HEADER HYDROLASE 23-FEB-05 1YY6 TITLE THE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF HAUSP/USP7 COMPLEXED TITLE 2 WITH AN EBNA1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBIQUITIN THIOLESTERASE 7, UBIQUITIN-SPECIFIC PROCESSING COMPND 5 PROTEASE 7, DEUBIQUITINATING ENZYME 7, HERPESVIRUS ASSOCIATED COMPND 6 UBIQUITIN-SPECIFIC PROTEASE, USP7, HAUSP; COMPND 7 EC: 3.1.2.15; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: EPSTEIN-BARR NUCLEAR ANTIGEN-1; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: EBNA1; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: USP7 BINDING PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP7, HAUSP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE SEQUENCE OF THE PEPTIDE CAN BE FOUND NATURALLY IN SOURCE 14 EPSTEIN-BARR VIRUS KEYWDS TRAF-DOMAIN, PEPTIDE BINDING SITE, PROTEIN PEPTIDE COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.SARIDAKIS,Y.SHENG,F.SARKARI,M.HOLOWATY,K.SHIRE,T.NGUYEN,R.ZHANG, AUTHOR 2 J.LIAO,W.LEE,A.M.EDWARDS,C.H.ARROWSMITH,L.FRAPPIER REVDAT 4 14-FEB-24 1YY6 1 REMARK LINK REVDAT 3 21-DEC-16 1YY6 1 TITLE VERSN REVDAT 2 24-FEB-09 1YY6 1 VERSN REVDAT 1 05-APR-05 1YY6 0 JRNL AUTH V.SARIDAKIS,Y.SHENG,F.SARKARI,M.N.HOLOWATY,K.SHIRE,T.NGUYEN, JRNL AUTH 2 R.G.ZHANG,J.LIAO,W.LEE,A.M.EDWARDS,C.H.ARROWSMITH,L.FRAPPIER JRNL TITL STRUCTURE OF THE P53 BINDING DOMAIN OF HAUSP/USP7 BOUND TO JRNL TITL 2 EPSTEIN-BARR NUCLEAR ANTIGEN 1 IMPLICATIONS FOR EBV-MEDIATED JRNL TITL 3 IMMORTALIZATION. JRNL REF MOL.CELL V. 18 25 2005 JRNL REFN ISSN 1097-2765 JRNL PMID 15808506 JRNL DOI 10.1016/J.MOLCEL.2005.02.029 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 310292.970 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 23323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1846 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3125 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 350 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1186 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.240 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.060 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.270 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.380 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.57 REMARK 3 BSOL : 101.5 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23323 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53400 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG 4000, 0.1 M TRIS PH 8.5, 0.2 REMARK 280 M LITHIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.96500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.48250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.44750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -188.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 51 REMARK 465 SER A 52 REMARK 465 HIS A 53 REMARK 465 THR A 54 REMARK 465 ALA A 55 REMARK 465 GLU A 56 REMARK 465 GLU A 57 REMARK 465 ASP A 58 REMARK 465 MET A 59 REMARK 465 GLU A 60 REMARK 465 ASP A 61 REMARK 465 ASP A 62 REMARK 465 TYR A 106 REMARK 465 PRO A 107 REMARK 465 ASP A 108 REMARK 465 ARG A 109 REMARK 465 PRO A 110 REMARK 465 HIS A 111 REMARK 465 GLY B 449 REMARK 465 PRO B 450 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 82 -35.34 -133.36 REMARK 500 LYS A 113 -81.15 74.99 REMARK 500 ASP A 145 107.89 -160.50 REMARK 500 VAL A 203 -76.29 -123.65 REMARK 500 PRO B 442 0.05 -68.