data_1YCW # _entry.id 1YCW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YCW pdb_00001ycw 10.2210/pdb1ycw/pdb RCSB RCSB031386 ? ? WWPDB D_1000031386 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-12-06 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_nmr_software 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YCW _pdbx_database_status.recvd_initial_deposition_date 2004-12-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YCT 'CLUSTERED ABASIC LESIONS IN DNA: NMR SOLUTION STRUCTURE OF CLUSTERED BISTRANDED +1 ABASIC LESION' unspecified PDB 1HT4 ;Structure of a DNA duplex containing a bistrand abasic site lesion staggered in a 3'-orientation ; unspecified PDB 1HT7 ;STRUCTURE OF A DNA DUPLEX CONTAINING A BISTRAND ABASIC SITE LESION STAGGERED IN A 5'-ORIENTATION ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hazel, R.D.' 1 'de los Santos, C.' 2 # _citation.id primary _citation.title 'NMR solution structures of bistranded abasic site lesions in DNA.' _citation.journal_abbrev Biochemistry _citation.journal_volume 47 _citation.page_first 11909 _citation.page_last 11919 _citation.year 2008 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18950195 _citation.pdbx_database_id_DOI 10.1021/bi800950t # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hazel, R.D.' 1 ? primary 'Tian, K.' 2 ? primary 'de Los Santos, C.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*AP*TP*GP*(3DR)P*GP*TP*AP*CP*GP*C)-3'" 3843.488 1 ? ? ? ? 2 polymer syn "5'-D(*GP*CP*GP*TP*AP*CP*CP*(3DR)P*AP*TP*GP*CP*G)-3'" 3843.488 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DC)(DA)(DT)(DG)(3DR)(DG)(DT)(DA)(DC)(DG)(DC)' CGCATGNGTACGC A ? 2 polydeoxyribonucleotide no yes '(DG)(DC)(DG)(DT)(DA)(DC)(DC)(3DR)(DA)(DT)(DG)(DC)(DG)' GCGTACCNATGCG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DA n 1 5 DT n 1 6 DG n 1 7 3DR n 1 8 DG n 1 9 DT n 1 10 DA n 1 11 DC n 1 12 DG n 1 13 DC n 2 1 DG n 2 2 DC n 2 3 DG n 2 4 DT n 2 5 DA n 2 6 DC n 2 7 DC n 2 8 3DR n 2 9 DA n 2 10 DT n 2 11 DG n 2 12 DC n 2 13 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'RANDOMLY DESIGNED SEQUENCE CONTAINING STABLE ABASIC SITES (3DR)' 2 1 sample ? ? ? ? ? 'RANDOMLY DESIGNED SEQUENCE CONTAINING STABLE ABASIC SITES (3DR)' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3DR 'DNA linking' . "1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE" 'ABASIC DIDEOXYRIBOSE' 'C5 H11 O6 P' 198.111 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 3DR 7 7 7 3DR 3DR A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DA 10 10 10 DA A A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n A 1 13 DC 13 13 13 DC C A . n B 2 1 DG 1 14 14 DG G B . n B 2 2 DC 2 15 15 DC C B . n B 2 3 DG 3 16 16 DG G B . n B 2 4 DT 4 17 17 DT T B . n B 2 5 DA 5 18 18 DA A B . n B 2 6 DC 6 19 19 DC C B . n B 2 7 DC 7 20 20 DC C B . n B 2 8 3DR 8 21 21 3DR 3DR B . n B 2 9 DA 9 22 22 DA A B . n B 2 10 DT 10 23 23 DT T B . n B 2 11 DG 11 24 24 DG G B . n B 2 12 DC 12 25 25 DC C B . n B 2 13 DG 13 26 26 DG G B . n # _exptl.entry_id 1YCW _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1YCW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YCW _struct.title 'Clustered abasic lesions in dna: nmr solution structures of clustered bistranded-1 abasic lesion' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YCW _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DOUBLE HELIX, ABASIC SITES, CLUSTERED DAMAGE, EXTRUDED RESIDUES, REDUCED AP SITE, FURAN, BISTRANDED ABASIC LESION, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1YCW 1YCW ? ? ? 2 2 PDB 1YCW 1YCW ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YCW A 1 ? 13 ? 1YCW 1 ? 13 ? 1 13 2 2 1YCW B 1 ? 13 ? 1YCW 14 ? 26 ? 14 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 6 "O3'" ? ? ? 1_555 A 3DR 7 P ? ? A DG 6 A 3DR 7 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale2 covale both ? A 3DR 7 "O3'" ? ? ? 1_555 A DG 8 P ? ? A 3DR 7 A DG 8 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale3 covale both ? B DC 7 "O3'" ? ? ? 1_555 B 3DR 8 P ? ? B DC 20 B 3DR 21 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale4 covale both ? B 3DR 8 "O3'" ? ? ? 1_555 B DA 9 P ? ? B 3DR 21 B DA 22 1_555 ? ? ? ? ? ? ? 