data_1YT0 # _entry.id 1YT0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YT0 pdb_00001yt0 10.2210/pdb1yt0/pdb RCSB RCSB031896 ? ? WWPDB D_1000031896 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-06-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-08-02 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Source and taxonomy' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.value' 16 5 'Structure model' '_struct_conn.pdbx_dist_value' 17 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 5 'Structure model' '_struct_ref_seq_dif.details' 30 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YT0 _pdbx_database_status.recvd_initial_deposition_date 2005-02-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1QY5 'Crystal Structure Of The N-Domain Of The Er Hsp90 Chaperone Grp94 In Complex With The Specific Ligand Neca' unspecified PDB 1QYH 'Crystal Structure Of The N-Domain Of Grp94 Lacking The Charged Domain In Complex With Neca' unspecified PDB 1TBW 'Ligand Induced Conformational Shift in the N-Terminal Domain of Grp94, Open Conformation' unspecified PDB 1TC0 ;Ligand Induced Conformational Shift in the N-Terminal Domain of Grp94, Open Conformation Complexed with the Physiological Partner ATP ; unspecified PDB 1TC6 'Ligand Induced Conformational Shift in the N-Terminal Domain of Grp94, Open Conformation ADP-Complex' unspecified PDB 1YSZ . unspecified PDB 1YT1 . unspecified PDB 1YT2 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dollins, D.E.' 1 'Immormino, R.M.' 2 'Gewirth, D.T.' 3 # _citation.id primary _citation.title 'Structure of Unliganded GRP94, the Endoplasmic Reticulum Hsp90: BASIS FOR NUCLEOTIDE-INDUCED CONFORMATIONAL CHANGE' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 30438 _citation.page_last 30447 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15951571 _citation.pdbx_database_id_DOI 10.1074/jbc.M503761200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dollins, D.E.' 1 ? primary 'Immormino, R.M.' 2 ? primary 'Gewirth, D.T.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Endoplasmin 26514.012 1 ? 'deletion of 287-327 replaced by 4 glycines' 'N-terminal Domain of GRP94 Residues (69-337)' 'deletion of 287-327 replaced by 4 glycines' 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 4 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 6 ? ? ? ? 5 water nat water 18.015 64 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '94 kDa glucose-regulated protein, GRP94' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMLREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNL LHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWE SDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVWDWELMN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMLREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNL LHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWE SDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVWDWELMN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "ADENOSINE-5'-DIPHOSPHATE" ADP 4 'TETRAETHYLENE GLYCOL' PG4 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 LEU n 1 6 ARG n 1 7 GLU n 1 8 LYS n 1 9 SER n 1 10 GLU n 1 11 LYS n 1 12 PHE n 1 13 ALA n 1 14 PHE n 1 15 GLN n 1 16 ALA n 1 17 GLU n 1 18 VAL n 1 19 ASN n 1 20 ARG n 1 21 MET n 1 22 MET n 1 23 LYS n 1 24 LEU n 1 25 ILE n 1 26 ILE n 1 27 ASN n 1 28 SER n 1 29 LEU n 1 30 TYR n 1 31 LYS n 1 32 ASN n 1 33 LYS n 1 34 GLU n 1 35 ILE n 1 36 PHE n 1 37 LEU n 1 38 ARG n 1 39 GLU n 1 40 LEU n 1 41 ILE n 1 42 SER n 1 43 ASN n 1 44 ALA n 1 45 SER n 1 46 ASP n 1 47 ALA n 1 48 LEU n 1 49 ASP n 1 50 LYS n 1 51 ILE n 1 52 ARG n 1 53 LEU n 1 54 ILE n 1 55 SER n 1 56 LEU n 1 57 THR n 1 58 ASP n 1 59 GLU n 1 60 ASN n 1 61 ALA n 1 62 LEU n 1 63 ALA n 1 64 GLY n 1 65 ASN n 1 66 GLU n 1 67 GLU n 1 68 LEU n 1 69 THR n 1 70 VAL n 1 71 LYS n 1 72 ILE n 1 73 LYS n 1 74 CYS n 1 75 ASP n 1 76 LYS n 1 77 GLU n 1 78 LYS n 1 79 ASN n 1 80 LEU n 1 81 LEU n 1 82 HIS n 1 83 VAL n 1 84 THR n 1 85 ASP n 1 86 THR n 1 87 GLY n 1 88 VAL n 1 89 GLY n 1 90 MET n 1 91 THR n 1 92 ARG n 1 93 GLU n 1 94 GLU n 1 95 LEU n 1 96 VAL n 1 97 LYS n 1 98 ASN n 1 99 LEU n 1 100 GLY n 1 101 THR n 1 102 ILE n 1 103 ALA n 1 104 LYS n 1 105 SER n 1 106 GLY n 1 107 THR n 1 108 SER n 1 109 GLU n 1 110 PHE n 1 111 LEU n 1 112 ASN n 1 113 LYS n 1 114 MET n 1 115 THR n 1 116 GLU n 1 117 ALA n 1 118 GLN n 1 119 GLU n 1 120 ASP n 1 121 GLY n 1 122 GLN n 1 123 SER n 1 124 THR n 1 125 SER n 1 126 GLU n 1 127 LEU n 1 128 ILE n 1 129 GLY n 1 130 GLN n 1 131 PHE n 1 132 GLY n 1 133 VAL n 1 134 GLY n 1 135 PHE n 1 136 TYR n 1 137 SER n 1 138 ALA n 1 139 PHE n 1 140 LEU n 1 141 VAL n 1 142 ALA n 1 143 ASP n 1 144 LYS n 1 145 VAL n 1 146 ILE n 1 147 VAL n 1 148 THR n 1 149 SER n 1 150 LYS n 1 151 HIS n 1 152 ASN n 1 153 ASN n 1 154 ASP n 1 155 THR n 1 156 GLN n 1 157 HIS n 1 158 ILE n 1 159 TRP n 1 160 GLU n 1 161 SER n 1 162 ASP n 1 163 SER n 1 164 ASN n 1 165 GLU n 1 166 PHE n 1 167 SER n 1 168 VAL n 1 169 ILE n 1 170 ALA n 1 171 ASP n 1 172 PRO n 1 173 ARG n 1 174 GLY n 1 175 ASN n 1 176 THR n 1 177 LEU n 1 178 GLY n 1 179 ARG n 1 180 GLY n 1 181 THR n 1 182 THR n 1 183 ILE n 1 184 THR n 1 185 LEU n 1 186 VAL n 1 187 LEU n 1 188 LYS n 1 189 GLU n 1 190 GLU n 1 191 ALA n 1 192 SER n 1 193 ASP n 1 194 TYR n 1 195 LEU n 1 196 GLU n 1 197 LEU n 1 198 ASP n 1 199 THR n 1 200 ILE n 1 201 LYS n 1 202 ASN n 1 203 LEU n 1 204 VAL n 1 205 LYS n 1 206 LYS n 1 207 TYR n 1 208 SER n 1 209 GLN n 1 210 PHE n 1 211 ILE n 1 212 ASN n 1 213 PHE n 1 214 PRO n 1 215 ILE n 1 216 TYR n 1 217 VAL n 1 218 TRP n 1 219 SER n 1 220 SER n 1 221 LYS n 1 222 THR n 1 223 GLY n 1 224 GLY n 1 225 GLY n 1 226 GLY n 1 227 LYS n 1 228 THR n 1 229 VAL n 1 230 TRP n 1 231 ASP n 1 232 TRP n 1 233 GLU n 1 234 LEU n 1 235 MET n 1 236 ASN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 5 222 dog Canis TRA1 'Canis lupus' familiaris ? ? ? ? 