data_1Z0F # _entry.id 1Z0F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Z0F pdb_00001z0f 10.2210/pdb1z0f/pdb RCSB RCSB032140 ? ? WWPDB D_1000032140 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 4 'Structure model' '_struct_ref_seq_dif.details' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Z0F _pdbx_database_status.recvd_initial_deposition_date 2005-03-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eathiraj, S.' 1 'Pan, X.' 2 'Ritacco, C.' 3 'Lambright, D.G.' 4 # _citation.id primary _citation.title 'Structural basis of family-wide Rab GTPase recognition by rabenosyn-5.' _citation.journal_abbrev Nature _citation.journal_volume 436 _citation.page_first 415 _citation.page_last 419 _citation.year 2005 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16034420 _citation.pdbx_database_id_DOI 10.1038/nature03798 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Eathiraj, S.' 1 ? primary 'Pan, X.' 2 ? primary 'Ritacco, C.' 3 ? primary 'Lambright, D.G.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RAB14, member RAS oncogene family' 20098.721 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 4 water nat water 18.015 88 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK TGENVEDAFLEAAKKIYQN ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK TGENVEDAFLEAAKKIYQN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "GUANOSINE-5'-DIPHOSPHATE" GDP 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 ALA n 1 7 THR n 1 8 ALA n 1 9 PRO n 1 10 TYR n 1 11 ASN n 1 12 TYR n 1 13 SER n 1 14 TYR n 1 15 ILE n 1 16 PHE n 1 17 LYS n 1 18 TYR n 1 19 ILE n 1 20 ILE n 1 21 ILE n 1 22 GLY n 1 23 ASP n 1 24 MET n 1 25 GLY n 1 26 VAL n 1 27 GLY n 1 28 LYS n 1 29 SER n 1 30 CYS n 1 31 LEU n 1 32 LEU n 1 33 HIS n 1 34 GLN n 1 35 PHE n 1 36 THR n 1 37 GLU n 1 38 LYS n 1 39 LYS n 1 40 PHE n 1 41 MET n 1 42 ALA n 1 43 ASP n 1 44 CYS n 1 45 PRO n 1 46 HIS n 1 47 THR n 1 48 ILE n 1 49 GLY n 1 50 VAL n 1 51 GLU n 1 52 PHE n 1 53 GLY n 1 54 THR n 1 55 ARG n 1 56 ILE n 1 57 ILE n 1 58 GLU n 1 59 VAL n 1 60 SER n 1 61 GLY n 1 62 GLN n 1 63 LYS n 1 64 ILE n 1 65 LYS n 1 66 LEU n 1 67 GLN n 1 68 ILE n 1 69 TRP n 1 70 ASP n 1 71 THR n 1 72 ALA n 1 73 GLY n 1 74 GLN n 1 75 GLU n 1 76 ARG n 1 77 PHE n 1 78 ARG n 1 79 ALA n 1 80 VAL n 1 81 THR n 1 82 ARG n 1 83 SER n 1 84 TYR n 1 85 TYR n 1 86 ARG n 1 87 GLY n 1 88 ALA n 1 89 ALA n 1 90 GLY n 1 91 ALA n 1 92 LEU n 1 93 MET n 1 94 VAL n 1 95 TYR n 1 96 ASP n 1 97 ILE n 1 98 THR n 1 99 ARG n 1 100 ARG n 1 101 SER n 1 102 THR n 1 103 TYR n 1 104 ASN n 1 105 HIS n 1 106 LEU n 1 107 SER n 1 108 SER n 1 109 TRP n 1 110 LEU n 1 111 THR n 1 112 ASP n 1 113 ALA n 1 114 ARG n 1 115 ASN n 1 116 LEU n 1 117 THR n 1 118 ASN n 1 119 PRO n 1 120 ASN n 1 121 THR n 1 122 VAL n 1 123 ILE n 1 124 ILE n 1 125 LEU n 1 126 ILE n 1 127 GLY n 1 128 ASN n 1 129 LYS n 1 130 ALA n 1 131 ASP n 1 132 LEU n 1 133 GLU n 1 134 ALA n 1 135 GLN n 1 136 ARG n 1 137 ASP n 1 138 VAL n 1 139 THR n 1 140 TYR n 1 141 GLU n 1 142 GLU n 1 143 ALA n 1 144 LYS n 1 145 GLN n 1 146 PHE n 1 147 ALA n 1 148 GLU n 1 149 GLU n 1 150 ASN n 1 151 GLY n 1 152 LEU n 1 153 LEU n 1 154 PHE n 1 155 LEU n 1 156 GLU n 1 157 ALA n 1 158 SER n 1 159 ALA n 1 160 LYS n 1 161 THR n 1 162 GLY n 1 163 GLU n 1 164 ASN n 1 165 VAL n 1 166 GLU n 1 167 ASP n 1 168 ALA n 1 169 PHE n 1 170 LEU n 1 171 GLU n 1 172 ALA n 1 173 ALA n 1 174 LYS n 1 175 LYS n 1 176 ILE n 1 177 TYR n 1 178 GLN n 1 179 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) Codon Plus-RIL Cells' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'GST fusion, pGEX' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX6P1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 LEU 3 -1 ? ? ? A . n A 1 4 GLY 4 0 ? ? ? A . n A 1 5 SER 5 1 ? ? ? A . n A 1 6 ALA 6 2 ? ? ? A . n A 1 7 THR 7 3 ? ? ? A . n A 1 8 ALA 8 4 ? ? ? A . n A 1 9 PRO 9 5 ? ? ? A . n A 1 10 TYR 10 6 ? ? ? A . n A 1 11 ASN 11 7 7 ASN ASN A . n A 1 12 TYR 12 8 8 TYR TYR A . n A 1 13 SER 13 9 9 SER SER A . n A 1 14 TYR 14 10 10 TYR ALA A . n A 1 15 ILE 15 11 11 ILE ILE A . n A 1 16 PHE 16 12 12 PHE PHE A . n A 1 17 LYS 17 13 13 LYS LYS A . n A 1 18 TYR 18 14 14 TYR TYR A . n A 1 19 ILE 19 15 15 ILE ILE A . n A 1 20 ILE 20 16 16 ILE ILE A . n A 1 21 ILE 21 17 17 ILE ILE A . n A 1 22 GLY 22 18 18 GLY GLY A . n A 1 23 ASP 23 19 19 ASP ASP A . n A 1 24 MET 24 20 20 MET MET A . n A 1 25 GLY 25 21 21 GLY GLY A . n A 1 26 VAL 26 22 22 VAL VAL A . n A 1 27 GLY 27 23 23 GLY GLY A . n A 1 28 LYS 28 24 24 LYS LYS A . n A 1 29 SER 29 25 25 SER SER A . n A 1 30 CYS 30 26 26 CYS CYS A . n A 1 31 LEU 31 27 27 LEU LEU A . n A 1 32 LEU 32 28 28 LEU LEU A . n A 1 33 HIS 33 29 29 HIS HIS A . n A 1 34 GLN 34 30 30 GLN GLN A . n A 1 35 PHE 35 31 31 PHE PHE A . n A 1 36 THR 36 32 32 THR THR A . n A 1 37 GLU 37 33 33 GLU ALA A . n A 1 38 LYS 38 34 34 LYS ALA A . n A 1 39 LYS 39 35 35 LYS ALA A . n A 1 40 PHE 40 36 36 PHE PHE A . n A 1 41 MET 41 37 37 MET