1.614 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 13 N1 ? ? A DC 1 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 13 O6 ? ? A DC 1 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 13 N2 ? ? A DC 1 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 12 N3 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 12 O2 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 12 N4 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 3 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 3 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 3 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 4 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 4 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 5 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 5 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 6 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 6 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 6 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 8 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 8 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 8 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 9 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 9 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 10 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 10 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 11 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 11 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 11 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 12 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 12 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 12 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 13 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 13 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 13 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 7 O2 ? ? ? 1_555 B DA 9 N6 ? ? B DC 20 B DA 22 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.434 1.335 0.099 0.009 N 2 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.427 1.341 0.086 0.010 N 3 1 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.431 1.335 0.096 0.009 N 4 1 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.430 1.335 0.095 0.008 N 5 1 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.535 1.496 0.039 0.006 N 6 1 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.430 1.341 0.089 0.010 N 7 1 C2 A DG 8 ? ? N2 A DG 8 ? ? 1.424 1.341 0.083 0.010 N 8 1 C6 A DA 10 ? ? N6 A DA 10 ? ? 1.432 1.335 0.097 0.008 N 9 1 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.431 1.335 0.096 0.009 N 10 1 C2 A DG 12 ? ? N2 A DG 12 ? ? 1.425 1.341 0.084 0.010 N 11 1 C4 A DC 13 ? ? N4 A DC 13 ? ? 1.430 1.335 0.095 0.009 N 12 1 C2 B DG 14 ? ? N2 B DG 14 ? ? 1.427 1.341 0.086 0.010 N 13 1 C4 B DC 15 ? ? N4 B DC 15 ? ? 1.430 1.335 0.095 0.009 N 14 1 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.424 1.341 0.083 0.010 N 15 1 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.535 1.496 0.039 0.006 N 16 1 C6 B DA 18 ? ? N6 B DA 18 ? ? 1.429 1.335 0.094 0.008 N 17 1 C4 B DC 19 ? ? N4 B DC 19 ? ? 1.430 1.335 0.095 0.009 N 18 1 C4 B DC 20 ? ? N4 B DC 20 ? ? 1.431 1.335 0.096 0.009 N 19 1 C6 B DA 22 ? ? N6 B DA 22 ? ? 1.431 1.335 0.096 0.008 N 20 1 C2 B DG 24 ? ? N2 B DG 24 ? ? 1.427 1.341 0.086 0.010 N 21 1 C4 B DC 25 ? ? N4 B DC 25 ? ? 1.429 1.335 0.094 0.009 N 22 1 C2 B DG 26 ? ? N2 B DG 26 ? ? 1.430 1.341 0.089 0.010 N 23 2 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.431 1.335 0.096 0.009 N 24 2 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.426 1.341 0.085 0.010 N 25 2 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.430 1.335 0.095 0.009 N 26 2 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.429 1.335 0.094 0.008 N 27 2 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.534 1.496 0.038 0.006 N 28 2 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.429 1.341 0.088 0.010 N 29 2 C2 A DG 8 ? ? N2 A DG 8 ? ? 1.424 1.341 0.083 0.010 N 30 2 C6 A DA 10 ? ? N6 A DA 10 ? ? 1.432 1.335 0.097 0.008 N 31 2 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.431 1.335 0.096 0.009 N 32 2 C2 A DG 12 ? ? N2 A DG 12 ? ? 1.425 1.341 0.084 0.010 N 33 2 C4 A DC 13 ? ? N4 A DC 13 ? ? 1.430 1.335 0.095 0.009 N 34 2 C2 B DG 14 ? ? N2 B DG 14 ? ? 1.427 1.341 0.086 0.010 N 35 2 C4 B DC 15 ? ? N4 B DC 15 ? ? 1.432 1.335 0.097 0.009 N 36 2 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.424 1.341 0.083 0.010 N 37 2 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.534 1.496 0.038 0.006 N 38 2 C6 B DA 18 ? ? N6 B DA 18 ? ? 1.428 1.335 0.093 0.008 N 39 2 C4 B DC 19 ? ? N4 B DC 19 ? ? 1.428 1.335 0.093 0.009 N 40 2 C4 B DC 20 ? ? N4 B DC 20 ? ? 1.430 1.335 0.095 0.009 N 41 2 C6 B DA 22 ? ? N6 B DA 22 ? ? 1.432 1.335 0.097 0.008 N 42 2 C2 B DG 24 ? ? N2 B DG 24 ? ? 1.426 1.341 0.085 0.010 N 43 2 C4 B DC 25 ? ? N4 B DC 25 ? ? 1.430 1.335 0.095 0.009 N 44 2 C2 B DG 26 ? ? N2 B DG 26 ? ? 