data_1YAL # _entry.id 1YAL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YAL pdb_00001yal 10.2210/pdb1yal/pdb WWPDB D_1000177353 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YAL _pdbx_database_status.recvd_initial_deposition_date 1996-06-20 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Maes, D.' 1 'Bouckaert, J.' 2 'Poortmans, F.' 3 'Wyns, L.' 4 'Looze, Y.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of chymopapain at 1.7 A resolution.' Biochemistry 35 16292 16298 1996 BICHAW US 0006-2960 0033 ? 8973203 10.1021/bi961491w 1 'Preparation of Crystals of Chymopapain Diffracting to 1.4 Angstroms Resolution' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Maes, D.' 1 ? primary 'Bouckaert, J.' 2 ? primary 'Poortmans, F.' 3 ? primary 'Wyns, L.' 4 ? primary 'Looze, Y.' 5 ? 1 'Azarkan, M.' 6 ? 1 'Maes, D.' 7 ? 1 'Bouckaert, J.' 8 ? 1 'Thi, M.-H.D.' 9 ? 1 'Wyns, L.' 10 ? 1 'Looze, Y.' 11 ? # _cell.entry_id 1YAL _cell.length_a 145.180 _cell.length_b 32.350 _cell.length_c 47.420 _cell.angle_alpha 90.00 _cell.angle_beta 98.37 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YAL _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat CHYMOPAPAIN 23777.971 1 3.4.22.6 ? ? 'THE ACTIVE SITE CYS 25 AS WELL AS CYS 117 ARE PROTECTED WITH A THIOMETHYL GROUP' 2 water nat water 18.015 222 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;YPQSIDWRAKGAVTPVKNQGACGS(SCH)WAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVA NNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSN(SCH)ETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGP CGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFKGFA ; _entity_poly.pdbx_seq_one_letter_code_can ;YPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGV HTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHA VTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFKGFA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 PRO n 1 3 GLN n 1 4 SER n 1 5 ILE n 1 6 ASP n 1 7 TRP n 1 8 ARG n 1 9 ALA n 1 10 LYS n 1 11 GLY n 1 12 ALA n 1 13 VAL n 1 14 THR n 1 15 PRO n 1 16 VAL n 1 17 LYS n 1 18 ASN n 1 19 GLN n 1 20 GLY n 1 21 ALA n 1 22 CYS n 1 23 GLY n 1 24 SER n 1 25 SCH n 1 26 TRP n 1 27 ALA n 1 28 PHE n 1 29 SER n 1 30 THR n 1 31 ILE n 1 32 ALA n 1 33 THR n 1 34 VAL n 1 35 GLU n 1 36 GLY n 1 37 ILE n 1 38 ASN n 1 39 LYS n 1 40 ILE n 1 41 VAL n 1 42 THR n 1 43 GLY n 1 44 ASN n 1 45 LEU n 1 46 LEU n 1 47 GLU n 1 48 LEU n 1 49 SER n 1 50 GLU n 1 51 GLN n 1 52 GLU n 1 53 LEU n 1 54 VAL n 1 55 ASP n 1 56 CYS n 1 57 ASP n 1 58 LYS n 1 59 HIS n 1 60 SER n 1 61 TYR n 1 62 GLY n 1 63 CYS n 1 64 LYS n 1 65 GLY n 1 66 GLY n 1 67 TYR n 1 68 GLN n 1 69 THR n 1 70 THR n 1 71 SER n 1 72 LEU n 1 73 GLN n 1 74 TYR n 1 75 VAL n 1 76 ALA n 1 77 ASN n 1 78 ASN n 1 79 GLY n 1 80 VAL n 1 81 HIS n 1 82 THR n 1 83 SER n 1 84 LYS n 1 85 VAL n 1 86 TYR n 1 87 PRO n 1 88 TYR n 1 89 GLN n 1 90 ALA n 1 91 LYS n 1 92 GLN n 1 93 TYR n 1 94 LYS n 1 