data_1YB3 # _entry.id 1YB3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1YB3 RCSB RCSB031329 WWPDB D_1000031329 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id Pfu-178653-001 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1YB3 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2004-12-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Habel, J.' 1 'Zhou, W.' 2 'Chang, J.' 3 'Zhao, M.' 4 'Xu, H.' 5 'Chen, L.' 6 'Lee, D.' 7 'Nguyen, D.' 8 'Chang, S.-H.' 9 'Horanyi, P.' 10 'Florence, Q.' 11 'Tempel, W.' 12 'Lin, D.' 13 'Zhang, H.' 14 'Praissman, J.' 15 'Jenney Jr., F.E.' 16 'Adams, M.W.W.' 17 'Liu, Z.-J.' 18 'Rose, J.P.' 19 'Wang, B.-C.' 20 'Southeast Collaboratory for Structural Genomics (SECSG)' 21 # _citation.id primary _citation.title 'Conserved hypothetical protein Pfu-178653-001 from Pyrococcus furiosus' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Habel, J.' 1 primary 'Zhou, W.' 2 primary 'Chang, J.' 3 primary 'Zhao, M.' 4 primary 'Xu, H.' 5 primary 'Chen, L.' 6 primary 'Lee, D.' 7 primary 'Nguyen, D.' 8 primary 'Chang, S.-H.' 9 primary 'Horanyi, P.' 10 primary 'Florence, Q.' 11 primary 'Tempel, W.' 12 primary 'Lin, D.' 13 primary 'Zhang, H.' 14 primary 'Praissman, J.' 15 primary 'Jenney Jr., F.E.' 16 primary 'Adams, M.W.W.' 17 primary 'Liu, Z.-J.' 18 primary 'Rose, J.P.' 19 primary 'Wang, B.-C.' 20 # _cell.length_a 109.134 _cell.length_b 44.388 _cell.length_c 55.326 _cell.angle_alpha 90.00 _cell.angle_beta 118.82 _cell.angle_gamma 90.00 _cell.entry_id 1YB3 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.Int_Tables_number 5 _symmetry.entry_id 1YB3 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein' 21019.145 1 ? ? ? ? 2 non-polymer syn 'UNKNOWN ATOM OR ION' ? 1 ? ? ? ? 3 water nat water 18.015 102 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;AHHHHHHGS(MSE)LKEVHELLNRIWGDIFELREELKEELKGFTVEEVSEVFNAYLYIDGKWEE(MSE)KYPHPAFAVKP GGEVGATPQGFYFVFAFPKEELSKEFIEDVIRAFEKLFIYGAENFLEDFYNFEHPISGDEVWDRIVNSDEE(MSE)INFE VDLGFDKEEVKREIKRFIELARRYNLL ; _entity_poly.pdbx_seq_one_letter_code_can ;AHHHHHHGSMLKEVHELLNRIWGDIFELREELKEELKGFTVEEVSEVFNAYLYIDGKWEEMKYPHPAFAVKPGGEVGATP QGFYFVFAFPKEELSKEFIEDVIRAFEKLFIYGAENFLEDFYNFEHPISGDEVWDRIVNSDEEMINFEVDLGFDKEEVKR EIKRFIELARRYNLL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier Pfu-178653-001 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 GLY n 1 9 SER n 1 10 MSE n 1 11 LEU n 1 12 LYS n 1 13 GLU n 1 14 VAL n 1 15 HIS n 1 16 GLU n 1 17 LEU n 1 18 LEU n 1 19 ASN n 1 20 ARG n 1 21 ILE n 1 22 TRP n 1 23 GLY n 1 24 ASP n 1 25 ILE n 1 26 PHE n 1 27 GLU n 1 28 LEU n 1 29 ARG n 1 30 GLU n 1 31 GLU n 1 32 LEU n 1 33 LYS n 1 34 GLU n 1 35 GLU n 1 36 LEU n 1 37 LYS n 1 38 GLY n 1 39 PHE n 1 40 THR n 1 41 VAL n 1 42 GLU n 1 43 GLU n 1 44 VAL n 1 45 SER n 1 46 GLU n 1 47 VAL n 1 48 PHE n 1 49 ASN n 1 50 ALA n 1 51 TYR n 1 52 LEU n 1 53 TYR n 1 54 ILE n 1 55 ASP n 1 56 GLY n 1 57 LYS n 1 58 TRP n 1 59 GLU n 1 60 GLU n 1 61 MSE n 1 62 LYS n 1 63 TYR n 1 64 PRO n 1 65 HIS n 1 66 PRO n 1 67 ALA n 1 68 PHE n 1 69 ALA n 1 70 VAL n 1 71 LYS n 1 72 PRO n 1 73 GLY n 1 74 GLY n 1 75 GLU n 1 76 VAL n 1 77 GLY n 1 78 ALA n 1 79 THR n 1 80 PRO n 1 81 GLN n 1 82 GLY n 1 83 PHE n 1 84 TYR n 1 85 PHE n 1 86 VAL n 1 87 PHE n 1 88 ALA n 1 89 PHE n 1 90 PRO n 1 91 LYS n 1 92 GLU n 1 93 GLU n 1 94 LEU n 1 95 SER n 1 96 LYS n 1 97 GLU n 1 98 PHE n 1 99 ILE n 1 100 GLU n 1 101 ASP