data_1YBC # _entry.id 1YBC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YBC pdb_00001ybc 10.2210/pdb1ybc/pdb NDB AD0044 ? ? RCSB RCSB031338 ? ? WWPDB D_1000031338 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1Y7F ;Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-[hydroxy(methyleneamino)oxy]ethyl] Thymidine (T*) ; unspecified PDB 1Y84 ;Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(imidazolyl)ethyl] Thymidine (T*) ; unspecified PDB 1Y86 ;Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(fluoro)ethyl] Thymidine (T*) ; unspecified PDB 1Y8L ;Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(trifluoro)ethyl] Thymidine (T*) ; unspecified PDB 1Y8V ;Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propyl Thymidine (T*) ; unspecified PDB 1Y9S ;Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propargyl Thymidine (T*) ; unspecified PDB 1WV5 ;X-RAY STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-BUTYL THYMINE IN PLACE OF T6, MG-FORM ; unspecified PDB 1WV6 ;X-RAY STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-BUTYL THYMINE IN PLACE OF T6, SR-FORM ; unspecified PDB 1Y9F ;Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-allyl Thymidine (T*) ; unspecified PDB 1YB9 ;Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(N,N-dimethylaminooxy)ethyl] Thymidine (T*) ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YBC _pdbx_database_status.recvd_initial_deposition_date 2004-12-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Egli, M.' 1 'Minasov, G.' 2 'Tereshko, V.' 3 'Pallan, P.S.' 4 'Teplova, M.' 5 'Inamati, G.B.' 6 'Lesnik, E.A.' 7 'Owens, S.R.' 8 'Ross, B.S.' 9 'Prakash, T.P.' 10 'Manoharan, M.' 11 # _citation.id primary _citation.title ;Probing the Influence of Stereoelectronic Effects on the Biophysical Properties of Oligonucleotides: Comprehensive Analysis of the RNA Affinity, Nuclease Resistance, and Crystal Structure of Ten 2'-O-Ribonucleic Acid Modifications. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 9045 _citation.page_last 9057 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15966728 _citation.pdbx_database_id_DOI 10.1021/bi050574m # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Egli, M.' 1 ? primary 'Minasov, G.' 2 ? primary 'Tereshko, V.' 3 ? primary 'Pallan, P.S.' 4 ? primary 'Teplova, M.' 5 ? primary 'Inamati, G.B.' 6 ? primary 'Lesnik, E.A.' 7 ? primary 'Owens, S.R.' 8 ? primary 'Ross, B.S.' 9 ? primary 'Prakash, T.P.' 10 ? primary 'Manoharan, M.' 11 ? # _cell.entry_id 1YBC _cell.length_a 25.063 _cell.length_b 44.365 _cell.length_c 45.458 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YBC _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*TP*AP*(BOE)P*AP*CP*GP*C)-3')" 3195.180 2 ? ? ? ? 2 non-polymer syn 'STRONTIUM ION' 87.620 1 ? ? ? ? 3 water nat water 18.015 98 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DT)(DA)(BOE)(DA)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGTATACGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 BOE n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DC n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1YBC _struct_ref.pdbx_db_accession 1YBC _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YBC A 1 ? 10 ? 1YBC 1 ? 10 ? 1 10 2 1 1YBC B 1 ? 10 ? 