HEADER PROTEIN TRANSPORT 28-FEB-05 1YZT TITLE GPPNHP-BOUND RAB21 GTPASE AT 2.05 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-21; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAB21, KIAA0118; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS-RIL CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: GST FUSION, PGEX; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS RAB GTPASE, RAB21, VESICULAR TRAFFICKING, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.EATHIRAJ,X.PAN,C.RITACCO,D.G.LAMBRIGHT REVDAT 4 03-APR-24 1YZT 1 REMARK REVDAT 3 14-FEB-24 1YZT 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1YZT 1 VERSN REVDAT 1 26-JUL-05 1YZT 0 JRNL AUTH S.EATHIRAJ,X.PAN,C.RITACCO,D.G.LAMBRIGHT JRNL TITL STRUCTURAL BASIS OF FAMILY-WIDE RAB GTPASE RECOGNITION BY JRNL TITL 2 RABENOSYN-5. JRNL REF NATURE V. 436 415 2005 JRNL REFN ISSN 0028-0836 JRNL PMID 16034420 JRNL DOI 10.1038/NATURE03798 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1219 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1581 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2395 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 475 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.90000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.228 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.231 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2493 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2255 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3371 ; 1.260 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5253 ; 0.755 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 6.137 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;33.772 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;13.691 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.942 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2699 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 471 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 561 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2271 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1161 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1321 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 402 ; 0.211 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.042 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.042 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 42 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1997 ; 1.105 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 643 ; 0.105 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2423 ; 1.028 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1166 ; 1.800 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 948 ; 2.430 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032118. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23946 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36800 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: POLYALANINE RAB3A GTPASE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 6000, 200MM LITHIUM SUFATE, REMARK 280 50MM TRIS, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.17850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.28350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.17850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.28350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 PRO A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 ARG A 16 REMARK 465 GLN A 78 REMARK 465 GLU A 79 REMARK 465 ARG A 80 REMARK 465 PHE A 81 REMARK 465 HIS A 82 REMARK 465 ALA A 83 REMARK 465 LEU A 84 REMARK 465 GLY A 85 REMARK 465 PRO A 86 REMARK 465 ILE A 87 REMARK 465 TYR A 88 REMARK 465 TYR A 89 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 GLY B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 VAL B 11 REMARK 465 PRO B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 ARG B 16 REMARK 465 GLY B 77 REMARK 465 GLN B 78 REMARK 465 GLU B 79 REMARK 465 ARG B 80 REMARK 465 PHE B 81 REMARK 465 HIS B 82 REMARK 465 ALA B 83 REMARK 465 LEU B 84 REMARK 465 GLY B 85 REMARK 465 PRO B 86 REMARK 465 ILE B 87 REMARK 465 TYR B 88 