95 CYS n 1 96 ARG n 1 97 ALA n 1 98 THR n 1 99 ASP n 1 100 LYS n 1 101 PRO n 1 102 GLY n 1 103 PRO n 1 104 LYS n 1 105 VAL n 1 106 LYS n 1 107 ILE n 1 108 THR n 1 109 GLY n 1 110 TYR n 1 111 LYS n 1 112 ARG n 1 113 VAL n 1 114 PRO n 1 115 SER n 1 116 ASN n 1 117 SCH n 1 118 GLU n 1 119 THR n 1 120 SER n 1 121 PHE n 1 122 LEU n 1 123 GLY n 1 124 ALA n 1 125 LEU n 1 126 ALA n 1 127 ASN n 1 128 GLN n 1 129 PRO n 1 130 LEU n 1 131 SER n 1 132 VAL n 1 133 LEU n 1 134 VAL n 1 135 GLU n 1 136 ALA n 1 137 GLY n 1 138 GLY n 1 139 LYS n 1 140 PRO n 1 141 PHE n 1 142 GLN n 1 143 LEU n 1 144 TYR n 1 145 LYS n 1 146 SER n 1 147 GLY n 1 148 VAL n 1 149 PHE n 1 150 ASP n 1 151 GLY n 1 152 PRO n 1 153 CYS n 1 154 GLY n 1 155 THR n 1 156 LYS n 1 157 LEU n 1 158 ASP n 1 159 HIS n 1 160 ALA n 1 161 VAL n 1 162 THR n 1 163 ALA n 1 164 VAL n 1 165 GLY n 1 166 TYR n 1 167 GLY n 1 168 THR n 1 169 SER n 1 170 ASP n 1 171 GLY n 1 172 LYS n 1 173 ASN n 1 174 TYR n 1 175 ILE n 1 176 ILE n 1 177 ILE n 1 178 LYS n 1 179 ASN n 1 180 SER n 1 181 TRP n 1 182 GLY n 1 183 PRO n 1 184 ASN n 1 185 TRP n 1 186 GLY n 1 187 GLU n 1 188 LYS n 1 189 GLY n 1 190 TYR n 1 191 MET n 1 192 ARG n 1 193 LEU n 1 194 LYS n 1 195 ARG n 1 196 GLN n 1 197 SER n 1 198 GLY n 1 199 ASN n 1 200 SER n 1 201 GLN n 1 202 GLY n 1 203 THR n 1 204 CYS n 1 205 GLY n 1 206 VAL n 1 207 TYR n 1 208 LYS n 1 209 SER n 1 210 SER n 1 211 TYR n 1 212 TYR n 1 213 PRO n 1 214 PHE n 1 215 LYS n 1 216 GLY n 1 217 PHE n 1 218 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name papaya _entity_src_nat.pdbx_organism_scientific 'Carica papaya' _entity_src_nat.pdbx_ncbi_taxonomy_id 3649 _entity_src_nat.genus Carica _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ FRUIT _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PAPA2_CARPA _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P14080 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MATMSSISKIIFLATCLIIHMGLSSADFYTVGYSQDDLTSIERLIQLFDSWMLKHNKIYESIDEKIYRFEIFRDNLMYID ETNKKNNSYWLGLNGFADLSNDEFKKKYVGFVAEDFTGLEHFDNEDFTYKHVTNYPQSIDWRAKGAVTPVKNQGACGSCW AFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSKVYPYQAKQYKCRATDKPGPKVK ITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWG EKGYMRLKRQSGNSQGTCGVYKSSYYPFKGFA ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YAL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 218 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P14080 _struct_ref_seq.db_align_beg 135 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 352 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 218 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YAL SCH A 25 ? UNP P14080 CYS 159 conflict 25 1 1 1YAL SCH A 117 ? UNP P14080 CYS 251 conflict 117 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SCH 'L-peptide linking' n S-METHYL-THIO-CYSTEINE ? 