1.431 1.341 0.090 0.010 N 45 3 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.432 1.335 0.097 0.009 N 46 3 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.427 1.341 0.086 0.010 N 47 3 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.430 1.335 0.095 0.009 N 48 3 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.429 1.335 0.094 0.008 N 49 3 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.534 1.496 0.038 0.006 N 50 3 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.430 1.341 0.089 0.010 N 51 3 C2 A DG 8 ? ? N2 A DG 8 ? ? 1.427 1.341 0.086 0.010 N 52 3 C6 A DA 10 ? ? N6 A DA 10 ? ? 1.432 1.335 0.097 0.008 N 53 3 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.430 1.335 0.095 0.009 N 54 3 C2 A DG 12 ? ? N2 A DG 12 ? ? 1.424 1.341 0.083 0.010 N 55 3 C4 A DC 13 ? ? N4 A DC 13 ? ? 1.430 1.335 0.095 0.009 N 56 3 C2 B DG 14 ? ? N2 B DG 14 ? ? 1.425 1.341 0.084 0.010 N 57 3 C4 B DC 15 ? ? N4 B DC 15 ? ? 1.431 1.335 0.096 0.009 N 58 3 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.425 1.341 0.084 0.010 N 59 3 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.535 1.496 0.039 0.006 N 60 3 C6 B DA 18 ? ? N6 B DA 18 ? ? 1.427 1.335 0.092 0.008 N 61 3 C4 B DC 19 ? ? N4 B DC 19 ? ? 1.428 1.335 0.093 0.009 N 62 3 C4 B DC 20 ? ? N4 B DC 20 ? ? 1.429 1.335 0.094 0.009 N 63 3 C6 B DA 22 ? ? N6 B DA 22 ? ? 1.433 1.335 0.098 0.008 N 64 3 C5 B DT 23 ? ? C7 B DT 23 ? ? 1.533 1.496 0.037 0.006 N 65 3 C2 B DG 24 ? ? N2 B DG 24 ? ? 1.427 1.341 0.086 0.010 N 66 3 C4 B DC 25 ? ? N4 B DC 25 ? ? 1.428 1.335 0.093 0.009 N 67 3 C2 B DG 26 ? ? N2 B DG 26 ? ? 1.430 1.341 0.089 0.010 N 68 4 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.432 1.335 0.097 0.009 N 69 4 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.426 1.341 0.085 0.010 N 70 4 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.430 1.335 0.095 0.009 N 71 4 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.429 1.335 0.094 0.008 N 72 4 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.535 1.496 0.039 0.006 N 73 4 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.430 1.341 0.089 0.010 N 74 4 C2 A DG 8 ? ? N2 A DG 8 ? ? 1.423 1.341 0.082 0.010 N 75 4 C6 A DA 10 ? ? N6 A DA 10 ? ? 1.431 1.335 0.096 0.008 N 76 4 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.430 1.335 0.095 0.009 N 77 4 C2 A DG 12 ? ? N2 A DG 12 ? ? 1.425 1.341 0.084 0.010 N 78 4 C4 A DC 13 ? ? N4 A DC 13 ? ? 1.431 1.335 0.096 0.009 N 79 4 C2 B DG 14 ? ? N2 B DG 14 ? ? 1.426 1.341 0.085 0.010 N 80 4 C4 B DC 15 ? ? N4 B DC 15 ? ? 1.430 1.335 0.095 0.009 N 81 4 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.425 1.341 0.084 0.010 N 82 4 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.534 1.496 0.038 0.006 N 83 4 C6 B DA 18 ? ? N6 B DA 18 ? ? 1.429 1.335 0.094 0.008 N 84 4 C4 B DC 19 ? ? N4 B DC 19 ? ? 1.430 1.335 0.095 0.009 N 85 4 C4 B DC 20 ? ? N4 B DC 20 ? ? 1.430 1.335 0.095 0.009 N 86 4 C6 B DA 22 ? ? N6 B DA 22 ? ? 1.431 1.335 0.096 0.008 N 87 4 C5 B DT 23 ? ? C7 B DT 23 ? ? 1.533 1.496 0.037 0.006 N 88 4 C2 B DG 24 ? ? N2 B DG 24 ? ? 1.427 1.341 0.086 0.010 N 89 4 C4 B DC 25 ? ? N4 B DC 25 ? ? 1.430 1.335 0.095 0.009 N 90 4 C2 B DG 26 ? ? N2 B DG 26 ? ? 1.430 1.341 0.089 0.010 N 91 5 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.431 1.335 0.096 0.009 N 92 5 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.427 1.341 0.086 0.010 N 93 5 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.431 1.335 0.096 0.009 N 94 5 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.431 1.335 0.096 0.008 N 95 5 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.533 1.496 0.037 0.006 N 96 5 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.429 1.341 0.088 0.010 N 97 5 C2 A DG 8 ? ? N2 A DG 8 ? ? 1.428 1.341 0.087 0.010 N 98 5 C6 A DA 10 ? ? N6 A DA 10 ? ? 1.431 1.335 0.096 0.008 N 99 5 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.431 1.335 0.096 0.009 N 100 5 C2 A DG 12 ? ? N2 A DG 12 ? ? 1.425 1.341 0.084 0.010 N 101 5 C4 A DC 13 ? ? N4 A DC 13 ? ? 1.429 1.335 0.094 0.009 N 102 5 C2 B DG 14 ? ? N2 B DG 14 ? ? 1.426 1.341 0.085 0.010 N 103 5 C4 B DC 15 ? ? N4 B DC 15 ? ? 1.431 1.335 0.096 0.009 N 104 5 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.424 1.341 0.083 0.010 N 105 5 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.535 1.496 0.039 0.006 N 106 5 C6 B DA 18 ? ? N6 B DA 18 ? ? 1.427 1.335 0.092 0.008 N 107 5 C4 B DC 19 ? ? N4 B DC 19 ? ? 1.428 1.335 0.093 0.009 N 108 5 C4 B DC 20 ? ? N4 B DC 20 ? ? 1.431 1.335 0.096 0.009 N 109 5 C6 B DA 22 ? ? N6 B DA 22 ? ? 1.429 1.335 0.094 0.008 N 110 5 C5 B DT 23 ? ? C7 B DT 23 ? ? 