1YBC 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BOE 'RNA linking' n ;2'-O-[2-(BENZYLOXY)ETHYL] THYMIDINE-5'-MONOPHOSPHATE ; ? 'C19 H25 N2 O10 P' 472.383 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 # _exptl.entry_id 1YBC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '10%MPD, 40mM Na-Cacodilate, 12 mM Spermine, 80mM SrCL2, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 Na-Cacodilate ? ? ? 1 3 1 Spermine ? ? ? 1 4 1 SrCL2 ? ? ? 1 5 1 H2O ? ? ? 1 6 2 MPD ? ? ? 1 7 2 Na-Cacodilate ? ? ? 1 8 2 SrCL2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1998-12-30 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1YBC _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 25.0 _reflns.number_all 5065 _reflns.number_obs 5065 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.348 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.5 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 92.4 _reflns_shell.Rmerge_I_obs 0.348 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.2 _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 450 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1YBC _refine.ls_d_res_high 1.80 _refine.ls_d_res_low 20.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 4851 _refine.ls_number_reflns_obs 4851 _refine.ls_number_reflns_R_free 532 _refine.ls_percent_reflns_obs 96.6 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.1696 _refine.ls_R_factor_R_free 0.2128 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'pdb entry 410D' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.B_iso_mean 25.3 _refine.aniso_B[1][1] -0.336 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] 2.134 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] -1.797 _refine.details 'Conjugate gradient refinement using maximum likelihood target for amplitudes' _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 426 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 527 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.28 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.86 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.2281 _refine_ls_shell.percent_reflns_obs 78.8 _refine_ls_shell.R_factor_R_free 0.2634 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 38 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1YBC _struct.title ;Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(benzyloxy)ethyl] Thymidine (T*) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YBC _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;A-DNA, O2'-modification, decamer, DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details 'Chains A and B form duplex' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 5 "O3'" ? ? ? 1_555 A BOE 6 P ? ? A DA 5 A BOE 6 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale2 covale both ? A BOE 6 "O3'" ? ? ? 1_555 A DA 7 P ? ? A BOE 6 A DA 7 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale3 covale both ? B DA 5 "O3'" ? ? ? 1_555 B BOE 6 P ? ? B DA 15 B BOE 16 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale4 covale both ? B BOE 6 "O3'" ? ? ? 1_555 B DA 7 P ? ? B BOE 16 B DA 17 1_555 ? ? ? ? ? ? ? 1.594 ? ? metalc1 metalc ? ? A DG 3 O6 ? ? ? 1_555 C SR . SR ? ? A DG 3 A SR 100 1_555 ? ? ? ? ? ? ? 2.694 ? ? metalc2 metalc ? ? C SR . SR ? ? ? 