data_1YEE # _entry.id 1YEE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YEE pdb_00001yee 10.2210/pdb1yee/pdb WWPDB D_1000177381 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YEE _pdbx_database_status.recvd_initial_deposition_date 1997-04-15 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Golinelli-Pimpaneau, B.' 1 'Knossow, M.' 2 # _citation.id primary _citation.title 'Structural convergence in the active sites of a family of catalytic antibodies.' _citation.journal_abbrev Science _citation.journal_volume 275 _citation.page_first 1140 _citation.page_last 1142 _citation.year 1997 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9027317 _citation.pdbx_database_id_DOI 10.1126/science.275.5303.1140 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Charbonnier, J.B.' 1 ? primary 'Golinelli-Pimpaneau, B.' 2 ? primary 'Gigant, B.' 3 ? primary 'Tawfik, D.S.' 4 ? primary 'Chap, R.' 5 ? primary 'Schindler, D.G.' 6 ? primary 'Kim, S.H.' 7 ? primary 'Green, B.S.' 8 ? primary 'Eshhar, Z.' 9 ? primary 'Knossow, M.' 10 ? # _cell.entry_id 1YEE _cell.length_a 67.930 _cell.length_b 76.980 _cell.length_c 45.800 _cell.angle_alpha 90.00 _cell.angle_beta 94.68 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YEE _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'IGG2A FAB FRAGMENT (D2.5)' 24065.887 1 ? ? ? 'TRANSITION STATE ANALOGUE' 2 polymer nat 'IGG2A FAB FRAGMENT (D2.5)' 23964.035 1 ? ? ? 'TRANSITION STATE ANALOGUE' 3 non-polymer syn 4-NITRO-BENZYLPHOSPHONOBUTANOYL-GLYCINE 360.256 1 ? ? ? ? 4 water nat water 18.015 93 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DIVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLSWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKI SRVEAADLGLYYCVQGTHFPYTFGGGTKLEILRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC ; ;DIVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLSWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKI SRVEAADLGLYYCVQGTHFPYTFGGGTKLEILRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC ; L ? 2 'polypeptide(L)' no no ;EVKLQESGAELVRPGASVKLSCKTSGYIFTSYWIHWVKQRAAAGLEWIARIYPGTGSSYYNVKFKGKATLTADKSSSTAY MQLSSLKSDDSAVYFCVRWGFIPVREDYVLDYWGQGTLVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEP ; ;EVKLQESGAELVRPGASVKLSCKTSGYIFTSYWIHWVKQRAAAGLEWIARIYPGTGSSYYNVKFKGKATLTADKSSSTAY MQLSSLKSDDSAVYFCVRWGFIPVREDYVLDYWGQGTLVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEP ; H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ILE n 1 3 VAL n 1 4 MET n 1 5 THR n 1 6 GLN n 1 7 SER n 1 8 PRO n 1 9 LEU n 1 10 THR n 1 11 LEU n 1 12 SER n 1 13 VAL n 1 14 THR n 1 15 ILE n 1 16 GLY n 1 17 GLN n 1 18 PRO n 1 19 ALA n 1 20 SER n 1 21 ILE n 1 22 SER n 1 23 CYS n 1 24 LYS n 1 25 SER n 1 26 SER n 1 27 GLN n 1 28 SER n 1 29 LEU n 1 30 LEU n 1 31 TYR n 1 32 SER n 1 33 ASN n 1 34 GLY n 1 35 LYS n 1 36 THR n 1 37 TYR n 1 38 LEU n 1 39 SER n 1 40 TRP n 1 41 LEU n 1 42 LEU n 1 43 GLN n 1 44 ARG n 1 45 PRO n 1 46 GLY n 1 47 GLN n 1 48 SER n 1 49 PRO n 1 50 LYS n 1 51 ARG n 1 52 LEU n 1 53 ILE n 1 54 TYR n 1 55 LEU n 1 56 VAL n 1 57 SER n 1 58 LYS n 1 59 LEU n 1 60 ASP n 1 61 SER n 1 62 GLY n 1 63 VAL n 1 64 PRO n 1 65 ASP n 1 66 ARG n 1 67 PHE n 1 68 THR n 1 69 GLY n 1 70 SER n 1 71 GLY n 1 72 SER n 1 73 GLY n 1 74 THR n 1 75 ASP n 1 76 PHE n 1 77 THR n 1 78 LEU n 1 79 LYS n 1 80 ILE n 1 81 SER n 1 82 ARG n 1 83 VAL n 1 84 GLU n 1 85 ALA n 1 86 ALA n 1 87 ASP n 1 88 LEU n 1 89 GLY n 1 90 LEU n 1 91 TYR n 1 92 TYR n 1 93 CYS n 1 94 VAL n 1 95 GLN n 1 96 GLY n 1 97 THR n 1 98 HIS n 1 99 PHE n 1 100 PRO n 1 101 TYR n 1 102 THR n 1 103 PHE n 1 104 GLY n 1 105 GLY n 1 106 GLY n 1 107 THR n 1 108 LYS n 1 109 LEU n 1 110 GLU n 1 111 ILE n 1 112 LEU n 1 113 ARG n 1 114 ALA n 1 115 ASP n 1 116 ALA n 1 117 ALA n 1 118 PRO n 1 119 THR n 1 120 VAL n 1 121 SER n 1 122 ILE n 1 123 PHE n 1 124 PRO n 1 125 PRO n 1 126 SER n 1 127 SER n 1 128 GLU n 1 129 GLN n 1 130 LEU n 1 131 THR n 1 132 SER n 1 133 GLY n 1 134 GLY n 1 135 ALA n 1 136 SER n 1 137 VAL n 1 138 VAL n 1 139 CYS n 1 140 PHE n 1 141 LEU n 1 142 ASN n 1 143 ASN n 1 144 PHE n 1 145 TYR n 1 146 PRO n 1 147 LYS n 1 148 ASP n 1 149 ILE n 1 150 ASN n 1 151 VAL n 1 152 LYS n 1 153 TRP n 1 154 LYS n 1 155 ILE n 1 156 ASP n 1 157 GLY n 1 158 SER n 1 159 GLU n 1 160 ARG n 1 161 GLN n 1 162 ASN n 1 163 GLY n 1 164 VAL n 1 165 LEU n 1 166 ASN n 1 167 SER n 1 168 TRP n 1 169 THR n 1 170 ASP n 1 171 GLN n 1 172 ASP n 1 173 SER n 1 174 LYS n 1 175 ASP n 1 176 SER n 1 177 THR n 1 178 TYR n 1 179 SER n 1 180 MET n 1 181 SER n 1 182 SER n 1 183 THR n 1 184 LEU n 1 185 THR n 1 186 LEU n 1 187 THR n 1 188 LYS n 1 189 ASP n 1 190 GLU n 1 191 TYR n 1 192 GLU n 1 193 ARG n 1 194 HIS n 1 195 ASN n 1 196 SER n 1 197 TYR n 1 198 THR n 1 199 CYS n 1 200 GLU n 1 201 ALA n 1 202 THR n 1 203 HIS n 1 204 LYS n 1 