MET A . n A 1 42 ALA 42 38 38 ALA ALA A . n A 1 43 ASP 43 39 39 ASP ALA A . n A 1 44 CYS 44 40 40 CYS CYS A . n A 1 45 PRO 45 41 41 PRO PRO A . n A 1 46 HIS 46 42 42 HIS HIS A . n A 1 47 THR 47 43 43 THR THR A . n A 1 48 ILE 48 44 44 ILE ILE A . n A 1 49 GLY 49 45 45 GLY GLY A . n A 1 50 VAL 50 46 46 VAL VAL A . n A 1 51 GLU 51 47 47 GLU GLU A . n A 1 52 PHE 52 48 48 PHE PHE A . n A 1 53 GLY 53 49 49 GLY GLY A . n A 1 54 THR 54 50 50 THR THR A . n A 1 55 ARG 55 51 51 ARG ARG A . n A 1 56 ILE 56 52 52 ILE ILE A . n A 1 57 ILE 57 53 53 ILE ILE A . n A 1 58 GLU 58 54 54 GLU ALA A . n A 1 59 VAL 59 55 55 VAL VAL A . n A 1 60 SER 60 56 56 SER SER A . n A 1 61 GLY 61 57 57 GLY GLY A . n A 1 62 GLN 62 58 58 GLN ALA A . n A 1 63 LYS 63 59 59 LYS ALA A . n A 1 64 ILE 64 60 60 ILE ILE A . n A 1 65 LYS 65 61 61 LYS LYS A . n A 1 66 LEU 66 62 62 LEU LEU A . n A 1 67 GLN 67 63 63 GLN GLN A . n A 1 68 ILE 68 64 64 ILE ILE A . n A 1 69 TRP 69 65 65 TRP TRP A . n A 1 70 ASP 70 66 66 ASP ASP A . n A 1 71 THR 71 67 67 THR THR A . n A 1 72 ALA 72 68 68 ALA ALA A . n A 1 73 GLY 73 69 69 GLY GLY A . n A 1 74 GLN 74 70 70 GLN GLN A . n A 1 75 GLU 75 71 71 GLU ALA A . n A 1 76 ARG 76 72 72 ARG ALA A . n A 1 77 PHE 77 73 73 PHE ALA A . n A 1 78 ARG 78 74 74 ARG ALA A . n A 1 79 ALA 79 75 75 ALA ALA A . n A 1 80 VAL 80 76 76 VAL VAL A . n A 1 81 THR 81 77 77 THR THR A . n A 1 82 ARG 82 78 78 ARG ARG A . n A 1 83 SER 83 79 79 SER SER A . n A 1 84 TYR 84 80 80 TYR TYR A . n A 1 85 TYR 85 81 81 TYR TYR A . n A 1 86 ARG 86 82 82 ARG ARG A . n A 1 87 GLY 87 83 83 GLY GLY A . n A 1 88 ALA 88 84 84 ALA ALA A . n A 1 89 ALA 89 85 85 ALA ALA A . n A 1 90 GLY 90 86 86 GLY GLY A . n A 1 91 ALA 91 87 87 ALA ALA A . n A 1 92 LEU 92 88 88 LEU LEU A . n A 1 93 MET 93 89 89 MET MET A . n A 1 94 VAL 94 90 90 VAL VAL A . n A 1 95 TYR 95 91 91 TYR TYR A . n A 1 96 ASP 96 92 92 ASP ASP A . n A 1 97 ILE 97 93 93 ILE ILE A . n A 1 98 THR 98 94 94 THR THR A . n A 1 99 ARG 99 95 95 ARG ARG A . n A 1 100 ARG 100 96 96 ARG ARG A . n A 1 101 SER 101 97 97 SER SER A . n A 1 102 THR 102 98 98 THR THR A . n A 1 103 TYR 103 99 99 TYR TYR A . n A 1 104 ASN 104 100 100 ASN ASN A . n A 1 105 HIS 105 101 101 HIS HIS A . n A 1 106 LEU 106 102 102 LEU LEU A . n A 1 107 SER 107 103 103 SER SER A . n A 1 108 SER 108 104 104 SER ALA A . n A 1 109 TRP 109 105 105 TRP TRP A . n A 1 110 LEU 110 106 106 LEU LEU A . n A 1 111 THR 111 107 107 THR THR A . n A 1 112 ASP 112 108 108 ASP ASP A . n A 1 113 ALA 113 109 109 ALA ALA A . n A 1 114 ARG 114 110 110 ARG ARG A . n A 1 115 ASN 115 111 111 ASN ASN A . n A 1 116 LEU 116 112 112 LEU LEU A . n A 1 117 THR 117 113 113 THR THR A . n A 1 118 ASN 118 114 114 ASN ASN A . n A 1 119 PRO 119 115 115 PRO PRO A . n A 1 120 ASN 120 116 116 ASN ASN A . n A 1 121 THR 121 117 117 THR THR A . n A 1 122 VAL 122 118 118 VAL VAL A . n A 1 123 ILE 123 119 119 ILE ILE A . n A 1 124 ILE 124 120 120 ILE ILE A . n A 1 125 LEU 125 121 121 LEU LEU A . n A 1 126 ILE 126 122 122 ILE ILE A . n A 1 127 GLY 127 123 123 GLY GLY A . n A 1 128 ASN 128 124 124 ASN ASN A . n A 1 129 LYS 129 125 125 LYS LYS A . n A 1 130 ALA 130 126 126 ALA ALA A . n A 1 131 ASP 131 127 127 ASP ASP A . n A 1 132 LEU 132 128 128 LEU LEU A . n A 1 133 GLU 133 129 129 GLU GLU A . n A 1 134 ALA 134 130 130 ALA ALA A . n A 1 135 GLN 135 131 131 GLN GLN A . n A 1 136 ARG 136 132 132 ARG ARG A . n A 1 137 ASP 137 133 133 ASP ASP A . n A 1 138 VAL 138 134 134 VAL VAL A . n A 1 139 THR 139 135 135 THR THR A . n A 1 140 TYR 140 136 136 TYR TYR A . n A 1 141 GLU 141 137 137 GLU GLU A . n A 1 142 GLU 142 138 138 GLU GLU A . n A 1 143 ALA 143 139 139 ALA ALA A . n A 1 144 LYS 144 140 140 LYS ALA A . n A 1 145 GLN 145 141 141 GLN ALA A . n A 1 146 PHE 146 142 142 PHE PHE A . n A 1 147 ALA 147 143 143 ALA ALA A . n A 1 148 GLU 148 144 144 GLU ALA A . n A 1 149 GLU 149 145 145 GLU GLU A . n A 1 150 ASN 150 146 146 ASN ASN A . n A 1 151 GLY 151 147 147 GLY GLY A . n A 1 152 LEU 152 148 148 LEU LEU A . n A 1 153 LEU 153 149 149 LEU LEU A . n A 1 154 PHE 154 150 150 PHE PHE A . n A 1 155 LEU 155 151 151 LEU LEU A . n A 1 156 GLU 156 152 152 GLU GLU A . n A 1 157 ALA 157 153 153 ALA ALA A . n A 1 158 SER 158 154 154 SER SER A . n A 1 159 ALA 159 155 155 ALA ALA A . n A 1 160 LYS 160 156 156 LYS LYS A . n A 1 161 THR 161 157 157 THR THR A . n A 1 162 GLY 162 158 158 GLY GLY A . n A 1 163 GLU 163 159 159 GLU GLU A . n A 1 164 ASN 164 160 160 ASN ASN A . n A 1 165 VAL 165 161 161 VAL VAL A . n A 1 166 GLU 166 162 162 GLU GLU A . n A 1 167 ASP 167 163 163 ASP ASP A . n A 1 168 ALA 168 164 164 ALA ALA A . n A 1 169 PHE 169 165 165 PHE PHE A . n A 1 170 LEU 170 166 166 LEU ALA A . n A 1 171 GLU 171 167 167 GLU GLU A . n A 1 172 ALA 172 168 168 ALA ALA A . n A 1 173 ALA 173 169 169 ALA ALA A . n A 1 174 LYS 174 170 170 LYS ALA A . n A 1 175 LYS 175 171 171 LYS ALA A . n A 1 176 ILE 176 172 172 ILE ILE A . n A 1 177 TYR 177 173 173 TYR ALA A . n A 1 