1.533 1.496 0.037 0.006 N 111 5 C2 B DG 24 ? ? N2 B DG 24 ? ? 1.426 1.341 0.085 0.010 N 112 5 C4 B DC 25 ? ? N4 B DC 25 ? ? 1.430 1.335 0.095 0.009 N 113 5 C2 B DG 26 ? ? N2 B DG 26 ? ? 1.430 1.341 0.089 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.31 108.30 3.01 0.30 N 2 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 103.27 106.40 -3.13 0.40 N 3 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.41 108.30 2.11 0.30 N 4 1 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.86 122.90 -4.04 0.60 N 5 1 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 116.36 113.10 3.26 0.50 N 6 1 "C1'" A DG 8 ? ? "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? 100.94 110.10 -9.16 1.00 N 7 1 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 130.85 119.70 11.15 1.20 Y 8 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? "C2'" A DT 9 ? ? 98.26 105.90 -7.64 0.80 N 9 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 101.87 108.00 -6.13 0.70 N 10 1 C4 A DT 9 ? ? C5 A DT 9 ? ? C6 A DT 9 ? ? 121.99 118.00 3.99 0.60 N 11 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.87 122.90 -4.03 0.60 N 12 1 "O3'" A DT 9 ? ? P A DA 10 ? ? "O5'" A DA 10 ? ? 92.20 104.00 -11.80 1.90 Y 13 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 100.25 105.90 -5.65 0.80 N 14 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 132.07 108.30 23.77 0.30 N 15 1 N7 A DA 10 ? ? C8 A DA 10 ? ? N9 A DA 10 ? ? 117.85 113.80 4.05 0.50 N 16 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.90 108.30 3.60 0.30 N 17 1 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 110.20 108.30 1.90 0.30 N 18 1 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 116.31 113.10 3.21 0.50 N 19 1 N7 B DG 16 ? ? C8 B DG 16 ? ? N9 B DG 16 ? ? 116.21 113.10 3.11 0.50 N 20 1 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 118.92 122.90 -3.98 0.60 N 21 1 "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? "O4'" B DA 18 ? ? 118.02 109.80 8.22 1.10 N 22 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 100.35 105.90 -5.55 0.80 N 23 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 103.52 108.00 -4.48 0.70 N 24 1 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 113.13 108.30 4.83 0.30 N 25 1 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 116.16 113.10 3.06 0.50 N 26 1 "O4'" B DG 26 ? ? "C1'" B DG 26 ? ? N9 B DG 26 ? ? 110.24 108.30 1.94 0.30 N 27 1 N7 B DG 26 ? ? C8 B DG 26 ? ? N9 B DG 26 ? ? 116.15 113.10 3.05 0.50 N 28 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.00 108.30 3.70 0.30 N 29 2 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.10 113.10 3.00 0.50 N 30 2 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 103.05 106.40 -3.35 0.40 N 31 2 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.22 108.30 1.92 0.30 N 32 2 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.12 122.90 -3.78 0.60 N 33 2 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 116.32 113.10 3.22 0.50 N 34 2 "C1'" A DG 8 ? ? "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? 101.03 110.10 -9.07 1.00 N 35 2 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 131.06 119.70 11.36 1.20 Y 36 2 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? "C2'" A DT 9 ? ? 98.71 105.90 -7.19 0.80 N 37 2 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 101.92 108.00 -6.08 0.70 N 38 2 C4 A DT 9 ? ? C5 A DT 9 ? ? C6 A DT 9 ? ? 121.88 118.00 3.88 0.60 N 39 2 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.07 122.90 -3.83 0.60 N 40 2 "O3'" A DT 9 ? ? P A DA 10 ? ? "O5'" A DA 10 ? ? 92.51 104.00 -11.49 1.90 Y 41 2 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 100.28 105.90 -5.62 0.80 N 42 2 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 132.46 108.30 24.16 0.30 N 43 2 N7 A DA 10 ? ? C8 A DA 10 ? ? N9 A DA 10 ? ? 117.89 113.80 4.09 0.50 N 44 2 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.19 108.30 2.89 0.30 N 45 2 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 116.34 113.10 3.24 0.50 N 46 2 N7 B DG 16 ? ? C8 B DG 16 ? ? N9 B DG 16 ? ? 116.17 113.10 3.07 0.50 N 47 2 "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? "O4'" B DA 18 ? ? 117.93 109.80 8.13 1.10 N 48 2 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 100.74 105.90 -5.16 0.80 N 49 2 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 113.50 108.30 5.20 0.30 N 50 2 N7 B DA 22 ? ? C8 B DA 22 ? ? N9 B DA 22 ? ? 116.92 113.80 3.12 0.50 N 51 2 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 116.11 113.10 3.01 0.50 N 52 2 "O4'" B DG 26 ? ? "C1'" B DG 26 ? ? N9 B DG 26 ? ? 110.26 108.30 1.96 0.30 N 53 2 N7 B DG 26 ? ? C8 B DG 26 ? ? N9 B DG 26 ? ? 