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1019 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 67 O REMARK 620 2 ALA A 197 O 64.4 REMARK 620 3 HOH A2007 O 82.7 133.7 REMARK 620 4 HOH A2149 O 126.5 72.5 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1021 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 74 N REMARK 620 2 HOH A2077 O 115.2 REMARK 620 3 HOH A2133 O 72.4 103.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1004 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 87 O REMARK 620 2 LYS A 98 NZ 111.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1005 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 88 O REMARK 620 2 HOH A2116 O 142.2 REMARK 620 3 HOH A2117 O 114.9 64.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1016 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 91 N REMARK 620 2 HOH A2051 O 104.5 REMARK 620 3 HOH A2085 O 125.2 86.2 REMARK 620 4 HOH A2142 O 113.0 115.4 109.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1020 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 96 O REMARK 620 2 GLN A 120 NE2 146.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1006 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 98 NZ REMARK 620 2 GLN A 120 NE2 111.1 REMARK 620 3 HOH A2111 O 126.2 122.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1014 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 98 NZ REMARK 620 2 HOH A2184 O 78.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 120 OE1 REMARK 620 2 ASN A 163 OD1 105.9 REMARK 620 3 ASP A 164 OD2 132.2 92.7 REMARK 620 4 HOH A2076 O 87.1 118.2 122.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1008 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 122 O REMARK 620 2 SER A 125 O 107.5 REMARK 620 3 HOH A2080 O 106.8 111.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1009 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 122 ND2 REMARK 620 2 SER A 125 N 105.2 REMARK 620 3 HOH A2081 O 117.4 86.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1011 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 124 N REMARK 620 2 HOH A2186 O 118.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 129 O REMARK 620 2 SER A 131 OG 134.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1007 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 130 O REMARK 620 2 HIS A 160 N 101.1 REMARK 620 3 HIS A 160 ND1 158.7 71.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1012 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 141 O REMARK 620 2 PHE A 183 O 97.4 REMARK 620 3 THR A 190 N 136.3 110.9 REMARK 620 4 HOH A2064 O 98.9 117.3 96.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1013 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 176 O REMARK 620 2 ASP A 178 O 105.6 REMARK 620 3 PHE A 183 N 115.1 137.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1010 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 186 O REMARK 620 2 HOH A2104 O 95.2 REMARK 620 3 HOH A2121 O 118.1 100.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1017 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 199 O REMARK 620 2 HOH A2058 O 105.