178 GLN 178 174 ? ? ? A . n A 1 179 ASN 179 175 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 201 MG MG A . C 3 GDP 1 200 200 GDP GDP A . D 4 HOH 1 202 1 HOH HOH A . D 4 HOH 2 203 2 HOH HOH A . D 4 HOH 3 204 3 HOH HOH A . D 4 HOH 4 205 4 HOH HOH A . D 4 HOH 5 206 5 HOH HOH A . D 4 HOH 6 207 6 HOH HOH A . D 4 HOH 7 208 7 HOH HOH A . D 4 HOH 8 209 8 HOH HOH A . D 4 HOH 9 210 9 HOH HOH A . D 4 HOH 10 211 10 HOH HOH A . D 4 HOH 11 212 12 HOH HOH A . D 4 HOH 12 213 13 HOH HOH A . D 4 HOH 13 214 14 HOH HOH A . D 4 HOH 14 215 15 HOH HOH A . D 4 HOH 15 216 16 HOH HOH A . D 4 HOH 16 217 17 HOH HOH A . D 4 HOH 17 218 18 HOH HOH A . D 4 HOH 18 219 19 HOH HOH A . D 4 HOH 19 220 20 HOH HOH A . D 4 HOH 20 221 21 HOH HOH A . D 4 HOH 21 222 23 HOH HOH A . D 4 HOH 22 223 24 HOH HOH A . D 4 HOH 23 224 27 HOH HOH A . D 4 HOH 24 225 28 HOH HOH A . D 4 HOH 25 226 29 HOH HOH A . D 4 HOH 26 227 30 HOH HOH A . D 4 HOH 27 228 31 HOH HOH A . D 4 HOH 28 229 32 HOH HOH A . D 4 HOH 29 230 34 HOH HOH A . D 4 HOH 30 231 36 HOH HOH A . D 4 HOH 31 232 39 HOH HOH A . D 4 HOH 32 233 40 HOH HOH A . D 4 HOH 33 234 41 HOH HOH A . D 4 HOH 34 235 42 HOH HOH A . D 4 HOH 35 236 43 HOH HOH A . D 4 HOH 36 237 44 HOH HOH A . D 4 HOH 37 238 45 HOH HOH A . D 4 HOH 38 239 46 HOH HOH A . D 4 HOH 39 240 48 HOH HOH A . D 4 HOH 40 241 49 HOH HOH A . D 4 HOH 41 242 50 HOH HOH A . D 4 HOH 42 243 51 HOH HOH A . D 4 HOH 43 244 53 HOH HOH A . D 4 HOH 44 245 54 HOH HOH A . D 4 HOH 45 246 56 HOH HOH A . D 4 HOH 46 247 57 HOH HOH A . D 4 HOH 47 248 58 HOH HOH A . D 4 HOH 48 249 61 HOH HOH A . D 4 HOH 49 250 62 HOH HOH A . D 4 HOH 50 251 63 HOH HOH A . D 4 HOH 51 252 64 HOH HOH A . D 4 HOH 52 253 65 HOH HOH A . D 4 HOH 53 254 66 HOH HOH A . D 4 HOH 54 255 67 HOH HOH A . D 4 HOH 55 256 68 HOH HOH A . D 4 HOH 56 257 69 HOH HOH A . D 4 HOH 57 258 70 HOH HOH A . D 4 HOH 58 259 71 HOH HOH A . D 4 HOH 59 260 73 HOH HOH A . D 4 HOH 60 261 74 HOH HOH A . D 4 HOH 61 262 75 HOH HOH A . D 4 HOH 62 263 76 HOH HOH A . D 4 HOH 63 264 77 HOH HOH A . D 4 HOH 64 265 80 HOH HOH A . D 4 HOH 65 266 81 HOH HOH A . D 4 HOH 66 267 84 HOH HOH A . D 4 HOH 67 268 85 HOH HOH A . D 4 HOH 68 269 87 HOH HOH A . D 4 HOH 69 270 89 HOH HOH A . D 4 HOH 70 271 90 HOH HOH A . D 4 HOH 71 272 91 HOH HOH A . D 4 HOH 72 273 92 HOH HOH A . D 4 HOH 73 274 93 HOH HOH A . D 4 HOH 74 275 94 HOH HOH A . D 4 HOH 75 276 98 HOH HOH A . D 4 HOH 76 277 99 HOH HOH A . D 4 HOH 77 278 100 HOH HOH A . D 4 HOH 78 279 101 HOH HOH A . D 4 HOH 79 280 102 HOH HOH A . D 4 HOH 80 281 105 HOH HOH A . D 4 HOH 81 282 106 HOH HOH A . D 4 HOH 82 283 108 HOH HOH A . D 4 HOH 83 284 109 HOH HOH A . D 4 HOH 84 285 111 HOH HOH A . D 4 HOH 85 286 112 HOH HOH A . D 4 HOH 86 287 113 HOH HOH A . D 4 HOH 87 288 114 HOH HOH A . D 4 HOH 88 289 115 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 10 ? CG ? A TYR 14 CG 2 1 Y 1 A TYR 10 ? CD1 ? A TYR 14 CD1 3 1 Y 1 A TYR 10 ? CD2 ? A TYR 14 CD2 4 1 Y 1 A TYR 10 ? CE1 ? A TYR 14 CE1 5 1 Y 1 A TYR 10 ? CE2 ? A TYR 14 CE2 6 1 Y 1 A TYR 10 ? CZ ? A TYR 14 CZ 7 1 Y 1 A TYR 10 ? OH ? A TYR 14 OH 8 1 Y 1 A GLU 33 ? CG ? A GLU 37 CG 9 1 Y 1 A GLU 33 ? CD ? A GLU 37 CD 10 1 Y 1 A GLU 33 ? OE1 ? A GLU 37 OE1 11 1 Y 1 A GLU 33 ? OE2 ? A GLU 37 OE2 12 1 Y 1 A LYS 34 ? CG ? A LYS 38 CG 13 1 Y 1 A LYS 34 ? CD ? A LYS 38 CD 14 1 Y 1 A LYS 34 ? CE ? A LYS 38 CE 15 1 Y 1 A LYS 34 ? NZ ? A LYS 38 NZ 16 1 Y 1 A LYS 35 ? CG ? A LYS 39 CG 17 1 Y 1 A LYS 35 ? CD ? A LYS 39 CD 18 1 Y 1 A LYS 35 ? CE ? A LYS 39 CE 19 1 Y 1 A LYS 35 ? NZ ? A LYS 39 NZ 20 1 Y 1 A ASP 39 ? CG ? A ASP 43 CG 21 1 Y 1 A ASP 39 ? OD1 ? A ASP 43 OD1 22 1 Y 1 A ASP 39 ? OD2 ? A ASP 43 OD2 23 1 Y 1 A GLU 54 ? CG ? A GLU 58 CG 24 1 Y 1 A GLU 54 ? CD ? A GLU 58 CD 25 1 Y 1 A GLU 54 ? OE1 ? A GLU 58 OE1 26 1 Y 1 A GLU 54 ? OE2 ? A GLU 58 OE2 27 1 Y 1 A GLN 58 ? CG ? A GLN 62 CG 28 1 Y 1 A GLN 58 ? CD ? A GLN 62 CD 29 1 Y 1 A GLN 58 ? OE1 ? A GLN 62 OE1 30 1 Y 1 A GLN 58 ? NE2 ? A GLN 62 NE2 31 1 Y 1 A LYS 59 ? CG ? A LYS 63 CG 32 1 Y 1 A LYS 59 ? CD ? A LYS 63 CD 33 1 Y 1 A LYS 59 ? CE ? A LYS 63 CE 34 1 Y 1 A LYS 59 ? NZ ? A LYS 63 NZ 35 1 Y 1 A GLU 71 ? CG ? A GLU 75 CG 36 1 Y 1 A GLU 71 ? CD ? A GLU 75 CD 37 1 Y 1 A GLU 71 ? OE1 ? A GLU 75 OE1 38 1 Y 1 A GLU 71 ? OE2 ? A GLU 75 OE2 39 1 Y 1 A ARG 72 ? CG ? A ARG 76 CG 40 1 Y 1 A ARG 72 ? CD ? A ARG 76 CD 41 1 Y 1 A ARG 72 ? NE ? A ARG 76 NE 42 1 Y 1 A ARG 72 ? CZ ? A ARG 76 CZ 43 1 Y 1 A ARG 72 ? NH1 ? A ARG 76 NH1 44 1 Y 1 A ARG 72 ? NH2 ? A ARG 76 NH2 45 1 Y 1 A PHE 73 ? CG ? A PHE 77 CG 46 1 Y 1 A PHE 73 ? CD1 ? A PHE 77 CD1 47 1 Y 1 A PHE 73 ? CD2 ? A PHE 77 CD2 48 1 Y 1 A PHE 73 ? CE1 ? A PHE 77 CE1 49 1 Y 1 A PHE 73 ? CE2 ? A PHE 77 CE2 50 1 Y 1 A PHE 73 ? CZ ? A PHE 77 CZ 51 1 Y 1 A ARG 74 ? CG ? A ARG 78 CG 52 1 Y 1 A ARG 74 ? CD ? A ARG 78 CD 53 1 Y 1 A ARG 74 ? NE ? A ARG 78 NE 54 1 Y 1 A ARG 74 ? CZ ? A ARG 78 CZ 55 1 Y 1 A ARG 74 ? NH1 ? A ARG 78 NH1 56 1 Y 1 A ARG 74 ? NH2 ? A ARG 78 NH2 57 1 Y 1 A SER 104 ? OG ? A SER 108 OG 58 1 Y 1 A LYS 140 ? CG ? A LYS 144 CG 59 1 Y 1 A LYS 140 ? CD ? A LYS 144 CD 60 1 Y 1 A LYS 140 ? CE ? A LYS 144 CE 61 1 Y 1 A LYS 140 ? NZ ? A LYS 144 NZ 62 1 Y 1 A GLN 141 ? CG ? A GLN 145 CG 63 1 Y 1 A GLN 141 ? CD ? A GLN 145 CD 64 1 Y 1 A GLN 141 ? OE1 ? A GLN 145 OE1 65 1 Y 1 A GLN 141 ? NE2 ? A GLN 145 NE2 66 1 Y 1 A GLU 144 ? CG ? A GLU 148 CG 67 1 Y 1 A GLU 144 ? CD ? A GLU 148 CD 68 1 Y 1 A GLU 144 ? OE1 ? A GLU 148 OE1 69 1 Y 1 A GLU 144 ? OE2 ? A GLU 148 OE2 70 1 Y 1 A LEU 166 ? CG ? A LEU 170 CG 71 1 Y 1 A LEU 166 ? CD1 ? A LEU 170 CD1 72 1 Y 1 A LEU 166 ? CD2 ? A LEU 170 CD2 73 1 Y 1 A LYS 170 ? CG ? A LYS 174 CG 74 1 Y 1 A LYS 170 ? CD ? A LYS 174 CD 75 1 Y 1 A LYS 170 ? CE ? A LYS 174 CE 76 1 Y 1 A LYS 170 ? NZ ? A LYS 174 NZ 77 1 Y 1 A LYS 171 ? CG ? A LYS 175 CG 78 1 Y 1 A LYS 171 ? CD ? A LYS 175 CD 79 1 Y 1 A LYS 171 ? CE ? A LYS 175 CE 80 1 Y 1 A LYS 171 ? NZ ? A LYS 175 NZ 81 1 Y 1 A TYR 173 ? CG ? A TYR 177 CG 82 1 Y 1 A TYR 173 ? CD1 ? A TYR 177 CD1 83 1 Y 1 A TYR 173 ? CD2 ? A TYR 177 CD2 84 1 Y 1 A TYR 173 ? CE1 ? A TYR 177 CE1 85 1 Y 1 A TYR 173 ? CE2 ? A TYR 177 CE2 86 1 Y 1 A TYR 173 ? CZ ? A TYR 177 CZ 87 1 Y 1 A TYR 173 ? OH ? A TYR 177 OH # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _cell.entry_id 1Z0F _cell.length_a 43.065 _cell.length_b 40.780 _cell.length_c 47.678 _cell.angle_alpha 90.00 _cell.angle_beta 108.45 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z0F _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1Z0F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_percent_sol 44.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '7% PEG 6000, 100mM Calcium Chloride, 50mM HEPES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 2004-03-22 _diffrn_detector.details 'Osmic mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1Z0F _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 8450 _reflns.percent_possible_obs 97.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.122 _reflns.pdbx_netI_over_sigmaI 16.1 _reflns.B_iso_Wilson_estimate 36.1 _reflns.pdbx_redundancy 4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.21 _reflns_shell.percent_possible_all 84.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.386 _reflns_shell.meanI_over_sigI_obs 3.6 _reflns_shell.pdbx_redundancy 4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 596 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1Z0F _refine.ls_number_reflns_obs 7998 _refine.ls_number_reflns_all 8469 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 12.00 _refine.ls_d_res_high 2.15 _refine.ls_percent_reflns_obs 97.38 _refine.ls_R_factor_obs 0.20953 _refine.ls_R_factor_all 0.225 _refine.ls_R_factor_R_work 0.20737 _refine.ls_R_factor_R_free 0.2572 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 401 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.906 _refine.B_iso_mean 28.305 _refine.aniso_B[1][1] -1.33 _refine.aniso_B[2][2] -0.82 _refine.aniso_B[3][3] 3.13 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 1.55 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'Polyalanine Rab4A' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.335 _refine.pdbx_overall_ESU_R_Free 0.234 _refine.overall_SU_ML 0.160 _refine.overall_SU_B 6.357 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1246 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 88 _refine_hist.number_atoms_total 1363 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 12.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 1298 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.175 1.957 ? 1770 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.337 5.000 ? 166 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.713 23.889 ? 54 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.652 15.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.745 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.071 0.200 ? 204 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 974 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.188 0.200 ? 524 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.294 0.200 ? 880 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.142 0.200 ? 79 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.109 0.200 ? 27 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.160 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.442 1.500 ? 856 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.755 2.000 ? 1301 'X-RAY DIFFRACTION' ? r_scbond_it 0.797 3.000 ? 534 'X-RAY DIFFRACTION' ? r_scangle_it 1.259 4.500 ? 