116.19 113.10 3.09 0.50 N 54 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.52 108.30 4.22 0.30 N 55 3 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 103.08 106.40 -3.32 0.40 N 56 3 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.80 122.90 -4.10 0.60 N 57 3 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 116.35 113.10 3.25 0.50 N 58 3 "C1'" A DG 8 ? ? "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? 101.27 110.10 -8.83 1.00 N 59 3 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 131.61 119.70 11.91 1.20 Y 60 3 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? "C2'" A DT 9 ? ? 98.36 105.90 -7.54 0.80 N 61 3 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 102.06 108.00 -5.94 0.70 N 62 3 C4 A DT 9 ? ? C5 A DT 9 ? ? C6 A DT 9 ? ? 121.95 118.00 3.95 0.60 N 63 3 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.17 122.90 -3.73 0.60 N 64 3 "O3'" A DT 9 ? ? P A DA 10 ? ? "O5'" A DA 10 ? ? 92.57 104.00 -11.43 1.90 Y 65 3 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 100.05 105.90 -5.85 0.80 N 66 3 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 131.88 108.30 23.58 0.30 N 67 3 N7 A DA 10 ? ? C8 A DA 10 ? ? N9 A DA 10 ? ? 118.09 113.80 4.29 0.50 N 68 3 C8 A DA 10 ? ? N9 A DA 10 ? ? C4 A DA 10 ? ? 103.31 105.80 -2.49 0.40 N 69 3 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.11 108.30 3.81 0.30 N 70 3 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 116.30 113.10 3.20 0.50 N 71 3 N7 B DG 16 ? ? C8 B DG 16 ? ? N9 B DG 16 ? ? 116.21 113.10 3.11 0.50 N 72 3 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 119.23 122.90 -3.67 0.60 N 73 3 "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? "O4'" B DA 18 ? ? 117.71 109.80 7.91 1.10 N 74 3 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 100.66 105.90 -5.24 0.80 N 75 3 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 110.20 108.30 1.90 0.30 N 76 3 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 116.21 113.10 3.11 0.50 N 77 3 N7 B DG 26 ? ? C8 B DG 26 ? ? N9 B DG 26 ? ? 116.20 113.10 3.10 0.50 N 78 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.33 108.30 4.03 0.30 N 79 4 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 102.99 106.40 -3.41 0.40 N 80 4 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.17 122.90 -3.73 0.60 N 81 4 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 116.33 113.10 3.23 0.50 N 82 4 "C1'" A DG 8 ? ? "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? 101.07 110.10 -9.03 1.00 N 83 4 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 130.48 119.70 10.78 1.20 Y 84 4 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? "C2'" A DT 9 ? ? 98.28 105.90 -7.62 0.80 N 85 4 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 102.19 108.00 -5.81 0.70 N 86 4 C4 A DT 9 ? ? C5 A DT 9 ? ? C6 A DT 9 ? ? 122.03 118.00 4.03 0.60 N 87 4 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.90 122.90 -4.00 0.60 N 88 4 "O3'" A DT 9 ? ? P A DA 10 ? ? "O5'" A DA 10 ? ? 92.41 104.00 -11.59 1.90 Y 89 4 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 100.22 105.90 -5.68 0.80 N 90 4 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 132.22 108.30 23.92 0.30 N 91 4 N7 A DA 10 ? ? C8 A DA 10 ? ? N9 A DA 10 ? ? 117.98 113.80 4.18 0.50 N 92 4 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.73 108.30 2.43 0.30 N 93 4 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 116.28 113.10 3.18 0.50 N 94 4 N7 B DG 16 ? ? C8 B DG 16 ? ? N9 B DG 16 ? ? 116.15 113.10 3.05 0.50 N 95 4 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 119.04 122.90 -3.86 0.60 N 96 4 "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? "O4'" B DA 18 ? ? 118.30 109.80 8.50 1.10 N 97 4 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 100.09 105.90 -5.81 0.80 N 98 4 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 102.95 108.00 -5.05 0.70 N 99 4 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 113.79 108.30 5.49 0.30 N 100 4 "O4'" B DT 23 ? ? "C1'" B DT 23 ? ? N1 B DT 23 ? ? 110.58 108.30 2.28 0.30 N 101 4 C6 B DT 23 ? ? C5 B DT 23 ? ? C7 B DT 23 ? ? 119.26 122.90 -3.64 0.60 N 102 4 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 116.18 113.10 3.08 0.50 N 103 4 N7 B DG 26 ? ? C8 B DG 26 ? ? N9 B DG 26 ? ? 116.21 113.10 3.11 0.50 N 104 5 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.35 108.30 4.05 0.30 N 105 5 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 103.08 106.40 -3.32 0.40 N 106 5 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 116.26 113.10 3.16 0.50 N 107 5 "C1'" A DG 8 ? ? "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? 