1_555 D HOH . O ? ? A SR 100 A HOH 101 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc3 metalc ? ? C SR . SR ? ? ? 1_555 D HOH . O ? ? A SR 100 A HOH 104 1_555 ? ? ? ? ? ? ? 2.685 ? ? metalc4 metalc ? ? C SR . SR ? ? ? 1_555 D HOH . O ? ? A SR 100 A HOH 105 1_555 ? ? ? ? ? ? ? 2.539 ? ? metalc5 metalc ? ? C SR . SR ? ? ? 1_555 E HOH . O ? ? A SR 100 B HOH 102 1_555 ? ? ? ? ? ? ? 2.610 ? ? metalc6 metalc ? ? C SR . SR ? ? ? 1_555 E HOH . O ? ? A SR 100 B HOH 103 1_555 ? ? ? ? ? ? ? 2.855 ? ? metalc7 metalc ? ? C SR . SR ? ? ? 1_555 E HOH . O ? ? A SR 100 B HOH 106 1_555 ? ? ? ? ? ? ? 2.623 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B BOE 6 N3 ? ? A DA 5 B BOE 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B BOE 6 O4 ? ? A DA 5 B BOE 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A BOE 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A BOE 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A BOE 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A BOE 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SR _struct_site.pdbx_auth_seq_id 100 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE SR A 100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 DG A 3 ? DG A 3 . ? 1_555 ? 2 AC1 7 HOH D . ? HOH A 101 . ? 1_555 ? 3 AC1 7 HOH D . ? HOH A 104 . ? 1_555 ? 4 AC1 7 HOH D . ? HOH A 105 . ? 1_555 ? 5 AC1 7 HOH E . ? HOH B 102 . ? 1_555 ? 6 AC1 7 HOH E . ? HOH B 103 . ? 1_555 ? 7 AC1 7 HOH E . ? HOH B 106 . ? 1_555 ? # _database_PDB_matrix.entry_id 1YBC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1YBC _atom_sites.fract_transf_matrix[1][1] 0.039899 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022540 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021998 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SR # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 BOE 6 6 6 BOE BOE A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DC 10 10 10 DC C A . n B 1 1 DG 1 11 11 DG G B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DT 4 14 14 DT T B . n B 1 5 DA 5 15 15 DA A B . n B 1 6 BOE 6 16 16 BOE BOE B . n B 1 7 DA 7 17 17 DA A B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DC 10 20 20 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SR 1 100 100 SR SR A . D 3 HOH 1 101 101 HOH HOH A . D 3 HOH 2 104 104 HOH HOH A . D 3 HOH 3 105 105 HOH HOH A . D 3 HOH 4 108 108 HOH HOH A . D 3 HOH 5 109 109 HOH HOH A . D 3 HOH 6 110 110 HOH HOH A . D 3 HOH 7 111 111 HOH HOH A . D 3 HOH 8 112 112 HOH HOH A . D 3 HOH 9 115 115 HOH HOH A . D 3 HOH 10 116 116 HOH HOH A . D 3 HOH 11 119 119 HOH HOH A . D 3 HOH 12 123 123 HOH HOH A . D 3 HOH 13 125 125 HOH HOH A . D 3 HOH 14 126 126 HOH HOH A . D 3 HOH 15 128 128 HOH HOH A . D 3 HOH 16 130 130 HOH HOH A . D 3 HOH 17 131 131 HOH HOH A . D 3 HOH 18 132 132 HOH HOH A . D 3 HOH 19 133 133 HOH HOH A . D 3 HOH 20 134 134 HOH HOH A . D 3 HOH 21 135 135 HOH HOH A . D 3 HOH 22 136 136 HOH HOH A . D 3 HOH 23 137 137 HOH HOH A . D 3 HOH 24 139 139 HOH HOH A . D 3 HOH 25 140 140 HOH HOH A . D 3 HOH 26 142 142 HOH HOH A . D 3 HOH 27 143 143 HOH HOH A . D 3 HOH 28 144 144 HOH HOH A . D 3 HOH 29 145 145 HOH HOH A . D 3 HOH 30 146 146 HOH HOH A . D 3 HOH 31 147 147 HOH HOH A . D 3 HOH 32 148 148 HOH HOH A . D 3 HOH 33 149 149 HOH HOH A . D 3 HOH 34 150 150 HOH HOH A . D 3 HOH 35 152 152 