'C4 H9 N O2 S2' 167.250 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1YAL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_percent_sol 46.88 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.6' # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'ENRAF-NONIUS FAST' _diffrn_detector.pdbx_collection_date 1995-12-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type OTHER _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1YAL _reflns.observed_criterion_sigma_I 0. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.0 _reflns.d_resolution_high 1.7 _reflns.number_obs 20199 _reflns.number_all ? _reflns.percent_possible_obs 84.0 _reflns.pdbx_Rmerge_I_obs 0.066 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.6 _reflns.B_iso_Wilson_estimate 18.33 _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.79 _reflns_shell.percent_possible_all 69. _reflns_shell.Rmerge_I_obs 0.22 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.5 _reflns_shell.pdbx_redundancy 1.3 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1YAL _refine.ls_number_reflns_obs 20060 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 9.5 _refine.ls_d_res_high 1.7 _refine.ls_percent_reflns_obs 84. _refine.ls_R_factor_obs 0.1923 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1923 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 16.74 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1PPO' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YAL _refine_analyze.Luzzati_coordinate_error_obs 0.10 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 9.50 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1667 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 222 _refine_hist.number_atoms_total 1893 _refine_hist.d_res_high 1.7 _refine_hist.d_res_low 9.5 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.54 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.63 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.44 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.79 _refine_ls_shell.number_reflns_R_work 2017 _refine_ls_shell.R_factor_R_work 0.3 _refine_ls_shell.percent_reflns_obs 69. _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1YAL _struct.title 'CARICA PAPAYA CHYMOPAPAIN AT 1.7 ANGSTROMS RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YAL _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, THIOL PROTEASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SCH A 25 ? THR A 42 ? SCH A 25 THR A 42 1 ? 18 HELX_P HELX_P2 2 GLU A 50 ? CYS A 56 ? GLU A 50 CYS A 56 1 ? 7 HELX_P HELX_P3 3 GLY A 62 ? LYS A 64 ? GLY A 62 LYS A 64 5 ? 3 HELX_P HELX_P4 4 GLN A 68 ? ASN A 78 ? GLN A 68 ASN A 78 1 ? 11 HELX_P HELX_P5 5 ALA A 97 ? ASP A 99 ? ALA A 97 ASP A 99 5 ? 3 HELX_P HELX_P6 6 GLU A 118 ? LEU A 125 ? GLU A 118 LEU A 125 1 ? 8 HELX_P HELX_P7 7 LYS A 139 ? GLN A 142 ? LYS A 139 GLN A 142 1 ? 4 HELX_P HELX_P8 8 THR A 203 ? GLY A 205 ? THR A 203 GLY A 205 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 63 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.019 ? ? disulf2 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 56 A CYS 95 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? A CYS 153 SG ? ? ? 