469 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.150 _refine_ls_shell.d_res_low 2.204 _refine_ls_shell.number_reflns_R_work 459 _refine_ls_shell.R_factor_R_work 0.277 _refine_ls_shell.percent_reflns_obs 82.82 _refine_ls_shell.R_factor_R_free 0.333 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1Z0F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1Z0F _struct.title 'GDP-Bound Rab14 GTPase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Z0F _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'Rab GTPase, Rab14, Vesicular trafficking, Protein transport' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RAB14_HUMAN _struct_ref.pdbx_db_accession P61106 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYY RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENV EDAFLEAAKKIYQN ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Z0F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 179 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P61106 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 175 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 175 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Z0F GLY A 1 ? UNP P61106 ? ? 'cloning artifact' -3 1 1 1Z0F PRO A 2 ? UNP P61106 ? ? 'cloning artifact' -2 2 1 1Z0F LEU A 3 ? UNP P61106 ? ? 'cloning artifact' -1 3 1 1Z0F GLY A 4 ? UNP P61106 ? ? 'cloning artifact' 0 4 1 1Z0F SER A 5 ? UNP P61106 ? ? 'cloning artifact' 1 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 27 ? LYS A 38 ? GLY A 23 LYS A 34 1 ? 12 HELX_P HELX_P2 2 GLY A 73 ? PHE A 77 ? GLY A 69 PHE A 73 5 ? 5 HELX_P HELX_P3 3 ARG A 78 ? GLY A 87 ? ARG A 74 GLY A 83 1 ? 10 HELX_P HELX_P4 4 ARG A 99 ? HIS A 105 ? ARG A 95 HIS A 101 1 ? 7 HELX_P HELX_P5 5 HIS A 105 ? THR A 117 ? HIS A 101 THR A 113 1 ? 13 HELX_P HELX_P6 6 LEU A 132 ? ARG A 136 ? LEU A 128 ARG A 132 5 ? 5 HELX_P HELX_P7 7 THR A 139 ? ASN A 150 ? THR A 135 ASN A 146 1 ? 12 HELX_P HELX_P8 8 ASN A 164 ? TYR A 177 ? ASN A 160 TYR A 173 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 29 OG ? ? ? 1_555 B MG . MG ? ? A SER 25 A MG 201 1_555 ? ? ? ? ? ? ? 2.490 ? ? metalc2 metalc ? ? A ASP 70 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 66 A MG 201 1_555 ? ? ? ? ? ? ? 2.356 ? ? metalc3 metalc ? ? C GDP . O2B ? ? ? 1_555 B MG . MG ? ? A GDP 200 A MG 201 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 205 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 240 1_555 ? ? ? ? ? ? ? 2.241 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 247 1_555 ? ? ? ? ? ? ? 2.545 ? ? metalc7 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 201 A HOH 257 1_555 ? ? ? ? ? ? ? 2.880 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 29 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OD2 ? A ASP 70 ? A ASP 66 ? 1_555 78.7 ? 2 OG ? A SER 29 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O2B ? C GDP . ? A GDP 200 ? 1_555 82.6 ? 3 OD2 ? A ASP 70 ? A ASP 66 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O2B ? C GDP . ? A GDP 200 ? 1_555 99.2 ? 4 OG ? A SER 29 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 205 ? 1_555 80.1 ? 5 OD2 ? A ASP 70 ? A ASP 66 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 205 ? 1_555 157.9 ? 6 O2B ? C GDP . ? A GDP 200 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 205 ? 1_555 84.5 ? 7 OG ? A SER 29 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 240 ? 1_555 83.1 ? 8 OD2 ? A ASP 70 ? A ASP 66 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 240 ? 1_555 86.6 ? 9 O2B ? C GDP . ? A GDP 200 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 240 ? 1_555 163.2 ? 10 O ? D HOH . ? A HOH 205 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 240 ? 1_555 84.5 ? 11 OG ? A SER 29 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 247 ? 1_555 143.5 ? 12 OD2 ? A ASP 70 ? A ASP 66 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 247 ? 1_555 127.1 ? 13 O2B ? C GDP . ? A GDP 200 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 247 ? 1_555 113.1 ? 14 O ? D HOH . ? A HOH 205 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 247 ? 1_555 69.5 ? 15 O ? D HOH . ? A HOH 240 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 247 ? 1_555 74.5 ? 16 OG ? A SER 29 ? A SER 25 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 257 ? 1_555 155.1 ? 17 OD2 ? A ASP 70 ? A ASP 66 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 257 ? 1_555 76.4 ? 18 O2B ? C GDP . ? A GDP 200 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 257 ? 1_555 103.0 ? 19 O ? D HOH . ? A HOH 205 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 257 ? 1_555 124.3 ? 20 O ? D HOH . ? A HOH 240 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 257 ? 1_555 93.6 ? 21 O ? D HOH . ? A HOH 247 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 257 ? 1_555 56.6 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 52 ? VAL A 59 ? PHE A 48 VAL A 55 A 2 GLN A 62 ? ASP A 70 ? GLN A 58 ASP A 66 A 3 TYR A 14 ? ILE A 21 ? TYR A 10 ILE A 17 A 4 GLY A 90 ? ASP A 96 ? GLY A 86 ASP A 92 A 5 VAL A 122 ? ASN A 128 ? VAL A 118 ASN A 124 A 6 LEU A 153 ? GLU A 156 ? LEU A 149 GLU A 152 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 55 ? N ARG A 51 O LEU A 66 ? O LEU A 62 A 2 3 O GLN A 67 ? O GLN A 63 N TYR A 18 ? N TYR A 14 A 3 4 N ILE A 21 ? N ILE A 17 O VAL A 94 ? O VAL A 90 A 4 5 N ALA A 91 ? N ALA A 87 O ILE A 124 ? O ILE A 120 A 5 6 N LEU A 125 ? N LEU A 121 O LEU A 153 ? O LEU A 149 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 201 ? 