data_1YR6 # _entry.id 1YR6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YR6 pdb_00001yr6 10.2210/pdb1yr6/pdb RCSB RCSB031836 ? ? WWPDB D_1000031836 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-02-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2014-11-12 5 'Structure model' 1 4 2017-10-11 6 'Structure model' 1 5 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Refinement description' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' chem_comp_atom 3 6 'Structure model' chem_comp_bond 4 6 'Structure model' database_2 5 6 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.name' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YR6 _pdbx_database_status.recvd_initial_deposition_date 2005-02-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YR7 'the same protein in GTP-gamma-S bound form' unspecified PDB 1YR8 'the same protein in GTP bound form' unspecified PDB 1YR9 'the same protein in GDP and PO4 bound form' unspecified PDB 1YRA 'the same protein in GDP bound form' unspecified PDB 1YRB 'the same protein in GDP and Mg bound form' unspecified PDB 2OXR . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gras, S.' 1 'Carpentier, P.' 2 'Armengaud, J.' 3 'Housset, D.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural insights into a new homodimeric self-activated GTPase family.' 'Embo Rep.' 8 569 575 2007 ? UK 1469-221X ? ? 17468740 10.1038/sj.embor.7400958 1 ;Expression, purification, crystallization and preliminary crystallographic analysis of the PAB0955 gene product ; 'Acta Crystallogr.,Sect.F' 61 208 211 2005 ? DK 1744-3091 ? ? ? 10.1107/S1744309105000035 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gras, S.' 1 ? primary 'Chaumont, V.' 2 ? primary 'Fernandez, B.' 3 ? primary 'Carpentier, P.' 4 ? primary 'Charrier-Savournin, F.' 5 ? primary 'Schmitt, S.' 6 ? primary 'Pineau, C.' 7 ? primary 'Flament, D.' 8 ? primary 'Hecker, A.' 9 ? primary 'Forterre, P.' 10 ? primary 'Armengaud, J.' 11 ? primary 'Housset, D.' 12 ? 1 'Gras, S.' 13 ? 1 'Fernandez, B.' 14 ? 1 'Chaumont, V.' 15 ? 1 'Carpentier, P.' 16 ? 1 'Armengaud, J.' 17 ? 1 'Housset, D.' 18 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATP(GTP)binding protein' 30334.795 1 ? ? 'residues 1-248' ? 2 water nat water 18.015 60 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PAB0955 gene product' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRGSHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGP NGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVR FFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKT REGFEDLETLAYEHYCTCGDLT ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGP NGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVR FFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKT REGFEDLETLAYEHYCTCGDLT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 GLY n 1 12 MET n 1 13 ALA n 1 14 SER n 1 15 MET n 1 16 ILE n 1 17 VAL n 1 18 VAL n 1 19 PHE n 1 20 VAL n 1 21 GLY n 1 22 THR n 1 23 ALA n 1 24 GLY n 1 25 SER n 1 26 GLY n 1 27 LYS n 1 28 THR n 1 29 THR n 1 30 LEU n 1 31 THR n 1 32 GLY n 1 33 GLU n 1 34 PHE n 1 35 GLY n 1 36 ARG n 1 37 TYR n 1 38 LEU n 1 39 GLU n 1 40 ASP n 1 41 ASN n 1 42 TYR n 1 43 LYS n 1 44 VAL n 1 45 ALA n 1 46 TYR n 1 47 VAL n 1 48 ASN n 1 49 LEU n 1 50 ASP n 1 51 THR n 1 52 GLY n 1 53 VAL n 1 54 LYS n 1 55 GLU n 1 56 LEU n 1 57 PRO n 1 58 TYR n 1 59 GLU n 1 60 PRO n 1 61 SER n 1 62 ILE n 1 63 ASP n 1 64 VAL n 1 65 ARG n 1 66 GLU n 1 67 PHE n 1 68 VAL n 1 69 THR n 1 70 VAL n 1 71 GLU n 1 72 GLU n 1 73 ILE n 1 74 MET n 1 75 ARG n 1 76 GLU n 1 77 GLY n 1 78 TYR n 1 79 GLY