 2 48 MET 48 248 248 MET MET B . n D 2 49 PRO 49 249 249 PRO PRO B . n D 2 50 ASP 50 250 250 ASP ASP B . n D 2 51 LEU 51 251 251 LEU LEU B . n D 2 52 ASN 52 252 252 ASN ASN B . n D 2 53 ALA 53 253 253 ALA ALA B . n D 2 54 ALA 54 254 254 ALA ALA B . n D 2 55 SER 55 255 255 SER SER B . n D 2 56 ILE 56 256 256 ILE ILE B . n D 2 57 GLU 57 257 257 GLU GLU B . n D 2 58 ALA 58 258 258 ALA ALA B . n D 2 59 ALA 59 259 259 ALA ALA B . n D 2 60 MET 60 260 260 MET MET B . n D 2 61 ARG 61 261 261 ARG ARG B . n D 2 62 MET 62 262 262 MET MET B . n D 2 63 ILE 63 263 263 ILE ILE B . n D 2 64 GLU 64 264 264 GLU GLU B . n D 2 65 GLY 65 265 265 GLY GLY B . n D 2 66 THR 66 266 266 THR THR B . n D 2 67 ALA 67 267 267 ALA ALA B . n D 2 68 ARG 68 268 268 ARG ARG B . n D 2 69 ASN 69 269 269 ASN ASN B . n D 2 70 MET 70 270 270 MET MET B . n D 2 71 GLY 71 271 271 GLY GLY B . n D 2 72 ILE 72 272 272 ILE ILE B . n D 2 73 VAL 73 273 273 VAL VAL B . n D 2 74 VAL 74 274 274 VAL VAL B . n D 2 75 GLU 75 275 275 GLU GLU B . n D 2 76 ASP 76 276 276 ASP ASP B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 3CO 1 402 402 3CO 3CO C . F 4 K 1 404 404 K K C . G 5 MG 1 405 405 MG MG C . H 5 MG 1 407 407 MG MG C . I 5 MG 1 408 408 MG MG C . J 5 MG 1 409 409 MG MG C . K 5 MG 1 415 415 MG MG C . L 5 MG 1 416 416 MG MG C . M 5 MG 1 417 417 MG MG C . N 5 MG 1 419 419 MG MG C . O 5 MG 1 420 420 MG MG C . P 5 MG 1 421 421 MG MG C . Q 6 GOL 1 705 705 GOL GOL C . R 3 3CO 1 401 401 3CO 3CO D . S 4 K 1 403 403 K K D . T 5 MG 1 406 406 MG MG D . U 5 MG 1 410 410 MG MG D . V 5 MG 1 411 411 MG MG D . W 5 MG 1 412 412 MG MG D . X 5 MG 1 413 413 MG MG D . Y 5 MG 1 414 414 MG MG D . Z 5 MG 1 418 418 MG MG D . AA 5 MG 1 422 422 MG MG D . BA 6 GOL 1 704 704 GOL GOL D . CA 7 HOH 1 453 453 HOH TIP C . CA 7 HOH 2 801 801 HOH TIP C . CA 7 HOH 3 805 805 HOH TIP C . CA 7 HOH 4 806 806 HOH TIP C . CA 7 HOH 5 807 807 HOH TIP C . CA 7 HOH 6 808 808 HOH TIP C . DA 7 HOH 1 802 802 HOH TIP D . DA 7 HOH 2 803 803 HOH TIP D . DA 7 HOH 3 804 804 HOH TIP D . DA 7 HOH 4 809 809 HOH TIP D . DA 7 HOH 5 810 810 HOH TIP D . DA 7 HOH 6 811 811 HOH TIP D . DA 7 HOH 7 814 814 HOH TIP D . EA 7 HOH 1 812 812 HOH TIP A . FA 7 HOH 1 813 813 HOH TIP B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GTP 1 C GTP 101 ? G "GUANOSINE-5'-TRIPHOSPHATE" 2 B GTP 1 D GTP 301 ? G "GUANOSINE-5'-TRIPHOSPHATE" # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,F,G,H,I,J,K,L,M,N,O,P,Q,CA,EA 2 1 B,D,R,S,T,U,V,W,X,Y,Z,AA,BA,DA,FA # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A U 16 ? C U 116 ? 1_555 MG ? H MG . ? C MG 407 ? 1_555 OP1 ? B A 36 ? D A 336 ? 1_555 84.0 ? 2 "O3'" ? A A 19 ? C A 119 ? 1_555 K ? F K . ? C K 404 ? 1_555 OP2 ? A A 20 ? C A 120 ? 1_555 50.9 ? 3 "O3'" ? A A 19 ? C A 119 ? 1_555 K ? F K . ? C K 404 ? 1_555 OP1 ? A C 22 ? C C 122 ? 1_555 113.6 ? 4 OP2 ? A A 20 ? C A 120 ? 1_555 K ? F K . ? C K 404 ? 1_555 OP1 ? A C 22 ? C C 122 ? 1_555 62.7 ? 5 "O3'" ? A A 19 ? C A 119 ? 1_555 K ? F K . ? C K 404 ? 1_555 "O5'" ? A C 22 ? C C 122 ? 1_555 146.2 ? 6 OP2 ? A A 20 ? C A 120 ? 1_555 K ? F K . ? C K 404 ? 1_555 "O5'" ? A C 22 ? C C 122 ? 1_555 101.4 ? 7 OP1 ? A C 22 ? C C 122 ? 1_555 K ? F K . ? C K 404 ? 1_555 "O5'" ? A C 22 ? C C 122 ? 1_555 43.9 ? 8 "O3'" ? A A 19 ? C A 119 ? 1_555 K ? F K . ? C K 404 ? 1_555 OP2 ? A C 22 ? C C 122 ? 1_555 104.9 ? 9 OP2 ? A A 20 ? C A 120 ? 1_555 K ? F K . ? C K 404 ? 1_555 OP2 ? A C 22 ? C C 122 ? 1_555 73.0 ? 10 OP1 ? A C 22 ? C C 122 ? 1_555 K ? F K . ? C K 404 ? 1_555 OP2 ? A C 22 ? C C 122 ? 1_555 49.8 ? 11 "O5'" ? A C 22 ? C C 122 ? 1_555 K ? F K . ? C K 404 ? 1_555 OP2 ? A C 22 ? C C 122 ? 1_555 42.3 ? 12 "O3'" ? A A 19 ? C A 119 ? 1_555 K ? F K . ? C K 404 ? 1_555 OP1 ? A A 23 ? C A 123 ? 1_555 147.9 ? 13 OP2 ? A A 20 ? C A 120 ? 1_555 K ? F K . ? C K 404 ? 1_555 OP1 ? A A 23 ? C A 123 ? 1_555 153.1 ? 14 OP1 ? A C 22 ? C C 122 ? 1_555 K ? F K . ? C K 404 ? 1_555 OP1 ? A A 23 ? C A 123 ? 1_555 94.9 ? 15 "O5'" ? A C 22 ? C C 122 ? 1_555 K ? F K . ? C K 404 ? 1_555 OP1 ? A A 23 ? C A 123 ? 1_555 65.6 ? 16 OP2 ? A C 22 ? C C 122 ? 1_555 K ? F K . ? C K 404 ? 1_555 OP1 ? A A 23 ? C A 123 ? 1_555 104.8 ? 17 "O3'" ? A A 19 ? C A 119 ? 1_555 K ? F K . ? C K 404 ? 1_555 MG ? K MG . ? C MG 415 ? 1_555 82.5 ? 18 OP2 ? A A 20 ? C A 120 ? 1_555 K ? F K . ? C K 404 ? 1_555 MG ? K MG . ? C MG 415 ? 1_555 33.2 ? 19 OP1 ? A C 22 ? C C 122 ? 1_555 K ? F K . ? C K 404 ? 1_555 MG ? K MG . ? C MG 415 ? 1_555 33.1 ? 20 "O5'" ? A C 22 ? C C 122 ? 1_555 K ? F K . ? C K 404 ? 1_555 MG ? K MG . ? C MG 415 ? 1_555 76.7 ? 21 OP2 ? A C 22 ? C C 122 ? 