HOH HOH A . D 3 HOH 36 159 159 HOH HOH A . D 3 HOH 37 162 162 HOH HOH A . D 3 HOH 38 163 163 HOH HOH A . D 3 HOH 39 173 173 HOH HOH A . D 3 HOH 40 175 175 HOH HOH A . D 3 HOH 41 176 176 HOH HOH A . D 3 HOH 42 179 179 HOH HOH A . D 3 HOH 43 181 181 HOH HOH A . D 3 HOH 44 182 182 HOH HOH A . D 3 HOH 45 183 183 HOH HOH A . D 3 HOH 46 186 186 HOH HOH A . D 3 HOH 47 187 187 HOH HOH A . D 3 HOH 48 188 188 HOH HOH A . D 3 HOH 49 189 189 HOH HOH A . D 3 HOH 50 190 190 HOH HOH A . D 3 HOH 51 194 194 HOH HOH A . D 3 HOH 52 195 195 HOH HOH A . D 3 HOH 53 198 198 HOH HOH A . E 3 HOH 1 102 102 HOH HOH B . E 3 HOH 2 103 103 HOH HOH B . E 3 HOH 3 106 106 HOH HOH B . E 3 HOH 4 107 107 HOH HOH B . E 3 HOH 5 113 113 HOH HOH B . E 3 HOH 6 114 114 HOH HOH B . E 3 HOH 7 117 117 HOH HOH B . E 3 HOH 8 118 118 HOH HOH B . E 3 HOH 9 120 120 HOH HOH B . E 3 HOH 10 121 121 HOH HOH B . E 3 HOH 11 122 122 HOH HOH B . E 3 HOH 12 124 124 HOH HOH B . E 3 HOH 13 127 127 HOH HOH B . E 3 HOH 14 129 129 HOH HOH B . E 3 HOH 15 138 138 HOH HOH B . E 3 HOH 16 141 141 HOH HOH B . E 3 HOH 17 151 151 HOH HOH B . E 3 HOH 18 153 153 HOH HOH B . E 3 HOH 19 154 154 HOH HOH B . E 3 HOH 20 155 155 HOH HOH B . E 3 HOH 21 156 156 HOH HOH B . E 3 HOH 22 157 157 HOH HOH B . E 3 HOH 23 158 158 HOH HOH B . E 3 HOH 24 160 160 HOH HOH B . E 3 HOH 25 161 161 HOH HOH B . E 3 HOH 26 164 164 HOH HOH B . E 3 HOH 27 165 165 HOH HOH B . E 3 HOH 28 166 166 HOH HOH B . E 3 HOH 29 167 167 HOH HOH B . E 3 HOH 30 168 168 HOH HOH B . E 3 HOH 31 169 169 HOH HOH B . E 3 HOH 32 170 170 HOH HOH B . E 3 HOH 33 171 171 HOH HOH B . E 3 HOH 34 172 172 HOH HOH B . E 3 HOH 35 174 174 HOH HOH B . E 3 HOH 36 177 177 HOH HOH B . E 3 HOH 37 178 178 HOH HOH B . E 3 HOH 38 180 180 HOH HOH B . E 3 HOH 39 184 184 HOH HOH B . E 3 HOH 40 185 185 HOH HOH B . E 3 HOH 41 191 191 HOH HOH B . E 3 HOH 42 192 192 HOH HOH B . E 3 HOH 43 193 193 HOH HOH B . E 3 HOH 44 196 196 HOH HOH B . E 3 HOH 45 197 197 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BOE 6 A BOE 6 ? DT ? 2 B BOE 6 B BOE 16 ? DT ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 3 ? A DG 3 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? D HOH . ? A HOH 101 ? 1_555 73.0 ? 2 O6 ? A DG 3 ? A DG 3 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? D HOH . ? A HOH 104 ? 1_555 97.5 ? 3 O ? D HOH . ? A HOH 101 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? D HOH . ? A HOH 104 ? 1_555 120.1 ? 4 O6 ? A DG 3 ? A DG 3 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? D HOH . ? A HOH 105 ? 1_555 75.3 ? 5 O ? D HOH . ? A HOH 101 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? D HOH . ? A HOH 105 ? 1_555 146.7 ? 6 O ? D HOH . ? A HOH 104 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? D HOH . ? A HOH 105 ? 1_555 73.7 ? 7 O6 ? A DG 3 ? A DG 3 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 102 ? 1_555 131.7 ? 8 O ? D HOH . ? A HOH 101 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 102 ? 1_555 112.9 ? 9 O ? D HOH . ? A HOH 104 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 102 ? 1_555 115.9 ? 10 O ? D HOH . ? A HOH 105 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 102 ? 1_555 81.6 ? 11 O6 ? A DG 3 ? A DG 3 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 103 ? 1_555 152.7 ? 