n 1 80 PRO n 1 81 ASN n 1 82 GLY n 1 83 ALA n 1 84 ILE n 1 85 VAL n 1 86 GLU n 1 87 SER n 1 88 TYR n 1 89 ASP n 1 90 ARG n 1 91 LEU n 1 92 MET n 1 93 GLU n 1 94 LYS n 1 95 PHE n 1 96 ASN n 1 97 GLU n 1 98 TYR n 1 99 LEU n 1 100 ASN n 1 101 LYS n 1 102 ILE n 1 103 LEU n 1 104 ARG n 1 105 LEU n 1 106 GLU n 1 107 LYS n 1 108 GLU n 1 109 ASN n 1 110 ASP n 1 111 TYR n 1 112 VAL n 1 113 LEU n 1 114 ILE n 1 115 ASP n 1 116 THR n 1 117 PRO n 1 118 GLY n 1 119 GLN n 1 120 MET n 1 121 GLU n 1 122 THR n 1 123 PHE n 1 124 LEU n 1 125 PHE n 1 126 HIS n 1 127 GLU n 1 128 PHE n 1 129 GLY n 1 130 VAL n 1 131 ARG n 1 132 LEU n 1 133 MET n 1 134 GLU n 1 135 ASN n 1 136 LEU n 1 137 PRO n 1 138 TYR n 1 139 PRO n 1 140 LEU n 1 141 VAL n 1 142 VAL n 1 143 TYR n 1 144 ILE n 1 145 SER n 1 146 ASP n 1 147 PRO n 1 148 GLU n 1 149 ILE n 1 150 LEU n 1 151 LYS n 1 152 LYS n 1 153 PRO n 1 154 ASN n 1 155 ASP n 1 156 TYR n 1 157 CYS n 1 158 PHE n 1 159 VAL n 1 160 ARG n 1 161 PHE n 1 162 PHE n 1 163 ALA n 1 164 LEU n 1 165 LEU n 1 166 ILE n 1 167 ASP n 1 168 LEU n 1 169 ARG n 1 170 LEU n 1 171 GLY n 1 172 ALA n 1 173 THR n 1 174 THR n 1 175 ILE n 1 176 PRO n 1 177 ALA n 1 178 LEU n 1 179 ASN n 1 180 LYS n 1 181 VAL n 1 182 ASP n 1 183 LEU n 1 184 LEU n 1 185 SER n 1 186 GLU n 1 187 GLU n 1 188 GLU n 1 189 LYS n 1 190 GLU n 1 191 ARG n 1 192 HIS n 1 193 ARG n 1 194 LYS n 1 195 TYR n 1 196 PHE n 1 197 GLU n 1 198 ASP n 1 199 ILE n 1 200 ASP n 1 201 TYR n 1 202 LEU n 1 203 THR n 1 204 ALA n 1 205 ARG n 1 206 LEU n 1 207 LYS n 1 208 LEU n 1 209 ASP n 1 210 PRO n 1 211 SER n 1 212 MET n 1 213 GLN n 1 214 GLY n 1 215 LEU n 1 216 MET n 1 217 ALA n 1 218 TYR n 1 219 LYS n 1 220 MET n 1 221 CYS n 1 222 SER n 1 223 MET n 1 224 MET n 1 225 THR n 1 226 GLU n 1 227 VAL n 1 228 LEU n 1 229 PRO n 1 230 PRO n 1 231 VAL n 1 232 ARG n 1 233 VAL n 1 234 LEU n 1 235 TYR n 1 236 LEU n 1 237 SER n 1 238 ALA n 1 239 LYS n 1 240 THR n 1 241 ARG n 1 242 GLU n 1 243 GLY n 1 244 PHE n 1 245 GLU n 1 246 ASP n 1 247 LEU n 1 248 GLU n 1 249 THR n 1 250 LEU n 1 251 ALA n 1 252 TYR n 1 253 GLU n 1 254 HIS n 1 255 TYR n 1 256 CYS n 1 257 THR n 1 258 CYS n 1 259 GLY n 1 260 ASP n 1 261 LEU n 1 262 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene PAB0955 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus abyssi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 29292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(DE3)pLys' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCRT7/NT-topo _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 487 ? ? ? A . n A 1 2 ARG 2 488 ? ? ? A . n A 1 3 GLY 3 489 ? ? ? A . n A 1 4 SER 4 490 ? ? ? A . n A 1 5 HIS 5 491 ? ? ? A . n A 1 6 HIS 6 492 ? ? ? A . n A 1 7 HIS 7 493 ? ? ? A . n A 1 8 HIS 8 494 ? ? ? A . n A 1 9 HIS 9 495 ? ? ? A . n A 1 10 HIS 10 496 ? ? ? A . n A 1 11 GLY 11 497 497 GLY GLY A . n A 1 12 MET 12 498 498 MET MET A . n A 1 13 ALA 13 499 499 ALA ALA A . n A 1 14 SER 14 500 500 SER SER A . n A 1 15 MET 15 1 1 MET MET A . n A 1 16 ILE 16 2 2 ILE ILE A . n A 1 17 VAL 17 3 3 VAL VAL A . n A 1 18 VAL 18 4 4 VAL VAL A . n A 1 19 PHE 19 5 5 PHE PHE A . n A 1 20 VAL 20 6 6 VAL VAL A . n A 1 21 GLY 21 7 7 GLY GLY A . n A 1 22 THR 22 8 8 THR THR A . n A 1 23 ALA 23 9 9 ALA ALA A . n A 1 24 GLY 24 10 10 GLY GLY A . n A 1 25 SER 25 11 11 SER SER A . n A 1 26 GLY 26 12 12 GLY GLY A . n A 1 27 LYS 27 13 13 LYS LYS A . n A 1 28 THR 28 14 14 THR THR A . n A 1 29 THR 29 15 15 THR THR A . n A 1 30 LEU 30 16 16 LEU LEU A . n A 1 31 THR 31 17 17 THR THR A . n A 1 32 GLY 32 18 18 GLY GLY A . n A 1 33 GLU 33 19 19 GLU GLU A . n A 1 34 