1_555 A CYS 204 SG ? ? A CYS 153 A CYS 204 1_555 ? ? ? ? ? ? ? 2.041 ? ? covale1 covale both ? A SER 24 C ? ? ? 1_555 A SCH 25 N ? ? A SER 24 A SCH 25 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale2 covale both ? A SCH 25 C ? ? ? 1_555 A TRP 26 N ? ? A SCH 25 A TRP 26 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale3 covale both ? A ASN 116 C ? ? ? 1_555 A SCH 117 N ? ? A ASN 116 A SCH 117 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? A SCH 117 C ? ? ? 1_555 A GLU 118 N ? ? A SCH 117 A GLU 118 1_555 ? ? ? ? ? ? ? 1.329 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 151 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 151 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 152 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 152 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.84 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 109 ? ARG A 112 ? GLY A 109 ARG A 112 A 2 TYR A 211 ? PHE A 214 ? TYR A 211 PHE A 214 B 1 LEU A 130 ? VAL A 134 ? LEU A 130 VAL A 134 B 2 HIS A 159 ? SER A 169 ? HIS A 159 SER A 169 B 3 LYS A 172 ? LYS A 178 ? LYS A 172 LYS A 178 B 4 TYR A 190 ? LYS A 194 ? TYR A 190 LYS A 194 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 109 ? O GLY A 109 N PHE A 214 ? N PHE A 214 B 1 2 O LEU A 130 ? O LEU A 130 N ALA A 163 ? N ALA A 163 B 2 3 O THR A 162 ? O THR A 162 N LYS A 178 ? N LYS A 178 B 3 4 O ILE A 175 ? O ILE A 175 N LEU A 193 ? N LEU A 193 # _database_PDB_matrix.entry_id 1YAL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1YAL _atom_sites.fract_transf_matrix[1][1] 0.006888 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001013 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030912 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021315 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 1 1 TYR TYR A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 TRP 7 7 7 TRP TRP A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 SCH 25 25 25 SCH SCH A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 HIS 59 59 59 HIS HIS A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 CYS 63 63 63 CYS CYS A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 HIS 81 81 81 HIS HIS A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 SCH 117 117 117 SCH SCH A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 PHE 141 141 141 PHE PHE A . n A 1 142 GLN 142 142 142 GLN GLN A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 TYR 144 144 144 TYR TYR A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 CYS 153 153 153 CYS CYS A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 THR 155 155 155 THR THR A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 HIS 159 159 159 HIS HIS A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 VAL 