'Canis lupus familiaris' 9615 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? PGEX-NB-GRP94 ? ? 1 2 sample ? 227 236 dog Canis TRA1 'Canis lupus' familiaris ? ? ? ? 'Canis lupus familiaris' 9615 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? PGEX-NB-GRP94 ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 65 ? ? ? A . n A 1 2 SER 2 66 ? ? ? A . n A 1 3 HIS 3 67 ? ? ? A . n A 1 4 MET 4 68 ? ? ? A . n A 1 5 LEU 5 69 ? ? ? A . n A 1 6 ARG 6 70 ? ? ? A . n A 1 7 GLU 7 71 ? ? ? A . n A 1 8 LYS 8 72 ? ? ? A . n A 1 9 SER 9 73 ? ? ? A . n A 1 10 GLU 10 74 74 GLU GLU A . n A 1 11 LYS 11 75 75 LYS LYS A . n A 1 12 PHE 12 76 76 PHE PHE A . n A 1 13 ALA 13 77 77 ALA ALA A . n A 1 14 PHE 14 78 78 PHE PHE A . n A 1 15 GLN 15 79 79 GLN GLN A . n A 1 16 ALA 16 80 80 ALA ALA A . n A 1 17 GLU 17 81 81 GLU GLU A . n A 1 18 VAL 18 82 82 VAL VAL A . n A 1 19 ASN 19 83 83 ASN ASN A . n A 1 20 ARG 20 84 84 ARG ARG A . n A 1 21 MET 21 85 85 MET MET A . n A 1 22 MET 22 86 86 MET MET A . n A 1 23 LYS 23 87 87 LYS LYS A . n A 1 24 LEU 24 88 88 LEU LEU A . n A 1 25 ILE 25 89 89 ILE ILE A . n A 1 26 ILE 26 90 90 ILE ILE A . n A 1 27 ASN 27 91 91 ASN ASN A . n A 1 28 SER 28 92 92 SER SER A . n A 1 29 LEU 29 93 93 LEU LEU A . n A 1 30 TYR 30 94 94 TYR TYR A . n A 1 31 LYS 31 95 95 LYS LYS A . n A 1 32 ASN 32 96 96 ASN ASN A . n A 1 33 LYS 33 97 97 LYS LYS A . n A 1 34 GLU 34 98 98 GLU GLU A . n A 1 35 ILE 35 99 99 ILE ILE A . n A 1 36 PHE 36 100 100 PHE PHE A . n A 1 37 LEU 37 101 101 LEU LEU A . n A 1 38 ARG 38 102 102 ARG ARG A . n A 1 39 GLU 39 103 103 GLU GLU A . n A 1 40 LEU 40 104 104 LEU LEU A . n A 1 41 ILE 41 105 105 ILE ILE A . n A 1 42 SER 42 106 106 SER SER A . n A 1 43 ASN 43 107 107 ASN ASN A . n A 1 44 ALA 44 108 108 ALA ALA A . n A 1 45 SER 45 109 109 SER SER A . n A 1 46 ASP 46 110 110 ASP ASP A . n A 1 47 ALA 47 111 111 ALA ALA A . n A 1 48 LEU 48 112 112 LEU LEU A . n A 1 49 ASP 49 113 113 ASP ASP A . n A 1 50 LYS 50 114 114 LYS LYS A . n A 1 51 ILE 51 115 115 ILE ILE A . n A 1 52 ARG 52 116 116 ARG ARG A . n A 1 53 LEU 53 117 117 LEU LEU A . n A 1 54 ILE 54 118 118 ILE ILE A . n A 1 55 SER 55 119 119 SER SER A . n A 1 56 LEU 56 120 120 LEU LEU A . n A 1 57 THR 57 121 121 THR THR A . n A 1 58 ASP 58 122 122 ASP ASP A . n A 1 59 GLU 59 123 123 GLU GLU A . n A 1 60 ASN 60 124 124 ASN ASN A . n A 1 61 ALA 61 125 125 ALA ALA A . n A 1 62 LEU 62 126 126 LEU LEU A . n A 1 63 ALA 63 127 127 ALA ALA A . n A 1 64 GLY 64 128 128 GLY GLY A . n A 1 65 ASN 65 129 129 ASN ASN A . n A 1 66 GLU 66 130 130 GLU GLU A . n A 1 67 GLU 67 131 131 GLU GLU A . n A 1 68 LEU 68 132 132 LEU LEU A . n A 1 69 THR 69 133 133 THR THR A . n A 1 70 VAL 70 134 134 VAL VAL A . n A 1 71 LYS 71 135 135 LYS LYS A . n A 1 72 ILE 72 136 136 ILE ILE A . n A 1 73 LYS 73 137 137 LYS LYS A . n A 1 74 CYS 74 138 138 CYS CYS A . n A 1 75 ASP 75 139 139 ASP ASP A . n A 1 76 LYS 76 140 140 LYS LYS A . n A 1 77 GLU 77 141 141 GLU GLU A . n A 1 78 LYS 78 142 142 LYS LYS A . n A 1 79 ASN 79 143 143 ASN ASN A . n A 1 80 LEU 80 144 144 LEU LEU A . n A 1 81 LEU 81 145 145 LEU LEU A . n A 1 82 HIS 82 146 146 HIS HIS A . n A 1 83 VAL 83 147 147 VAL VAL A . n A 1 84 THR 84 148 148 THR THR A . n A 1 85 ASP 85 149 149 ASP ASP A . n A 1 86 THR 86 150 150 THR THR A . n A 1 87 GLY 87 151 151 GLY GLY A . n A 1 88 VAL 88 152 152 VAL VAL A . n A 1 89 GLY 89 153 153 GLY GLY A . n A 1 90 MET 90 154 154 MET MET A . n A 1 91 THR 91 155 155 THR THR A . n A 1 92 ARG 92 156 156 ARG ARG A . n A 1 93 GLU 93 157 157 GLU GLU A . n A 1 94 GLU 94 158 158 GLU GLU A . n A 1 95 LEU 95 159 159 LEU LEU A . n A 1 96 VAL 96 160 160 VAL VAL A . n A 1 97 LYS 97 161 161 LYS LYS A . n A 1 98 ASN 98 162 162 ASN ASN A . n A 1 99 LEU 99 163 163 LEU LEU A . n A 1 100 GLY 100 164 164 GLY GLY A . n A 1 101 THR 101 165 165 THR THR A . n A 1 102 ILE 102 166 166 ILE ILE A . n A 1 103 ALA 103 167 ? ? ? A . n A 1 104 LYS 104 168 ? ? ? A . n A 1 105 SER 105 169 ? ? ? A . n A 1 106 GLY 106 170 ? ? ? A . n A 1 107 THR 107 171 ? ? ? A . n A 1 108 SER 108 172 ? ? ? A . n A 1 109 GLU 109 173 ? ? ? A . n A 1 110 PHE 110 174 ? ? ? A . n A 1 111 LEU 111 175 ? ? ? A . n A 1 112 ASN 112 176 ? ? ? A . n A 1 113 LYS 113 177 ? ? ? A . n A 1 114 MET 114 178 ? ? ? A . n A 1 115 THR 115 179 ? ? ? A . n A 1 116 GLU 116 180 ? ? ? A . n A 1 117 ALA 117 181 ? ? ? A . n A 1 118 GLN 118 182 ? ? ? A . n A 1 119 GLU 119 183 ? ? ? A . n A 1 120 ASP 120 184 ? ? ? A . n A 1 121 GLY 121 185 ? ? ? A . n A 1 122 GLN 122 186 ? ? ? A . n A 1 123 SER 123 187 ? ? ? A . n A 1 124 THR 124 188 ? ? ? A . n A 1 125 SER 125 189 ? ? ? A . n A 1 126 GLU 126 190 ? ? ? A . n A 1 127 LEU 127 191 ? ? ? A . n A 1 128 ILE 128 192 ? ? ? A . n A 1 129 GLY 129 193 ? ? ? A . n A 1 130 GLN 130 194 ? ? ? A . n A 1 131 PHE 131 195 ? ? ? A . n A 1 132 GLY 132 196 196 GLY GLY A . n A 1 133 VAL 133 197 197 VAL VAL A . n A 1 134 GLY 134 198 198 GLY GLY A . n A 1 135 PHE 135 199 199 PHE PHE A . n A 1 136 TYR 136 200 200 TYR TYR A . n A 1 137 SER 137 201 201 SER SER A . n A 1 138 ALA 138 202 202 ALA ALA A . n A 1 139 PHE 139 203 203 PHE PHE A . n A 1 140 LEU 140 204 204 LEU LEU A . n A 1 141 VAL 141 205 205 VAL VAL A . n A 1 142 ALA 142 206 206 ALA ALA A . n A 1 143 ASP 143 207 207 ASP ASP A . n A 1 144 LYS 144 208 208 LYS LYS A . n A 1 145 VAL 145 209 209 VAL VAL A . n A 1 146 ILE 146 210 210 ILE ILE A . n A 1 147 VAL 147 211 211 VAL VAL A . n A 1 148 THR 148 212 212 THR THR A . n A 1 149 SER 149 213 213 SER SER A . n A 1 150 LYS 150 214 214 LYS LYS A . n A 1 151 HIS 151 215 215 HIS HIS A . n A 1 152 ASN 152 216 216 ASN ASN A . n A 1 153 ASN 153 217 217 ASN ASN A . n A 1 154 ASP 154 218 218 ASP ASP A . n A 1 155 THR 155 219 219 THR THR A . n A 1 156 GLN 156 220 