n 1 102 VAL n 1 103 ILE n 1 104 ARG n 1 105 ALA n 1 106 PHE n 1 107 GLU n 1 108 LYS n 1 109 LEU n 1 110 PHE n 1 111 ILE n 1 112 TYR n 1 113 GLY n 1 114 ALA n 1 115 GLU n 1 116 ASN n 1 117 PHE n 1 118 LEU n 1 119 GLU n 1 120 ASP n 1 121 PHE n 1 122 TYR n 1 123 ASN n 1 124 PHE n 1 125 GLU n 1 126 HIS n 1 127 PRO n 1 128 ILE n 1 129 SER n 1 130 GLY n 1 131 ASP n 1 132 GLU n 1 133 VAL n 1 134 TRP n 1 135 ASP n 1 136 ARG n 1 137 ILE n 1 138 VAL n 1 139 ASN n 1 140 SER n 1 141 ASP n 1 142 GLU n 1 143 GLU n 1 144 MSE n 1 145 ILE n 1 146 ASN n 1 147 PHE n 1 148 GLU n 1 149 VAL n 1 150 ASP n 1 151 LEU n 1 152 GLY n 1 153 PHE n 1 154 ASP n 1 155 LYS n 1 156 GLU n 1 157 GLU n 1 158 VAL n 1 159 LYS n 1 160 ARG n 1 161 GLU n 1 162 ILE n 1 163 LYS n 1 164 ARG n 1 165 PHE n 1 166 ILE n 1 167 GLU n 1 168 LEU n 1 169 ALA n 1 170 ARG n 1 171 ARG n 1 172 TYR n 1 173 ASN n 1 174 LEU n 1 175 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus furiosus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2261 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8U4C0_PYRFU _struct_ref.pdbx_db_accession Q8U4C0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLKEVHELLNRIWGDIFELREELKEELKGFTVEEVSEVFNAYLYIDGKWEEMKYPHPAFAVKPGGEVGATPQGFYFVFAF PKEELSKEFIEDVIRAFEKLFIYGAENFLEDFYNFEHPISGDEVWDRIVNSDEEMINFEVDLGFDKEEVKREIKRFIELA RRYNLL ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YB3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 10 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 175 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8U4C0 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 167 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 167 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YB3 ALA A 1 ? UNP Q8U4C0 ? ? 'CLONING ARTIFACT' -7 1 1 1YB3 HIS A 2 ? UNP Q8U4C0 ? ? 'CLONING ARTIFACT' -6 2 1 1YB3 HIS A 3 ? UNP Q8U4C0 ? ? 'CLONING ARTIFACT' -5 3 1 1YB3 HIS A 4 ? UNP Q8U4C0 ? ? 'CLONING ARTIFACT' -4 4 1 1YB3 HIS A 5 ? UNP Q8U4C0 ? ? 'CLONING ARTIFACT' -3 5 1 1YB3 HIS A 6 ? UNP Q8U4C0 ? ? 'CLONING ARTIFACT' -2 6 1 1YB3 HIS A 7 ? UNP Q8U4C0 ? ? 'CLONING ARTIFACT' -1 7 1 1YB3 GLY A 8 ? UNP Q8U4C0 ? ? 'CLONING ARTIFACT' 0 8 1 1YB3 SER A 9 ? UNP Q8U4C0 ? ? 'CLONING ARTIFACT' 1 9 1 1YB3 MSE A 10 ? UNP Q8U4C0 MET 2 'MODIFIED RESIDUE' 2 10 1 1YB3 MSE A 61 ? UNP Q8U4C0 MET 53 'MODIFIED RESIDUE' 53 11 1 1YB3 MSE A 144 ? UNP Q8U4C0 MET 136 'MODIFIED RESIDUE' 136 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1YB3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.96 _exptl_crystal.density_Matthews 2.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'modified microbatch' _exptl_crystal_grow.pH 3.6 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '12% w/v PEG 4000, 0.2M sodium chloride, 0.2M magnesium chloride, 0.1M sodium citrate, pH 3.6, modified microbatch, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_wavelength_list 0.9795 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID # _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.60 _reflns.number_obs 26254 _reflns.percent_possible_obs 84.800 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_chi_squared 1.337 _reflns.entry_id 1YB3 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_measured_all _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_chi_squared _reflns_shell.number_unique_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.percent_possible_obs _reflns_shell.pdbx_redundancy _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.66 1.60 1066 34.600 0.218 1.013 ? ? ? ? ? ? ? 