1_555 K ? F K . ? C K 404 ? 1_555 MG ? K MG . ? C MG 415 ? 1_555 67.2 ? 22 OP1 ? A A 23 ? C A 123 ? 1_555 K ? F K . ? C K 404 ? 1_555 MG ? K MG . ? C MG 415 ? 1_555 120.4 ? 23 OP2 ? A A 20 ? C A 120 ? 1_555 MG ? K MG . ? C MG 415 ? 1_555 OP1 ? A C 22 ? C C 122 ? 1_555 96.9 ? 24 OP2 ? A A 23 ? C A 123 ? 1_555 MG ? G MG . ? C MG 405 ? 1_555 O6 ? A G 43 ? C G 143 ? 1_555 131.2 ? 25 OP2 ? A A 23 ? C A 123 ? 1_555 MG ? G MG . ? C MG 405 ? 1_555 O4 ? A U 44 ? C U 144 ? 1_555 158.2 ? 26 O6 ? A G 43 ? C G 143 ? 1_555 MG ? G MG . ? C MG 405 ? 1_555 O4 ? A U 44 ? C U 144 ? 1_555 69.6 ? 27 "O2'" ? A A 36 ? C A 136 ? 1_555 MG ? P MG . ? C MG 421 ? 1_555 O6 ? A G 37 ? C G 137 ? 1_555 85.8 ? 28 "O2'" ? A A 36 ? C A 136 ? 1_555 MG ? P MG . ? C MG 421 ? 1_555 O ? CA HOH . ? C HOH 807 ? 1_555 74.2 ? 29 O6 ? A G 37 ? C G 137 ? 1_555 MG ? P MG . ? C MG 421 ? 1_555 O ? CA HOH . ? C HOH 807 ? 1_555 122.6 ? 30 N7 ? B A 7 ? D A 307 ? 1_555 MG ? V MG . ? D MG 411 ? 1_555 "O2'" ? B A 36 ? D A 336 ? 1_555 84.5 ? 31 N7 ? B A 7 ? D A 307 ? 1_555 MG ? V MG . ? D MG 411 ? 1_555 OP2 ? B G 37 ? D G 337 ? 1_555 84.2 ? 32 "O2'" ? B A 36 ? D A 336 ? 1_555 MG ? V MG . ? D MG 411 ? 1_555 OP2 ? B G 37 ? D G 337 ? 1_555 78.6 ? 33 N7 ? B A 7 ? D A 307 ? 1_555 MG ? V MG . ? D MG 411 ? 1_555 N7 ? B G 37 ? D G 337 ? 1_555 158.2 ? 34 "O2'" ? B A 36 ? D A 336 ? 1_555 MG ? V MG . ? D MG 411 ? 1_555 N7 ? B G 37 ? D G 337 ? 1_555 75.8 ? 35 OP2 ? B G 37 ? D G 337 ? 1_555 MG ? V MG . ? D MG 411 ? 1_555 N7 ? B G 37 ? D G 337 ? 1_555 83.1 ? 36 N7 ? B A 7 ? D A 307 ? 1_555 MG ? V MG . ? D MG 411 ? 1_555 O ? DA HOH . ? D HOH 810 ? 1_555 96.9 ? 37 "O2'" ? B A 36 ? D A 336 ? 1_555 MG ? V MG . ? D MG 411 ? 1_555 O ? DA HOH . ? D HOH 810 ? 1_555 59.2 ? 38 OP2 ? B G 37 ? D G 337 ? 1_555 MG ? V MG . ? D MG 411 ? 1_555 O ? DA HOH . ? D HOH 810 ? 1_555 137.4 ? 39 N7 ? B G 37 ? D G 337 ? 1_555 MG ? V MG . ? D MG 411 ? 1_555 O ? DA HOH . ? D HOH 810 ? 1_555 80.9 ? 40 "O3'" ? B A 19 ? D A 319 ? 1_555 K ? S K . ? D K 403 ? 1_555 OP2 ? B A 20 ? D A 320 ? 1_555 49.4 ? 41 "O3'" ? B A 19 ? D A 319 ? 1_555 K ? S K . ? D K 403 ? 1_555 "O5'" ? B C 22 ? D C 322 ? 1_555 142.7 ? 42 OP2 ? B A 20 ? D A 320 ? 1_555 K ? S K . ? D K 403 ? 1_555 "O5'" ? B C 22 ? D C 322 ? 1_555 96.4 ? 43 "O3'" ? B A 19 ? D A 319 ? 1_555 K ? S K . ? D K 403 ? 1_555 OP2 ? B C 22 ? D C 322 ? 1_555 105.6 ? 44 OP2 ? B A 20 ? D A 320 ? 1_555 K ? S K . ? D K 403 ? 1_555 OP2 ? B C 22 ? D C 322 ? 1_555 75.3 ? 45 "O5'" ? B C 22 ? D C 322 ? 1_555 K ? S K . ? D K 403 ? 1_555 OP2 ? B C 22 ? D C 322 ? 1_555 42.4 ? 46 "O3'" ? B A 19 ? D A 319 ? 1_555 K ? S K . ? D K 403 ? 1_555 OP1 ? B C 22 ? D C 322 ? 1_555 99.9 ? 47 OP2 ? B A 20 ? D A 320 ? 1_555 K ? S K . ? D K 403 ? 1_555 OP1 ? B C 22 ? D C 322 ? 1_555 51.0 ? 48 "O5'" ? B C 22 ? D C 322 ? 1_555 K ? S K . ? D K 403 ? 1_555 OP1 ? B C 22 ? D C 322 ? 1_555 45.8 ? 49 OP2 ? B C 22 ? D C 322 ? 1_555 K ? S K . ? D K 403 ? 1_555 OP1 ? B C 22 ? D C 322 ? 1_555 45.5 ? 50 "O3'" ? B A 19 ? D A 319 ? 1_555 K ? S K . ? D K 403 ? 1_555 OP1 ? B A 23 ? D A 323 ? 1_555 150.5 ? 51 OP2 ? B A 20 ? D A 320 ? 1_555 K ? S K . ? D K 403 ? 1_555 OP1 ? B A 23 ? D A 323 ? 1_555 146.8 ? 52 "O5'" ? B C 22 ? D C 322 ? 1_555 K ? S K . ? D K 403 ? 1_555 OP1 ? B A 23 ? D A 323 ? 1_555 66.2 ? 53 OP2 ? B C 22 ? D C 322 ? 1_555 K ? S K . ? D K 403 ? 1_555 OP1 ? B A 23 ? D A 323 ? 1_555 103.5 ? 54 OP1 ? B C 22 ? D C 322 ? 1_555 K ? S K . ? D K 403 ? 1_555 OP1 ? B A 23 ? D A 323 ? 1_555 104.1 ? 55 "O3'" ? B A 19 ? D A 319 ? 1_555 K ? S K . ? D K 403 ? 1_555 O1 ? BA GOL . ? D GOL 704 ? 1_555 94.9 ? 56 OP2 ? B A 20 ? D A 320 ? 1_555 K ? S K . ? D K 403 ? 1_555 O1 ? BA GOL . ? D GOL 704 ? 1_555 130.7 ? 57 "O5'" ? B C 22 ? D C 322 ? 1_555 K ? S K . ? D K 403 ? 1_555 O1 ? BA GOL . ? D GOL 704 ? 1_555 100.3 ? 58 OP2 ? B C 22 ? D C 322 ? 1_555 K ? S K . ? D K 403 ? 1_555 O1 ? BA GOL . ? D GOL 704 ? 1_555 86.7 ? 59 OP1 ? B C 22 ? D C 322 ? 1_555 K ? S K . ? D K 403 ? 1_555 O1 ? BA GOL . ? D GOL 704 ? 1_555 132.2 ? 60 OP1 ? B A 23 ? D A 323 ? 1_555 K ? S K . ? D K 403 ? 1_555 O1 ? BA GOL . ? D GOL 704 ? 1_555 81.7 ? 61 OP2 ? B A 20 ? D A 320 ? 1_555 MG ? T MG . ? D MG 406 ? 1_555 OP1 ? B C 22 ? D C 322 ? 1_555 71.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-22 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 5 'Structure model' 1 4 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.value' 22 4 'Structure model' '_struct_conn.conn_type_id' 23 4 'Structure model' '_struct_conn.id' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 40 4 'Structure model' '_struct_ref_seq_dif.details' 41 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 42 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 43 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 MOSFLM 'data reduction' . ? 