100.94 110.10 -9.16 1.00 N 108 5 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 130.53 119.70 10.83 1.20 Y 109 5 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? "C2'" A DT 9 ? ? 97.93 105.90 -7.97 0.80 N 110 5 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 102.19 108.00 -5.81 0.70 N 111 5 C4 A DT 9 ? ? C5 A DT 9 ? ? C6 A DT 9 ? ? 121.89 118.00 3.89 0.60 N 112 5 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.80 122.90 -4.10 0.60 N 113 5 "O3'" A DT 9 ? ? P A DA 10 ? ? "O5'" A DA 10 ? ? 92.13 104.00 -11.87 1.90 Y 114 5 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 100.26 105.90 -5.64 0.80 N 115 5 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 131.76 108.30 23.46 0.30 N 116 5 N7 A DA 10 ? ? C8 A DA 10 ? ? N9 A DA 10 ? ? 118.01 113.80 4.21 0.50 N 117 5 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.27 108.30 1.97 0.30 N 118 5 N7 A DG 12 ? ? C8 A DG 12 ? ? N9 A DG 12 ? ? 116.12 113.10 3.02 0.50 N 119 5 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 116.40 113.10 3.30 0.50 N 120 5 C8 B DG 14 ? ? N9 B DG 14 ? ? C4 B DG 14 ? ? 103.95 106.40 -2.45 0.40 N 121 5 N7 B DG 16 ? ? C8 B DG 16 ? ? N9 B DG 16 ? ? 116.27 113.10 3.17 0.50 N 122 5 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 119.29 122.90 -3.61 0.60 N 123 5 "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? "O4'" B DA 18 ? ? 118.14 109.80 8.34 1.10 N 124 5 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 100.43 105.90 -5.47 0.80 N 125 5 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 112.37 108.30 4.07 0.30 N 126 5 "O4'" B DT 23 ? ? "C1'" B DT 23 ? ? N1 B DT 23 ? ? 112.04 108.30 3.74 0.30 N 127 5 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 110.40 108.30 2.10 0.30 N 128 5 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 116.14 113.10 3.04 0.50 N 129 5 "O4'" B DG 26 ? ? "C1'" B DG 26 ? ? N9 B DG 26 ? ? 110.39 108.30 2.09 0.30 N # _pdbx_nmr_ensemble.entry_id 1YCW _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1YCW _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2mM DUPLEX, 25mM PHOSPHATE BUFFER, 50mM NaCl, 0.5mM EDTA' _pdbx_nmr_sample_details.solvent_system '25 mM PHOSPHATE BUFFER; PH 6.8; 50 mM NaCl; 0.5 mM EDTA.' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength 'NOT DETERMINED' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 '2D TOCSY' 1 3 1 DQF-COSY 1 4 1 'COSY, COSY45' 1 # _pdbx_nmr_details.entry_id 1YCW _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques.' # _pdbx_nmr_refine.entry_id 1YCW _pdbx_nmr_refine.method 'RESTRAINED MOLECULAR DYNAMICS' _pdbx_nmr_refine.details ;1) HEATING STAGE: FROM 150 TO 500 K IN 70PS. INTRODUCTION OF EXPERIMENTAL RESTRAINTS AT THE END OF THIS STAGE. 2) HIGH TEMPERATURE STAGE: 50 PS DYNAMICS AT 500K 3) COOLING STAGE: FROM 500 TO 300K IN 40PS. 4) EQUILIBRATION STAGE: 120PS DYNAMICS AT 300K ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 'A. BRUNGER' 1 'data analysis' Felix 98 ? 2 'data analysis' 'INSIGHT 95, MIDAS PLUS, CURVES 5' ? ? 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3DR "O5'" O N N 1 3DR P P N N 2 3DR OP1 O N N 3 3DR OP2 O N N 4 3DR OP3 O N N 5 3DR "C2'" C N N 6 3DR "C5'" C N N 7 3DR "C4'" C N R 8 3DR "O4'" O N N 9 3DR "C1'" C N N 10 3DR "C3'" C N S 11 3DR "O3'" O N N 12 3DR HOP2 H N N 13 3DR HOP3 H N N 14 3DR "H2'" H N N 15 3DR "H2''" H N N 16 3DR "H5'" H N N 17 3DR "H5''" H N N 18 3DR "H4'1" H N N 19 3DR "H1'1" H N N 20 3DR "H1'2" H N N 21 3DR "H3'" H N N 22 3DR "HO3'" H N N 23 DA OP3 O N N 24 DA P P N N 25 DA OP1 O N N 26 DA OP2 O N N 27 DA "O5'" O N N 28 DA "C5'" C N N 29 DA "C4'" C N R 30 DA "O4'" O N N 31 DA "C3'" C N S 32 DA "O3'" O N N 33 DA "C2'" C N N 34 DA "C1'" C N R 35 DA N9 N Y N 36 DA C8 C Y N 37 DA N7 N Y N 38 DA C5 C Y N 39 DA C6 C Y N 40 DA N6 N N N 41 DA N1 N Y N 42 DA C2 C Y N 43 DA N3 N Y N 44 DA C4 C Y N 45 DA HOP3 H N N 46 DA HOP2 H N N 47 DA "H5'" H N N 48 DA "H5''" H N N 49 DA "H4'" H N N 50 DA "H3'" H N N 51 DA "HO3'" H N N 52 DA "H2'" H N N 53 DA "H2''" H N N 54 DA "H1'" H N N 55 DA H8 H N N 56 DA H61 H N N 57 DA H62 H N N 58 DA H2 H N N 59 DC OP3 O N N 60 DC P P N N 61 DC OP1 O N N 62 DC OP2 O N N 63 DC "O5'" O N N 64 DC "C5'" C N N 65 DC "C4'" C N R 66 DC "O4'" O N N 67 DC "C3'" C N S 68 DC "O3'" O N N 69 DC "C2'" C N N 70 DC "C1'" C N R 71 DC N1 N N N 72 DC C2 C N N 73 DC O2 O N N 74 DC N3 N N N 75 DC C4 C N N 76 DC N4 N N N 77 DC C5 C N N 78 DC C6 C N N 79 DC HOP3 H N N 80 DC HOP2 H N N 81 DC "H5'" H N N 82 DC "H5''" H N N 83 DC "H4'" H N N 84 DC "H3'" H N N 85 DC "HO3'" H N N 86 DC "H2'" H N N 87 DC "H2''" H N N 88 DC "H1'" H N N 89 DC H41 H N N 90 DC H42 H N N 91 