220 GLN GLN A . n A 1 157 HIS 157 221 221 HIS HIS A . n A 1 158 ILE 158 222 222 ILE ILE A . n A 1 159 TRP 159 223 223 TRP TRP A . n A 1 160 GLU 160 224 224 GLU GLU A . n A 1 161 SER 161 225 225 SER SER A . n A 1 162 ASP 162 226 226 ASP ASP A . n A 1 163 SER 163 227 227 SER SER A . n A 1 164 ASN 164 228 228 ASN ASN A . n A 1 165 GLU 165 229 229 GLU GLU A . n A 1 166 PHE 166 230 230 PHE PHE A . n A 1 167 SER 167 231 231 SER SER A . n A 1 168 VAL 168 232 232 VAL VAL A . n A 1 169 ILE 169 233 233 ILE ILE A . n A 1 170 ALA 170 234 234 ALA ALA A . n A 1 171 ASP 171 235 235 ASP ASP A . n A 1 172 PRO 172 236 236 PRO PRO A . n A 1 173 ARG 173 237 237 ARG ARG A . n A 1 174 GLY 174 238 238 GLY GLY A . n A 1 175 ASN 175 239 239 ASN ASN A . n A 1 176 THR 176 240 240 THR THR A . n A 1 177 LEU 177 241 241 LEU LEU A . n A 1 178 GLY 178 242 242 GLY GLY A . n A 1 179 ARG 179 243 243 ARG ARG A . n A 1 180 GLY 180 244 244 GLY GLY A . n A 1 181 THR 181 245 245 THR THR A . n A 1 182 THR 182 246 246 THR THR A . n A 1 183 ILE 183 247 247 ILE ILE A . n A 1 184 THR 184 248 248 THR THR A . n A 1 185 LEU 185 249 249 LEU LEU A . n A 1 186 VAL 186 250 250 VAL VAL A . n A 1 187 LEU 187 251 251 LEU LEU A . n A 1 188 LYS 188 252 252 LYS LYS A . n A 1 189 GLU 189 253 253 GLU GLU A . n A 1 190 GLU 190 254 254 GLU GLU A . n A 1 191 ALA 191 255 255 ALA ALA A . n A 1 192 SER 192 256 256 SER SER A . n A 1 193 ASP 193 257 257 ASP ASP A . n A 1 194 TYR 194 258 258 TYR TYR A . n A 1 195 LEU 195 259 259 LEU LEU A . n A 1 196 GLU 196 260 260 GLU GLU A . n A 1 197 LEU 197 261 261 LEU LEU A . n A 1 198 ASP 198 262 262 ASP ASP A . n A 1 199 THR 199 263 263 THR THR A . n A 1 200 ILE 200 264 264 ILE ILE A . n A 1 201 LYS 201 265 265 LYS LYS A . n A 1 202 ASN 202 266 266 ASN ASN A . n A 1 203 LEU 203 267 267 LEU LEU A . n A 1 204 VAL 204 268 268 VAL VAL A . n A 1 205 LYS 205 269 269 LYS LYS A . n A 1 206 LYS 206 270 270 LYS LYS A . n A 1 207 TYR 207 271 271 TYR TYR A . n A 1 208 SER 208 272 272 SER SER A . n A 1 209 GLN 209 273 273 GLN GLN A . n A 1 210 PHE 210 274 274 PHE PHE A . n A 1 211 ILE 211 275 275 ILE ILE A . n A 1 212 ASN 212 276 276 ASN ASN A . n A 1 213 PHE 213 277 277 PHE PHE A . n A 1 214 PRO 214 278 278 PRO PRO A . n A 1 215 ILE 215 279 279 ILE ILE A . n A 1 216 TYR 216 280 280 TYR TYR A . n A 1 217 VAL 217 281 281 VAL VAL A . n A 1 218 TRP 218 282 282 TRP TRP A . n A 1 219 SER 219 283 283 SER SER A . n A 1 220 SER 220 284 284 SER SER A . n A 1 221 LYS 221 285 285 LYS LYS A . n A 1 222 THR 222 286 286 THR THR A . n A 1 223 GLY 223 324 ? ? ? A . n A 1 224 GLY 224 325 ? ? ? A . n A 1 225 GLY 225 326 ? ? ? A . n A 1 226 GLY 226 327 ? ? ? A . n A 1 227 LYS 227 328 328 LYS LYS A . n A 1 228 THR 228 329 329 THR THR A . n A 1 229 VAL 229 330 330 VAL VAL A . n A 1 230 TRP 230 331 331 TRP TRP A . n A 1 231 ASP 231 332 332 ASP ASP A . n A 1 232 TRP 232 333 333 TRP TRP A . n A 1 233 GLU 233 334 334 GLU GLU A . n A 1 234 LEU 234 335 335 LEU LEU A . n A 1 235 MET 235 336 336 MET MET A . n A 1 236 ASN 236 337 337 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 338 1 MG MG A . C 3 ADP 1 339 1 ADP ADP A . D 4 PG4 1 301 1 PG4 PG4 A . E 4 PG4 1 302 2 PG4 PG4 A . F 4 PG4 1 306 6 PG4 PG4 A . G 4 PG4 1 307 7 PG4 PG4 A . H 4 PG4 1 308 8 PG4 PG4 A . I 4 PG4 1 309 9 PG4 PG4 A . J 5 HOH 1 1 1 HOH HOH A . J 5 HOH 2 2 2 HOH HOH A . J 5 HOH 3 3 3 HOH HOH A . J 5 HOH 4 4 4 HOH HOH A . J 5 HOH 5 5 5 HOH HOH A . J 5 HOH 6 6 6 HOH HOH A . J 5 HOH 7 7 7 HOH HOH A . J 5 HOH 8 8 8 HOH HOH A . J 5 HOH 9 9 9 HOH HOH A . J 5 HOH 10 10 10 HOH HOH A . J 5 HOH 11 11 11 HOH HOH A . J 5 HOH 12 12 12 HOH HOH A . J 5 HOH 13 13 13 HOH HOH A . J 5 HOH 14 14 14 HOH HOH A . J 5 HOH 15 15 15 HOH HOH A . J 5 HOH 16 16 16 HOH HOH A . J 5 HOH 17 17 17 HOH HOH A . J 5 HOH 18 18 18 HOH HOH A . J 5 HOH 19 19 19 HOH HOH A . J 5 HOH 20 20 20 HOH HOH A . J 5 HOH 21 21 21 HOH HOH A . J 5 HOH 22 22 22 HOH HOH A . J 5 HOH 23 23 23 HOH HOH A . J 5 HOH 24 24 24 HOH HOH A . J 5 HOH 25 25 25 HOH HOH A . J 5 HOH 26 26 26 HOH HOH A . J 5 HOH 27 27 27 HOH HOH A . J 5 HOH 28 28 28 HOH HOH A . J 5 HOH 29 29 29 HOH HOH A . J 5 HOH 30 30 30 HOH HOH A . J 5 HOH 31 31 31 HOH HOH A . J 5 HOH 32 32 32 HOH HOH A . J 5 HOH 33 33 33 HOH HOH A . J 5 HOH 34 34 34 HOH HOH A . J 5 HOH 35 35 35 HOH HOH A . J 5 HOH 36 36 36 HOH HOH A . J 5 HOH 37 37 37 HOH HOH A . J 5 HOH 38 38 38 HOH HOH A . J 5 HOH 39 39 39 HOH HOH A . J 5 HOH 40 40 40 HOH HOH A . J 5 HOH 41 41 41 HOH HOH A . J 5 HOH 42 42 42 HOH HOH A . J 5 HOH 43 43 43 HOH HOH A . J 5 HOH 44 44 44 HOH HOH A . J 5 HOH 45 45 45 HOH HOH A . J 5 HOH 46 46 46 HOH HOH A . J 5 HOH 47 47 47 HOH HOH A . J 5 HOH 48 48 48 HOH HOH A . J 5 HOH 49 49 49 HOH HOH A . J 5 HOH 50 50 50 HOH HOH A . J 5 HOH 51 51 51 HOH HOH A . J 5 HOH 52 52 52 HOH HOH A . J 5 HOH 53 53 53 HOH HOH A . J 5 HOH 54 54 54 HOH HOH A . J 5 HOH 55 55 55 HOH HOH A . J 5 HOH 56 56 56 HOH HOH A . J 5 HOH 57 57 57 HOH HOH A . J 5 HOH 58 58 58 HOH HOH A . J 5 HOH 59 59 59 HOH HOH A . J 5 HOH 60 60 60 HOH HOH A . J 5 HOH 61 61 61 HOH HOH A . J 5 HOH 62 62 62 HOH HOH A . J 5 HOH 63 63 63 HOH HOH A . J 5 HOH 64 64 64 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 94 ? CG ? A TYR 30 CG 2 1 Y 1 A TYR 94 ? CD1 ? A TYR 30 CD1 3 1 Y 1 A TYR 94 ? CD2 ? A TYR 30 CD2 4 1 Y 1 A TYR 94 ? CE1 ? A TYR 30 CE1 5 1 Y 1 A TYR 94 ? CE2 ? A TYR 30 CE2 6 1 Y 1 A TYR 94 ? CZ ? A TYR 30 CZ 7 1 Y 1 A TYR 94 ? OH ? A TYR 30 OH 8 1 Y 1 A LYS 95 ? CG ? A LYS 31 CG 9 1 Y 1 A LYS 95 ? CD ? A LYS 31 CD 10 1 Y 1 A LYS 95 ? CE ? A LYS 31 CE 11 1 Y 1 A LYS 95 ? NZ ? A LYS 31 NZ 12 1 Y 1 A GLU 123 ? CG ? A GLU 59 CG 13 1 Y 1 A GLU 123 ? CD ? A GLU 59 CD 14 1 Y 1 A GLU 123 ? OE1 ? A GLU 59 OE1 15 1 Y 1 A GLU 123 ? OE2 ? A GLU 59 OE2 16 1 Y 1 A GLU 130 ? CG ? A GLU 66 CG 17 1 Y 1 A GLU 130 ? CD ? A GLU 66 CD 18 1 Y 1 A GLU 130 ? OE1 ? A GLU 66 OE1 19 1 Y 1 A GLU 130 ? OE2 ? A GLU 66 OE2 20 1 Y 1 A LYS 161 ? CG ? A LYS 97 CG 21 1 Y 1 A LYS 161 ? CD ? A LYS 97 CD 22 1 Y 1 A LYS 161 ? CE ? A LYS 97 CE 23 1 Y 1 A LYS 161 ? NZ ? A LYS 97 NZ 24 1 Y 1 A GLU 253 ? CG ? A GLU 189 CG 25 1 Y 1 A GLU 253 ? CD ? A GLU 189 CD 26 1 Y 1 A GLU 253 ? OE1 ? A GLU 189 OE1 27 1 Y 1 A GLU 253 ? OE2 ? A GLU 189 OE2 28 1 Y 1 A ASP 262 ? CG ? A ASP 198 CG 29 1 Y 1 A ASP 262 ? OD1 ? A ASP 198 OD1 30 1 Y 1 A ASP 262 ? OD2 ? A ASP 198 OD2 31 1 Y 1 A LYS 328 ? CG ? A LYS 227 CG 32 1 Y 1 A LYS 328 ? CD ? A LYS 227 CD 33 1 Y 1 A LYS 328 ? CE ? A LYS 227 CE 34 1 Y 1 A LYS 328 ? NZ ? A LYS 227 NZ 35 1 N 1 A PG4 301 ? C7 ? D PG4 1 C7 36 1 N 1 A PG4 301 ? C8 ? D PG4 1 C8 37 1 N 1 A PG4 301 ? O5 ? D PG4 1 O5 38 1 N 1 A PG4 306 ? C5 ? F PG4 1 C5 39 1 N 1 A PG4 306 ? C6 ? F PG4 1 C6 40 1 N 1 A PG4 306 ? O4 ? F PG4 1 O4 41 1 N 1 A PG4 306 ? C7 ? F PG4 1 C7 42 1 N 1 A PG4 306 ? C8 ? F PG4 1 C8 43 1 N 1 A PG4 306 ? O5 ? F PG4 1 O5 44 1 N 1 A PG4 307 ? C5 ? G PG4 1 C5 45 1 N 1 A PG4 307 ? C6 ? G PG4 1 C6 46 1 N 1 A PG4 307 ? O4 ? G PG4 1 O4 47 1 N 1 A PG4 307 ? C7 ? G PG4 1 C7 48 1 N 1 A PG4 307 ? C8 ? G PG4 1 C8 49 1 N 1 A PG4 307 ? O5 ? G PG4 1 O5 50 1 N 1 A PG4 308 ? C7 ? H PG4 1 C7 51 1 N 1 A PG4 308 ? C8 ? H PG4 1 C8 52 1 N 1 A PG4 308 ? O5 ? H PG4 1 O5 53 1 N 1 A PG4 309 ? C5 ? I PG4 1 C5 54 1 N 1 A PG4 309 ? C6 ? I PG4 1 C6 55 1 N 1 A PG4 309 ? O4 ? I PG4 1 O4 56 1 N 1 A PG4 309 ? C7 ? I PG4 1 C7 57 1 N 1 A PG4 309 ? C8 ? I PG4 1 C8 58 1 N 1 A PG4 309 ? O5 ? I PG4 1 O5 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 1YT0 _cell.length_a 65.910 _cell.length_b 94.860 _cell.length_c 42.910 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YT0 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YT0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pdbx_details 'PEG400, MgCl, Tris, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2004-12-15 _diffrn_detector.details 'Rosenbaum-Rock monochromator #2 double crystal, Rosenbaum-Rock vertical focusing mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock monochromator #1 high-resolution double-crystal sagittal focusing' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0083 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0083 # _reflns.entry_id 1YT0 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.4 _reflns.number_obs 10364 _reflns.number_all ? _reflns.percent_possible_obs 93.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.068 _reflns.pdbx_netI_over_sigmaI 15.8 _reflns.B_iso_Wilson_estimate 37.6 _reflns.pdbx_redundancy 3.740 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 97.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.295 _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.pdbx_redundancy 2.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2189 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1YT0 _refine.ls_number_reflns_obs 10364 _refine.ls_number_reflns_all 11037 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1295087.36 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 13.07 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 94.5 _refine.ls_R_factor_obs 0.228 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.228 _refine.ls_R_factor_R_free 0.264 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.2 _refine.ls_number_reflns_R_free 1055 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 61.8 _refine.aniso_B[1][1] -17.97 _refine.aniso_B[2][2] 15.01 _refine.aniso_B[3][3] 2.96 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.451035 _refine.solvent_model_param_bsol 84.7767 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YT0 _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs 0.41 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.38 _refine_analyze.Luzzati_sigma_a_free 0.45 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1542 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 82 _refine_hist.number_atoms_solvent 64 _refine_hist.number_atoms_total 1688 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 13.07 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.2 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.70 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.49 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.50 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.94 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.89 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.55 _refine_ls_shell.number_reflns_R_work 1573 _refine_ls_shell.R_factor_R_work 0.331 _refine_ls_shell.percent_reflns_obs 97.5 _refine_ls_shell.R_factor_R_free 0.351 _refine_ls_shell.R_factor_R_free_error 0.027 _refine_ls_shell.percent_reflns_R_free 9.8 _refine_ls_shell.number_reflns_R_free 171 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 4 NEW_PEG400.PARAM PEG400.TOP 'X-RAY DIFFRACTION' 5 ADP_FIXED.PARAM ADP_FIXED.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1YT0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YT0 _struct.title ;Crystal Structure of the Unliganded Form of GRP94, the ER Hsp90: Basis for Nucleotide-Induced Conformational Change, GRP94N(DELTA)41 APO CRYSTAL SOAKED WITH ADP ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YT0 _struct_keywords.pdbx_keywords CHAPERONE _struct_keywords.text 'GRP94, gp96, Hsp90, Bergerat, Chaperone, Endoplasmic reticulum, ADP, ATP, HtpG' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ENPL_CANFA P41148 1 ;LREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVT DTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSN EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKT ; 69 ? 2 UNP ENPL_CANFA P41148 1 KTVWDWELMN 328 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YT0 A 5 ? 222 ? P41148 69 ? 286 ? 69 286 2 2 1YT0 A 227 ? 236 ? P41148 328 ? 337 ? 