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1015 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1016 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1017 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1018 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1019 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1020 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1021 DBREF 1YY6 A 54 204 UNP Q93009 UBP7_HUMAN 54 204 DBREF 1YY6 B 441 450 PDB 1YY6 1YY6 441 450 SEQADV 1YY6 GLY A 51 UNP Q93009 CLONING ARTIFACT SEQADV 1YY6 SER A 52 UNP Q93009 CLONING ARTIFACT SEQADV 1YY6 HIS A 53 UNP Q93009 CLONING ARTIFACT SEQRES 1 A 155 GLY SER HIS THR ALA GLU GLU ASP MET GLU ASP ASP THR SEQRES 2 A 155 SER TRP ARG SER GLU ALA THR PHE GLN PHE THR VAL GLU SEQRES 3 A 155 ARG PHE SER ARG LEU SER GLU SER VAL LEU SER PRO PRO SEQRES 4 A 155 CYS PHE VAL ARG ASN LEU PRO TRP LYS ILE MET VAL MET SEQRES 5 A 155 PRO ARG PHE TYR PRO ASP ARG PRO HIS GLN LYS SER VAL SEQRES 6 A 155 GLY PHE PHE LEU GLN CYS ASN ALA GLU SER ASP SER THR SEQRES 7 A 155 SER TRP SER CYS HIS ALA GLN ALA VAL LEU LYS ILE ILE SEQRES 8 A 155 ASN TYR ARG ASP ASP GLU LYS SER PHE SER ARG ARG ILE SEQRES 9 A 155 SER HIS LEU PHE PHE HIS LYS GLU ASN ASP TRP GLY PHE SEQRES 10 A 155 SER ASN PHE MET ALA TRP SER GLU VAL THR ASP PRO GLU SEQRES 11 A 155 LYS GLY PHE ILE ASP ASP ASP LYS VAL THR PHE GLU VAL SEQRES 12 A 155 PHE VAL GLN ALA ASP ALA PRO HIS GLY VAL ALA TRP SEQRES 1 B 10 ASP PRO GLY GLU GLY PRO SER THR GLY PRO HET NA A1001 1 HET NA A1002 1 HET NA A1003 1 HET NA A1004 1 HET NA A1005 1 HET NA A1006 1 HET NA A1007 1 HET NA A1008 1 HET NA A1009 1 HET NA A1010 1 HET NA A1011 1 HET NA A1012 1 HET NA A1013 1 HET NA A1014 1 HET NA A1015 1 HET NA A1016 1 HET NA A1017 1 HET NA A1018 1 HET NA A1019 1 HET NA A1020 1 HET NA A1021 1 HETNAM NA SODIUM ION FORMUL 3 NA 21(NA 1+) FORMUL 24 HOH *186(H2 O) HELIX 1 1 ARG A 77 LEU A 81 5 5 HELIX 2 2 ASP A 145 SER A 149 5 5 HELIX 3 3 TRP A 173 THR A 177 1 5 SHEET 1 A 4 GLU A 68 VAL A 75 0 SHEET 2 A 4 VAL A 189 ALA A 197 -1 O PHE A 191 N PHE A 73 SHEET 3 A 4 SER A 131 ILE A 140 -1 N LYS A 139 O GLU A 192 SHEET 4 A 4 PHE A 150 PHE A 159 -1 O PHE A 150 N ILE A 140 SHEET 1 B 3 VAL A 85 LEU A 86 0 SHEET 2 B 3 LEU A 95 ARG A 104 -1 O VAL A 101 N VAL A 85 SHEET 3 B 3 CYS A 90 VAL A 92 -1 N CYS A 90 O TRP A 97 SHEET 1 C 5 VAL A 85 LEU A 86 0 SHEET 2 C 5 LEU A 95 ARG A 104 -1 O VAL A 101 N VAL A 85 SHEET 3 C 5 SER A 114 CYS A 121 -1 O GLY A 116 N MET A 102 SHEET 4 C 5 ASP A 164 ALA A 172 -1 O MET A 171 N VAL A 115 SHEET 5 C 5 GLU B 444 GLY B 445 -1 O GLY B 445 N GLY A 166 LINK O SER A 67 NA NA A1019 1555 1555 3.13 LINK O GLN A 72 NA NA A1015 1555 1555 2.67 LINK N THR A 74 NA NA A1021 1555 1555 2.99 LINK O SER A 87 NA NA A1004 1555 1555 2.78 LINK O PRO A 88 NA NA A1005 1555 1555 3.00 LINK N PHE A 91 NA NA A1016 1555 1555 2.92 LINK O PRO A 96 NA NA A1020 1555 1555 3.18 LINK NZ LYS A 98 NA NA A1004 1555 1555 2.83 LINK NZ LYS A 98 NA NA A1006 1555 1555 2.70 LINK NZ LYS A 98 NA NA A1014 1555 1555 2.94 LINK OE1 GLN A 120 NA NA A1001 1555 1555 2.99 LINK NE2 GLN A 120 NA NA A1006 1555 1555 2.73 LINK NE2 GLN A 120 NA NA A1020 1555 1555 2.68 LINK O ASN A 122 NA NA A1008 1555 1555 2.63 LINK ND2 ASN A 122 NA NA A1009 1555 1555 2.49 LINK N GLU A 124 NA NA A1011 1555 1555 2.97 LINK O SER A 125 NA NA A1008 1555 1555 2.77 LINK N SER A 125 NA NA A1009 1555 1555 2.98 LINK O SER A 129 