205 THR n 1 206 SER n 1 207 THR n 1 208 SER n 1 209 PRO n 1 210 ILE n 1 211 VAL n 1 212 LYS n 1 213 SER n 1 214 PHE n 1 215 ASN n 1 216 ARG n 1 217 ASN n 1 218 GLU n 1 219 CYS n 2 1 GLU n 2 2 VAL n 2 3 LYS n 2 4 LEU n 2 5 GLN n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 ALA n 2 10 GLU n 2 11 LEU n 2 12 VAL n 2 13 ARG n 2 14 PRO n 2 15 GLY n 2 16 ALA n 2 17 SER n 2 18 VAL n 2 19 LYS n 2 20 LEU n 2 21 SER n 2 22 CYS n 2 23 LYS n 2 24 THR n 2 25 SER n 2 26 GLY n 2 27 TYR n 2 28 ILE n 2 29 PHE n 2 30 THR n 2 31 SER n 2 32 TYR n 2 33 TRP n 2 34 ILE n 2 35 HIS n 2 36 TRP n 2 37 VAL n 2 38 LYS n 2 39 GLN n 2 40 ARG n 2 41 ALA n 2 42 ALA n 2 43 ALA n 2 44 GLY n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 ILE n 2 49 ALA n 2 50 ARG n 2 51 ILE n 2 52 TYR n 2 53 PRO n 2 54 GLY n 2 55 THR n 2 56 GLY n 2 57 SER n 2 58 SER n 2 59 TYR n 2 60 TYR n 2 61 ASN n 2 62 VAL n 2 63 LYS n 2 64 PHE n 2 65 LYS n 2 66 GLY n 2 67 LYS n 2 68 ALA n 2 69 THR n 2 70 LEU n 2 71 THR n 2 72 ALA n 2 73 ASP n 2 74 LYS n 2 75 SER n 2 76 SER n 2 77 SER n 2 78 THR n 2 79 ALA n 2 80 TYR n 2 81 MET n 2 82 GLN n 2 83 LEU n 2 84 SER n 2 85 SER n 2 86 LEU n 2 87 LYS n 2 88 SER n 2 89 ASP n 2 90 ASP n 2 91 SER n 2 92 ALA n 2 93 VAL n 2 94 TYR n 2 95 PHE n 2 96 CYS n 2 97 VAL n 2 98 ARG n 2 99 TRP n 2 100 GLY n 2 101 PHE n 2 102 ILE n 2 103 PRO n 2 104 VAL n 2 105 ARG n 2 106 GLU n 2 107 ASP n 2 108 TYR n 2 109 VAL n 2 110 LEU n 2 111 ASP n 2 112 TYR n 2 113 TRP n 2 114 GLY n 2 115 GLN n 2 116 GLY n 2 117 THR n 2 118 LEU n 2 119 VAL n 2 120 THR n 2 121 VAL n 2 122 SER n 2 123 SER n 2 124 ALA n 2 125 LYS n 2 126 THR n 2 127 THR n 2 128 ALA n 2 129 PRO n 2 130 SER n 2 131 VAL n 2 132 TYR n 2 133 PRO n 2 134 LEU n 2 135 ALA n 2 136 PRO n 2 137 VAL n 2 138 CYS n 2 139 GLY n 2 140 ASP n 2 141 THR n 2 142 THR n 2 143 GLY n 2 144 SER n 2 145 SER n 2 146 VAL n 2 147 THR n 2 148 LEU n 2 149 GLY n 2 150 CYS n 2 151 LEU n 2 152 VAL n 2 153 LYS n 2 154 GLY n 2 155 TYR n 2 156 PHE n 2 157 PRO n 2 158 GLU n 2 159 PRO n 2 160 VAL n 2 161 THR n 2 162 LEU n 2 163 THR n 2 164 TRP n 2 165 ASN n 2 166 SER n 2 167 GLY n 2 168 SER n 2 169 LEU n 2 170 SER n 2 171 SER n 2 172 GLY n 2 173 VAL n 2 174 HIS n 2 175 THR n 2 176 PHE n 2 177 PRO n 2 178 ALA n 2 179 VAL n 2 180 LEU n 2 181 GLN n 2 182 SER n 2 183 ASP n 2 184 LEU n 2 185 TYR n 2 186 THR n 2 187 LEU n 2 188 SER n 2 189 SER n 2 190 SER n 2 191 VAL n 2 192 THR n 2 193 VAL n 2 194 THR n 2 195 SER n 2 196 SER n 2 197 THR n 2 198 TRP n 2 199 PRO n 2 200 SER n 2 201 GLN n 2 202 SER n 2 203 ILE n 2 204 THR n 2 205 CYS n 2 206 ASN n 2 207 VAL n 2 208 ALA n 2 209 HIS n 2 210 PRO n 2 211 ALA n 2 212 SER n 2 213 SER n 2 214 THR n 2 215 LYS n 2 216 VAL n 2 217 ASP n 2 218 LYS n 2 219 LYS n 2 220 ILE n 2 221 GLU n 2 222 PRO n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? 'house mouse' 'Mus musculus' 10090 Mus ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? 'house mouse' 'Mus musculus' 10090 Mus ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PIR S16112 1 S16112 1 ;DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLYWYLQKPGQSPKPLIYRVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYFCFQGTHVPYTFGGGTRLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC ; ? 2 UNP GCAM_MOUSE 2 P01865 1 ;AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSI TCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISW FVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEE MTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLHNHHT TKSFSRTPGLDLDDVCAEAQDGELDGLWTTITIFISLFLLSVCYSASVTLFKVKWIFSSVVELKQTISPDYRNMIGQGA ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YEE L 1 ? 219 ? S16112 1 ? 219 ? 1 214 2 2 1YEE H 124 ? 222 ? P01865 1 ? 99 ? 114 223 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YEE ILE L 2 ? PIR S16112 VAL 2 conflict 2 1 1 1YEE SER L 7 ? PIR S16112 THR 7 conflict 7 2 1 1YEE THR L 10 ? PIR S16112 SER 10 conflict 10 3 1 1YEE SER L 12 ? PIR S16112 PRO 12 conflict 12 4 1 1YEE THR L 14 ? PIR S16112 SER 14 conflict 14 5 1 1YEE ILE L 15 ? PIR S16112 LEU 15 conflict 15 6 1 1YEE GLN L 17 ? PIR S16112 ASP 17 conflict 17 7 1 1YEE PRO L 18 ? PIR S16112 GLN 18 conflict 18 8 1 1YEE LYS L 24 ? PIR S16112 ARG 24 conflict 24 9 1 1YEE LEU L 29 B PIR S16112 VAL 30 conflict 27 10 1 1YEE TYR L 31 D PIR S16112 HIS 31 conflict 27 11 1 1YEE LYS L 35 ? PIR S16112 ASN 35 conflict 30 12 1 1YEE SER L 39 ? PIR S16112 TYR 39 conflict 34 13 1 1YEE LEU L 41 ? PIR S16112 TYR 41 conflict 36 14 1 1YEE ARG L 44 ? PIR S16112 LYS 44 conflict 39 15 1 1YEE ARG L 51 ? PIR S16112 PRO 51 conflict 46 16 1 1YEE LEU L 55 ? PIR S16112 ARG 55 conflict 50 17 1 1YEE LYS L 58 ? PIR S16112 ASN 58 conflict 53 18 1 1YEE LEU L 59 ? PIR S16112 ARG 59 conflict 54 19 1 1YEE ASP L 60 ? PIR S16112 PHE 60 conflict 55 20 1 1YEE THR L 68 ? PIR S16112 SER 68 conflict 63 21 1 1YEE ALA L 86 ? PIR S16112 GLU 86 conflict 81 22 1 1YEE LEU L 90 ? PIR S16112 VAL 90 conflict 85 23 1 1YEE TYR L 92 ? PIR S16112 PHE 92 conflict 87 24 1 1YEE VAL L 94 ? PIR S16112 PHE 94 conflict 89 25 1 1YEE PHE L 99 ? PIR S16112 VAL 99 conflict 94 26 1 1YEE LYS L 108 ? PIR S16112 ARG 108 conflict 103 27 1 1YEE LEU L 112 ? PIR S16112 LYS 112 conflict 107 28 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PNB non-polymer . 