328 337 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YT0 GLY A 1 ? UNP P41148 ? ? 'cloning artifact' 65 1 1 1YT0 SER A 2 ? UNP P41148 ? ? 'cloning artifact' 66 2 1 1YT0 HIS A 3 ? UNP P41148 ? ? 'cloning artifact' 67 3 1 1YT0 MET A 4 ? UNP P41148 ? ? 'cloning artifact' 68 4 1 1YT0 GLY A 223 ? UNP P41148 ? ? 'SEE REMARK 999' 324 5 1 1YT0 GLY A 224 ? UNP P41148 ? ? 'SEE REMARK 999' 325 6 1 1YT0 GLY A 225 ? UNP P41148 ? ? 'SEE REMARK 999' 326 7 1 1YT0 GLY A 226 ? UNP P41148 ? ? 'SEE REMARK 999' 327 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 15 ? LEU A 29 ? GLN A 79 LEU A 93 1 ? 15 HELX_P HELX_P2 2 GLU A 34 ? ASP A 58 ? GLU A 98 ASP A 122 1 ? 25 HELX_P HELX_P3 3 THR A 91 ? LEU A 99 ? THR A 155 LEU A 163 1 ? 9 HELX_P HELX_P4 4 GLY A 134 ? LEU A 140 ? GLY A 198 LEU A 204 5 ? 7 HELX_P HELX_P5 5 GLU A 189 ? LEU A 195 ? GLU A 253 LEU A 259 5 ? 7 HELX_P HELX_P6 6 GLU A 196 ? SER A 208 ? GLU A 260 SER A 272 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? J HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 4 A MG 338 1_555 ? ? ? ? ? ? ? 2.394 ? ? metalc2 metalc ? ? J HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 5 A MG 338 1_555 ? ? ? ? ? ? ? 2.587 ? ? metalc3 metalc ? ? A ASN 43 OD1 ? ? ? 1_555 B MG . MG ? ? A ASN 107 A MG 338 1_555 ? ? ? ? ? ? ? 2.599 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 C ADP . O1B ? ? A MG 338 A ADP 339 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 C ADP . O2A ? ? A MG 338 A ADP 339 1_555 ? ? ? ? ? ? ? 2.568 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? J HOH . ? A HOH 4 ? 1_555 MG ? B MG . ? A MG 338 ? 1_555 O ? J HOH . ? A HOH 5 ? 1_555 100.2 ? 2 O ? J HOH . ? A HOH 4 ? 1_555 MG ? B MG . ? A MG 338 ? 1_555 OD1 ? A ASN 43 ? A ASN 107 ? 1_555 74.7 ? 3 O ? J HOH . ? A HOH 5 ? 1_555 MG ? B MG . ? A MG 338 ? 1_555 OD1 ? A ASN 43 ? A ASN 107 ? 1_555 67.5 ? 4 O ? J HOH . ? A HOH 4 ? 1_555 MG ? B MG . ? A MG 338 ? 1_555 O1B ? C ADP . ? A ADP 339 ? 1_555 141.6 ? 5 O ? J HOH . ? A HOH 5 ? 1_555 MG ? B MG . ? A MG 338 ? 1_555 O1B ? C ADP . ? A ADP 339 ? 1_555 94.5 ? 6 OD1 ? A ASN 43 ? A ASN 107 ? 1_555 MG ? B MG . ? A MG 338 ? 1_555 O1B ? C ADP . ? A ADP 339 ? 1_555 78.7 ? 7 O ? J HOH . ? A HOH 4 ? 1_555 MG ? B MG . ? A MG 338 ? 1_555 O2A ? C ADP . ? A ADP 339 ? 1_555 74.9 ? 8 O ? J HOH . ? A HOH 5 ? 1_555 MG ? B MG . ? A MG 338 ? 1_555 O2A ? C ADP . ? A ADP 339 ? 1_555 130.1 ? 9 OD1 ? A ASN 43 ? A ASN 107 ? 1_555 MG ? B MG . ? A MG 338 ? 1_555 O2A ? C ADP . ? A ADP 339 ? 1_555 63.3 ? 10 O1B ? C ADP . ? A ADP 339 ? 1_555 MG ? B MG . ? A MG 338 ? 1_555 O2A ? C ADP . ? A ADP 339 ? 1_555 68.6 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? parallel A 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 11 ? PHE A 12 ? LYS A 75 PHE A 76 A 2 PHE A 166 ? ALA A 170 ? PHE A 230 ALA A 234 A 3 HIS A 157 ? SER A 161 ? HIS A 221 SER A 225 A 4 ALA A 142 ? LYS A 150 ? ALA A 206 LYS A 214 A 5 GLY A 180 ? LEU A 187 ? GLY A 244 LEU A 251 A 6 LEU A 80 ? ASP A 85 ? LEU A 144 ASP A 149 A 7 VAL A 70 ? ASP A 75 ? VAL A 134 ASP A 139 A 8 ILE A 215 ? SER A 220 ? ILE A 279 SER A 284 A 9 TRP A 230 ? LEU A 234 ? TRP A 331 LEU A 335 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 12 ? N PHE A 76 O PHE A 166 ? O PHE A 230 A 2 3 O ILE A 169 ? O ILE A 233 N ILE A 158 ? N ILE A 222 A 3 4 O TRP A 159 ? O TRP A 223 N VAL A 147 ? N VAL A 211 A 4 5 N ILE A 146 ? N ILE A 210 O THR A 184 ? O THR A 248 A 5 6 O THR A 181 ? O THR A 245 N ASP A 85 ? N ASP A 149 A 6 7 O THR A 84 ? O THR A 148 N LYS A 71 ? N LYS A 135 A 7 8 N ILE A 72 ? N ILE A 136 O TYR A 216 ? O TYR A 280 A 8 9 N SER A 219 ? N SER A 283 O ASP A 231 ? O ASP A 332 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 338 ? 4 'BINDING SITE FOR RESIDUE MG A 338' AC2 Software A ADP 339 ? 17 'BINDING SITE FOR RESIDUE ADP A 339' AC3 Software A PG4 301 ? 6 'BINDING SITE FOR RESIDUE PG4 A 301' AC4 Software A PG4 302 ? 7 'BINDING SITE FOR RESIDUE PG4 A 302' AC5 Software A PG4 306 ? 5 'BINDING SITE FOR RESIDUE PG4 A 306' AC6 Software A PG4 307 ? 7 'BINDING SITE FOR RESIDUE PG4 A 307' AC7 Software A PG4 308 ? 1 'BINDING SITE FOR RESIDUE PG4 A 308' AC8 Software A PG4 309 ? 2 'BINDING SITE FOR RESIDUE PG4 A 309' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH J . ? HOH A 4 . ? 1_555 ? 2 AC1 4 HOH J . ? HOH A 5 . ? 1_555 ? 3 AC1 4 ASN A 43 ? ASN A 107 . ? 1_555 ? 4 AC1 4 ADP C . ? ADP A 339 . ? 1_555 ? 5 AC2 17 HOH J . ? HOH A 1 . ? 1_555 ? 6 AC2 17 HOH J . ? HOH A 2 . ? 1_555 ? 7 AC2 17 HOH J . ? HOH A 4 . ? 1_555 ? 8 AC2 17 HOH J . ? HOH A 9 . ? 1_555 ? 9 AC2 17 HOH J . ? HOH A 11 . ? 1_555 ? 10 AC2 17 HOH J . ? HOH A 43 . ? 1_555 ? 11 AC2 17 HOH J . ? HOH A 50 . ? 1_555 ? 12 AC2 17 ASN A 43 ? ASN A 107 . ? 1_555 ? 13 AC2 17 ALA A 47 ? ALA A 111 . ? 1_555 ? 14 AC2 17 ASP A 85 ? ASP A 149 . ? 1_555 ? 15 AC2 17 MET A 90 ? MET A 154 . ? 1_555 ? 16 AC2 17 ASN A 98 ? ASN A 162 . ? 1_555 ? 17 AC2 17 LEU A 99 ? LEU A 163 . ? 1_555 ? 18 AC2 17 GLY A 134 ? GLY A 198 . ? 1_555 ? 19 AC2 17 PHE A 135 ? PHE A 199 . ? 1_555 ? 20 AC2 17 THR A 181 ? THR A 245 . ? 1_555 ? 21 AC2 17 MG B . ? MG A 338 . ? 1_555 ? 22 AC3 6 LEU A 53 ? LEU A 117 . ? 4_456 ? 23 AC3 6 LEU A 56 ? LEU A 120 . ? 4_456 ? 24 AC3 6 THR A 148 ? THR A 212 . ? 1_555 ? 25 AC3 6 ARG A 173 ? ARG A 237 . ? 1_555 ? 26 AC3 6 THR A 182 ? THR A 246 . ? 1_555 ? 27 AC3 6 PG4 E . ? PG4 A 302 . ? 1_555 ? 28 AC4 7 LYS A 73 ? LYS A 137 . ? 1_555 ? 29 AC4 7 HIS A 82 ? HIS A 146 . ? 1_555 ? 30 AC4 7 THR A 84 ? THR A 148 . ? 1_555 ? 31 AC4 7 THR A 182 ? THR A 246 . ? 1_555 ? 32 AC4 7 TRP A 218 ? TRP A 282 . ? 1_555 ? 33 AC4 7 PG4 D . ? PG4 A 301 . ? 1_555 ? 34 AC4 7 PG4 G . ? PG4 A 307 . ? 1_555 ? 35 AC5 5 HOH J . ? HOH A 28 . ? 1_555 ? 36 AC5 5 ASN A 19 ? ASN A 83 . ? 1_555 ? 37 AC5 5 MET A 22 ? MET A 86 . ? 1_555 ? 38 AC5 5 LYS A 23 ? LYS A 87 . ? 2_565 ? 