161 161 161 VAL VAL A . n A 1 162 THR 162 162 162 THR THR A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 TYR 166 166 166 TYR TYR A . n A 1 167 GLY 167 167 167 GLY GLY A . n A 1 168 THR 168 168 168 THR THR A . n A 1 169 SER 169 169 169 SER SER A . n A 1 170 ASP 170 170 170 ASP ASP A . n A 1 171 GLY 171 171 171 GLY GLY A . n A 1 172 LYS 172 172 172 LYS LYS A . n A 1 173 ASN 173 173 173 ASN ASN A . n A 1 174 TYR 174 174 174 TYR TYR A . n A 1 175 ILE 175 175 175 ILE ILE A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 ILE 177 177 177 ILE ILE A . n A 1 178 LYS 178 178 178 LYS LYS A . n A 1 179 ASN 179 179 179 ASN ASN A . n A 1 180 SER 180 180 180 SER SER A . n A 1 181 TRP 181 181 181 TRP TRP A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 PRO 183 183 183 PRO PRO A . n A 1 184 ASN 184 184 184 ASN ASN A . n A 1 185 TRP 185 185 185 TRP TRP A . n A 1 186 GLY 186 186 186 GLY GLY A . n A 1 187 GLU 187 187 187 GLU GLU A . n A 1 188 LYS 188 188 188 LYS LYS A . n A 1 189 GLY 189 189 189 GLY GLY A . n A 1 190 TYR 190 190 190 TYR TYR A . n A 1 191 MET 191 191 191 MET MET A . n A 1 192 ARG 192 192 192 ARG ARG A . n A 1 193 LEU 193 193 193 LEU LEU A . n A 1 194 LYS 194 194 194 LYS LYS A . n A 1 195 ARG 195 195 195 ARG ARG A . n A 1 196 GLN 196 196 196 GLN GLN A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 ASN 199 199 199 ASN ASN A . n A 1 200 SER 200 200 200 SER SER A . n A 1 201 GLN 201 201 201 GLN GLN A . n A 1 202 GLY 202 202 202 GLY GLY A . n A 1 203 THR 203 203 203 THR THR A . n A 1 204 CYS 204 204 204 CYS CYS A . n A 1 205 GLY 205 205 205 GLY GLY A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 TYR 207 207 207 TYR TYR A . n A 1 208 LYS 208 208 208 LYS LYS A . n A 1 209 SER 209 209 209 SER SER A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 TYR 211 211 211 TYR TYR A . n A 1 212 TYR 212 212 212 TYR TYR A . n A 1 213 PRO 213 213 213 PRO PRO A . n A 1 214 PHE 214 214 214 PHE PHE A . n A 1 215 LYS 215 215 215 LYS LYS A . n A 1 216 GLY 216 216 216 GLY GLY A . n A 1 217 PHE 217 217 217 PHE PHE A . n A 1 218 ALA 218 218 218 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 219 1 HOH HOH A . B 2 HOH 2 220 2 HOH HOH A . B 2 HOH 3 221 3 HOH HOH A . B 2 HOH 4 222 4 HOH HOH A . B 2 HOH 5 223 5 HOH HOH A . B 2 HOH 6 224 6 HOH HOH A . B 2 HOH 7 225 7 HOH HOH A . B 2 HOH 8 226 8 HOH HOH A . B 2 HOH 9 227 9 HOH HOH A . B 2 HOH 10 228 10 HOH HOH A . B 2 HOH 11 229 11 HOH HOH A . B 2 HOH 12 230 12 HOH HOH A . B 2 HOH 13 231 13 HOH HOH A . B 2 HOH 14 232 14 HOH HOH A . B 2 HOH 15 233 15 HOH HOH A . B 2 HOH 16 234 16 HOH HOH A . B 2 HOH 17 235 17 HOH HOH A . B 2 HOH 18 236 18 HOH HOH A . B 2 HOH 19 237 19 HOH HOH A . B 2 HOH 20 238 20 HOH HOH A . B 2 HOH 21 239 21 HOH HOH A . B 2 HOH 22 240 22 HOH HOH A . B 2 HOH 23 241 23 HOH HOH A . B 2 HOH 24 242 24 HOH HOH A . B 2 HOH 25 243 25 HOH HOH A . B 2 HOH 26 244 26 HOH HOH A . B 2 HOH 27 245 27 HOH HOH A . B 2 HOH 28 246 