2 CCP4 'data scaling' '(SCALA)' ? 3 AMoRE phasing . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 C C 102 ? ? P C C 102 ? ? OP2 C C 102 ? ? 109.80 119.60 -9.80 1.50 N 2 1 "O5'" C C 102 ? ? "C5'" C C 102 ? ? "C4'" C C 102 ? ? 103.53 109.40 -5.87 0.80 N 3 1 OP1 C C 103 ? ? P C C 103 ? ? OP2 C C 103 ? ? 109.91 119.60 -9.69 1.50 N 4 1 OP1 D C 302 ? ? P D C 302 ? ? OP2 D C 302 ? ? 109.86 119.60 -9.74 1.50 N 5 1 OP1 D C 303 ? ? P D C 303 ? ? OP2 D C 303 ? ? 109.52 119.60 -10.08 1.50 N 6 1 C B GLU 226 ? ? N B PRO 227 ? ? CA B PRO 227 ? ? 129.41 119.30 10.11 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 35 ? ? -122.01 -166.69 2 1 ALA B 233 ? ? 173.90 169.76 3 1 ARG B 237 ? ? -49.28 -3.37 4 1 GLU B 257 ? ? -90.45 -60.56 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A C 119 ? ? 0.059 'SIDE CHAIN' 2 1 G C 137 ? ? 0.067 'SIDE CHAIN' 3 1 U C 144 ? ? 0.065 'SIDE CHAIN' 4 1 U C 147 ? ? 0.067 'SIDE CHAIN' 5 1 U D 310 ? ? 0.069 'SIDE CHAIN' 6 1 A D 319 ? ? 0.066 'SIDE CHAIN' 7 1 A D 334 ? ? 0.061 'SIDE CHAIN' 8 1 U D 347 ? ? 0.116 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 2 ? OG1 ? C THR 2 OG1 2 1 Y 1 A THR 2 ? CG2 ? C THR 2 CG2 3 1 Y 0 A ASP 38 ? CG ? C ASP 38 CG 4 1 Y 0 A ASP 38 ? OD1 ? C ASP 38 OD1 5 1 Y 0 A ASP 38 ? OD2 ? C ASP 38 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PHE 1 ? C PHE 1 2 1 Y 1 A ASP 76 ? C ASP 76 3 1 Y 1 B PHE 201 ? D PHE 1 4 1 Y 1 B THR 202 ? D THR 2 5 1 Y 1 B PHE 203 ? D PHE 3 6 1 Y 1 B ILE 204 ? D ILE 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3CO CO CO N N 1 A OP3 O N N 2 A P P N N 3 A OP1 O N N 4 A OP2 O N N 5 A "O5'" O N N 6 A "C5'" C N N 7 A "C4'" C N R 8 A "O4'" O N N 9 A "C3'" C N S 10 A "O3'" O N N 11 A "C2'" C N R 12 A "O2'" O N N 13 A "C1'" C N R 14 A N9 N Y N 15 A C8 C Y N 16 A N7 N Y N 17 A C5 C Y N 18 A C6 C Y N 19 A N6 N N N 20 A N1 N Y N 21 A C2 C Y N 22 A N3 N Y N 23 A C4 C Y N 24 A HOP3 H N N 25 A HOP2 H N N 26 A "H5'" H N N 27 A "H5''" H N N 28 A "H4'" H N N 29 A "H3'" H N N 30 A "HO3'" H N N 31 A "H2'" H N N 32 A "HO2'" H N N 33 A "H1'" H N N 34 A H8 H N N 35 A H61 H N N 36 A H62 H N N 37 A H2 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 C OP3 O N N 112 C P P N N 113 C OP1 O N N 114 C OP2 O N N 115 C "O5'" O N N 116 C "C5'" C N N 117 C "C4'" C N R 118 C "O4'" O N N 119 C "C3'" C N S 120 C "O3'" O N N 121 C "C2'" C N R 122 C "O2'" O N N 123 C "C1'" C N R 124 C N1 N N N 125 C C2 C N N 126 C O2 O N N 127 C N3 N N N 128 C C4 C N N 129 C N4 N N N 130 C C5 C N N 131 C C6 C N N 132 C HOP3 H N N 133 C HOP2 H N N 134 C "H5'" H N N 135 C "H5''" H N N 136 C "H4'" H N N 137 C "H3'" H N N 138 C "HO3'" H N N 139 C "H2'" H N N 140 C "HO2'" H N N 141 C "H1'" H N N 142 C H41 H N N 143 C H42 H N N 144 C H5 H N N 145 C H6 H N N 146 G OP3 O N N 147 G P P N N 148 G OP1 O N N 149 G OP2 O N N 150 G "O5'" O N N 151 G "C5'" C N N 152 G "C4'" C N R 153 G "O4'" O N N 154 G "C3'" C N S 155 G "O3'" O N N 156 G "C2'" C N R 157 G "O2'" O N N 158 G "C1'" C N R 159 G N9 N Y N 160 G C8 C Y N 161 G N7 N Y N 162 G C5 C Y N 163 G C6 C N N 164 G O6 O N N 165 G N1 N N N 166 G C2 C N N 167 G N2 N N N 168 G N3 N N N 169 G C4 C Y N 170 G HOP3 H N N 171 G HOP2 H N N 172 G "H5'" H N N 173 G "H5''" H N N 174 G "H4'" H N N 175 G "H3'" H N N 176 G "HO3'" H N N 177 G "H2'" H N N 178 G "HO2'" H N N 179 G "H1'" H N N 180 G H8 H N N 181 G H1 H N N 182 G H21 H N N 183 G H22 H N N 184 GLU N N N N 185 GLU CA C N S 186 GLU C C N N 187 GLU O O N N 188 GLU CB C N N 189 GLU CG C N N 190 GLU CD C N N 191 GLU OE1 O N N 192 GLU OE2 O N N 193 GLU OXT O N N 194 GLU H H N N 195 GLU H2 H N N 196 GLU HA H N N 197 GLU HB2 H N N 198 GLU HB3 H N N 199 GLU HG2 H N N 200 GLU HG3 H N N 201 GLU HE2 H N N 202 GLU HXT H N N 203 GLY N N N N 204 GLY CA C N N 205 GLY C C N N 206 GLY O O N N 207 GLY OXT O N N 208 GLY H H N N 209 GLY H2 H N N 210 GLY HA2 H N N 211 GLY HA3 H N N 212 GLY HXT H N N 213 GOL C1 C N N 214 GOL O1 O N N 215 GOL C2 C N N 216 GOL O2 O N N 217 GOL C3 C N N 218 GOL O3 O N N 219 GOL H11 H N N 220 GOL H12 H N N 221 GOL HO1 H N N 222 GOL H2 H N N 223 GOL HO2 H N N 224 GOL H31 H N N 225 GOL H32 H N N 226 GOL HO3 H N N 227 GTP PG P N N 228 GTP O1G O N N 229 GTP O2G O N N 230 GTP O3G O N N 231 GTP O3B O N N 232 GTP PB P N N 233 GTP O1B O N N 234 GTP O2B O N N 235 GTP O3A O N N 236 GTP PA P N N 237 GTP O1A O N N 238 GTP O2A O N N 239 GTP "O5'" O N N 240 GTP "C5'" C N