1 1 1.72 1.66 1595 51.600 0.2 1.132 ? ? ? ? ? ? ? 2 1 1.80 1.72 2356 77.300 0.195 0.915 ? ? ? ? ? ? ? 3 1 1.90 1.80 2925 95.000 0.165 1.026 ? ? ? ? ? ? ? 4 1 2.02 1.90 3022 97.600 0.128 1.157 ? ? ? ? ? ? ? 5 1 2.17 2.02 3007 97.900 0.085 1.308 ? ? ? ? ? ? ? 6 1 2.39 2.17 3031 98.000 0.067 1.500 ? ? ? ? ? ? ? 7 1 2.74 2.39 3049 98.300 0.058 1.540 ? ? ? ? ? ? ? 8 1 3.45 2.74 3074 98.400 0.049 1.822 ? ? ? ? ? ? ? 9 1 50.00 3.45 3129 98.200 0.042 1.231 ? ? ? ? ? ? ? 10 1 # _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.B_iso_mean 26.965 _refine.aniso_B[1][1] -1.491 _refine.aniso_B[2][2] 0.988 _refine.aniso_B[3][3] 0.359 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.150 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.ls_d_res_high 1.6 _refine.ls_d_res_low 48.450 _refine.ls_number_reflns_R_free 1312 _refine.ls_number_reflns_obs 26254 _refine.ls_R_factor_R_work 0.2039 _refine.ls_R_factor_R_free 0.2291 _refine.ls_R_factor_all 0.205 _refine.ls_wR_factor_R_work 0.217 _refine.ls_wR_factor_R_free 0.245 _refine.ls_percent_reflns_obs 84.792 _refine.ls_percent_reflns_R_free 4.997 _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.pdbx_overall_ESU_R 0.100 _refine.pdbx_overall_ESU_R_Free 0.097 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_SU_R_Cruickshank_DPI 0.100 _refine.overall_SU_ML 0.060 _refine.overall_SU_B 1.663 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.entry_id 1YB3 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.20521 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct SAS _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1392 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 1495 _refine_hist.d_res_high 1.6 _refine_hist.d_res_low 48.450 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1461 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1974 1.151 1.954 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 165 5.310 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 88 27.983 25.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 258 12.034 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 17.644 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 202 0.087 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1150 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 642 0.194 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1009 0.309 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 76 0.098 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 44 0.212 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 7 0.118 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 873 2.373 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1352 3.040 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 690 2.437 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 622 3.637 3.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_all 20 1.639 1.6 2276 33.260 718 0.282 39 0.324 . . . . 'X-RAY DIFFRACTION' . 20 1.684 1.639 2209 43.187 910 0.283 44 0.326 . . . . 'X-RAY DIFFRACTION' . 20 1.733 1.684 2167 59.160 1223 0.286 59 0.308 . . . . 'X-RAY DIFFRACTION' . 20 1.786 1.733 2089 77.262 1536 0.272 78 0.337 . . . . 'X-RAY DIFFRACTION' . 20 1.845 1.786 2027 91.909 1774 0.257 89 0.29 . . . . 'X-RAY DIFFRACTION' . 