7 'BINDING SITE FOR RESIDUE MG A 201' AC2 Software A GDP 200 ? 20 'BINDING SITE FOR RESIDUE GDP A 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 SER A 29 ? SER A 25 . ? 1_555 ? 2 AC1 7 ASP A 70 ? ASP A 66 . ? 1_555 ? 3 AC1 7 GDP C . ? GDP A 200 . ? 1_555 ? 4 AC1 7 HOH D . ? HOH A 205 . ? 1_555 ? 5 AC1 7 HOH D . ? HOH A 240 . ? 1_555 ? 6 AC1 7 HOH D . ? HOH A 247 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 257 . ? 1_555 ? 8 AC2 20 GLY A 25 ? GLY A 21 . ? 1_555 ? 9 AC2 20 VAL A 26 ? VAL A 22 . ? 1_555 ? 10 AC2 20 GLY A 27 ? GLY A 23 . ? 1_555 ? 11 AC2 20 LYS A 28 ? LYS A 24 . ? 1_555 ? 12 AC2 20 SER A 29 ? SER A 25 . ? 1_555 ? 13 AC2 20 CYS A 30 ? CYS A 26 . ? 1_555 ? 14 AC2 20 PHE A 40 ? PHE A 36 . ? 1_555 ? 15 AC2 20 ASP A 70 ? ASP A 66 . ? 1_555 ? 16 AC2 20 ASN A 128 ? ASN A 124 . ? 1_555 ? 17 AC2 20 LYS A 129 ? LYS A 125 . ? 1_555 ? 18 AC2 20 ASP A 131 ? ASP A 127 . ? 1_555 ? 19 AC2 20 LEU A 132 ? LEU A 128 . ? 1_555 ? 20 AC2 20 SER A 158 ? SER A 154 . ? 1_555 ? 21 AC2 20 ALA A 159 ? ALA A 155 . ? 1_555 ? 22 AC2 20 LYS A 160 ? LYS A 156 . ? 1_555 ? 23 AC2 20 MG B . ? MG A 201 . ? 1_555 ? 24 AC2 20 HOH D . ? HOH A 205 . ? 1_555 ? 25 AC2 20 HOH D . ? HOH A 252 . ? 1_555 ? 26 AC2 20 HOH D . ? HOH A 253 . ? 1_555 ? 27 AC2 20 HOH D . ? HOH A 268 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 37 ? ? -64.22 -76.11 2 1 ALA A 38 ? ? 67.78 -22.05 3 1 THR A 113 ? ? -105.05 -138.76 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A LEU -1 ? A LEU 3 4 1 Y 1 A GLY 0 ? A GLY 4 5 1 Y 1 A SER 1 ? A SER 5 6 1 Y 1 A ALA 2 ? A ALA 6 7 1 Y 1 A THR 3 ? A THR 7 8 1 Y 1 A ALA 4 ? A ALA 8 9 1 Y 1 A PRO 5 ? A PRO 9 10 1 Y 1 A TYR 6 ? A TYR 10 11 1 Y 1 A GLN 174 ? A GLN 178 12 1 Y 1 A ASN 175 ? A ASN 179 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GDP PB P N N 88 GDP O1B O N N 89 GDP O2B O N N 90 GDP O3B O N N 91 GDP O3A O N N 92 GDP PA P N N 93 GDP O1A O N N 94 GDP O2A O N N 95 GDP "O5'" O N N 96 GDP "C5'" C N N 97 GDP "C4'" C N R 98 GDP "O4'" O N N 99 GDP "C3'" C N S 100 GDP "O3'" O N N 101 GDP "C2'" C N R 102 GDP "O2'" O N N 103 GDP "C1'" C N R 104 GDP N9 N Y N 105 GDP C8 C Y N 106 GDP N7 N Y N 107 GDP C5 C Y N 108 GDP C6 C N N 109 GDP O6 O N N 110 GDP N1 N N N 111 GDP C2 C N N 112 GDP N2 N N N 113 GDP N3 N N N 114 GDP C4 C Y N 115 GDP HOB2 H N N 116 GDP HOB3 H N N 117 GDP HOA2 H N N 118 GDP "H5'" H N N 119 GDP "H5''" H N N 120 GDP "H4'" H N N 121 GDP "H3'" H N N 122 GDP "HO3'" H N N 123 GDP "H2'" H N N 124 GDP "HO2'" H N N 125 GDP "H1'" H N N 126 GDP H8 H N N 127 GDP HN1 H N N 128 GDP HN21 H N N 129 GDP HN22 H N N 130 GLN N N N N 131 GLN CA C N S 132 GLN C C N N 133 GLN O O N N 134 GLN CB C N N 135 GLN CG C N N 136 GLN CD C N N 137 GLN OE1 O N N 138 GLN NE2 N N N 139 GLN OXT O N N 140 GLN H H N N 141 GLN H2 H N N 142 GLN HA H N N 143 GLN HB2 H N N 144 GLN HB3 H N N 145 GLN HG2 H N N 146 GLN HG3 H N N 147 GLN HE21 H N N 148 GLN HE22 H N N 149 GLN HXT H N N 150 GLU N N N N 151 GLU CA C N S 152 GLU C C N N 153 GLU O O N N 154 GLU CB C N N 155 GLU CG C N N 156 GLU CD C N N 157 GLU OE1 O N N 158 GLU OE2 O N N 159 GLU OXT O N N 160 GLU H H N N 161 GLU H2 H N N 162 GLU HA H N N 163 GLU HB2 H N N 164 GLU HB3 H N N 165 GLU HG2 H N N 166 GLU HG3 H N N 167 GLU HE2 H N N 168 GLU HXT H N N 169 GLY N N N N 170 GLY CA C N N 171 GLY C C N N 172 GLY O O N N 173 GLY OXT O N N 174 GLY H H N N 175 GLY H2 H N N 176 GLY HA2 H N N 177 GLY HA3 H N N 178 GLY HXT H N N 179 HIS N N N N 180 HIS CA C N S 181 HIS C C N N 182 HIS O O N N 183 HIS CB C N N 184 HIS CG C Y N 185 HIS ND1 N Y N 186 HIS CD2 C Y N 187 HIS CE1 C Y N 188 HIS NE2 N Y N 189 HIS OXT O N N 190 HIS H H N N 191 HIS H2 H N N 192 HIS HA H N N 193 HIS HB2 H N N 194 HIS HB3 H N N 195 HIS HD1 H N N 196 HIS HD2 H N N 197 HIS HE1 H N N 198 HIS HE2 H N N 199 HIS HXT H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 ILE N N N N 204 ILE CA C N S 205 ILE C C N N 206 ILE O O N N 207 ILE CB C N S 208 ILE CG1 C N N 209 ILE CG2 C N N 210 ILE CD1 C N N 211 ILE OXT O N N 212 ILE H H N N 213 ILE H2 H N N 214 ILE HA H N N 215 ILE HB H N N 216 ILE HG12 H N N 217 ILE HG13 H N N 218 ILE HG21 H N N 219 ILE HG22 H N N 220 ILE HG23 H N N 221 ILE HD11 H N N 222 ILE HD12 H N N 223 ILE HD13 H N N 224 ILE HXT H N N 225 LEU N N N N 226 LEU CA C N S 227 LEU C C N N 228 LEU O O N N 229 LEU CB C N N 230 LEU CG C N N 231 LEU CD1 C N N 232 LEU CD2 C N N 233 LEU OXT O N N 234 LEU H H N N 235 LEU H2 H N N 236 LEU HA H N N 237 LEU HB2 H N N 238 LEU HB3 H N N 239 LEU HG H N N 240 LEU HD11 H N N 241 LEU HD12 H N N 242 LEU HD13 H N N 243 LEU HD21 H N N 244 LEU HD22 H N N 245 LEU HD23 H N N 246 LEU HXT H N N 247 LYS N N N N 248 LYS CA C N S 249 LYS C C N N 250 LYS O O N N 251 LYS CB C N N 252 LYS CG C N N 253 LYS CD C N N 254 LYS CE C N N 255 LYS NZ N N N 