REMARK 465 TYR B 89 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 ASN A 112 CG OD1 ND2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 THR A 183 OG1 CG2 REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 112 CG OD1 ND2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 THR B 183 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 873 O HOH B 909 2.16 REMARK 500 O HOH A 878 O HOH A 887 2.17 REMARK 500 O HOH B 904 O HOH B 934 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 133 37.64 75.04 REMARK 500 LEU A 136 37.22 -91.14 REMARK 500 LYS B 133 32.10 84.57 REMARK 500 LEU B 136 40.74 -94.35 REMARK 500 GLU B 182 59.31 -67.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 700 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 33 OG1 REMARK 620 2 THR A 51 OG1 87.2 REMARK 620 3 GNP A 701 O2G 176.5 90.0 REMARK 620 4 GNP A 701 O2B 95.9 175.8 87.1 REMARK 620 5 HOH A 704 O 91.6 87.4 90.4 89.6 REMARK 620 6 HOH A 716 O 85.0 93.7 93.0 89.5 176.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 800 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 33 OG1 REMARK 620 2 THR B 51 OG1 85.9 REMARK 620 3 GNP B 801 O2G 173.5 93.4 REMARK 620 4 GNP B 801 O2B 92.5 175.3 87.6 REMARK 620 5 HOH B 803 O 92.0 92.4 94.4 92.1 REMARK 620 6 HOH B 870 O 90.8 95.0 82.9 80.5 172.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 801 DBREF 1YZT A 16 183 UNP Q9UL25 RAB21_HUMAN 16 183 DBREF 1YZT B 16 183 UNP Q9UL25 RAB21_HUMAN 16 183 SEQADV 1YZT MET A 0 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT GLY A 1 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT HIS A 2 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT HIS A 3 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT HIS A 4 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT HIS A 5 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT HIS A 6 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT HIS A 7 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT GLY A 8 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT SER A 9 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT LEU A 10 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT VAL A 11 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT PRO A 12 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT ARG A 13 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT GLY A 14 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT SER A 15 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT MET B 0 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT GLY B 1 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT HIS B 2 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT HIS B 3 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT HIS B 4 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT HIS B 5 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT HIS B 6 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT HIS B 7 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT GLY B 8 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT SER B 9 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT LEU B 10 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT VAL B 11 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT PRO B 12 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT ARG B 13 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT GLY B 14 UNP Q9UL25 CLONING ARTIFACT SEQADV 1YZT SER B 15 UNP Q9UL25 CLONING ARTIFACT SEQRES 1 A 184 MET GLY HIS HIS HIS HIS HIS HIS GLY SER LEU VAL PRO SEQRES 2 A 184 ARG GLY SER ARG ALA TYR SER PHE LYS VAL VAL LEU LEU SEQRES 3 A 184 GLY GLU GLY CYS VAL GLY LYS THR SER LEU VAL LEU ARG SEQRES 4 A 184 TYR CYS GLU ASN LYS PHE ASN ASP LYS HIS ILE THR THR SEQRES 5 A 184 LEU GLN ALA SER PHE LEU THR LYS LYS LEU ASN ILE GLY SEQRES 6 A 184 GLY LYS ARG VAL ASN LEU ALA ILE TRP ASP THR ALA GLY SEQRES 7 A 184 GLN GLU ARG PHE HIS ALA LEU GLY PRO ILE TYR TYR ARG SEQRES 8 A 184 ASP SER ASN GLY ALA ILE LEU VAL TYR ASP ILE THR ASP SEQRES 9 A 184 GLU ASP SER PHE GLN LYS VAL LYS ASN TRP VAL LYS GLU SEQRES 10 A 184 LEU ARG LYS MET LEU GLY ASN GLU ILE CYS LEU CYS ILE SEQRES 