20 1.909 1.845 1957 96.934 1811 0.222 86 0.284 . . . . 'X-RAY DIFFRACTION' . 20 1.981 1.909 1888 97.511 1746 0.216 95 0.231 . . . . 'X-RAY DIFFRACTION' . 20 2.062 1.981 1832 97.653 1703 0.201 86 0.27 . . . . 'X-RAY DIFFRACTION' . 20 2.154 2.062 1761 97.899 1632 0.196 92 0.218 . . . . 'X-RAY DIFFRACTION' . 20 2.259 2.154 1677 98.151 1555 0.196 91 0.245 . . . . 'X-RAY DIFFRACTION' . 20 2.380 2.259 1601 98.064 1498 0.202 72 0.237 . . . . 'X-RAY DIFFRACTION' . 20 2.524 2.380 1503 98.204 1407 0.212 69 0.236 . . . . 'X-RAY DIFFRACTION' . 20 2.698 2.524 1427 98.248 1335 0.223 67 0.264 . . . . 'X-RAY DIFFRACTION' . 20 2.914 2.698 1331 98.272 1236 0.22 72 0.227 . . . . 'X-RAY DIFFRACTION' . 20 3.191 2.914 1234 98.622 1150 0.205 67 0.216 . . . . 'X-RAY DIFFRACTION' . 20 3.565 3.191 1101 98.638 1038 0.191 48 0.205 . . . . 'X-RAY DIFFRACTION' . 20 4.113 3.565 992 98.286 921 0.181 54 0.185 . . . . 'X-RAY DIFFRACTION' . 20 5.028 4.113 848 98.349 786 0.156 48 0.174 . . . . 'X-RAY DIFFRACTION' . 20 7.073 5.028 656 99.695 620 0.207 34 0.263 . . . . 'X-RAY DIFFRACTION' . 20 48.450 7.073 387 94.315 343 0.217 22 0.24 . . . . 'X-RAY DIFFRACTION' . # _struct.entry_id 1YB3 _struct.title 'Conserved hypothetical protein Pfu-178653-001 from Pyrococcus furiosus' _struct.pdbx_descriptor 'hypothetical protein PF0168' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Structural Genomics, Protein Structure Initiative, PSI, conserved hypothetical protein, Pyrococcus furiosus, hyperthermophile, SECSG, The Southeast Collaboratory for Structural Genomics, UNKNOWN FUNCTION ; _struct_keywords.entry_id 1YB3 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 10 ? LEU A 36 ? MSE A 2 LEU A 28 1 ? 27 HELX_P HELX_P2 2 GLU A 92 ? LEU A 94 ? GLU A 84 LEU A 86 5 ? 3 HELX_P HELX_P3 3 SER A 95 ? PHE A 106 ? SER A 87 PHE A 98 1 ? 12 HELX_P HELX_P4 4 SER A 129 ? ASN A 139 ? SER A 121 ASN A 131 1 ? 11 HELX_P HELX_P5 5 ASP A 154 ? TYR A 172 ? ASP A 146 TYR A 164 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 10 C ? ? ? 1_555 A LEU 11 N ? ? A MSE 2 A LEU 3 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale ? ? A GLU 60 C ? ? ? 1_555 A MSE 61 N ? ? A GLU 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A MSE 61 C ? ? ? 1_555 A LYS 62 N ? ? A MSE 53 A LYS 54 1_555 ? ? ? ? ? ? ? 1.337 ? covale4 covale ? ? A GLU 143 C ? ? ? 1_555 A MSE 144 N ? ? A GLU 135 A MSE 136 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? A MSE 144 C ? ? ? 1_555 A ILE 145 N ? ? A MSE 136 A ILE 137 1_555 ? ? ? ? ? ? ? 1.334 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 71 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 63 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 72 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 64 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.25 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 7 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 40 ? VAL A 41 ? THR A 32 VAL A 33 A 2 HIS A 65 ? LYS A 71 ? HIS A 57 LYS A 63 A 3 SER A 45 ? VAL A 47 ? SER A 37 VAL A 39 B 1 THR A 40 ? VAL A 41 ? THR A 32 VAL A 33 B 2 HIS A 65 ? LYS A 71 ? HIS A 57 LYS A 63 B 3 GLY A 74 ? THR A 79 ? GLY A 66 THR A 71 B 4 GLY A 82 ? PRO A 90 ? GLY A 74 PRO A 82 B 5 MSE A 144 ? ASP A 150 ? MSE A 136 ASP A 142 B 6 LYS A 108 ? TYR A 112 ? LYS A 100 TYR A 104 B 7 ASP A 120 ? ASN A 123 ? ASP A 112 ASN A 115 C 1 TYR A 51 ? ILE A 54 ? TYR A 43 ILE A 46 C 2 LYS