DC H5 H N N 92 DC H6 H N N 93 DG OP3 O N N 94 DG P P N N 95 DG OP1 O N N 96 DG OP2 O N N 97 DG "O5'" O N N 98 DG "C5'" C N N 99 DG "C4'" C N R 100 DG "O4'" O N N 101 DG "C3'" C N S 102 DG "O3'" O N N 103 DG "C2'" C N N 104 DG "C1'" C N R 105 DG N9 N Y N 106 DG C8 C Y N 107 DG N7 N Y N 108 DG C5 C Y N 109 DG C6 C N N 110 DG O6 O N N 111 DG N1 N N N 112 DG C2 C N N 113 DG N2 N N N 114 DG N3 N N N 115 DG C4 C Y N 116 DG HOP3 H N N 117 DG HOP2 H N N 118 DG "H5'" H N N 119 DG "H5''" H N N 120 DG "H4'" H N N 121 DG "H3'" H N N 122 DG "HO3'" H N N 123 DG "H2'" H N N 124 DG "H2''" H N N 125 DG "H1'" H N N 126 DG H8 H N N 127 DG H1 H N N 128 DG H21 H N N 129 DG H22 H N N 130 DT OP3 O N N 131 DT P P N N 132 DT OP1 O N N 133 DT OP2 O N N 134 DT "O5'" O N N 135 DT "C5'" C N N 136 DT "C4'" C N R 137 DT "O4'" O N N 138 DT "C3'" C N S 139 DT "O3'" O N N 140 DT "C2'" C N N 141 DT "C1'" C N R 142 DT N1 N N N 143 DT C2 C N N 144 DT O2 O N N 145 DT N3 N N N 146 DT C4 C N N 147 DT O4 O N N 148 DT C5 C N N 149 DT C7 C N N 150 DT C6 C N N 151 DT HOP3 H N N 152 DT HOP2 H N N 153 DT "H5'" H N N 154 DT "H5''" H N N 155 DT "H4'" H N N 156 DT "H3'" H N N 157 DT "HO3'" H N N 158 DT "H2'" H N N 159 DT "H2''" H N N 160 DT "H1'" H N N 161 DT H3 H N N 162 DT H71 H N N 163 DT H72 H N N 164 DT H73 H N N 165 DT H6 H N N 166 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3DR "O5'" P sing N N 1 3DR "O5'" "C5'" sing N N 2 3DR P OP1 doub N N 3 3DR P OP2 sing N N 4 3DR P OP3 sing N N 5 3DR OP2 HOP2 sing N N 6 3DR OP3 HOP3 sing N N 7 3DR "C2'" "C1'" sing N N 8 3DR "C2'" "C3'" sing N N 9 3DR "C2'" "H2'" sing N N 10 3DR "C2'" "H2''" sing N N 11 3DR "C5'" "C4'" sing N N 12 3DR "C5'" "H5'" sing N N 13 3DR "C5'" "H5''" sing N N 14 3DR "C4'" "O4'" sing N N 15 3DR "C4'" "C3'" sing N N 16 3DR "C4'" "H4'1" sing N N 17 3DR "O4'" "C1'" sing N N 18 3DR "C1'" "H1'1" sing N N 19 3DR "C1'" "H1'2" sing N N 20 3DR "C3'" "O3'" sing N N 21 3DR "C3'" "H3'" sing N N 22 3DR "O3'" "HO3'" sing N N 23 DA OP3 P sing N N 24 DA OP3 HOP3 sing N N 25 DA P OP1 doub N N 26 DA P OP2 sing N N 27 DA P "O5'" sing N N 28 DA OP2 HOP2 sing N N 29 DA "O5'" "C5'" sing N N 30 DA "C5'" "C4'" sing N N 31 DA "C5'" "H5'" sing N N 32 DA "C5'" "H5''" sing N N 33 DA "C4'" "O4'" sing N N 34 DA "C4'" "C3'" sing N N 35 DA "C4'" "H4'" sing N N 36 DA "O4'" "C1'" sing N N 37 DA "C3'" "O3'" sing N N 38 DA "C3'" "C2'" sing N N 39 DA "C3'" "H3'" sing N N 40 DA "O3'" "HO3'" sing N N 41 DA "C2'" "C1'" sing N N 42 DA "C2'" "H2'" sing N N 43 DA "C2'" "H2''" sing N N 44 DA "C1'" N9 sing N N 45 DA "C1'" "H1'" sing N N 46 DA N9 C8 sing Y N 47 DA N9 C4 sing Y N 48 DA C8 N7 doub Y N 49 DA C8 H8 sing N N 50 DA N7 C5 sing Y N 51 DA C5 C6 sing Y N 52 DA C5 C4 doub Y N 53 DA C6 N6 sing N N 54 DA C6 N1 doub Y N 55 DA N6 H61 sing N N 56 DA N6 H62 sing N N 57 DA N1 C2 sing Y N 58 DA C2 N3 doub Y N 59 DA C2 H2 sing N N 60 DA N3 C4 sing Y N 61 DC OP3 P sing N N 62 DC OP3 HOP3 sing N N 63 DC P OP1 doub N N 64 DC P OP2 sing N N 65 DC P "O5'" sing N N 66 DC OP2 HOP2 sing N N 67 DC "O5'" "C5'" sing N N 68 DC "C5'" "C4'" sing N N 69 DC "C5'" "H5'" sing N N 70 DC "C5'" "H5''" sing N N 71 DC "C4'" "O4'" sing N N 72 DC "C4'" "C3'" sing N N 73 DC "C4'" "H4'" sing N N 74 DC "O4'" "C1'" sing N N 75 DC "C3'" "O3'" sing N N 76 DC "C3'" "C2'" sing N N 77 DC "C3'" "H3'" sing N N 78 DC "O3'" "HO3'" sing N N 79 DC "C2'" "C1'" sing N N 80 DC "C2'" "H2'" sing N N 81 DC "C2'" "H2''" sing N N 82 DC "C1'" N1 sing N N 83 DC "C1'" "H1'" sing N N 84 DC N1 C2 sing N N 85 DC N1 C6 sing N N 86 DC C2 O2 doub N N 87 DC C2 N3 sing N N 88 DC N3 C4 doub N N 89 DC C4 N4 sing N N 90 DC C4 C5 sing N N 91 DC N4 H41 sing N N 92 DC N4 H42 sing N N 93 DC C5 C6 doub N N 94 DC C5 H5 sing N N 95 DC C6 H6 sing N N 96 DG OP3 P sing N N 97 DG OP3 HOP3 sing N N 98 DG P OP1 doub N N 99 DG P OP2 sing N N 100 DG P "O5'" sing N N 101 DG OP2 HOP2 sing N N 102 DG "O5'" "C5'" sing N N 103 DG "C5'" "C4'" sing N N 104 DG "C5'" "H5'" sing N N 105 DG "C5'" "H5''" sing N N 106 DG "C4'" "O4'" sing N N 107 DG "C4'" "C3'" sing N N 108 DG "C4'" "H4'" sing N N 109 DG "O4'" "C1'" sing N N 110 DG "C3'" "O3'" sing N N 111 DG "C3'" "C2'" sing N N 112 DG "C3'" "H3'" sing N N 113 DG "O3'" "HO3'" sing N N 114 DG "C2'" "C1'" sing N N 115 DG "C2'" "H2'" sing N N 116 DG "C2'" "H2''" sing N N 117 DG "C1'" N9 sing N N 118 DG "C1'" "H1'" sing N N 119 DG N9 C8 sing Y N 120 DG N9 C4 sing Y N 121 DG C8 N7 doub Y N 122 DG C8 H8 sing N N 123 DG N7 C5 sing Y N 124 DG C5 C6 sing N N 125 DG C5 C4 doub Y N 126 DG C6 O6 doub N N 127 DG C6 N1 sing N N 128 DG N1 C2 sing N N 129 DG N1 H1 sing N N 130 DG C2 N2 sing N N 131 DG