11 A 184 VAL GLY ASN LYS ILE ASP LEU GLU LYS GLU ARG HIS VAL SEQRES 12 A 184 SER ILE GLN GLU ALA GLU SER TYR ALA GLU SER VAL GLY SEQRES 13 A 184 ALA LYS HIS TYR HIS THR SER ALA LYS GLN ASN LYS GLY SEQRES 14 A 184 ILE GLU GLU LEU PHE LEU ASP LEU CYS LYS ARG MET ILE SEQRES 15 A 184 GLU THR SEQRES 1 B 184 MET GLY HIS HIS HIS HIS HIS HIS GLY SER LEU VAL PRO SEQRES 2 B 184 ARG GLY SER ARG ALA TYR SER PHE LYS VAL VAL LEU LEU SEQRES 3 B 184 GLY GLU GLY CYS VAL GLY LYS THR SER LEU VAL LEU ARG SEQRES 4 B 184 TYR CYS GLU ASN LYS PHE ASN ASP LYS HIS ILE THR THR SEQRES 5 B 184 LEU GLN ALA SER PHE LEU THR LYS LYS LEU ASN ILE GLY SEQRES 6 B 184 GLY LYS ARG VAL ASN LEU ALA ILE TRP ASP THR ALA GLY SEQRES 7 B 184 GLN GLU ARG PHE HIS ALA LEU GLY PRO ILE TYR TYR ARG SEQRES 8 B 184 ASP SER ASN GLY ALA ILE LEU VAL TYR ASP ILE THR ASP SEQRES 9 B 184 GLU ASP SER PHE GLN LYS VAL LYS ASN TRP VAL LYS GLU SEQRES 10 B 184 LEU ARG LYS MET LEU GLY ASN GLU ILE CYS LEU CYS ILE SEQRES 11 B 184 VAL GLY ASN LYS ILE ASP LEU GLU LYS GLU ARG HIS VAL SEQRES 12 B 184 SER ILE GLN GLU ALA GLU SER TYR ALA GLU SER VAL GLY SEQRES 13 B 184 ALA LYS HIS TYR HIS THR SER ALA LYS GLN ASN LYS GLY SEQRES 14 B 184 ILE GLU GLU LEU PHE LEU ASP LEU CYS LYS ARG MET ILE SEQRES 15 B 184 GLU THR HET MG A 700 1 HET GNP A 701 32 HET MG B 800 1 HET GNP B 801 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 3 MG 2(MG 2+) FORMUL 4 GNP 2(C10 H17 N6 O13 P3) FORMUL 7 HOH *475(H2 O) HELIX 1 1 GLY A 31 ASN A 42 1 12 HELIX 2 2 ASP A 103 GLY A 122 1 20 HELIX 3 3 ASN A 123 ILE A 125 5 3 HELIX 4 4 LYS A 133 ARG A 140 5 8 HELIX 5 5 SER A 143 VAL A 154 1 12 HELIX 6 6 GLY A 168 THR A 183 1 16 HELIX 7 7 GLY B 31 ASN B 42 1 12 HELIX 8 8 ASP B 103 LYS B 109 1 7 HELIX 9 9 LYS B 109 GLY B 122 1 14 HELIX 10 10 ASN B 123 ILE B 125 5 3 HELIX 11 11 ILE B 134 ARG B 140 5 7 HELIX 12 12 SER B 143 VAL B 154 1 12 HELIX 13 13 GLY B 168 GLU B 182 1 15 SHEET 1 A 6 SER A 55 ILE A 63 0 SHEET 2 A 6 LYS A 66 ASP A 74 -1 O LEU A 70 N LYS A 59 SHEET 3 A 6 TYR A 18 LEU A 25 1 N VAL A 22 O TRP A 73 SHEET 4 A 6 GLY A 94 ASP A 100 1 O ILE A 96 N VAL A 23 SHEET 5 A 6 CYS A 126 ASN A 132 1 O CYS A 128 N LEU A 97 SHEET 6 A 6 LYS A 157 HIS A 160 1 O TYR A 159 N GLY A 131 SHEET 1 B 6 SER B 55 ILE B 63 0 SHEET 2 B 6 LYS B 66 ASP B 74 -1 O LEU B 70 N LYS B 59 SHEET 3 B 6 TYR B 18 LEU B 25 1 N PHE B 20 O ALA B 71 SHEET 4 B 6 GLY B 94 ASP B 100 1 O VAL B 98 N LEU B 25 SHEET 5 B 6 CYS B 126 ASN B 132 1 O VAL B 130 N TYR B 99 SHEET 6 B 6 LYS B 157 THR B 161 1 O TYR B 159 N GLY B 131 LINK OG1 THR A 33 MG MG A 700 1555 1555 2.05 LINK OG1 THR A 51 MG MG A 700 1555 1555 2.01 LINK MG MG A 700 O2G GNP A 701 1555 1555 2.07 LINK MG MG A 700 O2B GNP A 701 1555 1555 1.99 LINK MG MG A 700 O HOH A 704 1555 1555 2.01 LINK MG MG A 700 O HOH A 716 1555 1555 2.03 LINK OG1 THR B 33 MG MG B 800 1555 1555 2.06 LINK OG1 THR B 51 MG MG B 800 1555 1555 2.13 LINK MG MG B 800 O2G GNP B 801 1555 1555 1.93 LINK MG MG B 800 O2B GNP B 801 1555 1555 2.08 LINK MG MG B 800 O HOH B 803 1555 1555 2.05 LINK MG MG B 800 O HOH B 870 1555 1555 2.06 SITE 1 AC1 5 THR A 33 THR A 51 GNP A 701 HOH A 704 SITE 2 AC1 5 HOH A 716 SITE 1 AC2 5 THR B 33 THR B 51 GNP B 801 HOH B 803 SITE 2 AC2 5 HOH B 870 SITE 1 AC3 27 GLY A 28 GLY A 31 LYS A 32 THR A 33 SITE 2 AC3 27 SER A 34 PHE A 44 ASN A 45 ASP A 46 SITE 3 AC3 27 HIS A 48 THR A 50 THR A 51 GLY A 77 SITE 4 AC3 27 ASN A 132 LYS A 133 ASP A 135 LEU A 136 SITE 5 AC3 27 SER A 162 ALA A 163 LYS A 164 MG A 700 SITE 6 AC3 27 HOH A 704 HOH A 711 HOH A 716 HOH A 731 SITE 7 AC3 27 HOH A 750 HOH A 771 HOH A 907 SITE 1 AC4 27 GLY B 28 CYS B 29 GLY B 31 LYS B 32 SITE 2 AC4 27 THR B 33 SER B 34 PHE B 44 ASN B 45 SITE 3 AC4 27 ASP B 46 HIS B 48 THR B 50 THR B 51 SITE 4 AC4 27 ASN B 132 LYS B 133 ASP B 135 LEU B 136 SITE 5 AC4 27 SER B 162 ALA B 163 LYS B 164 MG B 800 SITE 6 AC4 27 HOH B 803 HOH B 808 HOH B 813 HOH B 830 SITE 7 AC4 27 HOH B 846 HOH B 870 HOH B 898 CRYST1 130.357 36.567 86.666 90.00 113.40 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007671 0.000000 0.003320 0.00000 SCALE2 0.000000 0.027347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012573 0.00000