4-NITRO-BENZYLPHOSPHONOBUTANOYL-GLYCINE ? 'C13 H17 N2 O8 P' 360.256 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1YEE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.48 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 5.6' # _diffrn.id 1 _diffrn.ambient_temp 280 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1995-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRAPHITE(002)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.375 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LURE BEAMLINE D41A' _diffrn_source.pdbx_synchrotron_site LURE _diffrn_source.pdbx_synchrotron_beamline D41A _diffrn_source.pdbx_wavelength 1.375 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1YEE _reflns.observed_criterion_sigma_I 1. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20. _reflns.d_resolution_high 2.2 _reflns.number_obs 21342 _reflns.number_all ? _reflns.percent_possible_obs 95. _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1YEE _refine.ls_number_reflns_obs 77209 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.0 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs 95. _refine.ls_R_factor_obs 0.204 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.204 _refine.ls_R_factor_R_free 0.26 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 20. _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;RESIDUES POORLY DEFINED BY THE ELECTRON DENSITY: CHAIN L: 213 - 214 CHAIN H: 129 - 132 ; _refine.pdbx_starting_model 'PDB ENTRY 1YEC' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YEE _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3380 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 3497 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 7.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.89 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 28.79 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.56 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1YEE _struct.title 'STRUCTURE OF A CATALYTIC ANTIBODY, IGG2A FAB FRAGMENT (D2.5)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YEE _struct_keywords.pdbx_keywords 'CATALYTIC ANTIBODY' _struct_keywords.text 'CATALYTIC ANTIBODY, TRANSITION STATE ANALOGUE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 85 ? ASP A 87 ? ALA L 80 ASP L 82 5 ? 3 HELX_P HELX_P2 2 SER A 127 ? SER A 132 ? SER L 122 SER L 127 1 ? 6 HELX_P HELX_P3 3 LYS A 188 ? ARG A 193 ? LYS L 183 ARG L 188 1 ? 6 HELX_P HELX_P4 4 PHE B 29 ? SER B 31 ? PHE H 29 SER H 31 5 ? 3 HELX_P HELX_P5 5 VAL B 62 ? PHE B 64 ? VAL H 61 PHE H 63 5 ? 3 HELX_P HELX_P6 6 SER B 88 ? ASP B 90 ? SER H 84 ASP H 86 5 ? 3 HELX_P HELX_P7 7 ASN B 165 ? GLY B 167 ? ASN H 160 GLY H 162 5 ? 3 HELX_P HELX_P8 8 PRO B 210 ? SER B 212 ? PRO H 211 SER H 213 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 93 SG ? ? L CYS 23 L CYS 88 1_555 ? ? ? ? ? ? ? 2.000 ? ? disulf2 disulf ? ? A CYS 139 SG ? ? ? 1_555 A CYS 199 SG ? ? L CYS 134 L CYS 194 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf3 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? H CYS 22 H CYS 92 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf4 disulf ? ? B CYS 150 SG ? ? ? 1_555 B CYS 205 SG ? ? H CYS 140 H CYS 206 1_555 ? ? ? ? ? ? ? 2.023 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 7 A . ? SER 7 L PRO 8 A ? PRO 8 L 1 -0.37 2 PHE 99 A . ? PHE 94 L PRO 100 A ? PRO 95 L 1 -0.29 3 TYR 145 A . ? TYR 140 L PRO 146 A ? PRO 141 L 1 0.33 4 PHE 156 B . ? PHE 146 H PRO 157 B ? PRO 147 H 1 -1.22 5 GLU 158 B . ? GLU 148 H PRO 159 B ? PRO 149 H 1 0.12 6 TRP 198 B . ? TRP 197 H PRO 199 B ? PRO 198 H 1 0.63 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 4 ? D ? 4 ? E ? 4 ? F ? 6 ? G ? 4 ? H ? 