N 241 GTP "C4'" C N R 242 GTP "O4'" O N N 243 GTP "C3'" C N S 244 GTP "O3'" O N N 245 GTP "C2'" C N R 246 GTP "O2'" O N N 247 GTP "C1'" C N R 248 GTP N9 N Y N 249 GTP C8 C Y N 250 GTP N7 N Y N 251 GTP C5 C Y N 252 GTP C6 C N N 253 GTP O6 O N N 254 GTP N1 N N N 255 GTP C2 C N N 256 GTP N2 N N N 257 GTP N3 N N N 258 GTP C4 C Y N 259 GTP HOG2 H N N 260 GTP HOG3 H N N 261 GTP HOB2 H N N 262 GTP HOA2 H N N 263 GTP "H5'" H N N 264 GTP "H5''" H N N 265 GTP "H4'" H N N 266 GTP "H3'" H N N 267 GTP "HO3'" H N N 268 GTP "H2'" H N N 269 GTP "HO2'" H N N 270 GTP "H1'" H N N 271 GTP H8 H N N 272 GTP HN1 H N N 273 GTP HN21 H N N 274 GTP HN22 H N N 275 HOH O O N N 276 HOH H1 H N N 277 HOH H2 H N N 278 ILE N N N N 279 ILE CA C N S 280 ILE C C N N 281 ILE O O N N 282 ILE CB C N S 283 ILE CG1 C N N 284 ILE CG2 C N N 285 ILE CD1 C N N 286 ILE OXT O N N 287 ILE H H N N 288 ILE H2 H N N 289 ILE HA H N N 290 ILE HB H N N 291 ILE HG12 H N N 292 ILE HG13 H N N 293 ILE HG21 H N N 294 ILE HG22 H N N 295 ILE HG23 H N N 296 ILE HD11 H N N 297 ILE HD12 H N N 298 ILE HD13 H N N 299 ILE HXT H N N 300 K K K N N 301 LEU N N N N 302 LEU CA C N S 303 LEU C C N N 304 LEU O O N N 305 LEU CB C N N 306 LEU CG C N N 307 LEU CD1 C N N 308 LEU CD2 C N N 309 LEU OXT O N N 310 LEU H H N N 311 LEU H2 H N N 312 LEU HA H N N 313 LEU HB2 H N N 314 LEU HB3 H N N 315 LEU HG H N N 316 LEU HD11 H N N 317 LEU HD12 H N N 318 LEU HD13 H N N 319 LEU HD21 H N N 320 LEU HD22 H N N 321 LEU HD23 H N N 322 LEU HXT H N N 323 LYS N N N N 324 LYS CA C N S 325 LYS C C N N 326 LYS O O N N 327 LYS CB C N N 328 LYS CG C N N 329 LYS CD C N N 330 LYS CE C N N 331 LYS NZ N N N 332 LYS OXT O N N 333 LYS H H N N 334 LYS H2 H N N 335 LYS HA H N N 336 LYS HB2 H N N 337 LYS HB3 H N N 338 LYS HG2 H N N 339 LYS HG3 H N N 340 LYS HD2 H N N 341 LYS HD3 H N N 342 LYS HE2 H N N 343 LYS HE3 H N N 344 LYS HZ1 H N N 345 LYS HZ2 H N N 346 LYS HZ3 H N N 347 LYS HXT H N N 348 MET N N N N 349 MET CA C N S 350 MET C C N N 351 MET O O N N 352 MET CB C N N 353 MET CG C N N 354 MET SD S N N 355 MET CE C N N 356 MET OXT O N N 357 MET H H N N 358 MET H2 H N N 359 MET HA H N N 360 MET HB2 H N N 361 MET HB3 H N N 362 MET HG2 H N N 363 MET HG3 H N N 364 MET HE1 H N N 365 MET HE2 H N N 366 MET HE3 H N N 367 MET HXT H N N 368 MG MG MG N N 369 PHE N N N N 370 PHE CA C N S 371 PHE C C N N 372 PHE O O N N 373 PHE CB C N N 374 PHE CG C Y N 375 PHE CD1 C Y N 376 PHE CD2 C Y N 377 PHE CE1 C Y N 378 PHE CE2 C Y N 379 PHE CZ C Y N 380 PHE OXT O N N 381 PHE H H N N 382 PHE H2 H N N 383 PHE HA H N N 384 PHE HB2 H N N 385 PHE HB3 H N N 386 PHE HD1 H N N 387 PHE HD2 H N N 388 PHE HE1 H N N 389 PHE HE2 H N N 390 PHE HZ H N N 391 PHE HXT H N N 392 PRO N N N N 393 PRO CA C N S 394 PRO C C N N 395 PRO O O N N 396 PRO CB C N N 397 PRO CG C N N 398 PRO CD C N N 399 PRO OXT O N N 400 PRO H H N N 401 PRO HA H N N 402 PRO HB2 H N N 403 PRO HB3 H N N 404 PRO HG2 H N N 405 PRO HG3 H N N 406 PRO HD2 H N N 407 PRO HD3 H N N 408 PRO HXT H N N 409 SER N N N N 410 SER CA C N S 411 SER C C N N 412 SER O O N N 413 SER CB C N N 414 SER OG O N N 415 SER OXT O N N 416 SER H H N N 417 SER H2 H N N 418 SER HA H N N 419 SER HB2 H N N 420 SER HB3 H N N 421 SER HG H N N 422 SER HXT H N N 423 THR N N N N 424 THR CA C N S 425 THR C C N N 426 THR O O N N 427 THR CB C N R 428 THR OG1 O N N 429 THR CG2 C N N 430 THR OXT O N N 431 THR H H N N 432 THR H2 H N N 433 THR HA H N N 434 THR HB H N N 435 THR HG1 H N N 436 THR HG21 H N N 437 THR HG22 H N N 438 THR HG23 H N N 439 THR HXT H N N 440 U OP3 O N N 441 U P P N N 442 U OP1 O N N 443 U OP2 O N N 444 U "O5'" O N N 445 U "C5'" C N N 446 U "C4'" C N R 447 U "O4'" O N N 448 U "C3'" C N S 449 U "O3'" O N N 450 U "C2'" C N R 451 U "O2'" O N N 452 U "C1'" C N R 453 U N1 N N N 454 U C2 C N N 455 U O2 O N N 456 U N3 N N N 457 U C4 C N N 458 U O4 O N N 459 U C5 C N N 460 U C6 C N N 461 U HOP3 H N N 462 U HOP2 H N N 463 U "H5'" H N N 464 U "H5''" H N N 465 U "H4'" H N N 466 U "H3'" H N N 467 U "HO3'" H N N 468 U "H2'" H N N 469 U "HO2'" H N N 470 U "H1'" H N N 471 U H3 H N N 472 U H5 H N N 473 U H6 H N N 474 VAL N N N N 475 VAL CA C N S 476 VAL C C N N 477 VAL O O N N 478 VAL CB C N N 479 VAL CG1 C N N 480 VAL CG2 C N N 481 VAL OXT O N N 482 VAL H H N N 483 VAL H2 H N N 484 VAL HA H N N 485 VAL HB H N N 486 VAL HG11 H N N 487 VAL HG12 H N N 488 VAL HG13 H N N 489 VAL HG21 H N N 490 VAL HG22 H N N 491 VAL HG23 H N N 492 VAL HXT H N N 493 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLU N CA sing N N 185 GLU N H sing N N 186 GLU N H2 sing N N 187 GLU CA C sing N N 188 GLU CA CB sing N N 189 