28 HOH HOH A . B 2 HOH 29 247 29 HOH HOH A . B 2 HOH 30 248 30 HOH HOH A . B 2 HOH 31 249 31 HOH HOH A . B 2 HOH 32 250 32 HOH HOH A . B 2 HOH 33 251 33 HOH HOH A . B 2 HOH 34 252 34 HOH HOH A . B 2 HOH 35 253 35 HOH HOH A . B 2 HOH 36 254 36 HOH HOH A . B 2 HOH 37 255 37 HOH HOH A . B 2 HOH 38 256 38 HOH HOH A . B 2 HOH 39 257 39 HOH HOH A . B 2 HOH 40 258 40 HOH HOH A . B 2 HOH 41 259 41 HOH HOH A . B 2 HOH 42 260 42 HOH HOH A . B 2 HOH 43 261 43 HOH HOH A . B 2 HOH 44 262 44 HOH HOH A . B 2 HOH 45 263 45 HOH HOH A . B 2 HOH 46 264 46 HOH HOH A . B 2 HOH 47 265 47 HOH HOH A . B 2 HOH 48 266 48 HOH HOH A . B 2 HOH 49 267 49 HOH HOH A . B 2 HOH 50 268 50 HOH HOH A . B 2 HOH 51 269 51 HOH HOH A . B 2 HOH 52 270 52 HOH HOH A . B 2 HOH 53 271 53 HOH HOH A . B 2 HOH 54 272 54 HOH HOH A . B 2 HOH 55 273 55 HOH HOH A . B 2 HOH 56 274 56 HOH HOH A . B 2 HOH 57 275 57 HOH HOH A . B 2 HOH 58 276 58 HOH HOH A . B 2 HOH 59 277 59 HOH HOH A . B 2 HOH 60 278 60 HOH HOH A . B 2 HOH 61 279 61 HOH HOH A . B 2 HOH 62 280 62 HOH HOH A . B 2 HOH 63 281 63 HOH HOH A . B 2 HOH 64 282 64 HOH HOH A . B 2 HOH 65 283 65 HOH HOH A . B 2 HOH 66 284 66 HOH HOH A . B 2 HOH 67 285 67 HOH HOH A . B 2 HOH 68 286 68 HOH HOH A . B 2 HOH 69 287 69 HOH HOH A . B 2 HOH 70 288 70 HOH HOH A . B 2 HOH 71 289 71 HOH HOH A . B 2 HOH 72 290 72 HOH HOH A . B 2 HOH 73 291 73 HOH HOH A . B 2 HOH 74 292 74 HOH HOH A . B 2 HOH 75 293 75 HOH HOH A . B 2 HOH 76 294 76 HOH HOH A . B 2 HOH 77 295 77 HOH HOH A . B 2 HOH 78 296 78 HOH HOH A . B 2 HOH 79 297 79 HOH HOH A . B 2 HOH 80 298 80 HOH HOH A . B 2 HOH 81 299 81 HOH HOH A . B 2 HOH 82 300 82 HOH HOH A . B 2 HOH 83 301 83 HOH HOH A . B 2 HOH 84 302 84 HOH HOH A . B 2 HOH 85 303 85 HOH HOH A . B 2 HOH 86 304 86 HOH HOH A . B 2 HOH 87 305 87 HOH HOH A . B 2 HOH 88 306 88 HOH HOH A . B 2 HOH 89 307 89 HOH HOH A . B 2 HOH 90 308 90 HOH HOH A . B 2 HOH 91 309 91 HOH HOH A . B 2 HOH 92 310 92 HOH HOH A . B 2 HOH 93 311 93 HOH HOH A . B 2 HOH 94 312 94 HOH HOH A . B 2 HOH 95 313 95 HOH HOH A . B 2 HOH 96 314 96 HOH HOH A . B 2 HOH 97 315 97 HOH HOH A . B 2 HOH 98 316 98 HOH HOH A . B 2 HOH 99 317 99 HOH HOH A . B 2 HOH 100 318 100 HOH HOH A . B 2 HOH 101 319 101 HOH HOH A . B 2 HOH 102 320 102 HOH HOH A . B 2 HOH 103 321 103 HOH HOH A . B 2 HOH 104 322 104 HOH HOH A . B 2 HOH 105 323 105 HOH HOH A . B 2 HOH 106 324 106 HOH HOH A . B 2 HOH 107 325 107 HOH HOH A . B 2 HOH 108 326 108 HOH HOH A . B 2 HOH 109 327 109 HOH HOH A . B 2 HOH 110 328 110 HOH HOH A . B 2 HOH 111 329 111 HOH HOH A . B 2 HOH 112 330 112 HOH HOH A . B 2 HOH 113 331 113 HOH HOH A . B 2 HOH 114 332 114 HOH HOH A . B 2 HOH 115 333 115 HOH HOH A . B 2 HOH 116 334 116 HOH HOH A . B 2 HOH 117 335 117 HOH HOH A . B 2 HOH 118 336 118 HOH HOH A . B 2 HOH 119 337 119 HOH HOH A . B 2 HOH 120 338 120 HOH HOH A . B 2 HOH 121 339 121 HOH HOH A . B 2 HOH 122 340 122 HOH HOH A . B 2 HOH 123 341 123 HOH HOH A . B 2 HOH 124 342 124 