12 O ? D HOH . ? A HOH 101 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 103 ? 1_555 88.2 ? 13 O ? D HOH . ? A HOH 104 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 103 ? 1_555 74.7 ? 14 O ? D HOH . ? A HOH 105 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 103 ? 1_555 125.1 ? 15 O ? E HOH . ? B HOH 102 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 103 ? 1_555 73.5 ? 16 O6 ? A DG 3 ? A DG 3 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 106 ? 1_555 84.4 ? 17 O ? D HOH . ? A HOH 101 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 106 ? 1_555 68.1 ? 18 O ? D HOH . ? A HOH 104 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 106 ? 1_555 171.8 ? 19 O ? D HOH . ? A HOH 105 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 106 ? 1_555 99.2 ? 20 O ? E HOH . ? B HOH 102 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 106 ? 1_555 58.1 ? 21 O ? E HOH . ? B HOH 103 ? 1_555 SR ? C SR . ? A SR 100 ? 1_555 O ? E HOH . ? B HOH 106 ? 1_555 107.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-06-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.conn_type_id' 19 4 'Structure model' '_struct_conn.id' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement . ? 4 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 19 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.056 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BOE P P N N 1 BOE OP1 O N N 2 BOE OP2 O N N 3 BOE "O5'" O N N 4 BOE "C5'" C N N 5 BOE "C4'" C N R 6 BOE "O4'" O N N 7 BOE "C1'" C N R 8 BOE N1 N N N 9 BOE C6 C N N 10 BOE C2 C N N 11 BOE O2 O N N 12 BOE N3 N N N 13 BOE C4 C N N 14 BOE O4 O N N 15 BOE C5 C N N 16 BOE C5M C N N 17 BOE "C2'" C N R 18 BOE "O2'" O N N 19 BOE "CB'" C N N 20 BOE "CC'" C N N 21 BOE "OD'" O N N 22 BOE "CE'" C N N 23 BOE "CF'" C Y N 24 BOE "CG'" C Y N 25 BOE "CH'" C Y N 26 BOE "CI'" C Y N 27 BOE "CJ'" C Y N 28 BOE "CK'" C Y N 29 BOE "C3'" C N R 30 BOE "O3'" O N N 31 BOE OP3 O N N 32 BOE HOP2 H N N 33 BOE "H5'" H N N 34 BOE "H5''" H N N 35 BOE "H4'" H N N 36 BOE "H1'" H N N 37 BOE H6 H N N 38 BOE HN3 H N N 39 BOE H71 H N N 40 BOE H72 H N N 41 BOE H73 H N N 42 BOE "H2'" H N N 43 BOE "HB'1" H N N 44 BOE "HB'2" H N N 45 BOE "HC'1" H N N 46 BOE "HC'2" H N N 47 BOE "HE'1" H N N 48 BOE "HE'2" H N N 49 BOE "HG'" H N N 50 BOE "HH'" H N N 51 BOE "HI'" H N N 52 BOE "HJ'" H N N 53 BOE "HK'" H N N 54 BOE "H3'" H N N 55 BOE "HO3'" H N N 56 BOE HOP3 H N N 57 DA OP3 O N N 58 DA P P N N 59 DA OP1 O N N 60 DA OP2 O N N 61 DA "O5'" O N N 62 DA "C5'" C N N 63 DA "C4'" C N R 64 DA "O4'" O N N 65 DA "C3'" C N S 66 DA "O3'" O N N 67 DA "C2'" C N N 68 DA "C1'" C N R 69 DA N9 N Y N 70 DA C8 C Y N 71 DA N7 N Y N 72 DA C5 C Y N 73 DA C6 C Y N 74 DA N6 N N N 75 DA N1 N Y N 76 DA C2 C Y N 77 DA N3 N Y N 78 DA C4 C Y N 79 DA HOP3 H N N 80 DA HOP2 H N N 81 DA "H5'" H N N 82 DA "H5''" H N N 83 DA "H4'" H N N 84 DA "H3'" H N N 85 DA "HO3'" H N N 86 DA "H2'" H N N 87 DA "H2''" H N N 88 DA "H1'" H N N 89 DA H8 H N N 90 DA H61 H N N 91 DA H62 H N N 92 DA H2 H N N 93 DC OP3 O N N 94 DC P P N N 95 DC OP1 O N N 96 DC OP2 O N N 97 DC "O5'" O N N 98 DC "C5'" C N N 99 DC "C4'" C N R 100 DC "O4'" O N N 101 DC "C3'" C N S 102 DC "O3'" O N N 103 DC "C2'" C N N 104 DC "C1'" C N R 105 DC N1 N N N 106 DC C2 C N N 107 DC O2 O N N 108 DC N3 N N N 109 DC C4 C N N 110 DC N4 