A 57 ? GLU A 60 ? LYS A 49 GLU A 52 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 40 ? N THR A 32 O LYS A 71 ? O LYS A 63 A 2 3 O ALA A 67 ? O ALA A 59 N SER A 45 ? N SER A 37 B 1 2 N THR A 40 ? N THR A 32 O LYS A 71 ? O LYS A 63 B 2 3 N PHE A 68 ? N PHE A 60 O VAL A 76 ? O VAL A 68 B 3 4 N GLY A 77 ? N GLY A 69 O TYR A 84 ? O TYR A 76 B 4 5 N PHE A 89 ? N PHE A 81 O ILE A 145 ? O ILE A 137 B 5 6 O ASN A 146 ? O ASN A 138 N TYR A 112 ? N TYR A 104 B 6 7 N ILE A 111 ? N ILE A 103 O TYR A 122 ? O TYR A 114 C 1 2 N ILE A 54 ? N ILE A 46 O LYS A 57 ? O LYS A 49 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE UNX A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLY A 38 ? GLY A 30 . ? 4_545 ? 2 AC1 4 GLU A 107 ? GLU A 99 . ? 1_555 ? 3 AC1 4 HOH C . ? HOH A 209 . ? 1_555 ? 4 AC1 4 HOH C . ? HOH A 240 . ? 4_545 ? # _atom_sites.entry_id 1YB3 _atom_sites.fract_transf_matrix[1][1] 0.0092 _atom_sites.fract_transf_matrix[1][2] 0.0000 _atom_sites.fract_transf_matrix[1][3] 0.0050 _atom_sites.fract_transf_matrix[2][1] 0.0000 _atom_sites.fract_transf_matrix[2][2] 0.0225 _atom_sites.fract_transf_matrix[2][3] 0.0000 _atom_sites.fract_transf_matrix[3][1] 0.0000 _atom_sites.fract_transf_matrix[3][2] 0.0000 _atom_sites.fract_transf_matrix[3][3] 0.0206 _atom_sites.fract_transf_vector[1] 0.0000 _atom_sites.fract_transf_vector[2] 0.0000 _atom_sites.fract_transf_vector[3] 0.0000 # loop_ _atom_type.symbol C N O SE X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 -7 ? ? ? A . n A 1 2 HIS 2 -6 ? ? ? A . n A 1 3 HIS 3 -5 ? ? ? A . n A 1 4 HIS 4 -4 ? ? ? A . n A 1 5 HIS 5 -3 ? ? ? A . n A 1 6 HIS 6 -2 ? ? ? A . n A 1 7 HIS 7 -1 ? ? ? A . n A 1 8 GLY 8 0 ? ? ? A . n A 1 9 SER 9 1 ? ? ? A . n A 1 10 MSE 10 2 2 MSE MSE A . n A 1 11 LEU 11 3 3 LEU LEU A . n A 1 12 LYS 12 4 4 LYS LYS A . n A 1 13 GLU 13 5 5 GLU GLU A . n A 1 14 VAL 14 6 6 VAL VAL A . n A 1 15 HIS 15 7 7 HIS HIS A . n A 1 16 GLU 16 8 8 GLU GLU A . n A 1 17 LEU 17 9 9 LEU LEU A . n A 1 18 LEU 18 10 10 LEU LEU A . n A 1 19 ASN 19 11 11 ASN ASN A . n A 1 20 ARG 20 12 12 ARG ARG A . n A 1 21 ILE 21 13 13 ILE ILE A . n A 1 22 TRP 22 14 14 TRP TRP A . n A 1 23 GLY 23 15 15 GLY GLY A . n A 1 24 ASP 24 16 16 ASP ASP A . n A 1 25 ILE 25 17 17 ILE ILE A . n A 1 26 PHE 26 18 18 PHE PHE A . n A 1 27 GLU 27 19 19 GLU GLU A . n A 1 28 LEU 28 20 20 LEU LEU A . n A 1 29 ARG 29 21 21 ARG ARG A . n A 1 30 GLU 30 22 22 GLU GLU A . n A 1 31 GLU 31 23 23 GLU GLU A . n A 1 32 LEU 32 24 24 LEU LEU A . n A 1 33 LYS 33 25 25 LYS LYS A . n A 1 34 GLU 34 26 26 GLU GLU A . n A 1 35 GLU 35 27 27 GLU GLU A . n A 1 36 LEU 36 28 28 LEU LEU A . n A 1 37 LYS 37 29 29 LYS LYS A . n A 1 38 GLY 38 30 30 GLY GLY A . n A 1 39 PHE 39 31 31 PHE PHE A . n A 1 40 THR 40 32 32 THR THR A . n A 1 41 VAL 41 33 33 VAL VAL A . n A 1 42 GLU 42 34 34 GLU GLU A . n A 1 43 GLU 43 35 35 GLU GLU A . n A 1 44 VAL 44 36 36 VAL VAL A . n A 1 45 SER 45 37 37 SER SER A . n A 1 46 GLU 46 38 38 GLU GLU A . n A 1 47 VAL 47 39 39 VAL VAL A . n A 1 48 PHE 48 40 40 PHE PHE A . n A 1 49 ASN 49 41 41 ASN ASN A . n A 1 50 ALA 50 42 42 ALA ALA A . n A 1 51 TYR 51 43 43 TYR TYR A . n A 1 52 LEU 52 44 44 LEU LEU A . n A 1 53 TYR 53 45 45 TYR TYR A . n A 1 54 ILE 54 46 46 ILE ILE A . n A 1 55 ASP 55 47 47 ASP ASP A . n A 1 56 GLY 56 48 48 GLY GLY A . n A 1 57 LYS 57 49 49 LYS LYS A . n A 1 58 TRP 58 50 50 TRP TRP A . n A 1 59 GLU 59 51 51 GLU GLU