3 ? I ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel F 4 5 ? anti-parallel F 5 6 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel H 1 2 ? anti-parallel H 2 3 ? anti-parallel I 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 4 ? SER A 7 ? MET L 4 SER L 7 A 2 ALA A 19 ? SER A 25 ? ALA L 19 SER L 25 A 3 ASP A 75 ? ILE A 80 ? ASP L 70 ILE L 75 A 4 PHE A 67 ? SER A 72 ? PHE L 62 SER L 67 B 1 THR A 10 ? THR A 14 ? THR L 10 THR L 14 B 2 THR A 107 ? LEU A 112 ? THR L 102 LEU L 107 B 3 GLY A 89 ? GLN A 95 ? GLY L 84 GLN L 90 B 4 LEU A 38 ? GLN A 43 ? LEU L 33 GLN L 38 B 5 LYS A 50 ? ILE A 53 ? LYS L 45 ILE L 48 C 1 THR A 119 ? PHE A 123 ? THR L 114 PHE L 118 C 2 GLY A 134 ? ASN A 142 ? GLY L 129 ASN L 137 C 3 MET A 180 ? THR A 187 ? MET L 175 THR L 182 C 4 VAL A 164 ? TRP A 168 ? VAL L 159 TRP L 163 D 1 SER A 158 ? ARG A 160 ? SER L 153 ARG L 155 D 2 ILE A 149 ? ILE A 155 ? ILE L 144 ILE L 150 D 3 SER A 196 ? HIS A 203 ? SER L 191 HIS L 198 D 4 ILE A 210 ? ASN A 215 ? ILE L 205 ASN L 210 E 1 LYS B 3 ? GLU B 6 ? LYS H 3 GLU H 6 E 2 VAL B 18 ? SER B 25 ? VAL H 18 SER H 25 E 3 THR B 78 ? LEU B 83 ? THR H 77 LEU H 82 E 4 ALA B 68 ? ASP B 73 ? ALA H 67 ASP H 72 F 1 GLU B 10 ? VAL B 12 ? GLU H 10 VAL H 12 F 2 THR B 117 ? VAL B 121 ? THR H 107 VAL H 111 F 3 ALA B 92 ? VAL B 97 ? ALA H 88 VAL H 93 F 4 TRP B 33 ? ARG B 40 ? TRP H 33 ARG H 40 F 5 GLY B 44 ? TYR B 52 ? GLY H 44 TYR H 52 F 6 SER B 57 ? TYR B 60 ? SER H 56 TYR H 59 G 1 SER B 130 ? LEU B 134 ? SER H 120 LEU H 124 G 2 SER B 145 ? TYR B 155 ? SER H 135 TYR H 145 G 3 TYR B 185 ? THR B 194 ? TYR H 183 THR H 192 G 4 VAL B 173 ? THR B 175 ? VAL H 169 THR H 171 H 1 THR B 161 ? TRP B 164 ? THR H 151 TRP H 155 H 2 THR B 204 ? HIS B 209 ? THR H 204 HIS H 210 H 3 THR B 214 ? LYS B 219 ? THR H 215 LYS H 220 I 1 VAL B 179 ? GLN B 181 ? VAL H 175 GLN H 177 I 2 LEU B 184 ? THR B 186 ? LEU H 182 THR H 184 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 5 ? O THR L 5 N LYS A 24 ? N LYS L 24 A 2 3 O ALA A 19 ? O ALA L 19 N ILE A 80 ? N ILE L 75 A 3 4 O ASP A 75 ? O ASP L 70 N SER A 72 ? N SER L 67 B 1 2 O LEU A 11 ? O LEU L 11 N LYS A 108 ? N LYS L 103 B 2 3 O THR A 107 ? O THR L 102 N TYR A 91 ? N TYR L 86 B 3 4 O LEU A 90 ? O LEU L 85 N GLN A 43 ? N GLN L 38 B 4 5 O TRP A 40 ? O TRP L 35 N ILE A 53 ? N ILE L 48 C 1 2 O THR A 119 ? O THR L 114 N ASN A 142 ? N ASN L 137 C 2 3 O ALA A 135 ? O ALA L 130 N LEU A 186 ? N LEU L 181 C 3 4 O SER A 181 ? O SER L 176 N SER A 167 ? N SER L 162 D 1 2 O SER A 158 ? O SER L 153 N ILE A 155 ? N ILE L 150 D 2 3 O ASN A 150 ? O ASN L 145 N THR A 202 ? N THR L 197 D 3 4 O TYR A 197 ? O TYR L 192 N PHE A 214 ? N PHE L 209 E 1 2 O LYS B 3 ? O LYS H 3 N SER B 25 ? N SER H 25 E 2 3 O VAL B 18 ? O VAL H 18 N LEU B 83 ? N LEU H 82 E 3 4 O THR B 78 ? O THR H 77 N ASP B 73 ? N ASP H 72 F 1 2 O GLU B 10 ? O GLU H 10 N THR B 120 ? N THR H 110 F 2 3 O THR B 117 ? O THR H 107 N TYR B 94 ? N TYR H 90 F 3 4 O VAL B 93 ? O VAL H 89 N GLN B 39 ? N GLN H 39 F 4 5 O ILE B 34 ? O ILE H 34 N ILE B 51 ? N ILE H 51 F 5 6 O ARG B 50 ? O ARG H 50 N TYR B 59 ? N TYR H 58 G 1 2 O SER B 130 ? O SER H 120 N LYS B 153 ? N LYS H 143 G 2 3 O VAL B 146 ? O VAL H 136 N VAL B 193 ? N VAL H 191 G 3 4 O SER B 190 ? O SER H 188 N HIS B 174 ? N HIS H 170 H 1 2 O THR B 161 ? O THR H 151 N ALA B 208 ? N ALA H 209 H 2 3 O CYS B 205 ? O CYS H 206 N LYS B 218 ? N LYS H 219 I 1 2 O VAL B 179 ? O VAL H 175 N THR B 186 ? N THR H 184 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id H _struct_site.pdbx_auth_comp_id PNB _struct_site.pdbx_auth_seq_id 551 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE PNB H 551' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 HIS B 35 ? HIS H 35 . ? 1_555 ? 2 AC1 10 TRP B 99 ? TRP H 95 . ? 1_555 ? 3 AC1 10 PHE B 101 ? PHE H 97 . ? 1_555 ? 4 AC1 10 TYR B 108 D TYR H 100 . ? 1_555 ? 5 AC1 10 HOH E . ? HOH H 580 . ? 1_555 ? 6 AC1 10 TYR A 31 D TYR L 27 . ? 1_555 ? 7 AC1 10 VAL A 94 ? VAL L 89 . ? 1_555 ? 8 AC1 10 GLY A 96 ? GLY L 91 . ? 1_555 ? 9 AC1 10 TYR A 101 ? TYR L 96 . ? 1_555 ? 10 AC1 10 PHE A 103 ? PHE L 98 . ? 1_555 ? # _database_PDB_matrix.entry_id 1YEE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1YEE _atom_sites.fract_transf_matrix[1][1] 0.014721 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001205 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012990 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021907 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP L . n A 1 2 ILE 2 2 2 ILE ILE L . n A 1 3 VAL 3 3 3 VAL VAL L . n A 1 4 MET 4 4 4 MET MET L . n A 1 5 THR 5 5 5 THR THR L . n A 1 6 GLN 6 6 6 GLN GLN L . n A 1 7 SER 7 7 7 SER SER L . n A 1 8 PRO 8 8 8 PRO PRO L . n A 1 9 LEU 9 9 9 LEU LEU L . n A 1 10 THR 10 10 10 THR THR L . n A 1 11 LEU 11 11 11 LEU LEU L . n A 1 12 SER 12 12 12 SER SER L . n A 1 13 VAL 13 13 13 VAL VAL L . n A 1 14 THR 14 14 14 THR THR L . n A 1 15 ILE 15 15 15 ILE ILE L . n A 1 16 GLY 16 16 16 GLY GLY L . n A 1 17 GLN 17 17 17 GLN GLN L . n A 1 18 PRO 18 18 18 PRO PRO L . n A 1 19 ALA 19 19 19 ALA ALA L . n A 1 20 SER 20 20 20 SER SER L . n A 1 21 ILE 21 21 21 ILE ILE L . n A 1 22 SER 22 22 22 SER SER L . n A 1 23 CYS 23 23 23 CYS CYS L . n A 1 24 LYS 24 24 24 LYS LYS L . n A 1 25 SER 25 25 25 SER SER L . n A 1 26 SER 26 26 26 SER SER L . n A 1 27 GLN 27 27 27 GLN GLN L . n A 1 28 SER 28 27 27 SER SER L A n A 1 29 LEU 29 27 27 LEU LEU L B n A 1 30 LEU 30 27 27 LEU LEU L C n A 1 