NA NA A1002 1555 1555 2.87 LINK O TRP A 130 NA NA A1007 1555 1555 2.53 LINK OG SER A 131 NA NA A1002 1555 1555 2.67 LINK OG SER A 131 NA NA A1018 1555 1555 2.75 LINK O ILE A 141 NA NA A1012 1555 1555 2.60 LINK N HIS A 160 NA NA A1007 1555 1555 2.93 LINK ND1 HIS A 160 NA NA A1007 1555 1555 2.89 LINK OD1 ASN A 163 NA NA A1001 1555 1555 2.70 LINK OD2 ASP A 164 NA NA A1001 1555 1555 2.59 LINK O VAL A 176 NA NA A1013 1555 1555 2.90 LINK O ASP A 178 NA NA A1013 1555 1555 2.60 LINK O PHE A 183 NA NA A1012 1555 1555 2.75 LINK N PHE A 183 NA NA A1013 1555 1555 2.78 LINK O ASP A 186 NA NA A1010 1555 1555 2.77 LINK N THR A 190 NA NA A1012 1555 1555 2.89 LINK O ALA A 197 NA NA A1019 1555 1555 3.10 LINK O ALA A 199 NA NA A1017 1555 1555 2.84 LINK NA NA A1001 O HOH A2076 1555 1555 2.61 LINK NA NA A1005 O HOH A2116 1555 1555 2.92 LINK NA NA A1005 O HOH A2117 1555 1555 3.09 LINK NA NA A1006 O HOH A2111 1555 1555 2.79 LINK NA NA A1008 O HOH A2080 1555 1555 2.70 LINK NA NA A1009 O HOH A2081 1555 1555 2.86 LINK NA NA A1010 O HOH A2104 1555 1555 2.77 LINK NA NA A1010 O HOH A2121 1555 1555 2.60 LINK NA NA A1011 O HOH A2186 1555 1555 2.93 LINK NA NA A1012 O HOH A2064 1555 1555 2.94 LINK NA NA A1014 O HOH A2184 1555 1555 2.74 LINK NA NA A1016 O HOH A2051 1555 1555 2.83 LINK NA NA A1016 O HOH A2085 1555 1555 3.02 LINK NA NA A1016 O HOH A2142 1555 1555 3.03 LINK NA NA A1017 O HOH A2058 1555 1555 2.66 LINK NA NA A1019 O HOH A2007 1555 1555 2.88 LINK NA NA A1019 O HOH A2149 1555 1555 2.73 LINK NA NA A1021 O HOH A2077 1555 1555 2.80 LINK NA NA A1021 O HOH A2133 1555 1555 2.72 SITE 1 AC1 5 MET A 100 GLN A 120 ASN A 163 ASP A 164 SITE 2 AC1 5 HOH A2076 SITE 1 AC2 7 LEU A 86 SER A 87 PRO A 88 SER A 129 SITE 2 AC2 7 TRP A 130 SER A 131 HIS A 201 SITE 1 AC3 4 SER A 127 THR A 128 HOH A2036 HOH A2077 SITE 1 AC4 4 SER A 87 LYS A 98 SER A 131 NA A1014 SITE 1 AC5 5 PRO A 88 PRO A 89 NA A1015 HOH A2116 SITE 2 AC5 5 HOH A2117 SITE 1 AC6 7 LEU A 86 LYS A 98 GLN A 120 NA A1011 SITE 2 AC6 7 NA A1014 NA A1020 HOH A2111 SITE 1 AC7 5 PRO A 88 THR A 128 TRP A 130 PHE A 159 SITE 2 AC7 5 HIS A 160 SITE 1 AC8 4 ASN A 122 SER A 125 TRP A 130 HOH A2080 SITE 1 AC9 6 PRO A 96 ASN A 122 GLU A 124 SER A 125 SITE 2 AC9 6 NA A1011 HOH A2081 SITE 1 BC1 6 ARG A 77 ASP A 186 ASP A 187 LYS A 188 SITE 2 BC1 6 HOH A2104 HOH A2121 SITE 1 BC2 7 PRO A 96 ALA A 123 GLU A 124 NA A1006 SITE 2 BC2 7 NA A1009 NA A1020 HOH A2186 SITE 1 BC3 4 ILE A 141 PHE A 183 THR A 190 HOH A2064 SITE 1 BC4 6 VAL A 176 ASP A 178 LYS A 181 GLY A 182 SITE 2 BC4 6 PHE A 183 ILE A 184 SITE 1 BC5 8 LEU A 86 LYS A 98 LEU A 157 NA A1004 SITE 2 BC5 8 NA A1006 NA A1018 HOH A2152 HOH A2184 SITE 1 BC6 4 GLN A 72 PRO A 88 NA A1005 HOH A2018 SITE 1 BC7 5 ARG A 66 PHE A 91 HOH A2051 HOH A2085 SITE 2 BC7 5 HOH A2142 SITE 1 BC8 6 CYS A 132 HIS A 133 ASP A 198 ALA A 199 SITE 2 BC8 6 NA A1018 HOH A2058 SITE 1 BC9 5 SER A 131 LEU A 157 HIS A 201 NA A1014 SITE 2 BC9 5 NA A1017 SITE 1 CC1 5 SER A 67 GLN A 196 ALA A 197 HOH A2007 SITE 2 CC1 5 HOH A2149 SITE 1 CC2 6 PRO A 96 GLN A 120 ASN A 122 ALA A 123 SITE 2 CC2 6 NA A1006 NA A1011 SITE 1 CC3 5 PHE A 73 THR A 74 HOH A2018 HOH A2077 SITE 2 CC3 5 HOH A2133 CRYST1 70.050 70.050 45.930 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014276 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021772 0.00000