PHE 34 20 20 PHE PHE A . n A 1 35 GLY 35 21 21 GLY GLY A . n A 1 36 ARG 36 22 22 ARG ARG A . n A 1 37 TYR 37 23 23 TYR TYR A . n A 1 38 LEU 38 24 24 LEU LEU A . n A 1 39 GLU 39 25 25 GLU GLU A . n A 1 40 ASP 40 26 26 ASP ASP A . n A 1 41 ASN 41 27 27 ASN ASN A . n A 1 42 TYR 42 28 28 TYR TYR A . n A 1 43 LYS 43 29 29 LYS LYS A . n A 1 44 VAL 44 30 30 VAL VAL A . n A 1 45 ALA 45 31 31 ALA ALA A . n A 1 46 TYR 46 32 32 TYR TYR A . n A 1 47 VAL 47 33 33 VAL VAL A . n A 1 48 ASN 48 34 34 ASN ASN A . n A 1 49 LEU 49 35 35 LEU LEU A . n A 1 50 ASP 50 36 36 ASP ASP A . n A 1 51 THR 51 37 37 THR THR A . n A 1 52 GLY 52 38 38 GLY GLY A . n A 1 53 VAL 53 39 39 VAL VAL A . n A 1 54 LYS 54 40 40 LYS LYS A . n A 1 55 GLU 55 41 41 GLU GLU A . n A 1 56 LEU 56 42 42 LEU LEU A . n A 1 57 PRO 57 43 43 PRO PRO A . n A 1 58 TYR 58 44 44 TYR TYR A . n A 1 59 GLU 59 45 45 GLU GLU A . n A 1 60 PRO 60 46 46 PRO PRO A . n A 1 61 SER 61 47 47 SER SER A . n A 1 62 ILE 62 48 48 ILE ILE A . n A 1 63 ASP 63 49 49 ASP ASP A . n A 1 64 VAL 64 50 50 VAL VAL A . n A 1 65 ARG 65 51 51 ARG ARG A . n A 1 66 GLU 66 52 52 GLU GLU A . n A 1 67 PHE 67 53 53 PHE PHE A . n A 1 68 VAL 68 54 54 VAL VAL A . n A 1 69 THR 69 55 55 THR THR A . n A 1 70 VAL 70 56 56 VAL VAL A . n A 1 71 GLU 71 57 57 GLU GLU A . n A 1 72 GLU 72 58 58 GLU GLU A . n A 1 73 ILE 73 59 59 ILE ILE A . n A 1 74 MET 74 60 60 MET MET A . n A 1 75 ARG 75 61 61 ARG ARG A . n A 1 76 GLU 76 62 62 GLU GLU A . n A 1 77 GLY 77 63 63 GLY GLY A . n A 1 78 TYR 78 64 64 TYR TYR A . n A 1 79 GLY 79 65 65 GLY GLY A . n A 1 80 PRO 80 66 66 PRO PRO A . n A 1 81 ASN 81 67 67 ASN ASN A . n A 1 82 GLY 82 68 68 GLY GLY A . n A 1 83 ALA 83 69 69 ALA ALA A . n A 1 84 ILE 84 70 70 ILE ILE A . n A 1 85 VAL 85 71 71 VAL VAL A . n A 1 86 GLU 86 72 72 GLU GLU A . n A 1 87 SER 87 73 73 SER SER A . n A 1 88 TYR 88 74 74 TYR TYR A . n A 1 89 ASP 89 75 75 ASP ASP A . n A 1 90 ARG 90 76 76 ARG ARG A . n A 1 91 LEU 91 77 77 LEU LEU A . n A 1 92 MET 92 78 78 MET MET A . n A 1 93 GLU 93 79 79 GLU GLU A . n A 1 94 LYS 94 80 80 LYS LYS A . n A 1 95 PHE 95 81 81 PHE PHE A . n A 1 96 ASN 96 82 82 ASN ASN A . n A 1 97 GLU 97 83 83 GLU GLU A . n A 1 98 TYR 98 84 84 TYR TYR A . n A 1 99 LEU 99 85 85 LEU LEU A . n A 1 100 ASN 100 86 86 ASN ASN A . n A 1 101 LYS 101 87 87 LYS LYS A . n A 1 102 ILE 102 88 88 ILE ILE A . n A 1 103 LEU 103 89 89 LEU LEU A . n A 1 104 ARG 104 90 90 ARG ARG A . n A 1 105 LEU 105 91 91 LEU LEU A . n A 1 106 GLU 106 92 92 GLU GLU A . n A 1 107 LYS 107 93 93 LYS LYS A . n A 1 108 GLU 108 94 94 GLU GLU A . n A 1 109 ASN 109 95 95 ASN ASN A . n A 1 110 ASP 110 96 96 ASP ASP A . n A 1 111 TYR 111 97 97 TYR TYR A . n A 1 112 VAL 112 98 98 VAL VAL A . n A 1 113 LEU 113 99 99 LEU LEU A . n A 1 114 ILE 114 100 100 ILE ILE A . n A 1 115 ASP 115 101 101 ASP ASP A . n A 1 116 THR 116 102 102 THR THR A . n A 1 117 PRO 117 103 103 PRO PRO A . n A 1 118 GLY 118 104 104 GLY GLY A . n A 1 119 GLN 119 105 105 GLN GLN A . n A 1 120 MET 120 106 106 MET MET A . n A 1 121 GLU 121 107 107 GLU GLU A . n A 1 122 THR 122 108 108 THR THR A . n A 1 123 PHE 123 109 109 PHE PHE A . n A 1 124 LEU 124 110 110 LEU LEU A . n A 1 125 PHE 125 111 111 PHE PHE A . n A 1 126 HIS 126 112 112 HIS HIS A . n A 1 127 GLU 127 113 113 GLU GLU A . n A 1 128 PHE 128 114 114 PHE PHE A . n A 1 129 GLY 129 115 115 GLY GLY A . n A 1 130 VAL 130 116 116 VAL VAL A . n A 1 131 ARG 131 117 117 ARG ARG A . n A 1 132 LEU 132 118 118 LEU LEU A . n A 1 133 MET 133 119 119 MET MET A . n A 1 134 GLU 134 120 120 GLU GLU A . n A 1 135 ASN 135 121 121 ASN ASN A . n A 1 136 LEU 136 