HEADER IMMUNE SYSTEM 18-MAR-05 1Z5L TITLE STRUCTURE OF A HIGHLY POTENT SHORT-CHAIN GALACTOSYL CERAMIDE AGONIST TITLE 2 BOUND TO CD1D COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1D ANTIGEN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_CELL: S2 CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRMHA3; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 18 EXPRESSION_SYSTEM_CELL: S2 CELLS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PRMHA3 KEYWDS IG FOLD, MHC FOLD, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.M.ZAJONC,C.CANTU,J.MATTNER,D.ZHOU,P.B.SAVAGE,A.BENDELAC,I.A.WILSON, AUTHOR 2 L.TEYTON REVDAT 6 23-AUG-23 1Z5L 1 REMARK HETSYN REVDAT 5 29-JUL-20 1Z5L 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 1Z5L 1 VERSN REVDAT 3 24-FEB-09 1Z5L 1 VERSN REVDAT 2 02-AUG-05 1Z5L 1 JRNL REVDAT 1 19-JUL-05 1Z5L 0 JRNL AUTH D.M.ZAJONC,C.CANTU,J.MATTNER,D.ZHOU,P.B.SAVAGE,A.BENDELAC, JRNL AUTH 2 I.A.WILSON,L.TEYTON JRNL TITL STRUCTURE AND FUNCTION OF A POTENT AGONIST FOR THE JRNL TITL 2 SEMI-INVARIANT NATURAL KILLER T CELL RECEPTOR. JRNL REF NAT.IMMUNOL. V. 6 810 2005 JRNL REFN ISSN 1529-2908 JRNL PMID 16007091 JRNL DOI 10.1038/NI1224 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 44014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1414 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2983 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.4380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5911 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 214 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.307 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.249 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.256 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.637 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6132 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8322 ; 1.848 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 719 ; 5.792 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;33.895 ;24.045 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 922 ;17.989 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;22.531 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 875 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4618 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2429 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3991 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 260 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3714 ; 0.737 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5803 ; 1.135 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2854 ; 1.757 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2519 ; 2.552 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 185 REMARK 3 RESIDUE RANGE : A 500 A 501 REMARK 3 RESIDUE RANGE : A 511 A 512 REMARK 3 RESIDUE RANGE : A 601 A 601 REMARK 3 RESIDUE RANGE : A 701 A 701 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3252 1.6892 21.2058 REMARK 3 T TENSOR REMARK 3 T11: -.3238 T22: -.5038 REMARK 3 T33: -.3070 T12: -.1282 REMARK 3 T13: -.0112 T23: -.0851 REMARK 3 L TENSOR REMARK 3 L11: 5.7707 L22: 2.3160 REMARK 3 L33: 2.1246 L12: -.9734 REMARK 3 L13: -1.7664 L23: 1.2528 REMARK 3 S TENSOR REMARK 3 S11: -.0062 S12: -.3573 S13: .2091 REMARK 3 S21: -.2264 S22: -.0799 S23: -.1010 REMARK 3 S31: -.0291 S32: .1861 S33: .0861 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): -20.5673 -6.5252 43.7986 REMARK 3 T TENSOR REMARK 3 T11: -.3388 T22: -.2765 REMARK 3 T33: -.3574 T12: .0525 REMARK 3 T13: .0482 T23: -.0554 REMARK 3 L TENSOR REMARK 3 L11: 6.0890 L22: 2.8682 REMARK 3 L33: 6.7677 L12: 2.0857 REMARK 3 L13: -2.9288 L23: -2.0525 REMARK 3 S TENSOR REMARK 3 S11: -.5486 S12: -.5566 S13: -.6109 REMARK 3 S21: .1389 S22: .0530 S23: .0596 REMARK 3 S31: .7169 S32: .5386 S33: .4956 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): -19.2467 3.3138 23.9131 REMARK 3 T TENSOR REMARK 3 T11: -.3091 T22: -.4705 REMARK 3 T33: -.3313 T12: -.1024 REMARK 3 