GLU CA HA sing N N 190 GLU C O doub N N 191 GLU C OXT sing N N 192 GLU CB CG sing N N 193 GLU CB HB2 sing N N 194 GLU CB HB3 sing N N 195 GLU CG CD sing N N 196 GLU CG HG2 sing N N 197 GLU CG HG3 sing N N 198 GLU CD OE1 doub N N 199 GLU CD OE2 sing N N 200 GLU OE2 HE2 sing N N 201 GLU OXT HXT sing N N 202 GLY N CA sing N N 203 GLY N H sing N N 204 GLY N H2 sing N N 205 GLY CA C sing N N 206 GLY CA HA2 sing N N 207 GLY CA HA3 sing N N 208 GLY C O doub N N 209 GLY C OXT sing N N 210 GLY OXT HXT sing N N 211 GOL C1 O1 sing N N 212 GOL C1 C2 sing N N 213 GOL C1 H11 sing N N 214 GOL C1 H12 sing N N 215 GOL O1 HO1 sing N N 216 GOL C2 O2 sing N N 217 GOL C2 C3 sing N N 218 GOL C2 H2 sing N N 219 GOL O2 HO2 sing N N 220 GOL C3 O3 sing N N 221 GOL C3 H31 sing N N 222 GOL C3 H32 sing N N 223 GOL O3 HO3 sing N N 224 GTP PG O1G doub N N 225 GTP PG O2G sing N N 226 GTP PG O3G sing N N 227 GTP PG O3B sing N N 228 GTP O2G HOG2 sing N N 229 GTP O3G HOG3 sing N N 230 GTP O3B PB sing N N 231 GTP PB O1B doub N N 232 GTP PB O2B sing N N 233 GTP PB O3A sing N N 234 GTP O2B HOB2 sing N N 235 GTP O3A PA sing N N 236 GTP PA O1A doub N N 237 GTP PA O2A sing N N 238 GTP PA "O5'" sing N N 239 GTP O2A HOA2 sing N N 240 GTP "O5'" "C5'" sing N N 241 GTP "C5'" "C4'" sing N N 242 GTP "C5'" "H5'" sing N N 243 GTP "C5'" "H5''" sing N N 244 GTP "C4'" "O4'" sing N N 245 GTP "C4'" "C3'" sing N N 246 GTP "C4'" "H4'" sing N N 247 GTP "O4'" "C1'" sing N N 248 GTP "C3'" "O3'" sing N N 249 GTP "C3'" "C2'" sing N N 250 GTP "C3'" "H3'" sing N N 251 GTP "O3'" "HO3'" sing N N 252 GTP "C2'" "O2'" sing N N 253 GTP "C2'" "C1'" sing N N 254 GTP "C2'" "H2'" sing N N 255 GTP "O2'" "HO2'" sing N N 256 GTP "C1'" N9 sing N N 257 GTP "C1'" "H1'" sing N N 258 GTP N9 C8 sing Y N 259 GTP N9 C4 sing Y N 260 GTP C8 N7 doub Y N 261 GTP C8 H8 sing N N 262 GTP N7 C5 sing Y N 263 GTP C5 C6 sing N N 264 GTP C5 C4 doub Y N 265 GTP C6 O6 doub N N 266 GTP C6 N1 sing N N 267 GTP N1 C2 sing N N 268 GTP N1 HN1 sing N N 269 GTP C2 N2 sing N N 270 GTP C2 N3 doub N N 271 GTP N2 HN21 sing N N 272 GTP N2 HN22 sing N N 273 GTP N3 C4 sing N N 274 HOH O H1 sing N N 275 HOH O H2 sing N N 276 ILE N CA sing N N 277 ILE N H sing N N 278 ILE N H2 sing N N 279 ILE CA C sing N N 280 ILE CA CB sing N N 281 ILE CA HA sing N N 282 ILE C O doub N N 283 ILE C OXT sing N N 284 ILE CB CG1 sing N N 285 ILE CB CG2 sing N N 286 ILE CB HB sing N N 287 ILE CG1 CD1 sing N N 288 ILE CG1 HG12 sing N N 289 ILE CG1 HG13 sing N N 290 ILE CG2 HG21 sing N N 291 ILE CG2 HG22 sing N N 292 ILE CG2 HG23 sing N N 293 ILE CD1 HD11 sing N N 294 ILE CD1 HD12 sing N N 295 ILE CD1 HD13 sing N N 296 ILE OXT HXT sing N N 297 LEU N CA sing N N 298 LEU N H sing N N 299 LEU N H2 sing N N 300 LEU CA C sing N N 301 LEU CA CB sing N N 302 LEU CA HA sing N N 303 LEU C O doub N N 304 LEU C OXT sing N N 305 LEU CB CG sing N N 306 LEU CB HB2 sing N N 307 LEU CB HB3 sing N N 308 LEU CG CD1 sing N N 309 LEU CG CD2 sing N N 310 LEU CG HG sing N N 311 LEU CD1 HD11 sing N N 312 LEU CD1 HD12 sing N N 313 LEU CD1 HD13 sing N N 314 LEU CD2 HD21 sing N N 315 LEU CD2 HD22 sing N N 316 LEU CD2 HD23 sing N N 317 LEU OXT HXT sing N N 318 LYS N CA sing N N 319 LYS N H sing N N 320 LYS N H2 sing N N 321 LYS CA C sing N N 322 LYS CA CB sing N N 323 LYS CA HA sing N N 324 LYS C O doub N N 325 LYS C OXT sing N N 326 LYS CB CG sing N N 327 LYS CB HB2 sing N N 328 LYS CB HB3 sing N N 329 LYS CG CD sing N N 330 LYS CG HG2 sing N N 331 LYS CG HG3 sing N N 332 LYS CD CE sing N N 333 LYS CD HD2 sing N N 334 LYS CD HD3 sing N N 335 LYS CE NZ sing N N 336 LYS CE HE2 sing N N 337 LYS CE HE3 sing N N 338 LYS NZ HZ1 sing N N 339 LYS NZ HZ2 sing N N 340 LYS NZ HZ3 sing N N 341 LYS OXT HXT sing N N 342 MET N CA sing N N 343 MET N H sing N N 344 MET N H2 sing N N 345 MET CA C sing N N 346 MET CA CB sing N N 347 MET CA HA sing N N 348 MET C O doub N N 349 MET C OXT sing N N 350 MET CB CG sing N N 351 MET CB HB2 sing N N 352 MET CB HB3 sing N N 353 MET CG SD sing N N 354 MET CG HG2 sing N N 355 MET CG HG3 sing N N 356 MET SD CE sing N N 357 MET CE HE1 sing N N 358 MET CE HE2 sing N N 359 MET CE HE3 sing N N 360 MET OXT HXT sing N N 361 PHE N CA sing N N 362 PHE N H sing N N 363 PHE N H2 sing N N 364 PHE CA C sing N N 365 PHE CA CB sing N N 366 PHE CA HA sing N N 367 PHE C O doub N N 368 PHE C OXT sing N N 369 PHE CB CG sing N N 370 PHE CB HB2 sing N N 371 PHE CB HB3 sing N N 372 PHE CG CD1 doub Y N 373 PHE CG CD2 sing Y N 374 PHE CD1 CE1 sing Y N 375 PHE CD1 HD1 sing N N 376 PHE CD2 CE2 doub Y N 377 PHE CD2 HD2 sing N N 378 PHE CE1 CZ doub Y N 379 PHE