256 LYS OXT O N N 257 LYS H H N N 258 LYS H2 H N N 259 LYS HA H N N 260 LYS HB2 H N N 261 LYS HB3 H N N 262 LYS HG2 H N N 263 LYS HG3 H N N 264 LYS HD2 H N N 265 LYS HD3 H N N 266 LYS HE2 H N N 267 LYS HE3 H N N 268 LYS HZ1 H N N 269 LYS HZ2 H N N 270 LYS HZ3 H N N 271 LYS HXT H N N 272 MET N N N N 273 MET CA C N S 274 MET C C N N 275 MET O O N N 276 MET CB C N N 277 MET CG C N N 278 MET SD S N N 279 MET CE C N N 280 MET OXT O N N 281 MET H H N N 282 MET H2 H N N 283 MET HA H N N 284 MET HB2 H N N 285 MET HB3 H N N 286 MET HG2 H N N 287 MET HG3 H N N 288 MET HE1 H N N 289 MET HE2 H N N 290 MET HE3 H N N 291 MET HXT H N N 292 MG MG MG N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TRP N N N N 365 TRP CA C N S 366 TRP C C N N 367 TRP O O N N 368 TRP CB C N N 369 TRP CG C Y N 370 TRP CD1 C Y N 371 TRP CD2 C Y N 372 TRP NE1 N Y N 373 TRP CE2 C Y N 374 TRP CE3 C Y N 375 TRP CZ2 C Y N 376 TRP CZ3 C Y N 377 TRP CH2 C Y N 378 TRP OXT O N N 379 TRP H H N N 380 TRP H2 H N N 381 TRP HA H N N 382 TRP HB2 H N N 383 TRP HB3 H N N 384 TRP HD1 H N N 385 TRP HE1 H N N 386 TRP HE3 H N N 387 TRP HZ2 H N N 388 TRP HZ3 H N N 389 TRP HH2 H N N 390 TRP HXT H N N 391 TYR N N N N 392 TYR CA C N S 393 TYR C C N N 394 TYR O O N N 395 TYR CB C N N 396 TYR CG C Y N 397 TYR CD1 C Y N 398 TYR CD2 C Y N 399 TYR CE1 C Y N 400 TYR CE2 C Y N 401 TYR CZ C Y N 402 TYR OH O N N 403 TYR OXT O N N 404 TYR H H N N 405 TYR H2 H N N 406 TYR HA H N N 407 TYR HB2 H N N 408 TYR HB3 H N N 409 TYR HD1 H N N 410 TYR HD2 H N N 411 TYR HE1 H N N 412 TYR HE2 H N N 413 TYR HH H N N 414 TYR HXT H N N 415 VAL N N N N 416 VAL CA C N S 417 VAL C C N N 418 VAL O O N N 419 VAL CB C N N 420 VAL CG1 C N N 421 VAL CG2 C N N 422 VAL OXT O N N 423 VAL H H N N 424 VAL H2 H N N 425 VAL HA H N N 426 VAL HB H N N 427 VAL HG11 H N N 428 VAL HG12 H N N 429 VAL HG13 H N N 430 VAL HG21 H N N 431 VAL HG22 H N N 432 VAL HG23 H N N 433 VAL HXT H N N 434 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GDP PB O1B doub N N 83 GDP PB O2B sing N N 84 GDP PB O3B sing N N 85 GDP PB O3A sing N N 86 GDP O2B HOB2 sing N N 87 GDP O3B HOB3 sing N N 88 GDP O3A PA sing N N 89 GDP PA O1A doub N N 90 GDP PA O2A sing N N 91 GDP PA "O5'" sing N N 92 GDP O2A HOA2 sing N N 93 GDP "O5'" "C5'" sing N N 94 GDP "C5'" "C4'" sing N N 95 GDP "C5'" "H5'" sing N N 96 GDP "C5'" "H5''" sing N N 97 GDP "C4'" "O4'" sing N N 98 GDP "C4'" "C3'" sing N N 99 GDP "C4'" "H4'" sing N N 100 GDP "O4'" "C1'" sing N N 101 GDP "C3'" "O3'" sing N N 102 GDP "C3'" "C2'" sing N N 103 GDP "C3'" "H3'" sing N N 104 GDP "O3'" "HO3'" sing N N 105 GDP "C2'" "O2'" sing N N 106 GDP "C2'" "C1'" sing N N 107 GDP "C2'" "H2'" sing N N 108 GDP "O2'" "HO2'" sing N N 109 GDP "C1'" N9 sing N N 110 GDP "C1'" "H1'" sing N N 111 GDP N9 C8 sing Y N 112 GDP N9 C4 sing Y N 113 GDP C8 N7 doub Y N 114 GDP C8 H8 sing N N 115 GDP N7 C5 sing Y N 116 GDP C5 C6 sing N N 117 GDP C5 C4 doub Y N 118 GDP C6 O6 doub N N 119 GDP C6 N1 sing N N 120 GDP N1 C2 sing N N 121 GDP N1 HN1 sing N N 122 GDP C2 N2 sing N N 123 GDP C2 N3 doub N N 124 GDP N2 HN21 sing N N 125 GDP N2 HN22 sing N N 126 GDP N3 C4 sing N N 127 GLN N CA sing N N 128 GLN N H sing N N 129 GLN N H2 sing N N 130 GLN CA C sing N N 131 GLN CA CB sing N N 132 GLN CA HA sing N N 133 GLN C O doub N N 134 GLN C OXT sing N N 135 GLN CB CG sing N N 136 GLN CB HB2 sing N N 137 GLN CB HB3 sing N N 138 GLN CG CD sing N N 139 GLN CG HG2 sing N N 140 GLN CG HG3 sing N N 141 GLN CD OE1 doub N N 142 GLN CD NE2 sing N N 143 GLN NE2 HE21 sing N N 144 GLN NE2 HE22 sing N N 145 GLN OXT HXT sing N N 146 GLU N CA sing N N 147 GLU N H sing N N 148 GLU N H2 sing N N 149 GLU CA C sing N N 150 GLU CA CB sing N N 151 GLU CA HA sing N N 152 GLU C O doub N N 153 GLU C OXT sing N N 154 GLU CB CG sing N N 155 GLU CB HB2 sing N N 156 GLU CB HB3 sing N N 157 GLU CG CD sing N N 158 GLU CG HG2 sing N N 159 GLU CG HG3 sing N N 160 GLU CD OE1 doub N N 161 GLU CD OE2 sing N N 162 GLU OE2 HE2 sing N N 163 GLU OXT HXT sing N N 164 GLY N CA sing N N 165 GLY N H sing N N 166 GLY N H2 sing N N 167 GLY CA C sing N N 168 GLY CA HA2 sing N N 169 GLY CA HA3 sing N N 170 GLY C O doub N N 171 GLY C OXT sing N N 172 GLY OXT HXT sing N N 173 HIS N CA sing N N 174 HIS N H sing N N 175 HIS N H2 sing N N 176 HIS CA C sing N N 177 HIS CA CB sing N N 178 HIS CA HA sing N N 179 HIS C O doub N N 180 HIS C OXT sing N N 181 HIS CB CG sing N N 182 HIS CB HB2 sing N N 183 HIS CB HB3 sing N N 184 HIS CG ND1 sing Y N 185 HIS CG CD2 doub Y N 186 HIS ND1 CE1 doub Y N 187 HIS ND1 HD1 sing N N 188 HIS CD2 NE2 sing Y N 189 HIS CD2 HD2 sing N N 190 HIS CE1 NE2 sing Y N 191 HIS CE1 HE1 sing N N 192 HIS NE2 HE2 sing N N 193 HIS OXT HXT sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 ILE N CA sing N N 197 ILE N H sing N N 198 ILE N H2 sing N N 199 ILE CA C sing N N 200 ILE CA CB sing N N 201 ILE CA HA sing N N 202 ILE C O doub N N 203 ILE C OXT sing N N 204 ILE CB CG1 sing N N 205 ILE CB CG2 