HOH HOH A . B 2 HOH 125 343 125 HOH HOH A . B 2 HOH 126 344 126 HOH HOH A . B 2 HOH 127 345 127 HOH HOH A . B 2 HOH 128 346 128 HOH HOH A . B 2 HOH 129 347 129 HOH HOH A . B 2 HOH 130 348 130 HOH HOH A . B 2 HOH 131 349 131 HOH HOH A . B 2 HOH 132 350 132 HOH HOH A . B 2 HOH 133 351 133 HOH HOH A . B 2 HOH 134 352 134 HOH HOH A . B 2 HOH 135 353 135 HOH HOH A . B 2 HOH 136 354 136 HOH HOH A . B 2 HOH 137 355 137 HOH HOH A . B 2 HOH 138 356 138 HOH HOH A . B 2 HOH 139 357 139 HOH HOH A . B 2 HOH 140 358 140 HOH HOH A . B 2 HOH 141 359 141 HOH HOH A . B 2 HOH 142 360 142 HOH HOH A . B 2 HOH 143 361 143 HOH HOH A . B 2 HOH 144 362 144 HOH HOH A . B 2 HOH 145 363 145 HOH HOH A . B 2 HOH 146 364 146 HOH HOH A . B 2 HOH 147 365 147 HOH HOH A . B 2 HOH 148 366 148 HOH HOH A . B 2 HOH 149 367 149 HOH HOH A . B 2 HOH 150 368 150 HOH HOH A . B 2 HOH 151 369 151 HOH HOH A . B 2 HOH 152 370 152 HOH HOH A . B 2 HOH 153 371 153 HOH HOH A . B 2 HOH 154 372 154 HOH HOH A . B 2 HOH 155 373 155 HOH HOH A . B 2 HOH 156 374 156 HOH HOH A . B 2 HOH 157 375 157 HOH HOH A . B 2 HOH 158 376 158 HOH HOH A . B 2 HOH 159 377 159 HOH HOH A . B 2 HOH 160 378 160 HOH HOH A . B 2 HOH 161 379 161 HOH HOH A . B 2 HOH 162 380 162 HOH HOH A . B 2 HOH 163 381 163 HOH HOH A . B 2 HOH 164 382 164 HOH HOH A . B 2 HOH 165 383 165 HOH HOH A . B 2 HOH 166 384 166 HOH HOH A . B 2 HOH 167 385 167 HOH HOH A . B 2 HOH 168 386 168 HOH HOH A . B 2 HOH 169 387 169 HOH HOH A . B 2 HOH 170 388 170 HOH HOH A . B 2 HOH 171 389 171 HOH HOH A . B 2 HOH 172 390 172 HOH HOH A . B 2 HOH 173 391 173 HOH HOH A . B 2 HOH 174 392 174 HOH HOH A . B 2 HOH 175 393 175 HOH HOH A . B 2 HOH 176 394 176 HOH HOH A . B 2 HOH 177 395 177 HOH HOH A . B 2 HOH 178 396 178 HOH HOH A . B 2 HOH 179 397 179 HOH HOH A . B 2 HOH 180 398 180 HOH HOH A . B 2 HOH 181 399 181 HOH HOH A . B 2 HOH 182 400 182 HOH HOH A . B 2 HOH 183 401 183 HOH HOH A . B 2 HOH 184 402 184 HOH HOH A . B 2 HOH 185 403 185 HOH HOH A . B 2 HOH 186 404 186 HOH HOH A . B 2 HOH 187 405 187 HOH HOH A . B 2 HOH 188 406 188 HOH HOH A . B 2 HOH 189 407 189 HOH HOH A . B 2 HOH 190 408 190 HOH HOH A . B 2 HOH 191 409 191 HOH HOH A . B 2 HOH 192 410 192 HOH HOH A . B 2 HOH 193 411 193 HOH HOH A . B 2 HOH 194 412 194 HOH HOH A . B 2 HOH 195 413 195 HOH HOH A . B 2 HOH 196 414 196 HOH HOH A . B 2 HOH 197 415 197 HOH HOH A . B 2 HOH 198 416 198 HOH HOH A . B 2 HOH 199 417 199 HOH HOH A . B 2 HOH 200 418 200 HOH HOH A . B 2 HOH 201 419 201 HOH HOH A . B 2 HOH 202 420 202 HOH HOH A . B 2 HOH 203 421 203 HOH HOH A . B 2 HOH 204 422 204 HOH HOH A . B 2 HOH 205 423 205 HOH HOH A . B 2 HOH 206 424 206 HOH HOH A . B 2 HOH 207 425 207 HOH HOH A . B 2 HOH 208 426 208 HOH HOH A . B 2 HOH 209 427 209 HOH HOH A . B 2 HOH 210 428 210 HOH HOH A . B 2 HOH 211 429 211 HOH HOH A . B 2 HOH 212 430 212 HOH HOH A . B 2 HOH 213 431 213 HOH HOH A . B 2 HOH 214 432 214 HOH HOH A . B 2 HOH 215 433 215 HOH HOH A . B 2 HOH 