N N N 111 DC C5 C N N 112 DC C6 C N N 113 DC HOP3 H N N 114 DC HOP2 H N N 115 DC "H5'" H N N 116 DC "H5''" H N N 117 DC "H4'" H N N 118 DC "H3'" H N N 119 DC "HO3'" H N N 120 DC "H2'" H N N 121 DC "H2''" H N N 122 DC "H1'" H N N 123 DC H41 H N N 124 DC H42 H N N 125 DC H5 H N N 126 DC H6 H N N 127 DG OP3 O N N 128 DG P P N N 129 DG OP1 O N N 130 DG OP2 O N N 131 DG "O5'" O N N 132 DG "C5'" C N N 133 DG "C4'" C N R 134 DG "O4'" O N N 135 DG "C3'" C N S 136 DG "O3'" O N N 137 DG "C2'" C N N 138 DG "C1'" C N R 139 DG N9 N Y N 140 DG C8 C Y N 141 DG N7 N Y N 142 DG C5 C Y N 143 DG C6 C N N 144 DG O6 O N N 145 DG N1 N N N 146 DG C2 C N N 147 DG N2 N N N 148 DG N3 N N N 149 DG C4 C Y N 150 DG HOP3 H N N 151 DG HOP2 H N N 152 DG "H5'" H N N 153 DG "H5''" H N N 154 DG "H4'" H N N 155 DG "H3'" H N N 156 DG "HO3'" H N N 157 DG "H2'" H N N 158 DG "H2''" H N N 159 DG "H1'" H N N 160 DG H8 H N N 161 DG H1 H N N 162 DG H21 H N N 163 DG H22 H N N 164 DT OP3 O N N 165 DT P P N N 166 DT OP1 O N N 167 DT OP2 O N N 168 DT "O5'" O N N 169 DT "C5'" C N N 170 DT "C4'" C N R 171 DT "O4'" O N N 172 DT "C3'" C N S 173 DT "O3'" O N N 174 DT "C2'" C N N 175 DT "C1'" C N R 176 DT N1 N N N 177 DT C2 C N N 178 DT O2 O N N 179 DT N3 N N N 180 DT C4 C N N 181 DT O4 O N N 182 DT C5 C N N 183 DT C7 C N N 184 DT C6 C N N 185 DT HOP3 H N N 186 DT HOP2 H N N 187 DT "H5'" H N N 188 DT "H5''" H N N 189 DT "H4'" H N N 190 DT "H3'" H N N 191 DT "HO3'" H N N 192 DT "H2'" H N N 193 DT "H2''" H N N 194 DT "H1'" H N N 195 DT H3 H N N 196 DT H71 H N N 197 DT H72 H N N 198 DT H73 H N N 199 DT H6 H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 SR SR SR N N 204 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BOE P OP1 doub N N 1 BOE P OP2 sing N N 2 BOE P "O5'" sing N N 3 BOE P OP3 sing N N 4 BOE OP2 HOP2 sing N N 5 BOE "O5'" "C5'" sing N N 6 BOE "C5'" "C4'" sing N N 7 BOE "C5'" "H5'" sing N N 8 BOE "C5'" "H5''" sing N N 9 BOE "C4'" "O4'" sing N N 10 BOE "C4'" "C3'" sing N N 11 BOE "C4'" "H4'" sing N N 12 BOE "O4'" "C1'" sing N N 13 BOE "C1'" N1 sing N N 14 BOE "C1'" "C2'" sing N N 15 BOE "C1'" "H1'" sing N N 16 BOE N1 C6 sing N N 17 BOE N1 C2 sing N N 18 BOE C6 C5 doub N N 19 BOE C6 H6 sing N N 20 BOE C2 O2 doub N N 21 BOE C2 N3 sing N N 22 BOE N3 C4 sing N N 23 BOE N3 HN3 sing N N 24 BOE C4 O4 doub N N 25 BOE C4 C5 sing N N 26 BOE C5 C5M sing N N 27 BOE C5M H71 sing N N 28 BOE C5M H72 sing N N 29 BOE C5M H73 sing N N 30 BOE "C2'" "O2'" sing N N 31 BOE "C2'" "C3'" sing N N 32 BOE "C2'" "H2'" sing N N 33 BOE "O2'" "CB'" sing N N 34 BOE "CB'" "CC'" sing N N 35 BOE "CB'" "HB'1" sing N N 36 BOE "CB'" "HB'2" sing N N 37 BOE "CC'" "OD'" sing N N 38 BOE "CC'" "HC'1" sing N N 39 BOE "CC'" "HC'2" sing N N 40 BOE "OD'" "CE'" sing N N 41 BOE "CE'" "CF'" sing N N 42 BOE "CE'" "HE'1" sing N N 43 BOE "CE'" "HE'2" sing N N 44 BOE "CF'" "CG'" doub Y N 45 BOE "CF'" "CK'" sing Y N 46 BOE "CG'" "CH'" sing Y N 47 BOE "CG'" "HG'" sing N N 48 BOE "CH'" "CI'" doub Y N 49 BOE "CH'" "HH'" sing N N 50 BOE "CI'" "CJ'" sing Y N 51 BOE "CI'" "HI'" sing N N 52 BOE "CJ'" "CK'" doub Y N 53 BOE "CJ'" "HJ'" sing N N 54 BOE "CK'" "HK'" sing N N 55 BOE "C3'" "O3'" sing N N 56 BOE "C3'" "H3'" sing N N 57 BOE "O3'" "HO3'" sing N N 58 BOE OP3 HOP3 sing N N 59 DA OP3 P sing N N 60 DA OP3 HOP3 sing N N 61 DA P OP1 