31 TYR 31 27 27 TYR TYR L D n A 1 32 SER 32 27 27 SER SER L E n A 1 33 ASN 33 28 28 ASN ASN L . n A 1 34 GLY 34 29 29 GLY GLY L . n A 1 35 LYS 35 30 30 LYS LYS L . n A 1 36 THR 36 31 31 THR THR L . n A 1 37 TYR 37 32 32 TYR TYR L . n A 1 38 LEU 38 33 33 LEU LEU L . n A 1 39 SER 39 34 34 SER SER L . n A 1 40 TRP 40 35 35 TRP TRP L . n A 1 41 LEU 41 36 36 LEU LEU L . n A 1 42 LEU 42 37 37 LEU LEU L . n A 1 43 GLN 43 38 38 GLN GLN L . n A 1 44 ARG 44 39 39 ARG ARG L . n A 1 45 PRO 45 40 40 PRO PRO L . n A 1 46 GLY 46 41 41 GLY GLY L . n A 1 47 GLN 47 42 42 GLN GLN L . n A 1 48 SER 48 43 43 SER SER L . n A 1 49 PRO 49 44 44 PRO PRO L . n A 1 50 LYS 50 45 45 LYS LYS L . n A 1 51 ARG 51 46 46 ARG ARG L . n A 1 52 LEU 52 47 47 LEU LEU L . n A 1 53 ILE 53 48 48 ILE ILE L . n A 1 54 TYR 54 49 49 TYR TYR L . n A 1 55 LEU 55 50 50 LEU LEU L . n A 1 56 VAL 56 51 51 VAL VAL L . n A 1 57 SER 57 52 52 SER SER L . n A 1 58 LYS 58 53 53 LYS LYS L . n A 1 59 LEU 59 54 54 LEU LEU L . n A 1 60 ASP 60 55 55 ASP ASP L . n A 1 61 SER 61 56 56 SER SER L . n A 1 62 GLY 62 57 57 GLY GLY L . n A 1 63 VAL 63 58 58 VAL VAL L . n A 1 64 PRO 64 59 59 PRO PRO L . n A 1 65 ASP 65 60 60 ASP ASP L . n A 1 66 ARG 66 61 61 ARG ARG L . n A 1 67 PHE 67 62 62 PHE PHE L . n A 1 68 THR 68 63 63 THR THR L . n A 1 69 GLY 69 64 64 GLY GLY L . n A 1 70 SER 70 65 65 SER SER L . n A 1 71 GLY 71 66 66 GLY GLY L . n A 1 72 SER 72 67 67 SER SER L . n A 1 73 GLY 73 68 68 GLY GLY L . n A 1 74 THR 74 69 69 THR THR L . n A 1 75 ASP 75 70 70 ASP ASP L . n A 1 76 PHE 76 71 71 PHE PHE L . n A 1 77 THR 77 72 72 THR THR L . n A 1 78 LEU 78 73 73 LEU LEU L . n A 1 79 LYS 79 74 74 LYS LYS L . n A 1 80 ILE 80 75 75 ILE ILE L . n A 1 81 SER 81 76 76 SER SER L . n A 1 82 ARG 82 77 77 ARG ARG L . n A 1 83 VAL 83 78 78 VAL VAL L . n A 1 84 GLU 84 79 79 GLU GLU L . n A 1 85 ALA 85 80 80 ALA ALA L . n A 1 86 ALA 86 81 81 ALA ALA L . n A 1 87 ASP 87 82 82 ASP ASP L . n A 1 88 LEU 88 83 83 LEU LEU L . n A 1 89 GLY 89 84 84 GLY GLY L . n A 1 90 LEU 90 85 85 LEU LEU L . n A 1 91 TYR 91 86 86 TYR TYR L . n A 1 92 TYR 92 87 87 TYR TYR L . n A 1 93 CYS 93 88 88 CYS CYS L . n A 1 94 VAL 94 89 89 VAL VAL L . n A 1 95 GLN 95 90 90 GLN GLN L . n A 1 96 GLY 96 91 91 GLY GLY L . n A 1 97 THR 97 92 92 THR THR L . n A 1 98 HIS 98 93 93 HIS HIS L . n A 1 99 PHE 99 94 94 PHE PHE L . n A 1 100 PRO 100 95 95 PRO PRO L . n A 1 101 TYR 101 96 96 TYR TYR L . n A 1 102 THR 102 97 97 THR THR L . n A 1 103 PHE 103 98 98 PHE PHE L . n A 1 104 GLY 104 99 99 GLY GLY L . n A 1 105 GLY 105 100 100 GLY GLY L . n A 1 106 GLY 106 101 101 GLY GLY L . n A 1 107 THR 107 102 102 THR THR L . n A 1 108 LYS 108 103 103 LYS LYS L . n A 1 109 LEU 109 104 104 LEU LEU L . n A 1 110 GLU 110 105 105 GLU GLU L . n A 1 111 ILE 111 106 106 ILE ILE L . n A 1 112 LEU 112 107 107 LEU LEU L . n A 1 113 ARG 113 108 108 ARG ARG L . n A 1 114 ALA 114 109 109 ALA ALA L . n A 1 115 ASP 115 110 110 ASP ASP L . n A 1 116 ALA 116 111 111 ALA ALA L . n A 1 117 ALA 117 112 112 ALA ALA L . n A 1 118 PRO 118 113 113 PRO PRO L . n A 1 119 THR 119 114 114 THR THR L . n A 1 120 VAL 120 115 115 VAL VAL L . n A 1 121 SER 121 116 116 SER SER L . n A 1 122 ILE 122 117 117 ILE ILE L . n A 1 123 PHE 123 118 118 PHE PHE L . n A 1 124 PRO 124 119 119 PRO PRO L . n A 1 125 PRO 125 120 120 PRO PRO L . n A 1 126 SER 126 121 121 SER SER L . n A 1 127 SER 127 122 122 SER SER L . n A 1 128 GLU 128 123 123 GLU GLU L . n A 1 129 GLN 129 124 124 GLN GLN L . n A 1 130 LEU 130 125 125 LEU LEU L . n A 1 131 THR 131 126 126 THR THR L . n A 1 132 SER 132 127 127 SER SER L . n A 1 133 GLY 133 128 128 GLY GLY L . n A 1 134 GLY 134 129 129 GLY GLY L . n A 1 135 ALA 135 130 130 ALA ALA L . n A 1 136 SER 136 131 131 SER SER L . n A 1 137 VAL 137 132 132 VAL VAL L . n A 1 138 VAL 138 133 133 VAL VAL L . n A 1 139 CYS 139 134 134 CYS CYS L . n A 1 140 PHE 140 135 135 PHE PHE L . n A 1 141 LEU 141 136 136 LEU LEU L . n A 1 142 ASN 142 137 137 ASN ASN L . n A 1 143 ASN 143 138 138 ASN ASN L . n A 1 144 PHE 144 139 139 PHE PHE L . n A 1 145 TYR 145 140 140 TYR TYR L . n A 1 146 PRO 146 141 141 PRO PRO L . n A 1 147 LYS 147 142 142 LYS LYS L . n A 1 148 ASP 148 143 143 ASP ASP L . n A 1 149 ILE 149 144 144 ILE ILE L . n A 1 150 ASN 150 145 145 ASN ASN L . n A 1 151 VAL 151 146 146 VAL VAL L . n A 1 152 LYS 152 147 147 LYS LYS L . n A 1 153 TRP 153 148 148 TRP TRP L . n A 1 154 LYS 154 149 149 LYS LYS L . n A 1 155 ILE 155 150 150 ILE ILE L . n A 1 156 ASP 156 151 151 ASP ASP L . n A 1 157 GLY 157 152 152 GLY GLY L . n A 1 158 SER 158 153 153 SER SER L . n A 1 159 GLU 159 154 154 GLU GLU L . n A 1 160 ARG 160 155 155 ARG ARG L . n A 1 161 GLN 161 156 156 GLN GLN L . n A 1 162 ASN 162 157 157 ASN ASN L . n A 1 163 GLY 163 158 158 GLY GLY L . n A 1 164 VAL 164 159 159 VAL VAL