39 AC5 5 SER A 163 ? SER A 227 . ? 1_555 ? 40 AC6 7 ASN A 65 ? ASN A 129 . ? 1_555 ? 41 AC6 7 LYS A 71 ? LYS A 135 . ? 1_555 ? 42 AC6 7 LYS A 73 ? LYS A 137 . ? 1_555 ? 43 AC6 7 THR A 84 ? THR A 148 . ? 1_555 ? 44 AC6 7 THR A 86 ? THR A 150 . ? 1_555 ? 45 AC6 7 LEU A 177 ? LEU A 241 . ? 1_555 ? 46 AC6 7 PG4 E . ? PG4 A 302 . ? 1_555 ? 47 AC7 1 SER A 28 ? SER A 92 . ? 1_555 ? 48 AC8 2 THR A 176 ? THR A 240 . ? 1_555 ? 49 AC8 2 GLY A 178 ? GLY A 242 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O3 A PG4 306 ? ? 1_555 O3 A PG4 306 ? ? 2_565 0.37 2 1 C4 A PG4 306 ? ? 1_555 O3 A PG4 306 ? ? 2_565 1.79 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 93 ? ? -140.54 13.39 2 1 ASN A 96 ? ? -101.96 67.61 3 1 GLU A 98 ? ? -58.06 -4.02 4 1 ALA A 125 ? ? -34.24 -34.96 5 1 ASN A 216 ? ? -36.30 -34.49 6 1 ASN A 217 ? ? -97.17 35.80 7 1 ASP A 218 ? ? 178.09 172.01 8 1 SER A 227 ? ? 91.24 -14.34 9 1 GLU A 229 ? ? 171.19 174.92 10 1 ASN A 276 ? ? -80.26 44.55 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 600 ;HETEROGEN ONLY FRAGMENTS OF PEG400 (PG4) WERE IDENTIFIED AND IN MANY CASES SEVERAL ATOMS WERE MISSING DUE TO LACK OF ELECTRON DENSITY. ; 42 ;MolProbity Structure Validation PROGRAMS : MolProbity (KiNG, REDUCE, and PROBE) AUTHORS : I.W.Davis,J.M.Word URL : http://kinemage.biochem.duke.edu/molprobity/ AUTHORS : J.S.Richardson,W.B.Arendall,D.C.Richardson REFERENCE : New tools and data for improving : structures, using all-atom contacts : Methods in Enzymology. 2003;374:385-412. MolProbity output scores: All-atom clashscore : 20.54 (0.00 B<40) Bad rotamers : 0.6% 1/167 (target 0-1%) Ramachandran outliers : 0.0% 0/188 (target 0.2%) Ramachandran favored : 94.7% 178/188 (target 98.0%) ; 999 ;SEQUENCE SEQUENCE DATABASE RESIDUES 287-327 WERE DELETED AND REPLACED BY 4 GLYCINES. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 65 ? A GLY 1 2 1 Y 1 A SER 66 ? A SER 2 3 1 Y 1 A HIS 67 ? A HIS 3 4 1 Y 1 A MET 68 ? A MET 4 5 1 Y 1 A LEU 69 ? A LEU 5 6 1 Y 1 A ARG 70 ? A ARG 6 7 1 Y 1 A GLU 71 ? A GLU 7 8 1 Y 1 A LYS 72 ? A LYS 8 9 1 Y 1 A SER 73 ? A SER 9 10 1 Y 1 A ALA 167 ? A ALA 103 11 1 Y 1 A LYS 168 ? A LYS 104 12 1 Y 1 A SER 169 ? A SER 105 13 1 Y 1 A GLY 170 ? A GLY 106 14 1 Y 1 A THR 171 ? A THR 107 15 1 Y 1 A SER 172 ? A SER 108 16 1 Y 1 A GLU 173 ? A GLU 109 17 1 Y 1 A PHE 174 ? A PHE 110 18 1 Y 1 A LEU 175 ? A LEU 111 19 1 Y 1 A ASN 176 ? A ASN 112 20 1 Y 1 A LYS 177 ? A LYS 113 21 1 Y 1 A MET 178 ? A MET 114 22 1 Y 1 A THR 179 ? A THR 115 23 1 Y 1 A GLU 180 ? A GLU 116 24 1 Y 1 A ALA 181 ? A ALA 117 25 1 Y 1 A GLN 182 ? A GLN 118 26 1 Y 1 A GLU 183 ? A GLU 119 27 1 Y 1 A ASP 184 ? A ASP 120 28 1 Y 1 A GLY 185 ? A GLY 121 29 1 Y 1 A GLN 186 ? A GLN 122 30 1 Y 1 A SER 187 ? A SER 123 31 1 Y 1 A THR 188 ? A THR 124 32 1 Y 1 A SER 189 ? A SER 125 33 1 Y 1 A GLU 190 ? A GLU 126 34 1 Y 1 A LEU 191 ? A LEU 127 35 1 Y 1 A ILE 192 ? A ILE 128 36 1 Y 1 A GLY 193 ? A GLY 129 37 1 Y 1 A GLN 194 ? A GLN 130 38 1 Y 1 A PHE 195 ? A PHE 131 39 1 Y 1 A GLY 324 ? A GLY 223 40 1 Y 1 A GLY 325 ? A GLY 224 41 1 Y 1 A GLY 326 ? A GLY 225 42 1 Y 1 A GLY 327 ? A GLY 226 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 CYS N N N N 116 CYS CA C N R 117 CYS C C N N 118 CYS O O N N 119 CYS CB C N N 120 CYS SG S N N 121 CYS OXT O N N 122 CYS H H N N 123 CYS H2 H N N 124 CYS HA H N N 125 CYS HB2 H N N 126 CYS HB3 H N N 127 CYS HG H N N 128 CYS HXT H N N 129 GLN N N N N 130 GLN CA C N S 131 GLN C C N N 132 GLN O O N N 133 GLN CB C N N 134 GLN CG C N N 135 GLN CD C N N 136 GLN OE1 O N N 137 GLN NE2 N N N 138 GLN OXT O N N 139 GLN H H N N 140 GLN H2 H N N 141 GLN HA H N N 142 GLN HB2 H N N 143 GLN HB3 H N N 144 GLN HG2 H N N 145 GLN HG3 H N N 146 GLN HE21 H N N 147 GLN HE22 H N N 148 GLN HXT H N N 149 GLU N N N N 150 GLU CA C N S 151 GLU C C N N 152 GLU O O N N 153 GLU CB C N N 154 GLU CG C N N 155 GLU CD C N N 156 GLU OE1 O N N 157 GLU OE2 O N N 158 GLU OXT O N N 159 GLU H H N N 160 GLU H2 H N N 161 GLU HA H N N 162 GLU HB2 H N N 163 GLU HB3 H N N 164 GLU HG2 H N N 165 GLU HG3 H N N 166 GLU HE2 H N N 167 GLU HXT H N N 168 GLY N N N N 169 GLY CA C N N 170 GLY C C N N 171 GLY O O N N 172 GLY OXT O N N 173 GLY H H N N 174 GLY H2 H N N 175 GLY HA2 H N N 176 GLY HA3 H N N 177 GLY HXT H N N 178 HIS N N N N 179 HIS CA C N S 180 HIS C C N N 181 HIS O O N N 182 HIS CB C N N 183 HIS CG C Y N 184 HIS ND1 N Y N 185 HIS CD2 C Y N 186 HIS CE1 C Y N 187 HIS NE2 N Y N 188 HIS OXT O N N 189 HIS H H N N 190 HIS H2 H N N 191 HIS HA H N N 192 HIS HB2 H N N 193 HIS HB3 H N N 194 HIS HD1 H N N 195 HIS HD2 H N N 196 HIS HE1 H N N 197 HIS HE2 H N N 198 HIS HXT H N N 199 HOH O O N N 200 HOH H1 H N N 201 HOH H2 H N N 202 ILE N N N N 203 ILE CA C N S 204 ILE C C N N 205 ILE O O N N 206 ILE CB C N S 207 ILE CG1 C N N 208 ILE CG2 C N N 209 ILE CD1 C N N 210 ILE OXT O N N 211 ILE H H N N 212 ILE H2 H N N 213 ILE HA H N N 214 ILE HB H N N 215 ILE HG12 H N N 216 ILE HG13 H N N 217 ILE HG21 H N N 218 ILE HG22 H N N 219 ILE HG23 H N N 220 ILE HD11 H N N 221 ILE HD12 H N N 222 ILE HD13 H N N 223 ILE HXT H N N 224 LEU N N N N 225 LEU CA C N S 226 LEU C C N N 227 LEU O O N N 228 LEU CB C N N 229 LEU CG C N N 230 LEU CD1 C N N 231 LEU CD2 C N N 232 LEU OXT O N N 233 LEU H H N N 234 LEU H2 H N N 235 LEU HA H N N 236 LEU HB2 H N N 237 LEU HB3 H N N 238 LEU HG H N N 239 LEU HD11 H N N 240 LEU HD12 H N N 241 LEU HD13 H N N 242 LEU HD21 H N N 243 LEU HD22 H N N 244 LEU HD23 H N N 245 LEU HXT H N N 246 LYS N N N N 247 LYS CA C N S 248 LYS C C N N 249 LYS O O N N 250 LYS CB C N N 251 LYS CG C N N 252 LYS CD C N N 253 LYS CE C N N 254 LYS NZ N N N 255 LYS OXT O N N 256 LYS H H N N 257 LYS H2 H N N 258 LYS HA H N N 259 LYS HB2 H N N 260 LYS HB3 H N N 261 LYS HG2 H N N 262 LYS HG3 H N N 263 LYS HD2 H N N 264 LYS HD3 H N N 265 LYS HE2 H N N 266 LYS HE3 H N N 267 