doub N N 62 DA P OP2 sing N N 63 DA P "O5'" sing N N 64 DA OP2 HOP2 sing N N 65 DA "O5'" "C5'" sing N N 66 DA "C5'" "C4'" sing N N 67 DA "C5'" "H5'" sing N N 68 DA "C5'" "H5''" sing N N 69 DA "C4'" "O4'" sing N N 70 DA "C4'" "C3'" sing N N 71 DA "C4'" "H4'" sing N N 72 DA "O4'" "C1'" sing N N 73 DA "C3'" "O3'" sing N N 74 DA "C3'" "C2'" sing N N 75 DA "C3'" "H3'" sing N N 76 DA "O3'" "HO3'" sing N N 77 DA "C2'" "C1'" sing N N 78 DA "C2'" "H2'" sing N N 79 DA "C2'" "H2''" sing N N 80 DA "C1'" N9 sing N N 81 DA "C1'" "H1'" sing N N 82 DA N9 C8 sing Y N 83 DA N9 C4 sing Y N 84 DA C8 N7 doub Y N 85 DA C8 H8 sing N N 86 DA N7 C5 sing Y N 87 DA C5 C6 sing Y N 88 DA C5 C4 doub Y N 89 DA C6 N6 sing N N 90 DA C6 N1 doub Y N 91 DA N6 H61 sing N N 92 DA N6 H62 sing N N 93 DA N1 C2 sing Y N 94 DA C2 N3 doub Y N 95 DA C2 H2 sing N N 96 DA N3 C4 sing Y N 97 DC OP3 P sing N N 98 DC OP3 HOP3 sing N N 99 DC P OP1 doub N N 100 DC P OP2 sing N N 101 DC P "O5'" sing N N 102 DC OP2 HOP2 sing N N 103 DC "O5'" "C5'" sing N N 104 DC "C5'" "C4'" sing N N 105 DC "C5'" "H5'" sing N N 106 DC "C5'" "H5''" sing N N 107 DC "C4'" "O4'" sing N N 108 DC "C4'" "C3'" sing N N 109 DC "C4'" "H4'" sing N N 110 DC "O4'" "C1'" sing N N 111 DC "C3'" "O3'" sing N N 112 DC "C3'" "C2'" sing N N 113 DC "C3'" "H3'" sing N N 114 DC "O3'" "HO3'" sing N N 115 DC "C2'" "C1'" sing N N 116 DC "C2'" "H2'" sing N N 117 DC "C2'" "H2''" sing N N 118 DC "C1'" N1 sing N N 119 DC "C1'" "H1'" sing N N 120 DC N1 C2 sing N N 121 DC N1 C6 sing N N 122 DC C2 O2 doub N N 123 DC C2 N3 sing N N 124 DC N3 C4 doub N N 125 DC C4 N4 sing N N 126 DC C4 C5 sing N N 127 DC N4 H41 sing N N 128 DC N4 H42 sing N N 129 DC C5 C6 doub N N 130 DC C5 H5 sing N N 131 DC C6 H6 sing N N 132 DG OP3 P sing N N 133 DG OP3 HOP3 sing N N 134 DG P OP1 doub N N 135 DG P OP2 sing N N 136 DG P "O5'" sing N N 137 DG OP2 HOP2 sing N N 138 DG "O5'" "C5'" sing N N 139 DG "C5'" "C4'" sing N N 140 DG "C5'" "H5'" sing N N 141 DG "C5'" "H5''" sing N N 142 DG "C4'" "O4'" sing N N 143 DG "C4'" "C3'" sing N N 144 DG "C4'" "H4'" sing N N 145 DG "O4'" "C1'" sing N N 146 DG "C3'" "O3'" sing N N 147 DG "C3'" "C2'" sing N N 148 DG "C3'" "H3'" sing N N 149 DG "O3'" "HO3'" sing N N 150 DG "C2'" "C1'" sing N N 151 DG "C2'" "H2'" sing N N 152 DG "C2'" "H2''" sing N N 153 DG "C1'" N9 sing N N 154 DG "C1'" "H1'" sing N N 155 DG N9 C8 sing Y N 156 DG N9 C4 sing Y N 157 DG C8 N7 doub Y N 158 DG C8 H8 sing N N 159 DG N7 C5 sing Y N 160 DG C5 C6 sing N N 161 DG C5 C4 doub Y N 162 DG C6 O6 doub N N 163 DG C6 N1 sing N N 164 DG N1 C2 sing N N 165 DG N1 H1 sing N N 166 DG C2 N2 sing N N 167 DG C2 N3 doub N N 168 DG N2 H21 sing N N 169 DG N2 H22 sing N N 170 DG N3 C4 sing N N 171 DT OP3 P sing N N 172 DT OP3 HOP3 sing N N 173 DT P OP1 doub N N 174 DT P OP2 sing N N 175 DT P "O5'" sing N N 176 DT OP2 HOP2 sing N N 177 DT "O5'" "C5'" sing N N 178 DT "C5'" "C4'" sing N N 179 DT "C5'" "H5'" sing N N 180 DT "C5'" "H5''" sing N N 181 DT "C4'" "O4'" sing N N 182 DT "C4'" "C3'" sing N N 183 DT "C4'" "H4'" sing N N 184 DT "O4'" "C1'" sing N N 185 DT "C3'" "O3'" sing N N 186 DT "C3'" "C2'" sing N N 187 DT "C3'" "H3'" sing N N 188 DT "O3'" "HO3'" sing N N 189 DT "C2'" "C1'" sing N N 190 DT "C2'" "H2'" sing N N 191 DT "C2'" "H2''" sing N N 192 DT "C1'" N1 sing N N 193 DT "C1'" "H1'" sing N N 194 DT N1 C2 sing N N 195 DT N1 C6 sing N N 196 DT C2 O2 doub N N 197 DT C2 N3 sing N N 198 DT N3 C4 sing N N 199 DT N3 H3 sing N N 200 DT C4 O4 doub N N 201 DT C4 C5 sing N N 202 DT C5 C7 sing N N 203 DT C5 C6 doub N N 204 DT C7 H71 sing N N 205 DT C7 H72 sing N N 206 DT C7 H73 sing N N 207 DT C6 H6 sing N N 208 HOH O H1 sing N N 209 HOH O H2 sing N N 210 # _ndb_struct_conf_na.entry_id 1YBC _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.255 -0.186 0.195 0.697 -10.197 -1.596 1 A_DG1:DC20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.017 -0.056 0.047 2.156 -13.445 1.215 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.403 -0.136 -0.033 -8.658 -15.424 2.862 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DT 4 1_555 B DA 7 1_555 -0.107 -0.139 -0.135 -4.235 -14.753 3.324 4 A_DT4:DA17_B A 4 ? B 17 ? 20 1 1 A DA 5 1_555 B BOE 6 1_555 0.114 -0.081 0.062 -3.850 -11.950 -3.130 5 A_DA5:BOE16_B A 5 ? B 16 ? 20 1 1 A BOE 6 1_555 B DA 5 1_555 -0.163 -0.162 0.198 4.827 -11.321 0.956 6 A_BOE6:DA15_B A 6 ? B 15 ? 20 1 1 A DA 7 1_555 B DT 4 1_555 -0.071 -0.184 0.050 4.280 -13.762 2.434 7 A_DA7:DT14_B A 7 ? B 14 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.237 -0.235 -0.191 8.875 -13.631 2.565 8 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.150 -0.130 -0.063 -5.967 -10.374 3.428 9 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DC 10 1_555 B DG 1 1_555 0.085 -0.169 0.094 -4.222 6.353 -0.174 10 A_DC10:DG11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DC 2 1_555 B DG 9 1_555 0.415 -1.559 3.229 1.840 0.853 36.945 -2.570 -0.410 3.209 1.345 -2.900 36.999 1 AA_DG1DC2:DG19DC20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 0.347 -2.167 3.467 1.721 9.409 25.434 -6.867 -0.328 2.535 20.470 -3.744 27.145 2 AA_DC2DG3:DC18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DT 4 1_555 B DA 7 1_555 -1.099 -1.469 3.101 -1.539 5.445 35.976 -3.050 1.562 2.898 8.748 2.472 36.404 3 AA_DG3DT4:DA17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DT 4 1_555 B DA 7 1_555 A DA 5 1_555 B BOE 6 1_555 0.587 -1.547 3.237 1.334 20.362 25.219 -5.796 -0.856 1.604 39.418 -2.583 32.336 4 AA_DT4DA5:BOE16DA17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DA 5 1_555 B BOE 6 1_555 A BOE 6 1_555 B DA 5 1_555 0.440 -1.383 3.058 -0.104 5.197 31.249 -3.399 -0.823 2.796 9.565 0.191 31.668 5 AA_DA5BOE6:DA15BOE16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A BOE 6 1_555 B DA 5 1_555 A DA 7 1_555 B DT 4 1_555 -0.040 -1.353 3.110 1.214 13.979 31.718 -4.147 0.230 2.323 24.153 -2.097 34.610 6 AA_BOE6DA7:DT14DA15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DA 7 1_555 B DT 4 1_555 A DC 8 1_555 B DG 3 1_555 0.367 -1.504 3.235 1.791 3.078 32.779 -3.159 -0.351 3.100 5.434 -3.162 32.966 7 AA_DA7DC8:DG13DT14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.146 -1.853 3.597 0.039 11.832 29.121 -5.636 0.277 2.660 22.400 -0.075 31.385 8 AA_DC8DG9:DC12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DC 10 1_555 B DG 1 1_555 0.125 -1.752 3.290 -0.013 3.490 33.013 -3.640 -0.221 3.093 6.121 0.022 33.191 9 AA_DG9DC10:DG11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'STRONTIUM ION' SR 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 410D _pdbx_initial_refinement_model.details 'pdb entry 410D' #