L . n A 1 165 LEU 165 160 160 LEU LEU L . n A 1 166 ASN 166 161 161 ASN ASN L . n A 1 167 SER 167 162 162 SER SER L . n A 1 168 TRP 168 163 163 TRP TRP L . n A 1 169 THR 169 164 164 THR THR L . n A 1 170 ASP 170 165 165 ASP ASP L . n A 1 171 GLN 171 166 166 GLN GLN L . n A 1 172 ASP 172 167 167 ASP ASP L . n A 1 173 SER 173 168 168 SER SER L . n A 1 174 LYS 174 169 169 LYS LYS L . n A 1 175 ASP 175 170 170 ASP ASP L . n A 1 176 SER 176 171 171 SER SER L . n A 1 177 THR 177 172 172 THR THR L . n A 1 178 TYR 178 173 173 TYR TYR L . n A 1 179 SER 179 174 174 SER SER L . n A 1 180 MET 180 175 175 MET MET L . n A 1 181 SER 181 176 176 SER SER L . n A 1 182 SER 182 177 177 SER SER L . n A 1 183 THR 183 178 178 THR THR L . n A 1 184 LEU 184 179 179 LEU LEU L . n A 1 185 THR 185 180 180 THR THR L . n A 1 186 LEU 186 181 181 LEU LEU L . n A 1 187 THR 187 182 182 THR THR L . n A 1 188 LYS 188 183 183 LYS LYS L . n A 1 189 ASP 189 184 184 ASP ASP L . n A 1 190 GLU 190 185 185 GLU GLU L . n A 1 191 TYR 191 186 186 TYR TYR L . n A 1 192 GLU 192 187 187 GLU GLU L . n A 1 193 ARG 193 188 188 ARG ARG L . n A 1 194 HIS 194 189 189 HIS HIS L . n A 1 195 ASN 195 190 190 ASN ASN L . n A 1 196 SER 196 191 191 SER SER L . n A 1 197 TYR 197 192 192 TYR TYR L . n A 1 198 THR 198 193 193 THR THR L . n A 1 199 CYS 199 194 194 CYS CYS L . n A 1 200 GLU 200 195 195 GLU GLU L . n A 1 201 ALA 201 196 196 ALA ALA L . n A 1 202 THR 202 197 197 THR THR L . n A 1 203 HIS 203 198 198 HIS HIS L . n A 1 204 LYS 204 199 199 LYS LYS L . n A 1 205 THR 205 200 200 THR THR L . n A 1 206 SER 206 201 201 SER SER L . n A 1 207 THR 207 202 202 THR THR L . n A 1 208 SER 208 203 203 SER SER L . n A 1 209 PRO 209 204 204 PRO PRO L . n A 1 210 ILE 210 205 205 ILE ILE L . n A 1 211 VAL 211 206 206 VAL VAL L . n A 1 212 LYS 212 207 207 LYS LYS L . n A 1 213 SER 213 208 208 SER SER L . n A 1 214 PHE 214 209 209 PHE PHE L . n A 1 215 ASN 215 210 210 ASN ASN L . n A 1 216 ARG 216 211 211 ARG ARG L . n A 1 217 ASN 217 212 212 ASN ASN L . n A 1 218 GLU 218 213 213 GLU GLU L . n A 1 219 CYS 219 214 214 CYS CYS L . n B 2 1 GLU 1 1 1 GLU GLU H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 LYS 3 3 3 LYS LYS H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 GLN 5 5 5 GLN GLN H . n B 2 6 GLU 6 6 6 GLU GLU H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 ALA 9 9 9 ALA ALA H . n B 2 10 GLU 10 10 10 GLU GLU H . n B 2 11 LEU 11 11 11 LEU LEU H . n B 2 12 VAL 12 12 12 VAL VAL H . n B 2 13 ARG 13 13 13 ARG ARG H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 GLY 15 15 15 GLY GLY H . n B 2 16 ALA 16 16 16 ALA ALA H . n B 2 17 SER 17 17 17 SER SER H . n B 2 18 VAL 18 18 18 VAL VAL H . n B 2 19 LYS 19 19 19 LYS LYS H . n B 2 20 LEU 20 20 20 LEU LEU H . n B 2 21 SER 21 21 21 SER SER H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 LYS 23 23 23 LYS LYS H . n B 2 24 THR 24 24 24 THR THR H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 TYR 27 27 27 TYR TYR H . n B 2 28 ILE 28 28 28 ILE ILE H . n B 2 29 PHE 29 29 29 PHE PHE H . n B 2 30 THR 30 30 30 THR THR H . n B 2 31 SER 31 31 31 SER SER H . n B 2 32 TYR 32 32 32 TYR TYR H . n B 2 33 TRP 33 33 33 TRP TRP H . n B 2 34 ILE 34 34 34 ILE ILE H . n B 2 35 HIS 35 35 35 HIS HIS H . n B 2 36 TRP 36 36 36 TRP TRP H . n B 2 37 VAL 37 37 37 VAL VAL H . n B 2 38 LYS 38 38 38 LYS LYS H . n B 2 39 GLN 39 39 39 GLN GLN H . n B 2 40 ARG 40 40 40 ARG ARG H . n B 2 41 ALA 41 41 41 ALA ALA H . n B 2 42 ALA 42 42 42 ALA ALA H . n B 2 43 ALA 43 43 43 ALA ALA H . n B 2 44 GLY 44 44 44 GLY GLY H . n B 2 45 LEU 45 45 45 LEU LEU H . n B 2 46 GLU 46 46 46 GLU GLU H . n B 2 47 TRP 47 47 47 TRP TRP H . n B 2 48 ILE 48 48 48 ILE ILE H . n B 2 49 ALA 49 49 49 ALA ALA H . n B 2 50 ARG 50 50 50 ARG ARG H . n B 2 51 ILE 51 51 51 ILE ILE H . n B 2 52 TYR 52 52 52 TYR TYR H . n B 2 53 PRO 53 52 52 PRO PRO H A n B 2 54 GLY 54 53 53 GLY GLY H . n B 2 55 THR 55 54 54 THR THR H . n B 2 56 GLY 56 55 55 GLY GLY H . n B 2 57 SER 57 56 56 SER SER H . n B 2 58 SER 58 57 57 SER SER H . n B 2 59 TYR 59 58 58 TYR TYR H . n B 2 60 TYR 60 59 59 TYR TYR H . n B 2 61 ASN 61 60 60 ASN ASN H . n B 2 62 VAL 62 61 61 VAL VAL H . n B 2 63 LYS 63 62 62 LYS LYS H . n B 2 64 PHE 64 63 63 PHE PHE H . n B 2 65 LYS 65 64 64 LYS LYS H . n B 2 66 GLY 66 65 65 GLY GLY H . n B 2 67 LYS 67 66 66 LYS LYS H . n B 2 68 ALA 68 67 67 ALA ALA H . n B 2 69 THR 69 68 68 THR THR H . n B 2 70 LEU 70 69 69 LEU LEU H . n B 2 71 THR 71 70 70 THR THR H . n B 2 72 ALA 72 71 71 ALA ALA H . n B 2 73 ASP 73 72 72 ASP ASP H . n B 2 74 LYS 74 73 73 LYS LYS H . n B 2 75 SER 75 74 74 SER SER H . n B 2 76 SER 76 75 75 SER SER H . n B 2 77 SER 77 76 76 SER SER H . n B 2 78 THR 78 77 77 THR THR H . n B 2 79 ALA 79 78 78 ALA ALA H . n B 2 80 TYR 80 79 79 TYR TYR H . n B 2 81 MET 81 