216 434 216 HOH HOH A . B 2 HOH 217 435 217 HOH HOH A . B 2 HOH 218 436 218 HOH HOH A . B 2 HOH 219 437 219 HOH HOH A . B 2 HOH 220 438 220 HOH HOH A . B 2 HOH 221 439 221 HOH HOH A . B 2 HOH 222 440 222 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A SCH 25 A SCH 25 ? CYS S-METHYL-THIO-CYSTEINE 2 A SCH 117 A SCH 117 ? CYS S-METHYL-THIO-CYSTEINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -6.9026935699 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 46.9149147018 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-12-23 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-04-04 5 'Structure model' 1 4 2018-04-18 6 'Structure model' 1 5 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' 7 6 'Structure model' Advisory 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Derived calculations' 10 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 4 5 'Structure model' diffrn_detector 5 6 'Structure model' database_2 6 6 'Structure model' pdbx_initial_refinement_model 7 6 'Structure model' pdbx_unobs_or_zero_occ_atoms 8 6 'Structure model' struct_conn 9 6 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.type' 2 4 'Structure model' '_pdbx_database_status.process_site' 3 5 'Structure model' '_diffrn_detector.detector' 4 6 'Structure model' '_database_2.pdbx_DOI' 5 6 'Structure model' '_database_2.pdbx_database_accession' 6 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 6 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MADNES 'data collection' . ? 1 CCP4 'data reduction' . ? 2 X-PLOR 'model building' 3.1 ? 3 X-PLOR refinement 3.1 ? 4 MADNES 'data reduction' . ? 5 CCP4 'data scaling' . ? 6 X-PLOR phasing 3.1 ? 7 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 93 ? ? -126.68 -169.02 2 1 PRO A 101 ? ? -98.62 -155.79 3 1 ASP A 158 ? ? -150.14 9.32 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLN 3 ? CD ? A GLN 3 CD 2 1 Y 0 A GLN 3 ? OE1 ? A GLN 3 OE1 3 1 Y 0 A GLN 3 ? NE2 ? A GLN 3 NE2 4 1 Y 0 A LYS 58 ? CG ? A LYS 58 CG 5 1 Y 0 A LYS 58 ? CD ? A LYS 58 CD 6 1 Y 0 A LYS 58 ? CE ? A LYS 58 CE 7 1 Y 0 A LYS 58 ? NZ ? A LYS 58 NZ 8 1 Y 0 A LYS 64 ? NZ ? A LYS 64 NZ 9 1 Y 0 A LYS 84 ? CD ? A LYS 84 CD 10 1 Y 0 A LYS 84 ? CE ? A LYS 84 CE 11 1 Y 0 A LYS 84 ? NZ ? A LYS 84 NZ 12 1 Y 0 A LYS 91 ? CD ? A LYS 91 CD 13 1 Y 0 A LYS 91 ? CE ? A LYS 91 CE 14 1 Y 0 A LYS 91 ? NZ ? A LYS 91 NZ 15 1 Y 0 A LYS 94 ? CE ? A LYS 94 CE 16 1 Y 0 A LYS 94 ? NZ ? A LYS 94 NZ 17 1 Y 0 A ASP 99 ? CA ? A ASP 99 CA 18 1 Y 0 A ASP 99 ? C ? A ASP 99 C 19 1 Y 0 A ASP 99 ? O ? A ASP 99 O 20 1 Y 0 A ASP 99 ? CB ? A ASP 99 CB 21 1 Y 0 A ASP 99 ? CG ? A ASP 99 CG 22 1 Y 0 A ASP 99 ? OD1 ? A ASP 99 OD1 23 1 Y 0 A ASP 99 ? OD2 ? A ASP 99 OD2 24 1 Y 0 A LYS 145 ? CD ? A LYS 145 CD 25 1 Y 0 A LYS 145 ? CE ? A LYS 145 CE 26 1 Y 0 A LYS 145 ? NZ ? A LYS 145 NZ # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PPO _pdbx_initial_refinement_model.details 'PDB ENTRY 1PPO' #