sing N N 206 ILE CB HB sing N N 207 ILE CG1 CD1 sing N N 208 ILE CG1 HG12 sing N N 209 ILE CG1 HG13 sing N N 210 ILE CG2 HG21 sing N N 211 ILE CG2 HG22 sing N N 212 ILE CG2 HG23 sing N N 213 ILE CD1 HD11 sing N N 214 ILE CD1 HD12 sing N N 215 ILE CD1 HD13 sing N N 216 ILE OXT HXT sing N N 217 LEU N CA sing N N 218 LEU N H sing N N 219 LEU N H2 sing N N 220 LEU CA C sing N N 221 LEU CA CB sing N N 222 LEU CA HA sing N N 223 LEU C O doub N N 224 LEU C OXT sing N N 225 LEU CB CG sing N N 226 LEU CB HB2 sing N N 227 LEU CB HB3 sing N N 228 LEU CG CD1 sing N N 229 LEU CG CD2 sing N N 230 LEU CG HG sing N N 231 LEU CD1 HD11 sing N N 232 LEU CD1 HD12 sing N N 233 LEU CD1 HD13 sing N N 234 LEU CD2 HD21 sing N N 235 LEU CD2 HD22 sing N N 236 LEU CD2 HD23 sing N N 237 LEU OXT HXT sing N N 238 LYS N CA sing N N 239 LYS N H sing N N 240 LYS N H2 sing N N 241 LYS CA C sing N N 242 LYS CA CB sing N N 243 LYS CA HA sing N N 244 LYS C O doub N N 245 LYS C OXT sing N N 246 LYS CB CG sing N N 247 LYS CB HB2 sing N N 248 LYS CB HB3 sing N N 249 LYS CG CD sing N N 250 LYS CG HG2 sing N N 251 LYS CG HG3 sing N N 252 LYS CD CE sing N N 253 LYS CD HD2 sing N N 254 LYS CD HD3 sing N N 255 LYS CE NZ sing N N 256 LYS CE HE2 sing N N 257 LYS CE HE3 sing N N 258 LYS NZ HZ1 sing N N 259 LYS NZ HZ2 sing N N 260 LYS NZ HZ3 sing N N 261 LYS OXT HXT sing N N 262 MET N CA sing N N 263 MET N H sing N N 264 MET N H2 sing N N 265 MET CA C sing N N 266 MET CA CB sing N N 267 MET CA HA sing N N 268 MET C O doub N N 269 MET C OXT sing N N 270 MET CB CG sing N N 271 MET CB HB2 sing N N 272 MET CB HB3 sing N N 273 MET CG SD sing N N 274 MET CG HG2 sing N N 275 MET CG HG3 sing N N 276 MET SD CE sing N N 277 MET CE HE1 sing N N 278 MET CE HE2 sing N N 279 MET CE HE3 sing N N 280 MET OXT HXT sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PRO N CA sing N N 305 PRO N CD sing N N 306 PRO N H sing N N 307 PRO CA C sing N N 308 PRO CA CB sing N N 309 PRO CA HA sing N N 310 PRO C O doub N N 311 PRO C OXT sing N N 312 PRO CB CG sing N N 313 PRO CB HB2 sing N N 314 PRO CB HB3 sing N N 315 PRO CG CD sing N N 316 PRO CG HG2 sing N N 317 PRO CG HG3 sing N N 318 PRO CD HD2 sing N N 319 PRO CD HD3 sing N N 320 PRO OXT HXT sing N N 321 SER N CA sing N N 322 SER N H sing N N 323 SER N H2 sing N N 324 SER CA C sing N N 325 SER CA CB sing N N 326 SER CA HA sing N N 327 SER C O doub N N 328 SER C OXT sing N N 329 SER CB OG sing N N 330 SER CB HB2 sing N N 331 SER CB HB3 sing N N 332 SER OG HG sing N N 333 SER OXT HXT sing N N 334 THR N CA sing N N 335 THR N H sing N N 336 THR N H2 sing N N 337 THR CA C sing N N 338 THR CA CB sing N N 339 THR CA HA sing N N 340 THR C O doub N N 341 THR C OXT sing N N 342 THR CB OG1 sing N N 343 THR CB CG2 sing N N 344 THR CB HB sing N N 345 THR OG1 HG1 sing N N 346 THR CG2 HG21 sing N N 347 THR CG2 HG22 sing N N 348 THR CG2 HG23 sing N N 349 THR OXT HXT sing N N 350 TRP N CA sing N N 351 TRP N H sing N N 352 TRP N H2 sing N N 353 TRP CA C sing N N 354 TRP CA CB sing N N 355 TRP CA HA sing N N 356 TRP C O doub N N 357 TRP C OXT sing N N 358 TRP CB CG sing N N 359 TRP CB HB2 sing N N 360 TRP CB HB3 sing N N 361 TRP CG CD1 doub Y N 362 TRP CG CD2 sing Y N 363 TRP CD1 NE1 sing Y N 364 TRP CD1 HD1 sing N N 365 TRP CD2 CE2 doub Y N 366 TRP CD2 CE3 sing Y N 367 TRP NE1 CE2 sing Y N 368 TRP NE1 HE1 sing N N 369 TRP CE2 CZ2 sing Y N 370 TRP CE3 CZ3 doub Y N 371 TRP CE3 HE3 sing N N 372 TRP CZ2 CH2 doub Y N 373 TRP CZ2 HZ2 sing N N 374 TRP CZ3 CH2 sing Y N 375 TRP CZ3 HZ3 sing N N 376 TRP CH2 HH2 sing N N 377 TRP OXT HXT sing N N 378 TYR N CA sing N N 379 TYR N H sing N N 380 TYR N H2 sing N N 381 TYR CA C sing N N 382 TYR CA CB sing N N 383 TYR CA HA sing N N 384 TYR C O doub N N 385 TYR C OXT sing N N 386 TYR CB CG sing N N 387 TYR CB HB2 sing N N 388 TYR CB HB3 sing N N 389 TYR CG CD1 doub Y N 390 TYR CG CD2 sing Y N 391 TYR CD1 CE1 sing Y N 392 TYR CD1 HD1 sing N N 393 TYR CD2 CE2 doub Y N 394 TYR CD2 HD2 sing N N 395 TYR CE1 CZ doub Y N 396 TYR CE1 HE1 sing N N 397 TYR CE2 CZ sing Y N 398 TYR CE2 HE2 sing N N 399 TYR CZ OH sing N N 400 TYR OH HH sing N N 401 TYR OXT HXT sing N N 402 VAL N CA sing N N 403 VAL N H sing N N 404 VAL N H2 sing N N 405 VAL CA C sing N N 406 VAL CA CB sing N N 407 VAL CA HA sing N N 408 VAL C O doub N N 409 VAL C OXT sing N N 410 VAL CB CG1 sing N N 411 VAL CB CG2 sing N N 412 VAL CB HB sing N N 413 VAL CG1 HG11 sing N N 414 VAL CG1 HG12 sing N N 415 VAL CG1 HG13 sing N N 416 VAL CG2 HG21 sing N N 417 VAL CG2 HG22 sing N N 418 VAL CG2 HG23 sing N N 419 VAL OXT HXT sing N N 420 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Polyalanine Rab4A' # _atom_sites.entry_id 1Z0F _atom_sites.fract_transf_matrix[1][1] 0.023221 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007745 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024522 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022110 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_