CE1 HE1 sing N N 380 PHE CE2 CZ sing Y N 381 PHE CE2 HE2 sing N N 382 PHE CZ HZ sing N N 383 PHE OXT HXT sing N N 384 PRO N CA sing N N 385 PRO N CD sing N N 386 PRO N H sing N N 387 PRO CA C sing N N 388 PRO CA CB sing N N 389 PRO CA HA sing N N 390 PRO C O doub N N 391 PRO C OXT sing N N 392 PRO CB CG sing N N 393 PRO CB HB2 sing N N 394 PRO CB HB3 sing N N 395 PRO CG CD sing N N 396 PRO CG HG2 sing N N 397 PRO CG HG3 sing N N 398 PRO CD HD2 sing N N 399 PRO CD HD3 sing N N 400 PRO OXT HXT sing N N 401 SER N CA sing N N 402 SER N H sing N N 403 SER N H2 sing N N 404 SER CA C sing N N 405 SER CA CB sing N N 406 SER CA HA sing N N 407 SER C O doub N N 408 SER C OXT sing N N 409 SER CB OG sing N N 410 SER CB HB2 sing N N 411 SER CB HB3 sing N N 412 SER OG HG sing N N 413 SER OXT HXT sing N N 414 THR N CA sing N N 415 THR N H sing N N 416 THR N H2 sing N N 417 THR CA C sing N N 418 THR CA CB sing N N 419 THR CA HA sing N N 420 THR C O doub N N 421 THR C OXT sing N N 422 THR CB OG1 sing N N 423 THR CB CG2 sing N N 424 THR CB HB sing N N 425 THR OG1 HG1 sing N N 426 THR CG2 HG21 sing N N 427 THR CG2 HG22 sing N N 428 THR CG2 HG23 sing N N 429 THR OXT HXT sing N N 430 U OP3 P sing N N 431 U OP3 HOP3 sing N N 432 U P OP1 doub N N 433 U P OP2 sing N N 434 U P "O5'" sing N N 435 U OP2 HOP2 sing N N 436 U "O5'" "C5'" sing N N 437 U "C5'" "C4'" sing N N 438 U "C5'" "H5'" sing N N 439 U "C5'" "H5''" sing N N 440 U "C4'" "O4'" sing N N 441 U "C4'" "C3'" sing N N 442 U "C4'" "H4'" sing N N 443 U "O4'" "C1'" sing N N 444 U "C3'" "O3'" sing N N 445 U "C3'" "C2'" sing N N 446 U "C3'" "H3'" sing N N 447 U "O3'" "HO3'" sing N N 448 U "C2'" "O2'" sing N N 449 U "C2'" "C1'" sing N N 450 U "C2'" "H2'" sing N N 451 U "O2'" "HO2'" sing N N 452 U "C1'" N1 sing N N 453 U "C1'" "H1'" sing N N 454 U N1 C2 sing N N 455 U N1 C6 sing N N 456 U C2 O2 doub N N 457 U C2 N3 sing N N 458 U N3 C4 sing N N 459 U N3 H3 sing N N 460 U C4 O4 doub N N 461 U C4 C5 sing N N 462 U C5 C6 doub N N 463 U C5 H5 sing N N 464 U C6 H6 sing N N 465 VAL N CA sing N N 466 VAL N H sing N N 467 VAL N H2 sing N N 468 VAL CA C sing N N 469 VAL CA CB sing N N 470 VAL CA HA sing N N 471 VAL C O doub N N 472 VAL C OXT sing N N 473 VAL CB CG1 sing N N 474 VAL CB CG2 sing N N 475 VAL CB HB sing N N 476 VAL CG1 HG11 sing N N 477 VAL CG1 HG12 sing N N 478 VAL CG1 HG13 sing N N 479 VAL CG2 HG21 sing N N 480 VAL CG2 HG22 sing N N 481 VAL CG2 HG23 sing N N 482 VAL OXT HXT sing N N 483 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1Y39 'double helix' 1Y39 'a-form double helix' 1Y39 'hairpin loop' 1Y39 'bulge loop' 1Y39 'mismatched base pair' 1Y39 'internal loop' 1Y39 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 A U 58 1_555 -1.700 -0.551 0.091 -3.652 -6.133 -5.006 1 C_GTP101:U158_C C 101 ? C 158 ? 28 1 1 A C 2 1_555 A G 57 1_555 -0.282 -0.058 0.530 0.514 -17.264 4.384 2 C_C102:G157_C C 102 ? C 157 ? 19 1 1 A C 3 1_555 A G 56 1_555 0.183 0.106 -0.005 -2.823 -4.162 8.271 3 C_C103:G156_C C 103 ? C 156 ? 19 1 1 A A 4 1_555 A U 55 1_555 0.477 -0.118 0.491 -0.644 -7.914 5.383 4 C_A104:U155_C C 104 ? C 155 ? 20 1 1 A G 5 1_555 A C 54 1_555 -0.212 -0.130 -0.110 -6.970 -15.958 1.177 5 C_G105:C154_C C 105 ? C 154 ? 19 1 1 A G 6 1_555 A A 53 1_555 6.758 -4.303 0.005 -14.936 -8.959 -6.967 6 C_G106:A153_C C 106 ? C 153 ? 11 10 1 A G 37 1_555 A C 52 1_555 0.170 -0.167 -0.227 -5.298 -1.219 0.769 7 C_G137:C152_C C 137 ? C 152 ? 19 1 1 A U 40 1_555 A U 51 1_555 -2.609 -1.971 0.248 -6.327 -7.667 16.297 8 C_U140:U151_C C 140 ? C 151 ? 16 1 1 A G 41 1_555 A C 50 1_555 -0.703 -0.074 -0.438 -7.974 -5.756 7.888 9 C_G141:C150_C C 141 ? C 150 ? 19 1 1 A C 42 1_555 A G 49 1_555 0.409 -0.454 -0.512 7.709 -1.233 -2.862 10 C_C142:G149_C C 142 ? C 149 ? 19 1 1 A G 43 1_555 A A 48 1_555 6.682 -4.399 -0.383 -6.275 0.404 -4.813 11 C_G143:A148_C C 143 ? C 148 ? 11 10 1 A A 36 1_555 A U 32 1_555 0.274 0.917 -0.117 8.476 -11.554 174.285 12 C_A136:U132_C C 136 ? C 132 ? 21 2 1 A A 7 1_555 A U 31 1_555 0.142 -0.139 0.049 8.983 -19.807 -1.042 13 C_A107:U131_C C 107 ? C 131 ? 20 1 1 A U 8 1_555 A A 30 1_555 0.547 0.136 0.033 -11.833 -9.880 21.437 14 C_U108:A130_C C 108 ? C 130 ? ? 1 1 A G 9 1_555 A C 29 1_555 -0.397 -0.239 0.169 -2.021 -0.235 -2.415 15 C_G109:C129_C C 109 ? C 129 ? 19 1 1 A U 10 1_555 A A 38 1_555 -0.486 3.769 0.594 -6.199 4.098 -64.682 16 C_U110:A138_C C 110 ? C 138 ? 23 3 1 A U 12 1_555 A A 26 1_555 -0.951 0.314 0.201 5.569 -7.471 -18.587 17 C_U112:A126_C C 112 ? C 126 ? 20 1 1 A G 13 1_555 A C 25 1_555 -0.192 -0.184 0.186 -1.903 -15.820 3.657 18 C_G113:C125_C C 113 ? C 125 ? 