122 122 LEU LEU A . n A 1 137 PRO 137 123 123 PRO PRO A . n A 1 138 TYR 138 124 124 TYR TYR A . n A 1 139 PRO 139 125 125 PRO PRO A . n A 1 140 LEU 140 126 126 LEU LEU A . n A 1 141 VAL 141 127 127 VAL VAL A . n A 1 142 VAL 142 128 128 VAL VAL A . n A 1 143 TYR 143 129 129 TYR TYR A . n A 1 144 ILE 144 130 130 ILE ILE A . n A 1 145 SER 145 131 131 SER SER A . n A 1 146 ASP 146 132 132 ASP ASP A . n A 1 147 PRO 147 133 133 PRO PRO A . n A 1 148 GLU 148 134 134 GLU GLU A . n A 1 149 ILE 149 135 135 ILE ILE A . n A 1 150 LEU 150 136 136 LEU LEU A . n A 1 151 LYS 151 137 137 LYS LYS A . n A 1 152 LYS 152 138 138 LYS LYS A . n A 1 153 PRO 153 139 139 PRO PRO A . n A 1 154 ASN 154 140 140 ASN ASN A . n A 1 155 ASP 155 141 141 ASP ASP A . n A 1 156 TYR 156 142 142 TYR TYR A . n A 1 157 CYS 157 143 143 CYS CYS A . n A 1 158 PHE 158 144 144 PHE PHE A . n A 1 159 VAL 159 145 145 VAL VAL A . n A 1 160 ARG 160 146 146 ARG ARG A . n A 1 161 PHE 161 147 147 PHE PHE A . n A 1 162 PHE 162 148 148 PHE PHE A . n A 1 163 ALA 163 149 149 ALA ALA A . n A 1 164 LEU 164 150 150 LEU LEU A . n A 1 165 LEU 165 151 151 LEU LEU A . n A 1 166 ILE 166 152 152 ILE ILE A . n A 1 167 ASP 167 153 153 ASP ASP A . n A 1 168 LEU 168 154 154 LEU LEU A . n A 1 169 ARG 169 155 155 ARG ARG A . n A 1 170 LEU 170 156 156 LEU LEU A . n A 1 171 GLY 171 157 157 GLY GLY A . n A 1 172 ALA 172 158 158 ALA ALA A . n A 1 173 THR 173 159 159 THR THR A . n A 1 174 THR 174 160 160 THR THR A . n A 1 175 ILE 175 161 161 ILE ILE A . n A 1 176 PRO 176 162 162 PRO PRO A . n A 1 177 ALA 177 163 163 ALA ALA A . n A 1 178 LEU 178 164 164 LEU LEU A . n A 1 179 ASN 179 165 165 ASN ASN A . n A 1 180 LYS 180 166 166 LYS LYS A . n A 1 181 VAL 181 167 167 VAL VAL A . n A 1 182 ASP 182 168 168 ASP ASP A . n A 1 183 LEU 183 169 169 LEU LEU A . n A 1 184 LEU 184 170 170 LEU LEU A . n A 1 185 SER 185 171 171 SER SER A . n A 1 186 GLU 186 172 172 GLU GLU A . n A 1 187 GLU 187 173 173 GLU GLU A . n A 1 188 GLU 188 174 174 GLU GLU A . n A 1 189 LYS 189 175 175 LYS LYS A . n A 1 190 GLU 190 176 176 GLU GLU A . n A 1 191 ARG 191 177 177 ARG ARG A . n A 1 192 HIS 192 178 178 HIS HIS A . n A 1 193 ARG 193 179 179 ARG ARG A . n A 1 194 LYS 194 180 180 LYS LYS A . n A 1 195 TYR 195 181 181 TYR TYR A . n A 1 196 PHE 196 182 182 PHE PHE A . n A 1 197 GLU 197 183 183 GLU GLU A . n A 1 198 ASP 198 184 184 ASP ASP A . n A 1 199 ILE 199 185 185 ILE ILE A . n A 1 200 ASP 200 186 186 ASP ASP A . n A 1 201 TYR 201 187 187 TYR TYR A . n A 1 202 LEU 202 188 188 LEU LEU A . n A 1 203 THR 203 189 189 THR THR A . n A 1 204 ALA 204 190 190 ALA ALA A . n A 1 205 ARG 205 191 191 ARG ARG A . n A 1 206 LEU 206 192 192 LEU LEU A . n A 1 207 LYS 207 193 193 LYS LYS A . n A 1 208 LEU 208 194 194 LEU LEU A . n A 1 209 ASP 209 195 195 ASP ASP A . n A 1 210 PRO 210 196 196 PRO PRO A . n A 1 211 SER 211 197 197 SER SER A . n A 1 212 MET 212 198 198 MET MET A . n A 1 213 GLN 213 199 199 GLN GLN A . n A 1 214 GLY 214 200 200 GLY GLY A . n A 1 215 LEU 215 201 201 LEU LEU A . n A 1 216 MET 216 202 202 MET MET A . n A 1 217 ALA 217 203 203 ALA ALA A . n A 1 218 TYR 218 204 204 TYR TYR A . n A 1 219 LYS 219 205 205 LYS LYS A . n A 1 220 MET 220 206 206 MET MET A . n A 1 221 CYS 221 207 207 CYS CYS A . n A 1 222 SER 222 208 208 SER SER A . n A 1 223 MET 223 209 209 MET MET A . n A 1 224 MET 224 210 210 MET MET A . n A 1 225 THR 225 211 211 THR THR A . n A 1 226 GLU 226 212 212 GLU GLU A . n A 1 227 VAL 227 213 213 VAL VAL A . n A 1 228 LEU 228 214 214 LEU LEU A . n A 1 229 PRO 229 215 215 PRO PRO A . n A 1 230 PRO 230 216 216 PRO PRO A . n