A . n A 1 60 GLU 60 52 52 GLU GLU A . n A 1 61 MSE 61 53 53 MSE MSE A . n A 1 62 LYS 62 54 54 LYS LYS A . n A 1 63 TYR 63 55 55 TYR TYR A . n A 1 64 PRO 64 56 56 PRO PRO A . n A 1 65 HIS 65 57 57 HIS HIS A . n A 1 66 PRO 66 58 58 PRO PRO A . n A 1 67 ALA 67 59 59 ALA ALA A . n A 1 68 PHE 68 60 60 PHE PHE A . n A 1 69 ALA 69 61 61 ALA ALA A . n A 1 70 VAL 70 62 62 VAL VAL A . n A 1 71 LYS 71 63 63 LYS LYS A . n A 1 72 PRO 72 64 64 PRO PRO A . n A 1 73 GLY 73 65 65 GLY GLY A . n A 1 74 GLY 74 66 66 GLY GLY A . n A 1 75 GLU 75 67 67 GLU GLU A . n A 1 76 VAL 76 68 68 VAL VAL A . n A 1 77 GLY 77 69 69 GLY GLY A . n A 1 78 ALA 78 70 70 ALA ALA A . n A 1 79 THR 79 71 71 THR THR A . n A 1 80 PRO 80 72 72 PRO PRO A . n A 1 81 GLN 81 73 73 GLN GLN A . n A 1 82 GLY 82 74 74 GLY GLY A . n A 1 83 PHE 83 75 75 PHE PHE A . n A 1 84 TYR 84 76 76 TYR TYR A . n A 1 85 PHE 85 77 77 PHE PHE A . n A 1 86 VAL 86 78 78 VAL VAL A . n A 1 87 PHE 87 79 79 PHE PHE A . n A 1 88 ALA 88 80 80 ALA ALA A . n A 1 89 PHE 89 81 81 PHE PHE A . n A 1 90 PRO 90 82 82 PRO PRO A . n A 1 91 LYS 91 83 83 LYS LYS A . n A 1 92 GLU 92 84 84 GLU GLU A . n A 1 93 GLU 93 85 85 GLU GLU A . n A 1 94 LEU 94 86 86 LEU LEU A . n A 1 95 SER 95 87 87 SER SER A . n A 1 96 LYS 96 88 88 LYS LYS A . n A 1 97 GLU 97 89 89 GLU GLU A . n A 1 98 PHE 98 90 90 PHE PHE A . n A 1 99 ILE 99 91 91 ILE ILE A . n A 1 100 GLU 100 92 92 GLU GLU A . n A 1 101 ASP 101 93 93 ASP ASP A . n A 1 102 VAL 102 94 94 VAL VAL A . n A 1 103 ILE 103 95 95 ILE ILE A . n A 1 104 ARG 104 96 96 ARG ARG A . n A 1 105 ALA 105 97 97 ALA ALA A . n A 1 106 PHE 106 98 98 PHE PHE A . n A 1 107 GLU 107 99 99 GLU GLU A . n A 1 108 LYS 108 100 100 LYS LYS A . n A 1 109 LEU 109 101 101 LEU LEU A . n A 1 110 PHE 110 102 102 PHE PHE A . n A 1 111 ILE 111 103 103 ILE ILE A . n A 1 112 TYR 112 104 104 TYR TYR A . n A 1 113 GLY 113 105 105 GLY GLY A . n A 1 114 ALA 114 106 106 ALA ALA A . n A 1 115 GLU 115 107 107 GLU GLU A . n A 1 116 ASN 116 108 108 ASN ASN A . n A 1 117 PHE 117 109 109 PHE PHE A . n A 1 118 LEU 118 110 110 LEU LEU A . n A 1 119 GLU 119 111 111 GLU GLU A . n A 1 120 ASP 120 112 112 ASP ASP A . n A 1 121 PHE 121 113 113 PHE PHE A . n A 1 122 TYR 122 114 114 TYR TYR A . n A 1 123 ASN 123 115 115 ASN ASN A . n A 1 124 PHE 124 116 116 PHE PHE A . n A 1 125 GLU 125 117 117 GLU GLU A . n A 1 126 HIS 126 118 118 HIS HIS A . n A 1 127 PRO 127 119 119 PRO PRO A . n A 1 128 ILE 128 120 120 ILE ILE A . n A 1 129 SER 129 121 121 SER SER A . n A 1 130 GLY 130 122 122 GLY GLY A . n A 1 131 ASP 131 123 123 ASP ASP A . n A 1 132 GLU 132 124 124 GLU GLU A . n A 1 133 VAL 133 125 125 VAL VAL A . n A 1 134 TRP 134 126 126 TRP TRP A . n A 1 135 ASP 135 127 127 ASP ASP A . n A 1 136 ARG 136 128 128 ARG ARG A . n A 1 137 ILE 137 129 129 ILE ILE A . n A 1 138 VAL 138 130 130 VAL VAL A . n A 1 139 ASN 139 131 131 ASN ASN A . n A 1 140 SER 140 132 132 SER SER A . n A 1 141 ASP 141 133 133 ASP ASP A . n A 1 142 GLU 142 134 134 GLU GLU A . n A 1 143 GLU 143 135 135 GLU GLU A . n A 1 144 MSE 144 136 136 MSE MSE A . n A 1 145 ILE 145 137 137 ILE ILE A . n A 1 146 ASN 146 138 138 ASN ASN A . n A 1 147 PHE 147 139 139 PHE PHE A . n A 1 148 GLU 148 140 140 GLU GLU A . n A 1 149 VAL 149 141 141 VAL VAL A . n A 1 150 ASP 150 142 142 ASP ASP A . n A 1 151 LEU 151 143 143 LEU LEU A . n A 1 152 GLY 152 144 144 GLY GLY A . n A 1 153 PHE 153 145 145 PHE PHE