HEADER PROTEIN TRAFFICKING 22-FEB-05 1YXR TITLE NMR STRUCTURE OF VPS4A MIT DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING FACTOR 4A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MIT DOMAIN; COMPND 5 SYNONYM: VPS4A ; SKD1 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: 27183; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B; SOURCE 11 OTHER_DETAILS: PET16B REENGINEERED TO CONTAIN A TEV CLEAVAGE SITE IN SOURCE 12 PLACE OF THE NORMAL FACTOR XA SITE KEYWDS VPS4; MIT DOMAIN, PROTEIN TRAFFICKING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.A.SCOTT,J.GASPAR,M.STUCHELL,S.ALAM,J.SKALICKY,W.I.SUNDQUIST REVDAT 3 02-MAR-22 1YXR 1 REMARK REVDAT 2 24-FEB-09 1YXR 1 VERSN REVDAT 1 06-SEP-05 1YXR 0 JRNL AUTH J.A.SCOTT,J.GASPAR,M.STUCHELL,S.ALAM,J.SKALICKY, JRNL AUTH 2 W.I.SUNDQUIST JRNL TITL NMR STRUCTURE OF VPS4A MIT DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 97, CNS 1.1 REMARK 3 AUTHORS : ACCELYRS, SAN DIEGO (FELIX), AT BRUNGER, ET AL. REMARK 3 (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1432 NOE REMARK 3 DERIVED DISTANCE CONSTRAINTS, 150 DIHEDRAL ANGLE CONSTRAINTS REMARK 3 (GENERATED BY TALOS) AND 114 DISTANCE CONSTRAINTS FROM HYDROGEN REMARK 3 BONDS REMARK 4 REMARK 4 1YXR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032045. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 50 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : UNIFORM LABELING WITH 15N AND REMARK 210 13C. REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.110, CYANA 2.0 REMARK 210 METHOD USED : AUTOMATED NOE ASSIGNMENT USING REMARK 210 CYANA AND TORSION ANGLE DYNAMICS REMARK 210 FOR STRUCTURE CALCULATIONS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 18 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 24 46.12 -109.04 REMARK 500 1 HIS A 48 -165.72 -108.10 REMARK 500 2 ASN A 24 46.14 -107.97 REMARK 500 2 HIS A 48 -169.15 -106.41 REMARK 500 3 ASN A 24 46.11 -106.54 REMARK 500 4 TYR A 45 -63.95 -91.02 REMARK 500 5 ASN A 24 46.18 -109.44 REMARK 500 5 HIS A 48 -165.36 -106.30 REMARK 500 7 HIS A 48 -167.16 -114.82 REMARK 500 8 HIS A 48 -168.13 -127.96 REMARK 500 9 HIS A 48 -166.92 -105.23 REMARK 500 10 HIS A 48 -167.79 -100.08 REMARK 500 11 TYR A 45 -64.39 -90.53 REMARK 500 11 HIS A 48 -168.40 -120.56 REMARK 500 14 HIS A 48 -168.04 -107.01 REMARK 500 15 HIS A 48 -166.27 -107.16 REMARK 500 18 HIS A 48 -168.33 -77.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XWI RELATED DB: PDB REMARK 900 VPS4B CRYSTAL STUCTURE DBREF 1YXR A 1 77 UNP Q9UN37 VPS4A_HUMAN 1 77 SEQRES 1 A 77 MET THR THR SER THR LEU GLN LYS ALA ILE ASP LEU VAL SEQRES 2 A 77 THR LYS ALA THR GLU GLU ASP LYS ALA LYS ASN TYR GLU SEQRES 3 A 77 GLU ALA LEU ARG LEU TYR GLN HIS ALA VAL GLU TYR PHE SEQRES 4 A 77 LEU HIS ALA ILE LYS TYR GLU ALA HIS SER ASP LYS ALA SEQRES 5 A 77 LYS GLU SER ILE ARG ALA LYS CYS VAL GLN TYR LEU ASP SEQRES 6 A 77 ARG ALA GLU LYS LEU LYS ASP TYR LEU ARG SER LYS HELIX 1 1 SER A 4 ALA A 22 1 19 HELIX 2 2 ASN A 24 GLU A 46 1 23 HELIX 3 3 SER A 49 LYS A 77 1 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1