A 1 231 VAL 231 217 217 VAL VAL A . n A 1 232 ARG 232 218 218 ARG ARG A . n A 1 233 VAL 233 219 219 VAL VAL A . n A 1 234 LEU 234 220 220 LEU LEU A . n A 1 235 TYR 235 221 221 TYR TYR A . n A 1 236 LEU 236 222 222 LEU LEU A . n A 1 237 SER 237 223 223 SER SER A . n A 1 238 ALA 238 224 224 ALA ALA A . n A 1 239 LYS 239 225 225 LYS LYS A . n A 1 240 THR 240 226 226 THR THR A . n A 1 241 ARG 241 227 227 ARG ARG A . n A 1 242 GLU 242 228 228 GLU GLU A . n A 1 243 GLY 243 229 229 GLY GLY A . n A 1 244 PHE 244 230 230 PHE PHE A . n A 1 245 GLU 245 231 231 GLU GLU A . n A 1 246 ASP 246 232 232 ASP ASP A . n A 1 247 LEU 247 233 233 LEU LEU A . n A 1 248 GLU 248 234 234 GLU GLU A . n A 1 249 THR 249 235 235 THR THR A . n A 1 250 LEU 250 236 236 LEU LEU A . n A 1 251 ALA 251 237 237 ALA ALA A . n A 1 252 TYR 252 238 238 TYR TYR A . n A 1 253 GLU 253 239 239 GLU GLU A . n A 1 254 HIS 254 240 240 HIS HIS A . n A 1 255 TYR 255 241 241 TYR TYR A . n A 1 256 CYS 256 242 242 CYS CYS A . n A 1 257 THR 257 243 243 THR THR A . n A 1 258 CYS 258 244 244 CYS CYS A . n A 1 259 GLY 259 245 ? ? ? A . n A 1 260 ASP 260 246 ? ? ? A . n A 1 261 LEU 261 247 ? ? ? A . n A 1 262 THR 262 248 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 501 1 HOH HOH A . B 2 HOH 2 502 2 HOH HOH A . B 2 HOH 3 503 3 HOH HOH A . B 2 HOH 4 504 4 HOH HOH A . B 2 HOH 5 505 5 HOH HOH A . B 2 HOH 6 506 6 HOH HOH A . B 2 HOH 7 507 7 HOH HOH A . B 2 HOH 8 508 8 HOH HOH A . B 2 HOH 9 509 9 HOH HOH A . B 2 HOH 10 510 10 HOH HOH A . B 2 HOH 11 511 11 HOH HOH A . B 2 HOH 12 512 12 HOH HOH A . B 2 HOH 13 513 13 HOH HOH A . B 2 HOH 14 514 14 HOH HOH A . B 2 HOH 15 515 15 HOH HOH A . B 2 HOH 16 516 16 HOH HOH A . B 2 HOH 17 517 17 HOH HOH A . B 2 HOH 18 518 18 HOH HOH A . B 2 HOH 19 519 19 HOH HOH A . B 2 HOH 20 520 20 HOH HOH A . B 2 HOH 21 521 21 HOH HOH A . B 2 HOH 22 522 22 HOH HOH A . B 2 HOH 23 523 23 HOH HOH A . B 2 HOH 24 524 24 HOH HOH A . B 2 HOH 25 525 25 HOH HOH A . B 2 HOH 26 526 26 HOH HOH A . B 2 HOH 27 527 27 HOH HOH A . B 2 HOH 28 528 28 HOH HOH A . B 2 HOH 29 529 29 HOH HOH A . B 2 HOH 30 530 30 HOH HOH A . B 2 HOH 31 531 31 HOH HOH A . B 2 HOH 32 532 32 HOH HOH A . B 2 HOH 33 533 33 HOH HOH A . B 2 HOH 34 534 34 HOH HOH A . B 2 HOH 35 535 35 HOH HOH A . B 2 HOH 36 536 36 HOH HOH A . B 2 HOH 37 537 37 HOH HOH A . B 2 HOH 38 538 38 HOH HOH A . B 2 HOH 39 539 39 HOH HOH A . B 2 HOH 40 540 40 HOH HOH A . B 2 HOH 41 541 41 HOH HOH A . B 2 HOH 42 542 42 HOH HOH A . B 2 HOH 43 543 43 HOH HOH A . B 2 HOH 44 544 44 HOH HOH A . B 2 HOH 45 545 45 HOH HOH A . B 2 HOH 46 546 46 HOH HOH A . B 2 HOH 47 547 47 HOH HOH A . B 2 HOH 48 548 48 HOH HOH A . B 2 HOH 49 549 49 HOH HOH A . B 2 HOH 50 550 50 HOH HOH A . B 2 HOH 51 551 51 HOH HOH A . B 2 HOH 52 552 52 HOH HOH A . B 2 HOH 53 553 53 HOH HOH A . B 2 HOH 54 554 54 HOH HOH A . B 2 HOH 55 555 55 HOH HOH A . B 2 HOH 56 556 56 HOH HOH A . B 2 HOH 57 557 57 HOH HOH A . B 2 HOH 58 558 58 HOH HOH A . B 2 HOH 59 559 59 HOH HOH A . B 2 HOH 60 560 60 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 ProDC 'data collection' . ? 2 XDS 'data scaling' . ? 3 SOLVE phasing . ? 4 # _cell.entry_id 1YR6 _cell.length_a 60.290 _cell.length_b 60.290 _cell.length_c 117.110 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1YR6 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YR6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '15% PEG 4000, 3% dioxane, 0.1M tri-sodium citrate dihydrate, 20mM DTT, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-05-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirror _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.933 # _reflns.entry_id 1YR6 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 50 _reflns.number_all 13967 _reflns.number_obs 13737 _reflns.percent_possible_obs 98.34 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rsym_value 0.054 _reflns.pdbx_netI_over_sigmaI 22.46 _reflns.B_iso_Wilson_estimate 40.1 _reflns.pdbx_redundancy 10.