LYS HZ1 H N N 268 LYS HZ2 H N N 269 LYS HZ3 H N N 270 LYS HXT H N N 271 MET N N N N 272 MET CA C N S 273 MET C C N N 274 MET O O N N 275 MET CB C N N 276 MET CG C N N 277 MET SD S N N 278 MET CE C N N 279 MET OXT O N N 280 MET H H N N 281 MET H2 H N N 282 MET HA H N N 283 MET HB2 H N N 284 MET HB3 H N N 285 MET HG2 H N N 286 MET HG3 H N N 287 MET HE1 H N N 288 MET HE2 H N N 289 MET HE3 H N N 290 MET HXT H N N 291 MG MG MG N N 292 PG4 O1 O N N 293 PG4 C1 C N N 294 PG4 C2 C N N 295 PG4 O2 O N N 296 PG4 C3 C N N 297 PG4 C4 C N N 298 PG4 O3 O N N 299 PG4 C5 C N N 300 PG4 C6 C N N 301 PG4 O4 O N N 302 PG4 C7 C N N 303 PG4 C8 C N N 304 PG4 O5 O N N 305 PG4 HO1 H N N 306 PG4 H11 H N N 307 PG4 H12 H N N 308 PG4 H21 H N N 309 PG4 H22 H N N 310 PG4 H31 H N N 311 PG4 H32 H N N 312 PG4 H41 H N N 313 PG4 H42 H N N 314 PG4 H51 H N N 315 PG4 H52 H N N 316 PG4 H61 H N N 317 PG4 H62 H N N 318 PG4 H71 H N N 319 PG4 H72 H N N 320 PG4 H81 H N N 321 PG4 H82 H N N 322 PG4 HO5 H N N 323 PHE N N N N 324 PHE CA C N S 325 PHE C C N N 326 PHE O O N N 327 PHE CB C N N 328 PHE CG C Y N 329 PHE CD1 C Y N 330 PHE CD2 C Y N 331 PHE CE1 C Y N 332 PHE CE2 C Y N 333 PHE CZ C Y N 334 PHE OXT O N N 335 PHE H H N N 336 PHE H2 H N N 337 PHE HA H N N 338 PHE HB2 H N N 339 PHE HB3 H N N 340 PHE HD1 H N N 341 PHE HD2 H N N 342 PHE HE1 H N N 343 PHE HE2 H N N 344 PHE HZ H N N 345 PHE HXT H N N 346 PRO N N N N 347 PRO CA C N S 348 PRO C C N N 349 PRO O O N N 350 PRO CB C N N 351 PRO CG C N N 352 PRO CD C N N 353 PRO OXT O N N 354 PRO H H N N 355 PRO HA H N N 356 PRO HB2 H N N 357 PRO HB3 H N N 358 PRO HG2 H N N 359 PRO HG3 H N N 360 PRO HD2 H N N 361 PRO HD3 H N N 362 PRO HXT H N N 363 SER N N N N 364 SER CA C N S 365 SER C C N N 366 SER O O N N 367 SER CB C N N 368 SER OG O N N 369 SER OXT O N N 370 SER H H N N 371 SER H2 H N N 372 SER HA H N N 373 SER HB2 H N N 374 SER HB3 H N N 375 SER HG H N N 376 SER HXT H N N 377 THR N N N N 378 THR CA C N S 379 THR C C N N 380 THR O O N N 381 THR CB C N R 382 THR OG1 O N N 383 THR CG2 C N N 384 THR OXT O N N 385 THR H H N N 386 THR H2 H N N 387 THR HA H N N 388 THR HB H N N 389 THR HG1 H N N 390 THR HG21 H N N 391 THR HG22 H N N 392 THR HG23 H N N 393 THR HXT H N N 394 TRP N N N N 395 TRP CA C N S 396 TRP C C N N 397 TRP O O N N 398 TRP CB C N N 399 TRP CG C Y N 400 TRP CD1 C Y N 401 TRP CD2 C Y N 402 TRP NE1 N Y N 403 TRP CE2 C Y N 404 TRP CE3 C Y N 405 TRP CZ2 C Y N 406 TRP CZ3 C Y N 407 TRP CH2 C Y N 408 TRP OXT O N N 409 TRP H H N N 410 TRP H2 H N N 411 TRP HA H N N 412 TRP HB2 H N N 413 TRP HB3 H N N 414 TRP HD1 H N N 415 TRP HE1 H N N 416 TRP HE3 H N N 417 TRP HZ2 H N N 418 TRP HZ3 H N N 419 TRP HH2 H N N 420 TRP HXT H N N 421 TYR N N N N 422 TYR CA C N S 423 TYR C C N N 424 TYR O O N N 425 TYR CB C N N 426 TYR CG C Y N 427 TYR CD1 C Y N 428 TYR CD2 C Y N 429 TYR CE1 C Y N 430 TYR CE2 C Y N 431 TYR CZ C Y N 432 TYR OH O N N 433 TYR OXT O N N 434 TYR H H N N 435 TYR H2 H N N 436 TYR HA H N N 437 TYR HB2 H N N 438 TYR HB3 H N N 439 TYR HD1 H N N 440 TYR HD2 H N N 441 TYR HE1 H N N 442 TYR HE2 H N N 443 TYR HH H N N 444 TYR HXT H N N 445 VAL N N N N 446 VAL CA C N S 447 VAL C C N N 448 VAL O O N N 449 VAL CB C N N 450 VAL CG1 C N N 451 VAL CG2 C N N 452 VAL OXT O N N 453 VAL H H N N 454 VAL H2 H N N 455 VAL HA H N N 456 VAL HB H N N 457 VAL HG11 H N N 458 VAL HG12 H N N 459 VAL HG13 H N N 460 VAL HG21 H N N 461 VAL HG22 H N N 462 VAL HG23 H N N 463 VAL HXT H N N 464 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 CYS N CA sing N N 114 CYS N H sing N N 115 CYS N H2 sing N N 116 CYS CA C sing N N 117 CYS CA CB sing N N 118 CYS CA HA sing N N 119 CYS C O doub N N 120 CYS C OXT sing N N 121 CYS CB SG sing N N 122 CYS CB HB2 sing N N 123 CYS CB HB3 sing N N 124 CYS SG HG sing N N 125 CYS OXT HXT sing N N 126 GLN N CA sing N N 127 GLN N H sing N N 128 GLN N H2 sing N N 129 GLN CA C sing N N 130 GLN CA CB sing N N 131 GLN CA HA sing N N 132 GLN C O doub N N 133 GLN C OXT sing N N 134 GLN CB CG sing N N 135 GLN CB HB2 sing N N 136 GLN CB HB3 sing N N 137 GLN CG CD sing N N 138 GLN CG HG2 sing N N 139 GLN CG HG3 sing N N 140 GLN CD OE1 doub N N 141 GLN CD NE2 sing N N 142 GLN NE2 HE21 sing N N 143 GLN NE2 HE22 sing N N 144 GLN OXT HXT sing N N 145 GLU N CA sing N N 146 GLU N H sing N N 147 GLU N H2 sing N N 148 GLU CA C sing N N 149 GLU CA CB sing N N 150 GLU CA HA sing N N 151 GLU C O doub N N 152 GLU C OXT sing N N 153 GLU CB CG sing N N 154 GLU CB HB2 sing N N 155 GLU CB HB3 sing N N 156 GLU CG CD sing N N 157 GLU CG HG2 sing N N 158 GLU CG HG3 sing N N 159 GLU CD OE1 doub N N 160 GLU CD OE2 sing N N 161 GLU OE2 HE2 sing N N 162 GLU OXT HXT sing N N 163 GLY N CA sing N N 164 GLY N H sing N N 165 GLY N H2 sing N N 166 GLY CA C sing N N 167 GLY CA HA2 sing N N 168 GLY CA HA3 sing N N 169 GLY C O doub N N 170 GLY C OXT sing N N 171 GLY OXT HXT sing N N 172 HIS N CA sing N N 173 HIS N H sing N N 174 HIS N H2 sing N N 175 HIS CA C sing N N 176 HIS CA CB sing N N 177 HIS CA HA sing N N 178 HIS C O doub N N 179 HIS C OXT sing N N 180 HIS CB CG sing N N 181 HIS CB HB2 sing N N 182 HIS CB HB3 sing N N 183 HIS CG ND1 sing Y N 184 HIS CG CD2 doub Y N 185 HIS ND1 CE1 doub Y N 186 HIS ND1 HD1 sing N N 187 HIS CD2 NE2 sing Y N 188 HIS CD2 HD2 sing N N 189 HIS CE1 NE2 sing Y N 190 HIS CE1 HE1 sing N N 191 HIS NE2 HE2 sing N N 192 HIS OXT HXT sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 ILE N CA sing N N 196 ILE N H sing N N 197 ILE N H2 sing N N 198 ILE CA C sing N N 199 ILE CA CB sing N N 200 ILE CA HA sing N N 201 ILE C O doub N N 202 ILE C OXT sing N N 203 ILE CB CG1 sing N N 204 ILE CB CG2 sing N N 205 ILE CB HB sing N N 206 ILE CG1 CD1 sing N N 207 ILE CG1 HG12 sing N N 208 ILE CG1 HG13 sing N N 209 ILE CG2 HG21 sing N N 210 ILE CG2 HG22 sing N N 211 ILE CG2 HG23 sing N N 212 ILE CD1 HD11 sing N N 