19 1 1 A C 14 1_555 A G 24 1_555 -0.004 0.075 0.162 0.437 -18.627 8.684 19 C_C114:G124_C C 114 ? C 124 ? 19 1 1 A U 15 1_555 A A 23 1_555 5.304 -1.198 0.196 -17.599 -12.099 -1.021 20 C_U115:A123_C C 115 ? C 123 ? ? ? 1 B GTP 1 1_555 B U 58 1_555 -2.445 -0.596 -0.122 -6.971 -9.146 5.590 21 D_GTP301:U358_D D 301 ? D 358 ? 28 1 1 B C 2 1_555 B G 57 1_555 0.148 -0.216 0.120 -0.453 -15.567 1.748 22 D_C302:G357_D D 302 ? D 357 ? 19 1 1 B C 3 1_555 B G 56 1_555 0.155 0.009 -0.335 2.125 -20.354 4.190 23 D_C303:G356_D D 303 ? D 356 ? 19 1 1 B A 4 1_555 B U 55 1_555 0.198 0.063 0.006 -8.180 -7.357 4.719 24 D_A304:U355_D D 304 ? D 355 ? 20 1 1 B G 5 1_555 B C 54 1_555 -0.126 -0.014 -0.031 -4.015 -9.379 5.928 25 D_G305:C354_D D 305 ? D 354 ? 19 1 1 B G 6 1_555 B A 53 1_555 6.645 -4.258 0.305 -22.887 -13.935 -5.466 26 D_G306:A353_D D 306 ? D 353 ? 11 10 1 B G 37 1_555 B C 52 1_555 -0.094 -0.101 -0.295 -0.528 0.366 6.412 27 D_G337:C352_D D 337 ? D 352 ? 19 1 1 B U 40 1_555 B U 51 1_555 -2.608 -1.922 -0.294 -17.150 -9.257 10.987 28 D_U340:U351_D D 340 ? D 351 ? 16 1 1 B G 41 1_555 B C 50 1_555 0.034 -0.310 -0.524 -2.118 2.379 -1.707 29 D_G341:C350_D D 341 ? D 350 ? 19 1 1 B C 42 1_555 B G 49 1_555 0.201 -0.389 -0.169 0.758 6.131 -1.973 30 D_C342:G349_D D 342 ? D 349 ? 19 1 1 B G 43 1_555 B A 48 1_555 6.721 -4.193 0.102 -3.841 -3.957 -5.439 31 D_G343:A348_D D 343 ? D 348 ? 11 10 1 B A 36 1_555 B U 32 1_555 0.307 1.115 -0.270 13.567 -5.903 177.815 32 D_A336:U332_D D 336 ? D 332 ? 21 2 1 B A 7 1_555 B U 31 1_555 0.467 -0.041 0.330 3.612 -14.595 -4.123 33 D_A307:U331_D D 307 ? D 331 ? 20 1 1 B U 8 1_555 B A 30 1_555 -0.330 -0.039 0.298 -8.620 -12.028 10.410 34 D_U308:A330_D D 308 ? D 330 ? 20 1 1 B G 9 1_555 B C 29 1_555 0.261 -0.161 0.248 -2.923 -5.690 -6.577 35 D_G309:C329_D D 309 ? D 329 ? 19 1 1 B U 10 1_555 B A 38 1_555 -0.854 3.898 0.874 -8.524 3.804 -65.991 36 D_U310:A338_D D 310 ? D 338 ? 23 3 1 B U 12 1_555 B A 26 1_555 -0.215 0.366 -0.222 8.139 -14.150 -11.268 37 D_U312:A326_D D 312 ? D 326 ? 20 1 1 B G 13 1_555 B C 25 1_555 -0.278 -0.118 0.841 4.842 -15.998 3.535 38 D_G313:C325_D D 313 ? D 325 ? 19 1 1 B C 14 1_555 B G 24 1_555 0.084 -0.114 0.238 -6.816 -21.031 5.824 39 D_C314:G324_D D 314 ? D 324 ? 19 1 1 B U 15 1_555 B A 23 1_555 5.655 -1.386 -0.481 -8.680 -9.186 6.535 40 D_U315:A323_D D 315 ? D 323 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 A U 58 1_555 A C 2 1_555 A G 57 1_555 0.175 -1.228 3.039 -3.879 7.175 40.202 -2.455 -0.630 2.761 10.310 5.574 40.988 1 CC_GTP101C102:G157U158_CC C 101 ? C 158 ? C 102 ? C 157 ? 1 A C 2 1_555 A G 57 1_555 A C 3 1_555 A G 56 1_555 -0.203 -1.845 3.123 0.569 7.312 34.005 -4.089 0.418 2.677 12.325 -0.960 34.764 2 CC_C102C103:G156G157_CC C 102 ? C 157 ? C 103 ? C 156 ? 1 A C 3 1_555 A G 56 1_555 A A 4 1_555 A U 55 1_555 0.497 -1.621 3.180 -1.564 3.133 29.634 -3.764 -1.272 2.967 6.099 3.045 29.835 3 CC_C103A104:U155G156_CC C 103 ? C 156 ? C 104 ? C 155 ? 1 A A 4 1_555 A U 55 1_555 A G 5 1_555 A C 54 1_555 0.285 -2.219 3.370 5.714 10.980 26.969 -6.456 0.544 2.321 22.123 -11.514 29.625 4 CC_A104G105:C154U155_CC C 104 ? C 155 ? C 105 ? C 154 ? 1 A G 5 1_555 A C 54 1_555 A G 6 1_555 A A 53 1_555 -0.437 -0.956 3.647 5.977 13.753 68.013 -1.381 0.619 3.381 12.145 -5.278 69.452 5 CC_G105G106:A153C154_CC C 105 ? C 154 ? C 106 ? C 153 ? 1 A G 6 1_555 A A 53 1_555 A G 37 1_555 A C 52 1_555 -3.204 1.341 3.246 8.855 1.273 43.281 1.676 5.013 2.610 1.705 -11.855 44.152 6 CC_G106G137:C152A153_CC C 106 ? C 153 ? C 137 ? C 152 ? 1 A G 37 1_555 A C 52 1_555 A U 40 1_555 A U 51 1_555 -0.691 -3.268 3.469 -0.794 -4.332 34.784 -4.696 1.013 3.850 -7.210 1.322 35.053 7 CC_G137U140:U151C152_CC C 137 ? C 152 ? C 140 ? C 151 ? 1 A U 40 1_555 A U 51 1_555 A G 41 1_555 A C 50 1_555 -1.046 -1.646 3.308 3.432 6.620 30.957 -4.144 2.500 2.777 12.181 -6.316 31.821 8 CC_U140G141:C150U151_CC C 140 ? C 151 ? C 141 ? C 150 ? 1 A G 41 1_555 A C 50 1_555 A C 42 1_555 A G 49 1_555 -0.239 -2.072 3.015 -1.434 -1.367 34.796 -3.266 0.195 3.098 -2.284 2.395 34.851 9 CC_G141C142:G149C150_CC C 141 ? C 150 ? C 142 ? C 149 ? 1 A C 42 1_555 A G 49 1_555 A G 43 1_555 A A 48 1_555 -0.109 -1.689 3.766 3.486 2.941 55.984 -1.985 0.341 3.668 3.127 -3.707 56.155 10 CC_C142G143:A148G149_CC C 142 ? C 149 ? C 143 ? C 148 ? 1 A A 36 1_555 A U 32 1_555 A A 7 1_555 A U 31 1_555 -2.464 -2.607 1.133 87.572 -148.057 132.941 -1.075 1.368 1.433 -74.313 -43.954 176.815 11 CC_A136A107:U131U132_CC C 136 ? C 132 ? C 107 ? C 131 ? 