80 80 MET MET H . n B 2 82 GLN 82 81 81 GLN GLN H . n B 2 83 LEU 83 82 82 LEU LEU H . n B 2 84 SER 84 82 82 SER SER H A n B 2 85 SER 85 82 82 SER SER H B n B 2 86 LEU 86 82 82 LEU LEU H C n B 2 87 LYS 87 83 83 LYS LYS H . n B 2 88 SER 88 84 84 SER SER H . n B 2 89 ASP 89 85 85 ASP ASP H . n B 2 90 ASP 90 86 86 ASP ASP H . n B 2 91 SER 91 87 87 SER SER H . n B 2 92 ALA 92 88 88 ALA ALA H . n B 2 93 VAL 93 89 89 VAL VAL H . n B 2 94 TYR 94 90 90 TYR TYR H . n B 2 95 PHE 95 91 91 PHE PHE H . n B 2 96 CYS 96 92 92 CYS CYS H . n B 2 97 VAL 97 93 93 VAL VAL H . n B 2 98 ARG 98 94 94 ARG ARG H . n B 2 99 TRP 99 95 95 TRP TRP H . n B 2 100 GLY 100 96 96 GLY GLY H . n B 2 101 PHE 101 97 97 PHE PHE H . n B 2 102 ILE 102 98 98 ILE ILE H . n B 2 103 PRO 103 99 99 PRO PRO H . n B 2 104 VAL 104 100 100 VAL VAL H . n B 2 105 ARG 105 100 100 ARG ARG H A n B 2 106 GLU 106 100 100 GLU GLU H B n B 2 107 ASP 107 100 100 ASP ASP H C n B 2 108 TYR 108 100 100 TYR TYR H D n B 2 109 VAL 109 100 100 VAL VAL H E n B 2 110 LEU 110 100 100 LEU LEU H F n B 2 111 ASP 111 101 101 ASP ASP H . n B 2 112 TYR 112 102 102 TYR TYR H . n B 2 113 TRP 113 103 103 TRP TRP H . n B 2 114 GLY 114 104 104 GLY GLY H . n B 2 115 GLN 115 105 105 GLN GLN H . n B 2 116 GLY 116 106 106 GLY GLY H . n B 2 117 THR 117 107 107 THR THR H . n B 2 118 LEU 118 108 108 LEU LEU H . n B 2 119 VAL 119 109 109 VAL VAL H . n B 2 120 THR 120 110 110 THR THR H . n B 2 121 VAL 121 111 111 VAL VAL H . n B 2 122 SER 122 112 112 SER SER H . n B 2 123 SER 123 113 113 SER SER H . n B 2 124 ALA 124 114 114 ALA ALA H . n B 2 125 LYS 125 115 115 LYS LYS H . n B 2 126 THR 126 116 116 THR THR H . n B 2 127 THR 127 117 117 THR THR H . n B 2 128 ALA 128 118 118 ALA ALA H . n B 2 129 PRO 129 119 119 PRO PRO H . n B 2 130 SER 130 120 120 SER SER H . n B 2 131 VAL 131 121 121 VAL VAL H . n B 2 132 TYR 132 122 122 TYR TYR H . n B 2 133 PRO 133 123 123 PRO PRO H . n B 2 134 LEU 134 124 124 LEU LEU H . n B 2 135 ALA 135 125 125 ALA ALA H . n B 2 136 PRO 136 126 126 PRO PRO H . n B 2 137 VAL 137 127 127 VAL VAL H . n B 2 138 CYS 138 128 128 CYS CYS H . n B 2 139 GLY 139 129 129 GLY GLY H . n B 2 140 ASP 140 130 130 ASP ASP H . n B 2 141 THR 141 131 131 THR THR H . n B 2 142 THR 142 132 132 THR THR H . n B 2 143 GLY 143 133 133 GLY GLY H . n B 2 144 SER 144 134 134 SER SER H . n B 2 145 SER 145 135 135 SER SER H . n B 2 146 VAL 146 136 136 VAL VAL H . n B 2 147 THR 147 137 137 THR THR H . n B 2 148 LEU 148 138 138 LEU LEU H . n B 2 149 GLY 149 139 139 GLY GLY H . n B 2 150 CYS 150 140 140 CYS CYS H . n B 2 151 LEU 151 141 141 LEU LEU H . n B 2 152 VAL 152 142 142 VAL VAL H . n B 2 153 LYS 153 143 143 LYS LYS H . n B 2 154 GLY 154 144 144 GLY GLY H . n B 2 155 TYR 155 145 145 TYR TYR H . n B 2 156 PHE 156 146 146 PHE PHE H . n B 2 157 PRO 157 147 147 PRO PRO H . n B 2 158 GLU 158 148 148 GLU GLU H . n B 2 159 PRO 159 149 149 PRO PRO H . n B 2 160 VAL 160 150 150 VAL VAL H . n B 2 161 THR 161 151 151 THR THR H . n B 2 162 LEU 162 152 152 LEU LEU H . n B 2 163 THR 163 154 154 THR THR H . n B 2 164 TRP 164 155 155 TRP TRP H . n B 2 165 ASN 165 160 160 ASN ASN H . n B 2 166 SER 166 161 161 SER SER H . n B 2 167 GLY 167 162 162 GLY GLY H . n B 2 168 SER 168 163 163 SER SER H . n B 2 169 LEU 169 164 164 LEU LEU H . n B 2 170 SER 170 165 165 SER SER H . n B 2 171 SER 171 166 166 SER SER H . n B 2 172 GLY 172 167 167 GLY GLY H . n B 2 173 VAL 173 169 169 VAL VAL H . n B 2 174 HIS 174 170 170 HIS HIS H . n B 2 175 THR 175 171 171 THR THR H . n B 2 176 PHE 176 172 172 PHE PHE H . n B 2 177 PRO 177 173 173 PRO PRO H . n B 2 178 ALA 178 174 174 ALA ALA H . n B 2 179 VAL 179 175 175 VAL VAL H . n B 2 180 LEU 180 176 176 LEU LEU H . n B 2 181 GLN 181 177 177 GLN GLN H . n B 2 182 SER 182 178 178 SER SER H . n B 2 183 ASP 183 181 181 ASP ASP H . n B 2 184 LEU 184 182 182 LEU LEU H . n B 2 185 TYR 185 183 183 TYR TYR H . n B 2 186 THR 186 184 184 THR THR H . n B 2 187 LEU 187 185 185 LEU LEU H . n B 2 188 SER 188 186 186 SER SER H . n B 2 189 SER 189 187 187 SER SER H . n B 2 190 SER 190 188 188 SER SER H . n B 2 191 VAL 191 189 189 VAL VAL H . n B 2 192 THR 192 190 190 THR THR H . n B 2 193 VAL 193 191 191 VAL VAL H . n B 2 194 THR 194 192 192 THR THR H . n B 2 195 SER 195 193 193 SER SER H . n B 2 196 SER 196 194 194 SER SER H . n B 2 197 THR 197 196 196 THR THR H . n B 2 198 TRP 198 197 197 TRP TRP H . n B 2 199 PRO 199 198 198 PRO PRO H . n B 2 200 SER 200 200 200 SER SER H . n B 2 201 GLN 201 201 201 GLN GLN H . n B 2 202 SER 202 202 202 SER SER H . n B 2 203 ILE 203 203 203 ILE ILE H . n B 2 204 THR 204 204 204 THR THR H . n B 2 205 CYS 205 206 206 CYS CYS H . n B 2 206 ASN 206 207 207 ASN ASN H . n B 2 207 VAL 207 208 208 VAL VAL H . n B 2 208 ALA 208 209 209 ALA ALA H . n B 2 209 HIS 209 210 210 HIS