A . n A 1 154 ASP 154 146 146 ASP ASP A . n A 1 155 LYS 155 147 147 LYS LYS A . n A 1 156 GLU 156 148 148 GLU GLU A . n A 1 157 GLU 157 149 149 GLU GLU A . n A 1 158 VAL 158 150 150 VAL VAL A . n A 1 159 LYS 159 151 151 LYS LYS A . n A 1 160 ARG 160 152 152 ARG ARG A . n A 1 161 GLU 161 153 153 GLU GLU A . n A 1 162 ILE 162 154 154 ILE ILE A . n A 1 163 LYS 163 155 155 LYS LYS A . n A 1 164 ARG 164 156 156 ARG ARG A . n A 1 165 PHE 165 157 157 PHE PHE A . n A 1 166 ILE 166 158 158 ILE ILE A . n A 1 167 GLU 167 159 159 GLU GLU A . n A 1 168 LEU 168 160 160 LEU LEU A . n A 1 169 ALA 169 161 161 ALA ALA A . n A 1 170 ARG 170 162 162 ARG ARG A . n A 1 171 ARG 171 163 163 ARG ARG A . n A 1 172 TYR 172 164 164 TYR TYR A . n A 1 173 ASN 173 165 165 ASN ASN A . n A 1 174 LEU 174 166 166 LEU LEU A . n A 1 175 LEU 175 167 167 LEU LEU A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Southeast Collaboratory for Structural Genomics' _pdbx_SG_project.initial_of_center SECSG _pdbx_SG_project.id 1 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX 1 401 401 UNX UNX A . C 3 HOH 1 201 201 HOH HOH A . C 3 HOH 2 202 202 HOH HOH A . C 3 HOH 3 203 203 HOH HOH A . C 3 HOH 4 204 204 HOH HOH A . C 3 HOH 5 205 205 HOH HOH A . C 3 HOH 6 206 206 HOH HOH A . C 3 HOH 7 207 207 HOH HOH A . C 3 HOH 8 208 208 HOH HOH A . C 3 HOH 9 209 209 HOH HOH A . C 3 HOH 10 210 210 HOH HOH A . C 3 HOH 11 211 211 HOH HOH A . C 3 HOH 12 212 212 HOH HOH A . C 3 HOH 13 213 213 HOH HOH A . C 3 HOH 14 214 214 HOH HOH A . C 3 HOH 15 215 215 HOH HOH A . C 3 HOH 16 216 216 HOH HOH A . C 3 HOH 17 217 217 HOH HOH A . C 3 HOH 18 218 218 HOH HOH A . C 3 HOH 19 219 219 HOH HOH A . C 3 HOH 20 220 220 HOH HOH A . C 3 HOH 21 221 221 HOH HOH A . C 3 HOH 22 222 222 HOH HOH A . C 3 HOH 23 223 223 HOH HOH A . C 3 HOH 24 224 224 HOH HOH A . C 3 HOH 25 225 225 HOH HOH A . C 3 HOH 26 226 226 HOH HOH A . C 3 HOH 27 227 227 HOH HOH A . C 3 HOH 28 228 228 HOH HOH A . C 3 HOH 29 229 229 HOH HOH A . C 3 HOH 30 230 230 HOH HOH A . C 3 HOH 31 231 231 HOH HOH A . C 3 HOH 32 232 232 HOH HOH A . C 3 HOH 33 233 233 HOH HOH A . C 3 HOH 34 234 234 HOH HOH A . C 3 HOH 35 235 235 HOH HOH A . C 3 HOH 36 236 236 HOH HOH A . C 3 HOH 37 237 237 HOH HOH A . C 3 HOH 38 238 238 HOH HOH A . C 3 HOH 39 239 239 HOH HOH A . C 3 HOH 40 240 240 HOH HOH A . C 3 HOH 41 241 241 HOH HOH A . C 3 HOH 42 242 242 HOH HOH A . C 3 HOH 43 243 243 HOH HOH A . C 3 HOH 44 244 244 HOH HOH A . C 3 HOH 45 245 245 HOH HOH A . C 3 HOH 46 246 246 HOH HOH A . C 3 HOH 47 247 247 HOH HOH A . C 3 HOH 48 248 248 HOH HOH A . C 3 HOH 49 249 249 HOH HOH A . C 3 HOH 50 250 250 HOH HOH A . C 3 HOH 51 251 251 HOH HOH A . C 3 HOH 52 252 252 HOH HOH A . C 3 HOH 53 253 253 HOH HOH A . C 3 HOH 54 254 254 HOH HOH A . C 3 HOH 55 255 255 HOH HOH A . C 3 HOH 56 256 256 HOH HOH A . C 3 HOH 57 257 257 HOH HOH A . C 3 HOH 58 258 258 HOH HOH A . C 3 HOH 59 259 259 HOH HOH A . C 3 HOH 60 260 260 HOH HOH A . C 3 HOH 61 261 261 HOH HOH A . C 3 HOH 62 262 262 HOH HOH A . C 3 HOH 63 263 263 HOH HOH A . C 3 HOH 64 264 264 HOH HOH A . C 3 HOH 65 265 265 HOH HOH A . C 3 HOH 66 266 266 HOH HOH A . C 3 HOH 67 267 267 HOH HOH A . C 3 HOH 68 268 268 HOH HOH A . C 3 HOH 69 269 269 HOH HOH A . C 3 HOH 70 270 270 HOH HOH A . C 3 HOH 71 271 271 HOH HOH A . C 3 HOH 72 272 272 HOH HOH A . C 3 HOH 73 273 273 HOH HOH A . C 3 HOH 74 274 274 HOH HOH A . C 3 HOH 75 275 275 HOH HOH A . C 3 HOH 76 276 276 HOH HOH A . C 3 HOH 77 277 277 HOH HOH A . C 3 HOH 78 278 278 HOH HOH A . C 3 HOH 79 279 279 HOH HOH A . C 3 HOH 80 280 280 HOH HOH A . C 3 HOH 81 281 281 HOH HOH A . C 3 HOH 82 282 282 HOH HOH A . C 3 HOH 83 283 283 HOH HOH A . C 3 HOH 84 284 284 HOH HOH A . C 3 HOH 85 285 285 HOH HOH A . C 3 HOH 86 286 286 HOH HOH A . C 3 HOH 87 287 287 HOH HOH A . C 3 HOH 88 288 288 HOH HOH A . C 3 HOH 89 289 289 HOH HOH A . C 3 HOH 90 290 290 HOH HOH A . C 3 HOH 91 291 291 HOH HOH A . C 3 HOH 92 292 292 HOH HOH A . C 3 HOH 93 293 293 HOH HOH A . C 3 HOH 94 294 294 HOH HOH A . C 3 HOH 95 295 295 HOH HOH A . C 3 HOH 96 296 296 HOH HOH A . C 3 HOH 97 297 297 HOH HOH A . C 3 HOH 98 298 298 HOH HOH A . C 3 HOH 99 299 299 HOH HOH A . C 3 HOH 100 300 300 HOH HOH A . C 3 HOH 101 301 301 HOH HOH A . C 3 HOH 102 302 302 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 10 A MSE 2 ? MET SELENOMETHIONINE 2 A MSE 61 A MSE 53 ? MET SELENOMETHIONINE 3 A MSE 144 A MSE 136 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2170 ? 2 MORE -24 ? 2 'SSA (A^2)' 15470 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 109.1340000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-02-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' # loop_ _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom 20.000 8.22 470 0.42 8.22 5.33 764 0.44 5.33 4.21 968 0.40 4.21 3.59 1125 0.44 3.59 3.18 1254 0.45 3.18 2.88 1367 0.41 2.88 2.66 1487 0.38 2.66 2.48 1574 0.28 # _phasing.method sad # _phasing_MAD.entry_id 1YB3 _phasing_MAD.pdbx_d_res_high 2.400 _phasing_MAD.pdbx_d_res_low 20.000 _phasing_MAD.pdbx_reflns 9009 _phasing_MAD.pdbx_fom 0.39 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 SOLVE 2.06 28-Dec-2003 program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 RESOLVE 2.06 28-Dec-2003 program 'Terwilliger, T. C' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 REFMAC refmac_5.2.0005 24/04/2001 program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 5 PDB_EXTRACT 1.0 02/20/2004 program H.Yang sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C/C++ ? 6 MAR345 . ? ? ? ? 'data collection' ? ? ? 7 ISAS . ? ? ? ? phasing ? ? ? 8 ARP/wARP . ? ? ? ? 'model building' ? ? ? 9 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOMOLECULE THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN. THE BIOLOGICAL UNIT IS UNKNOWN. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 111 ? ? -107.56 68.28 2 1 PHE A 145 ? ? -97.78 44.94 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 4 ? CD ? A LYS 12 CD 2 1 Y 1 A LYS 4 ? CE ? A LYS 12 CE 3 1 Y 1 A LYS 4 ? NZ ? A LYS 12 NZ 4 1 Y 1 A GLU 5 ? CG ? A GLU 13 CG 5 1 Y 1 A GLU 5 ? CD ? A GLU 13 CD 6 1 Y 1 A GLU 5 ? OE1 ? A GLU 13 OE1 7 1 Y 1 A GLU 5 ? OE2 ? A GLU 13 OE2 8 1 Y 1 A LYS 49 ? CD ? A LYS 57 CD 9 1 Y 1 A LYS 49 ? CE ? A LYS 57 CE 10 1 Y 1 A LYS 49 ? NZ ? A LYS 57 NZ 11 1 Y 1 A ARG 96 ? NE ? A ARG 104 NE 12 1 Y 1 A ARG 96 ? CZ ? A ARG 104 CZ 13 1 Y 1 A ARG 96 ? NH1 ? A ARG 104 NH1 14 1 Y 1 A ARG 96 ? NH2 ? A ARG 104 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA -7 ? A ALA 1 2 1 Y 1 A HIS -6 ? A HIS 2 3 1 Y 1 A HIS -5 ? A HIS 3 4 1 Y 1 A HIS -4 ? A HIS 4 5 1 Y 1 A HIS -3 ? A HIS 5 6 1 Y 1 A HIS -2 ? A HIS 6 7 1 Y 1 A HIS -1 ? A HIS 7 8 1 Y 1 A GLY 0 ? A GLY 8 9 1 Y 1 A SER 1 ? A SER 9 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN ATOM OR ION' UNX 3 water HOH #