C2 N3 doub N N 132 DG N2 H21 sing N N 133 DG N2 H22 sing N N 134 DG N3 C4 sing N N 135 DT OP3 P sing N N 136 DT OP3 HOP3 sing N N 137 DT P OP1 doub N N 138 DT P OP2 sing N N 139 DT P "O5'" sing N N 140 DT OP2 HOP2 sing N N 141 DT "O5'" "C5'" sing N N 142 DT "C5'" "C4'" sing N N 143 DT "C5'" "H5'" sing N N 144 DT "C5'" "H5''" sing N N 145 DT "C4'" "O4'" sing N N 146 DT "C4'" "C3'" sing N N 147 DT "C4'" "H4'" sing N N 148 DT "O4'" "C1'" sing N N 149 DT "C3'" "O3'" sing N N 150 DT "C3'" "C2'" sing N N 151 DT "C3'" "H3'" sing N N 152 DT "O3'" "HO3'" sing N N 153 DT "C2'" "C1'" sing N N 154 DT "C2'" "H2'" sing N N 155 DT "C2'" "H2''" sing N N 156 DT "C1'" N1 sing N N 157 DT "C1'" "H1'" sing N N 158 DT N1 C2 sing N N 159 DT N1 C6 sing N N 160 DT C2 O2 doub N N 161 DT C2 N3 sing N N 162 DT N3 C4 sing N N 163 DT N3 H3 sing N N 164 DT C4 O4 doub N N 165 DT C4 C5 sing N N 166 DT C5 C7 sing N N 167 DT C5 C6 doub N N 168 DT C7 H71 sing N N 169 DT C7 H72 sing N N 170 DT C7 H73 sing N N 171 DT C6 H6 sing N N 172 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1YCW 'double helix' 1YCW 'b-form double helix' 1YCW 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 13 1_555 0.550 -0.197 0.011 -0.200 0.000 -2.125 1 A_DC1:DG26_B A 1 ? B 26 ? 19 1 1 A DG 2 1_555 B DC 12 1_555 -0.755 -0.325 0.011 -2.974 -8.303 -4.402 2 A_DG2:DC25_B A 2 ? B 25 ? 19 1 1 A DC 3 1_555 B DG 11 1_555 0.712 -0.257 0.096 -4.420 -4.270 -0.968 3 A_DC3:DG24_B A 3 ? B 24 ? 19 1 1 A DA 4 1_555 B DT 10 1_555 0.213 -0.126 -0.078 -15.772 -15.290 0.986 4 A_DA4:DT23_B A 4 ? B 23 ? 20 1 1 A DT 5 1_555 B DA 9 1_555 0.097 -0.185 0.147 -12.813 -19.076 3.038 5 A_DT5:DA22_B A 5 ? B 22 ? 20 1 1 A DG 6 1_555 B DC 7 1_555 -0.459 -0.161 0.157 8.850 6.593 -4.170 6 A_DG6:DC20_B A 6 ? B 20 ? 19 1 1 A DG 8 1_555 B DC 6 1_555 -0.911 -0.351 -0.154 16.199 -6.584 5.558 7 A_DG8:DC19_B A 8 ? B 19 ? 19 1 1 A DT 9 1_555 B DA 5 1_555 -0.107 0.057 -0.359 36.096 -13.800 -7.850 8 A_DT9:DA18_B A 9 ? B 18 ? 20 1 1 A DA 10 1_555 B DT 4 1_555 0.073 -0.235 0.423 7.557 -33.513 -15.142 9 A_DA10:DT17_B A 10 ? B 17 ? 20 1 1 A DC 11 1_555 B DG 3 1_555 0.661 -0.300 0.304 -3.785 -6.973 -1.780 10 A_DC11:DG16_B A 11 ? B 16 ? 19 1 1 A DG 12 1_555 B DC 2 1_555 -0.565 -0.262 0.175 1.411 -2.276 -1.916 11 A_DG12:DC15_B A 12 ? B 15 ? 19 1 1 A DC 13 1_555 B DG 1 1_555 0.706 -0.232 0.010 -0.085 0.003 -1.625 12 A_DC13:DG14_B A 13 ? B 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 13 1_555 A DG 2 1_555 B DC 12 1_555 0.736 -1.226 2.991 4.117 5.372 28.211 -3.511 -0.656 2.792 10.826 -8.296 28.996 1 AA_DC1DG2:DC25DG26_BB A 1 ? B 26 ? A 2 ? B 25 ? 1 A DG 2 1_555 B DC 12 1_555 A DC 3 1_555 B DG 11 1_555 0.361 -1.023 3.106 -0.025 -0.311 43.490 -1.352 -0.489 3.113 -0.420 0.034 43.492 2 AA_DG2DC3:DG24DC25_BB A 2 ? B 25 ? A 3 ? B 24 ? 1 A DC 3 1_555 B DG 11 1_555 A DA 4 1_555 B DT 10 1_555 0.035 -1.399 3.048 3.823 13.946 32.637 -4.014 0.415 2.271 23.435 -6.424 35.618 3 AA_DC3DA4:DT23DG24_BB A 3 ? B 24 ? A 4 ? B 23 ? 1 A DA 4 1_555 B DT 10 1_555 A DT 5 1_555 B DA 9 1_555 -0.449 -0.821 2.991 -3.160 7.551 31.920 -2.599 0.311 2.760 13.455 5.630 32.927 4 AA_DA4DT5:DA22DT23_BB A 4 ? B 23 ? A 5 ? B 22 ? 1 A DT 5 1_555 B DA 9 1_555 A DG 6 1_555 B DC 7 1_555 2.730 2.128 2.556 6.478 -4.700 61.910 2.226 -2.400 2.650 -4.549 -6.269 62.374 5 AA_DT5DG6:DC20DA22_BB A 5 ? B 22 ? A 6 ? B 20 ? 1 A DG 6 1_555 B DC 7 1_555 A DG 8 1_555 B DC 6 1_555 1.081 -1.220 2.987 -0.037 22.025 8.974 -7.832 -2.633 0.005 68.100 0.113 23.763 6 AA_DG6DG8:DC19DC20_BB A 6 ? B 20 ? A 8 ? B 19 ? 1 A DG 8 1_555 B DC 6 1_555 A DT 9 1_555 B DA 5 1_555 -0.757 1.299 2.642 5.901 0.657 39.304 1.850 1.660 2.527 0.970 -8.713 39.732 7 AA_DG8DT9:DA18DC19_BB A 8 ? B 19 ? A 9 ? B 18 ? 1 A DT 9 1_555 B DA 5 1_555 A DA 10 1_555 B DT 4 1_555 0.934 -1.046 3.584 -5.040 6.957 32.560 -2.991 -2.471 3.125 12.146 8.799 33.645 8 AA_DT9DA10:DT17DA18_BB A 9 ? B 18 ? A 10 ? B 17 ? 1 A DA 10 1_555 B DT 4 1_555 A DC 11 1_555 B DG 3 1_555 1.009 -1.855 3.315 4.920 3.152 41.115 -2.956 -0.895 3.265 4.461 -6.964 41.510 9 AA_DA10DC11:DG16DT17_BB A 10 ? B 17 ? A 11 ? B 16 ? 1 A DC 11 1_555 B DG 3 1_555 A DG 12 1_555 B DC 2 1_555 0.256 -1.383 2.655 1.589 7.542 26.763 -4.243 -0.244 2.201 15.880 -3.345 27.832 10 AA_DC11DG12:DC15DG16_BB A 11 ? B 16 ? A 12 ? B 15 ? 1 A DG 12 1_555 B DC 2 1_555 A DC 13 1_555 B DG 1 1_555 -0.259 -0.909 3.260 -0.242 -5.786 45.185 -0.659 0.313 3.347 -7.493 0.313 45.535 11 AA_DG12DC13:DG14DC15_BB A 12 ? B 15 ? A 13 ? B 14 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 500 ? 2 INOVA Varian 600 ? # _atom_sites.entry_id 1YCW _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_