HIS H . n B 2 210 PRO 210 211 211 PRO PRO H . n B 2 211 ALA 211 212 212 ALA ALA H . n B 2 212 SER 212 213 213 SER SER H . n B 2 213 SER 213 214 214 SER SER H . n B 2 214 THR 214 215 215 THR THR H . n B 2 215 LYS 215 216 216 LYS LYS H . n B 2 216 VAL 216 217 217 VAL VAL H . n B 2 217 ASP 217 218 218 ASP ASP H . n B 2 218 LYS 218 219 219 LYS LYS H . n B 2 219 LYS 219 220 220 LYS LYS H . n B 2 220 ILE 220 221 221 ILE ILE H . n B 2 221 GLU 221 222 222 GLU GLU H . n B 2 222 PRO 222 223 223 PRO PRO H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PNB 1 551 551 PNB PNB H . D 4 HOH 1 215 6 HOH HOH L . D 4 HOH 2 216 7 HOH HOH L . D 4 HOH 3 217 8 HOH HOH L . D 4 HOH 4 218 10 HOH HOH L . D 4 HOH 5 219 11 HOH HOH L . D 4 HOH 6 220 13 HOH HOH L . D 4 HOH 7 221 14 HOH HOH L . D 4 HOH 8 222 15 HOH HOH L . D 4 HOH 9 223 17 HOH HOH L . D 4 HOH 10 224 18 HOH HOH L . D 4 HOH 11 225 19 HOH HOH L . D 4 HOH 12 226 20 HOH HOH L . D 4 HOH 13 227 23 HOH HOH L . D 4 HOH 14 228 24 HOH HOH L . D 4 HOH 15 229 25 HOH HOH L . D 4 HOH 16 230 26 HOH HOH L . D 4 HOH 17 231 32 HOH HOH L . D 4 HOH 18 232 35 HOH HOH L . D 4 HOH 19 233 36 HOH HOH L . D 4 HOH 20 234 37 HOH HOH L . D 4 HOH 21 235 38 HOH HOH L . D 4 HOH 22 236 39 HOH HOH L . D 4 HOH 23 237 42 HOH HOH L . D 4 HOH 24 238 46 HOH HOH L . D 4 HOH 25 239 48 HOH HOH L . D 4 HOH 26 240 49 HOH HOH L . D 4 HOH 27 241 51 HOH HOH L . D 4 HOH 28 242 52 HOH HOH L . D 4 HOH 29 243 54 HOH HOH L . D 4 HOH 30 244 55 HOH HOH L . D 4 HOH 31 245 57 HOH HOH L . D 4 HOH 32 246 68 HOH HOH L . D 4 HOH 33 247 70 HOH HOH L . D 4 HOH 34 248 71 HOH HOH L . D 4 HOH 35 249 72 HOH HOH L . D 4 HOH 36 250 74 HOH HOH L . D 4 HOH 37 251 78 HOH HOH L . D 4 HOH 38 252 79 HOH HOH L . D 4 HOH 39 253 83 HOH HOH L . D 4 HOH 40 254 85 HOH HOH L . D 4 HOH 41 255 86 HOH HOH L . D 4 HOH 42 256 88 HOH HOH L . D 4 HOH 43 257 89 HOH HOH L . D 4 HOH 44 258 93 HOH HOH L . E 4 HOH 1 552 1 HOH HOH H . E 4 HOH 2 553 2 HOH HOH H . E 4 HOH 3 554 3 HOH HOH H . E 4 HOH 4 555 4 HOH HOH H . E 4 HOH 5 556 5 HOH HOH H . E 4 HOH 6 557 9 HOH HOH H . E 4 HOH 7 558 12 HOH HOH H . E 4 HOH 8 559 16 HOH HOH H . E 4 HOH 9 560 21 HOH HOH H . E 4 HOH 10 561 22 HOH HOH H . E 4 HOH 11 562 27 HOH HOH H . E 4 HOH 12 563 28 HOH HOH H . E 4 HOH 13 564 29 HOH HOH H . E 4 HOH 14 565 30 HOH HOH H . E 4 HOH 15 566 31 HOH HOH H . E 4 HOH 16 567 33 HOH HOH H . E 4 HOH 17 568 34 HOH HOH H . E 4 HOH 18 569 40 HOH HOH H . E 4 HOH 19 570 41 HOH HOH H . E 4 HOH 20 571 43 HOH HOH H . E 4 HOH 21 572 44 HOH HOH H . E 4 HOH 22 573 45 HOH HOH H . E 4 HOH 23 574 47 HOH HOH H . E 4 HOH 24 575 50 HOH HOH H . E 4 HOH 25 576 53 HOH HOH H . E 4 HOH 26 577 56 HOH HOH H . E 4 HOH 27 578 58 HOH HOH H . E 4 HOH 28 579 59 HOH HOH H . E 4 HOH 29 580 60 HOH HOH H . E 4 HOH 30 581 61 HOH HOH H . E 4 HOH 31 582 62 HOH HOH H . E 4 HOH 32 583 63 HOH HOH H . E 4 HOH 33 584 64 HOH HOH H . E 4 HOH 34 585 65 HOH HOH H . E 4 HOH 35 586 66 HOH HOH H . E 4 HOH 36 587 67 HOH HOH H . E 4 HOH 37 588 69 HOH HOH H . E 4 HOH 38 589 73 HOH HOH H . E 4 HOH 39 590 75 HOH HOH H . E 4 HOH 40 591 76 HOH HOH H . E 4 HOH 41 592 77 HOH HOH H . E 4 HOH 42 593 80 HOH HOH H . E 4 HOH 43 594 81 HOH HOH H . E 4 HOH 44 595 82 HOH HOH H . E 4 HOH 45 596 84 HOH HOH H . E 4 HOH 46 597 87 HOH HOH H . E 4 HOH 47 598 90 HOH HOH H . E 4 HOH 48 599 91 HOH HOH H . E 4 HOH 49 600 92 HOH HOH H . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4850 ? 1 MORE -19 ? 1 'SSA (A^2)' 19010 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-10-15 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' 5.2 ? 1 CCP4 'data reduction' . ? 2 X-PLOR 'model building' 3.1 ? 3 X-PLOR refinement 3.1 ? 4 CCP4 'data scaling' . ? 5 X-PLOR phasing 3.1 ? 6 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 L _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 11 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 L _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 11 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 L _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 11 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 135.58 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 20.28 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL L 51 ? ? 70.93 -39.94 2 1 ASP L 60 ? ? -81.27 36.70 3 1 ASN L 212 ? ? -126.82 -72.57 4 1 GLU L 213 ? ? 179.14 159.12 5 1 ALA H 41 ? ? -49.47 84.68 6 1 ALA H 42 ? ? -178.09 34.92 7 1 ALA H 88 ? ? -178.75 -173.53 8 1 CYS H 128 ? ? -148.35 -57.03 9 1 ASP H 130 ? ? -161.13 -39.16 10 1 THR H 131 ? ? 106.28 -45.28 11 1 THR H 132 ? ? 68.79 -87.21 12 1 SER H 134 ? ? 85.00 -56.11 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 4-NITRO-BENZYLPHOSPHONOBUTANOYL-GLYCINE PNB 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1YEC _pdbx_initial_refinement_model.details 'PDB ENTRY 1YEC' #