1 A A 7 1_555 A U 31 1_555 A U 8 1_555 A A 30 1_555 0.507 -1.787 3.630 -2.172 5.789 38.842 -3.390 -1.029 3.309 8.638 3.241 39.312 12 CC_A107U108:A130U131_CC C 107 ? C 131 ? C 108 ? C 130 ? 1 A U 8 1_555 A A 30 1_555 A G 9 1_555 A C 29 1_555 -2.018 -1.931 3.049 0.084 5.344 26.802 -5.250 4.291 2.615 11.385 -0.179 27.320 13 CC_U108G109:C129A130_CC C 108 ? C 130 ? C 109 ? C 129 ? 1 A G 9 1_555 A C 29 1_555 A U 10 1_555 A A 38 1_555 2.993 -0.690 -2.195 -27.326 -169.847 -173.232 0.281 1.507 -2.203 84.930 -13.664 -179.530 14 CC_G109U110:A138C129_CC C 109 ? C 129 ? C 110 ? C 138 ? 1 A U 12 1_555 A A 26 1_555 A G 13 1_555 A C 25 1_555 0.892 -1.596 3.232 -3.302 8.265 39.044 -3.213 -1.656 2.770 12.175 4.864 40.007 15 CC_U112G113:C125A126_CC C 112 ? C 126 ? C 113 ? C 125 ? 1 A G 13 1_555 A C 25 1_555 A C 14 1_555 A G 24 1_555 1.161 -2.051 3.144 5.651 -1.265 32.934 -3.356 -1.081 3.365 -2.210 -9.872 33.426 16 CC_G113C114:G124C125_CC C 113 ? C 125 ? C 114 ? C 124 ? 1 A C 14 1_555 A G 24 1_555 A U 15 1_555 A A 23 1_555 0.171 -0.911 3.640 6.599 7.663 53.136 -1.523 0.259 3.484 8.479 -7.302 54.021 17 CC_C114U115:A123G124_CC C 114 ? C 124 ? C 115 ? C 123 ? 1 B GTP 1 1_555 B U 58 1_555 B C 2 1_555 B G 57 1_555 -0.169 -1.064 3.162 -4.895 7.638 43.624 -2.069 -0.202 2.946 10.147 6.503 44.513 18 DD_GTP301C302:G357U358_DD D 301 ? D 358 ? D 302 ? D 357 ? 1 B C 2 1_555 B G 57 1_555 B C 3 1_555 B G 56 1_555 -0.115 -1.617 3.145 4.265 7.722 32.452 -3.940 0.831 2.665 13.508 -7.461 33.599 19 DD_C302C303:G356G357_DD D 302 ? D 357 ? D 303 ? D 356 ? 1 B C 3 1_555 B G 56 1_555 B A 4 1_555 B U 55 1_555 0.432 -1.614 3.437 -1.444 11.358 29.161 -5.054 -1.063 2.616 21.541 2.738 31.283 20 DD_C303A304:U355G356_DD D 303 ? D 356 ? D 304 ? D 355 ? 1 B A 4 1_555 B U 55 1_555 B G 5 1_555 B C 54 1_555 0.962 -1.934 3.115 1.369 8.057 25.956 -5.880 -1.745 2.460 17.396 -2.957 27.191 21 DD_A304G305:C354U355_DD D 304 ? D 355 ? D 305 ? D 354 ? 1 B G 5 1_555 B C 54 1_555 B G 6 1_555 B A 53 1_555 -0.637 -0.953 3.877 6.481 18.153 69.863 -1.508 0.790 3.511 15.557 -5.555 72.147 22 DD_G305G306:A353C354_DD D 305 ? D 354 ? D 306 ? D 353 ? 1 B G 6 1_555 B A 53 1_555 B G 37 1_555 B C 52 1_555 -3.337 1.407 2.795 9.962 -0.824 42.396 1.957 5.213 1.973 -1.120 -13.550 43.506 23 DD_G306G337:C352A353_DD D 306 ? D 353 ? D 337 ? D 352 ? 1 B G 37 1_555 B C 52 1_555 B U 40 1_555 B U 51 1_555 -0.800 -3.723 3.792 2.862 4.112 34.556 -6.882 1.803 3.266 6.877 -4.786 34.906 24 DD_G337U340:U351C352_DD D 337 ? D 352 ? D 340 ? D 351 ? 1 B U 40 1_555 B U 51 1_555 B G 41 1_555 B C 50 1_555 -1.260 -1.526 2.915 1.197 2.968 37.705 -2.684 2.076 2.751 4.582 -1.848 37.836 25 DD_U340G341:C350U351_DD D 340 ? D 351 ? D 341 ? D 350 ? 1 B G 41 1_555 B C 50 1_555 B C 42 1_555 B G 49 1_555 0.223 -2.539 3.286 -3.622 2.999 28.678 -5.694 -1.209 2.961 6.004 7.250 29.053 26 DD_G341C342:G349C350_DD D 341 ? D 350 ? D 342 ? D 349 ? 1 B C 42 1_555 B G 49 1_555 B G 43 1_555 B A 48 1_555 -0.074 -1.504 3.458 4.123 4.089 58.955 -1.738 0.294 3.345 4.143 -4.178 59.215 27 DD_C342G343:A348G349_DD D 342 ? D 349 ? D 343 ? D 348 ? 1 B A 36 1_555 B U 32 1_555 B A 7 1_555 B U 31 1_555 -2.631 -1.930 1.836 81.118 -149.414 173.397 -0.918 1.341 1.858 -74.714 -40.563 179.426 28 DD_A336A307:U331U332_DD D 336 ? D 332 ? D 307 ? D 331 ? 1 B A 7 1_555 B U 31 1_555 B U 8 1_555 B A 30 1_555 -0.276 -2.653 3.297 -4.060 7.799 28.450 -6.652 -0.235 2.512 15.411 8.022 29.751 29 DD_A307U308:A330U331_DD D 307 ? D 331 ? D 308 ? D 330 ? 1 B U 8 1_555 B A 30 1_555 B G 9 1_555 B C 29 1_555 -1.487 -2.026 2.988 -0.194 8.239 33.368 -4.518 2.494 2.441 14.084 0.332 34.342 30 DD_U308G309:C329A330_DD D 308 ? D 330 ? D 309 ? D 329 ? 1 B G 9 1_555 B C 29 1_555 B U 10 1_555 B A 38 1_555 -3.125 -0.379 -2.075 23.120 167.203 147.972 0.108 1.522 -2.216 83.815 -11.590 176.913 31 DD_G309U310:A338C329_DD D 309 ? D 329 ? D 310 ? D 338 ? 1 B U 12 1_555 B A 26 1_555 B G 13 1_555 B C 25 1_555 0.698 -1.688 3.186 -11.931 5.730 36.197 -3.207 -2.403 2.553 8.866 18.460 38.464 32 DD_U312G313:C325A326_DD D 312 ? D 326 ? D 313 ? D 325 ? 1 B G 13 1_555 B C 25 1_555 B C 14 1_555 B G 24 1_555 0.996 -2.197 3.374 7.177 -0.819 33.601 -3.583 -0.483 3.556 -1.397 -12.239 34.347 33 DD_G313C314:G324C325_DD D 313 ? D 325 ? D 314 ? D 324 ? 1 B C 14 1_555 B G 24 1_555 B U 15 1_555 B A 23 1_555 0.239 -0.750 3.296 12.886 6.017 54.872 -1.132 0.477 3.183 6.409 -13.727 56.546 34 DD_C314U315:A323G324_DD D 314 ? D 324 ? D 315 ? D 323 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'COBALT (III) ION' 3CO 4 'POTASSIUM ION' K 5 'MAGNESIUM ION' MG 6 GLYCEROL GOL 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1HC8 _pdbx_initial_refinement_model.details 'PDB ENTRY 1HC8' #