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.23 _reflns_shell.percent_possible_all 95 _reflns_shell.Rmerge_I_obs 0.328 _reflns_shell.pdbx_Rsym_value 0.328 _reflns_shell.meanI_over_sigI_obs 5.31 _reflns_shell.pdbx_redundancy 7.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1338 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1YR6 _refine.ls_number_reflns_obs 13681 _refine.ls_number_reflns_all 13967 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 2.15 _refine.ls_percent_reflns_obs 98.35 _refine.ls_R_factor_obs 0.23535 _refine.ls_R_factor_all 0.23535 _refine.ls_R_factor_R_work 0.231 _refine.ls_R_factor_R_free 0.299 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 685 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc .942 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 53.557 _refine.aniso_B[1][1] 3.34 _refine.aniso_B[2][2] 3.34 _refine.aniso_B[3][3] -5.00 _refine.aniso_B[1][2] 1.67 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii .80 _refine.pdbx_solvent_shrinkage_radii .80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R .316 _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML .143 _refine.overall_SU_B 5.358 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2011 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 2071 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d .010 .022 ? 2055 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.246 1.994 ? 2779 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.078 5.000 ? 247 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.149 24.021 ? 97 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.033 15.000 ? 371 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.756 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr .082 .200 ? 308 'X-RAY DIFFRACTION' ? r_gen_planes_refined .004 .020 ? 1547 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined .271 .300 ? 993 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined .333 .500 ? 1409 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined .263 .500 ? 172 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined .308 .300 ? 45 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined .536 .500 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.177 2.000 ? 1266 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.003 3.000 ? 2007 'X-RAY DIFFRACTION' ? r_scbond_it 1.544 3.000 ? 884 'X-RAY DIFFRACTION' ? r_scangle_it 2.173 4.000 ? 772 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 15 _refine_ls_shell.d_res_high 2.150 _refine_ls_shell.d_res_low 2.224 _refine_ls_shell.number_reflns_R_work 1243 _refine_ls_shell.R_factor_R_work 0.251 _refine_ls_shell.percent_reflns_obs 94.74 _refine_ls_shell.R_factor_R_free 0.33 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_obs 1338 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1YR6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YR6 _struct.title 'PAB0955 crystal structure : a GTPase in Apo form from Pyrococcus abyssi' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YR6 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'GTP binding protein, GTPase, P-loop, Rossmann Fold, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CAB50343 _struct_ref.pdbx_db_accession 5458856 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEK FNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATT IPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH YCTCGDLT ; _struct_ref.pdbx_align_begin 30 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YR6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 15 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 262 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5458856 _struct_ref_seq.db_align_beg 30 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 277 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 248 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YR6 MET A 1 ? GB 5458856 ? ? 'expression tag' 487 1 1 1YR6 ARG A 2 ? GB 5458856 ? ? 'expression tag' 488 2 1 1YR6 GLY A 3 ? GB 5458856 ? ? 'expression tag' 489 3 1 1YR6 SER A 4 ? GB 5458856 ? ? 'expression tag' 490 4 1 1YR6 HIS A 5 ? GB 5458856 ? ? 'expression tag' 491 5 1 1YR6 HIS A 6 ? GB 5458856 ? ? 'expression tag' 492 6 1 1YR6 HIS A 7 ? GB 5458856 ? ? 'expression tag' 493 7 1 1YR6 HIS A 8 ? GB 5458856 ? ? 'expression tag' 494 8 1 1YR6 HIS A 9 ? GB 5458856 ? ? 'expression tag' 495 9 1 1YR6 HIS A 10 ? GB 5458856 ? ? 'expression tag' 496 10 1 1YR6 GLY A 11 ? GB 5458856 ? ? 'expression tag' 497 11 1 1YR6 MET A 12 ? GB 5458856 ? ? 'expression tag' 498 12 1 1YR6 ALA A 13 ? GB 5458856 ? ? 'expression tag' 499 13 1 1YR6 SER A 14 ? GB 5458856 ? ? 'expression tag' 500 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4160 ? 1 MORE -31 ? 1 'SSA (A^2)' 21320 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a dimer generated by the two fold axis : y, x, -z' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 26 ? GLU A 39 ? GLY A 12 GLU A 25 1 ? 14 HELX_P HELX_P2 2 ARG A 65 ? PHE A 67 ? ARG A 51 PHE A 53 5 ? 3 HELX_P HELX_P3 3 THR A 69 ? GLU A 76 ? THR A 55 GLU A 62 1 ? 8 HELX_P HELX_P4 4 GLY A 79 ? MET A 92 ? GLY A 65 MET A 78 1 ? 14 HELX_P HELX_P5 5 LYS A 94 ? GLU A 106 ? LYS A 80 GLU A 92 1 ? 13 HELX_P HELX_P6 6 MET A 120 ? PHE A 125 ? MET A 106 PHE A 111 1 ? 6 HELX_P HELX_P7 7 HIS A 126 ? LEU A 136 ? HIS A 112 LEU A 122 1 ? 11 HELX_P HELX_P8 8 ASP A 146 ? LEU A 150 ? ASP A 132 LEU A 136 5 ? 5 HELX_P HELX_P9 9 LYS A 152 ? GLY A 171 ? LYS A 138 GLY A 157 1 ? 20 HELX_P HELX_P10 10 LYS A 180 ? LEU A 184 ? LYS A 166 LEU A 170 5 ? 5 HELX_P HELX_P11 11 GLU A 186 ? ASP A 198 ? GLU A 172 ASP A 184 1 ? 13 HELX_P HELX_P12 12 TYR A 201 ? LEU A 206 ? TYR A 187 LEU A 192 1 ? 6 HELX_P HELX_P13 13 SER A 211 ? CYS A 221 ? SER A 197 CYS A 207 1 ? 11 HELX_P HELX_P14 14 GLY A 243 ? CYS A 258 ? GLY A 229 CYS A 244 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 62 ? ASP A 63 ? ILE A 48 ASP A 49 A 2 VAL A 44 ? ASN A 48 ? VAL A 30 ASN A 34 A 3 TYR A 111 ? ASP A 115 ? TYR A 97 ASP A 101 A 4 MET A 15 ? VAL A 20 ? MET A 1 VAL A 6 A 5 LEU A 140 ? SER A 145 ? LEU A 126 SER A 131 A 6 THR A 174 ? LEU A 178 ? THR A 160 LEU A 164 A 7 LEU A 234 ? TYR A 235 ? LEU A 220 TYR A 221 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 62 ? O ILE A 48 N ASN A 48 ? N ASN A 34 A 2 3 N VAL A 47 ? N VAL A 33 O ASP A 115 ? O ASP A 101 A 3 4 O ILE A 114 ? O ILE A 100 N PHE A 19 ? N PHE A 5 A 4 5 N VAL A 20 ? N VAL A 6 O ILE A 144 ? O ILE A 130 A 5 6 N VAL A 141 ? N VAL A 127 O ILE A 175 ? O ILE A 161 A 6 7 N LEU A 178 ? N LEU A 164 O LEU A 234 ? O LEU A 220 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ASP 49 ? ? CG A GLU 52 ? ? 1.88 2 1 OE1 A GLU 231 ? ? O A HOH 557 ? ? 1.99 3 1 O A LEU 89 ? ? NZ A LYS 93 ? ? 2.08 4 1 OE2 A GLU 231 ? ? O A HOH 511 ? ? 2.13 5 1 O A HOH 510 ? ? O A HOH 531 ? ? 