213 ILE CD1 HD12 sing N N 214 ILE CD1 HD13 sing N N 215 ILE OXT HXT sing N N 216 LEU N CA sing N N 217 LEU N H sing N N 218 LEU N H2 sing N N 219 LEU CA C sing N N 220 LEU CA CB sing N N 221 LEU CA HA sing N N 222 LEU C O doub N N 223 LEU C OXT sing N N 224 LEU CB CG sing N N 225 LEU CB HB2 sing N N 226 LEU CB HB3 sing N N 227 LEU CG CD1 sing N N 228 LEU CG CD2 sing N N 229 LEU CG HG sing N N 230 LEU CD1 HD11 sing N N 231 LEU CD1 HD12 sing N N 232 LEU CD1 HD13 sing N N 233 LEU CD2 HD21 sing N N 234 LEU CD2 HD22 sing N N 235 LEU CD2 HD23 sing N N 236 LEU OXT HXT sing N N 237 LYS N CA sing N N 238 LYS N H sing N N 239 LYS N H2 sing N N 240 LYS CA C sing N N 241 LYS CA CB sing N N 242 LYS CA HA sing N N 243 LYS C O doub N N 244 LYS C OXT sing N N 245 LYS CB CG sing N N 246 LYS CB HB2 sing N N 247 LYS CB HB3 sing N N 248 LYS CG CD sing N N 249 LYS CG HG2 sing N N 250 LYS CG HG3 sing N N 251 LYS CD CE sing N N 252 LYS CD HD2 sing N N 253 LYS CD HD3 sing N N 254 LYS CE NZ sing N N 255 LYS CE HE2 sing N N 256 LYS CE HE3 sing N N 257 LYS NZ HZ1 sing N N 258 LYS NZ HZ2 sing N N 259 LYS NZ HZ3 sing N N 260 LYS OXT HXT sing N N 261 MET N CA sing N N 262 MET N H sing N N 263 MET N H2 sing N N 264 MET CA C sing N N 265 MET CA CB sing N N 266 MET CA HA sing N N 267 MET C O doub N N 268 MET C OXT sing N N 269 MET CB CG sing N N 270 MET CB HB2 sing N N 271 MET CB HB3 sing N N 272 MET CG SD sing N N 273 MET CG HG2 sing N N 274 MET CG HG3 sing N N 275 MET SD CE sing N N 276 MET CE HE1 sing N N 277 MET CE HE2 sing N N 278 MET CE HE3 sing N N 279 MET OXT HXT sing N N 280 PG4 O1 C1 sing N N 281 PG4 O1 HO1 sing N N 282 PG4 C1 C2 sing N N 283 PG4 C1 H11 sing N N 284 PG4 C1 H12 sing N N 285 PG4 C2 O2 sing N N 286 PG4 C2 H21 sing N N 287 PG4 C2 H22 sing N N 288 PG4 O2 C3 sing N N 289 PG4 C3 C4 sing N N 290 PG4 C3 H31 sing N N 291 PG4 C3 H32 sing N N 292 PG4 C4 O3 sing N N 293 PG4 C4 H41 sing N N 294 PG4 C4 H42 sing N N 295 PG4 O3 C5 sing N N 296 PG4 C5 C6 sing N N 297 PG4 C5 H51 sing N N 298 PG4 C5 H52 sing N N 299 PG4 C6 O4 sing N N 300 PG4 C6 H61 sing N N 301 PG4 C6 H62 sing N N 302 PG4 O4 C7 sing N N 303 PG4 C7 C8 sing N N 304 PG4 C7 H71 sing N N 305 PG4 C7 H72 sing N N 306 PG4 C8 O5 sing N N 307 PG4 C8 H81 sing N N 308 PG4 C8 H82 sing N N 309 PG4 O5 HO5 sing N N 310 PHE N CA sing N N 311 PHE N H sing N N 312 PHE N H2 sing N N 313 PHE CA C sing N N 314 PHE CA CB sing N N 315 PHE CA HA sing N N 316 PHE C O doub N N 317 PHE C OXT sing N N 318 PHE CB CG sing N N 319 PHE CB HB2 sing N N 320 PHE CB HB3 sing N N 321 PHE CG CD1 doub Y N 322 PHE CG CD2 sing Y N 323 PHE CD1 CE1 sing Y N 324 PHE CD1 HD1 sing N N 325 PHE CD2 CE2 doub Y N 326 PHE CD2 HD2 sing N N 327 PHE CE1 CZ doub Y N 328 PHE CE1 HE1 sing N N 329 PHE CE2 CZ sing Y N 330 PHE CE2 HE2 sing N N 331 PHE CZ HZ sing N N 332 PHE OXT HXT sing N N 333 PRO N CA sing N N 334 PRO N CD sing N N 335 PRO N H sing N N 336 PRO CA C sing N N 337 PRO CA CB sing N N 338 PRO CA HA sing N N 339 PRO C O doub N N 340 PRO C OXT sing N N 341 PRO CB CG sing N N 342 PRO CB HB2 sing N N 343 PRO CB HB3 sing N N 344 PRO CG CD sing N N 345 PRO CG HG2 sing N N 346 PRO CG HG3 sing N N 347 PRO CD HD2 sing N N 348 PRO CD HD3 sing N N 349 PRO OXT HXT sing N N 350 SER N CA sing N N 351 SER N H sing N N 352 SER N H2 sing N N 353 SER CA C sing N N 354 SER CA CB sing N N 355 SER CA HA sing N N 356 SER C O doub N N 357 SER C OXT sing N N 358 SER CB OG sing N N 359 SER CB HB2 sing N N 360 SER CB HB3 sing N N 361 SER OG HG sing N N 362 SER OXT HXT sing N N 363 THR N CA sing N N 364 THR N H sing N N 365 THR N H2 sing N N 366 THR CA C sing N N 367 THR CA CB sing N N 368 THR CA HA sing N N 369 THR C O doub N N 370 THR C OXT sing N N 371 THR CB OG1 sing N N 372 THR CB CG2 sing N N 373 THR CB HB sing N N 374 THR OG1 HG1 sing N N 375 THR CG2 HG21 sing N N 376 THR CG2 HG22 sing N N 377 THR CG2 HG23 sing N N 378 THR OXT HXT sing N N 379 TRP N CA sing N N 380 TRP N H sing N N 381 TRP N H2 sing N N 382 TRP CA C sing N N 383 TRP CA CB sing N N 384 TRP CA HA sing N N 385 TRP C O doub N N 386 TRP C OXT sing N N 387 TRP CB CG sing N N 388 TRP CB HB2 sing N N 389 TRP CB HB3 sing N N 390 TRP CG CD1 doub Y N 391 TRP CG CD2 sing Y N 392 TRP CD1 NE1 sing Y N 393 TRP CD1 HD1 sing N N 394 TRP CD2 CE2 doub Y N 395 TRP CD2 CE3 sing Y N 396 TRP NE1 CE2 sing Y N 397 TRP NE1 HE1 sing N N 398 TRP CE2 CZ2 sing Y N 399 TRP CE3 CZ3 doub Y N 400 TRP CE3 HE3 sing N N 401 TRP CZ2 CH2 doub Y N 402 TRP CZ2 HZ2 sing N N 403 TRP CZ3 CH2 sing Y N 404 TRP CZ3 HZ3 sing N N 405 TRP CH2 HH2 sing N N 406 TRP OXT HXT sing N N 407 TYR N CA sing N N 408 TYR N H sing N N 409 TYR N H2 sing N N 410 TYR CA C sing N N 411 TYR CA CB sing N N 412 TYR CA HA sing N N 413 TYR C O doub N N 414 TYR C OXT sing N N 415 TYR CB CG sing N N 416 TYR CB HB2 sing N N 417 TYR CB HB3 sing N N 418 TYR CG CD1 doub Y N 419 TYR CG CD2 sing Y N 420 TYR CD1 CE1 sing Y N 421 TYR CD1 HD1 sing N N 422 TYR CD2 CE2 doub Y N 423 TYR CD2 HD2 sing N N 424 TYR CE1 CZ doub Y N 425 TYR CE1 HE1 sing N N 426 TYR CE2 CZ sing Y N 427 TYR CE2 HE2 sing N N 428 TYR CZ OH sing N N 429 TYR OH HH sing N N 430 TYR OXT HXT sing N N 431 VAL N CA sing N N 432 VAL N H sing N N 433 VAL N H2 sing N N 434 VAL CA C sing N N 435 VAL CA CB sing N N 436 VAL CA HA sing N N 437 VAL C O doub N N 438 VAL C OXT sing N N 439 VAL CB CG1 sing N N 440 VAL CB CG2 sing N N 441 VAL CB HB sing N N 442 VAL CG1 HG11 sing N N 443 VAL CG1 HG12 sing N N 444 VAL CG1 HG13 sing N N 445 VAL CG2 HG21 sing N N 446 VAL CG2 HG22 sing N N 447 VAL CG2 HG23 sing N N 448 VAL OXT HXT sing N N 449 # _atom_sites.entry_id 1YT0 _atom_sites.fract_transf_matrix[1][1] 0.015172 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010542 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023305 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_