2.16 6 1 OE2 A GLU 58 ? ? O A HOH 551 ? ? 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 516 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 516 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 1.40 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 498 ? ? -175.32 9.05 2 1 GLU A 62 ? ? -50.61 -8.65 3 1 GLU A 172 ? ? 96.39 -41.21 4 1 ASP A 186 ? ? 70.05 159.51 5 1 TYR A 187 ? ? 89.93 -53.38 6 1 LYS A 193 ? ? -149.54 -24.17 7 1 PRO A 196 ? ? -88.66 46.16 8 1 CYS A 207 ? ? -56.37 81.60 9 1 MET A 209 ? ? -28.58 112.90 10 1 MET A 210 ? ? -96.39 -138.71 11 1 GLU A 212 ? ? 32.62 164.27 12 1 VAL A 213 ? ? 64.47 -47.07 13 1 CYS A 242 ? ? -93.83 -80.87 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 487 ? A MET 1 2 1 Y 1 A ARG 488 ? A ARG 2 3 1 Y 1 A GLY 489 ? A GLY 3 4 1 Y 1 A SER 490 ? A SER 4 5 1 Y 1 A HIS 491 ? A HIS 5 6 1 Y 1 A HIS 492 ? A HIS 6 7 1 Y 1 A HIS 493 ? A HIS 7 8 1 Y 1 A HIS 494 ? A HIS 8 9 1 Y 1 A HIS 495 ? A HIS 9 10 1 Y 1 A HIS 496 ? A HIS 10 11 1 Y 1 A GLY 245 ? A GLY 259 12 1 Y 1 A ASP 246 ? A ASP 260 13 1 Y 1 A LEU 247 ? A LEU 261 14 1 Y 1 A THR 248 ? A THR 262 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TYR N N N N 321 TYR CA C N S 322 TYR C C N N 323 TYR O O N N 324 TYR CB C N N 325 TYR CG C Y N 326 TYR CD1 C Y N 327 TYR CD2 C Y N 328 TYR CE1 C Y N 329 TYR CE2 C Y N 330 TYR CZ C Y N 331 TYR OH O N N 332 TYR OXT O N N 333 TYR H H N N 334 TYR H2 H N N 335 TYR HA H N N 336 TYR HB2 H N N 337 TYR HB3 H N N 338 TYR HD1 H N N 339 TYR HD2 H N N 340 TYR HE1 H N N 341 TYR HE2 H N N 342 TYR HH H N N 343 TYR HXT H N N 344 VAL N N N N 345 VAL CA C N S 346 VAL C C N N 347 VAL O O N N 348 VAL CB C N N 349 VAL CG1 C N N 350 VAL CG2 C N N 351 VAL OXT O N N 352 VAL H H N N 353 VAL H2 H N N 354 VAL HA H N N 355 VAL HB H N N 356 VAL HG11 H N N 357 VAL HG12 H N N 358 VAL HG13 H N N 359 VAL HG21 H N N 360 VAL HG22 H N N 361 VAL HG23 H N N 362 VAL HXT H N N 363 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TYR N CA sing N N 306 TYR N H sing N N 307 TYR N H2 sing N N 308 TYR CA C sing N N 309 TYR CA CB sing N N 310 TYR CA HA sing N N 311 TYR C O doub N N 312 TYR C OXT sing N N 313 TYR CB CG sing N N 314 TYR CB HB2 sing N N 315 TYR CB HB3 sing N N 316 TYR CG CD1 doub Y N 317 TYR CG CD2 sing Y N 318 TYR CD1 CE1 sing Y N 319 TYR CD1 HD1 sing N N 320 TYR CD2 CE2 doub Y N 321 TYR CD2 HD2 sing N N 322 TYR CE1 CZ doub Y N 323 TYR CE1 HE1 sing N N 324 TYR CE2 CZ sing Y N 325 TYR CE2 HE2 sing N N 326 TYR CZ OH sing N N 327 TYR OH HH sing N N 328 TYR OXT HXT sing N N 329 VAL N CA sing N N 330 VAL N H sing N N 331 VAL N H2 sing N N 332 VAL CA C sing N N 333 VAL CA CB sing N N 334 VAL CA HA sing N N 335 VAL C O doub N N 336 VAL C OXT sing N N 337 VAL CB CG1 sing N N 338 VAL CB CG2 sing N N 339 VAL CB HB sing N N 340 VAL CG1 HG11 sing N N 341 VAL CG1 HG12 sing N N 342 VAL CG1 HG13 sing N N 343 VAL CG2 HG21 sing N N 344 VAL CG2 HG22 sing N N 345 VAL CG2 HG23 sing N N 346 VAL OXT HXT sing N N 347 # _atom_sites.entry_id 1YR6 _atom_sites.fract_transf_matrix[1][1] .016586 _atom_sites.fract_transf_matrix[1][2] .009576 _atom_sites.fract_transf_matrix[1][3] .000000 _atom_sites.fract_transf_matrix[2][1] .000000 _atom_sites.fract_transf_matrix[2][2] .019152 _atom_sites.fract_transf_matrix[2][3] .000000 _atom_sites.fract_transf_matrix[3][1] .000000 _atom_sites.fract_transf_matrix[3][2] .000000 _atom_sites.fract_transf_matrix[3][3] .008539 _atom_sites.fract_transf_vector[1] .00000 _atom_sites.fract_transf_vector[2] .00000 _atom_sites.fract_transf_vector[3] .00000 # loop_ _atom_type.symbol C N O S # loop_