T13: -.1009 T23: -.0264 REMARK 3 L TENSOR REMARK 3 L11: 8.3686 L22: 1.4258 REMARK 3 L33: 2.9125 L12: -1.8918 REMARK 3 L13: -1.8051 L23: 1.5714 REMARK 3 S TENSOR REMARK 3 S11: -.0322 S12: .4887 S13: .2014 REMARK 3 S21: -.2154 S22: -.0211 S23: .1131 REMARK 3 S31: -.0921 S32: -.2963 S33: .0533 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 185 REMARK 3 RESIDUE RANGE : C 501 C 501 REMARK 3 RESIDUE RANGE : C 511 C 512 REMARK 3 RESIDUE RANGE : C 602 C 602 REMARK 3 RESIDUE RANGE : C 702 C 702 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5954 39.8260 18.3967 REMARK 3 T TENSOR REMARK 3 T11: -.3460 T22: -.4286 REMARK 3 T33: -.2589 T12: -.0750 REMARK 3 T13: .0372 T23: .0099 REMARK 3 L TENSOR REMARK 3 L11: 4.3337 L22: 2.4328 REMARK 3 L33: 2.8370 L12: -.5661 REMARK 3 L13: -1.5626 L23: 1.1670 REMARK 3 S TENSOR REMARK 3 S11: .0979 S12: -.2713 S13: .3025 REMARK 3 S21: -.1409 S22: -.1212 S23: -.0279 REMARK 3 S31: -.0188 S32: .1156 S33: .0234 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 186 C 279 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1104 31.0647 40.3175 REMARK 3 T TENSOR REMARK 3 T11: -.3212 T22: -.2550 REMARK 3 T33: -.3299 T12: -.0786 REMARK 3 T13: .0534 T23: -.2036 REMARK 3 L TENSOR REMARK 3 L11: 5.0009 L22: 3.6228 REMARK 3 L33: 4.7959 L12: 2.1453 REMARK 3 L13: -1.8113 L23: -1.9363 REMARK 3 S TENSOR REMARK 3 S11: -.2365 S12: -.1139 S13: -.4260 REMARK 3 S21: -.0227 S22: .0411 S23: .0121 REMARK 3 S31: .5254 S32: .1707 S33: .1954 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 99 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0163 41.3866 20.5717 REMARK 3 T TENSOR REMARK 3 T11: -.3304 T22: -.4579 REMARK 3 T33: -.2349 T12: -.0908 REMARK 3 T13: -.0350 T23: -.0241 REMARK 3 L TENSOR REMARK 3 L11: 7.2435 L22: 1.5108 REMARK 3 L33: 2.9623 L12: -1.3498 REMARK 3 L13: -.9347 L23: 1.3996 REMARK 3 S TENSOR REMARK 3 S11: -.0448 S12: .5214 S13: .3105 REMARK 3 S21: -.0619 S22: -.0581 S23: .2476 REMARK 3 S31: -.0343 S32: -.1327 S33: .1029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Z5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48471 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1CD1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, CALCIUM ACETATE, PH 7.3, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.52250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICALLY ACTIVE SUBUNIT IS A HETERODIMER FOMRED BY CD1D REMARK 300 AND BETA-2-MICROGLOBULIN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 59.45100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -38.52250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 GLN A 5 REMARK 465 LYS A 6 REMARK 465 ASN A 7 REMARK 465 GLY A 109 REMARK 465 ASN A 110 REMARK 465 ALA A 111 REMARK 465 SER A 198 REMARK 465 SER A 199 REMARK 465 ALA A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 HIS A 283 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 ILE B 1 REMARK 465 SER C 1 REMARK 465 GLU C 2 REMARK 465 ALA C 3 REMARK 465 GLN C 4 REMARK 465 GLN C 5 REMARK 465 LYS C 6 REMARK 465 PRO C 108 REMARK 465 GLY C 109 REMARK 465 ASN C 110 REMARK 465 ALA C 111 REMARK 465 SER C 198 REMARK 465 SER C 199 REMARK 465 ALA C 200 REMARK 465 HIS C 280 REMARK 465 HIS C 281 REMARK 465 HIS C 282 REMARK 465 HIS C 283 REMARK 465 HIS C 284 REMARK 465 HIS C 285 REMARK 465 ILE D 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 62 CB CG CD OE1 NE2 REMARK 480 GLU A 105 CB CG CD OE1 OE2 REMARK 480 GLU A 113 CB CG CD OE1 OE2 REMARK 480 LYS A 180 CB CG CD CE NZ REMARK 480 GLU A 184 CB CG CD OE1 OE2 REMARK 480 GLU A 254 CB CG CD OE1 OE2 REMARK 480 ALA A 255 CB REMARK 480 GLU A 257 CB CG CD OE1 OE2 REMARK 480 LYS B 3 CB CG CD CE NZ REMARK 480 GLU B 16 CB CG CD OE1 OE2 REMARK 480 LYS B 19 CB CG CD CE NZ REMARK 480 LYS B 58 CB CG CD CE NZ REMARK 480 LYS B 83 CB CG CD CE NZ REMARK 480 GLU B 89 CB CG CD OE1 OE2 REMARK 480 ARG B 97 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG C 21 CB CG CD NE CZ NH1 NH2 REMARK 480 GLN C 61 CB CG CD OE1 NE2 REMARK 480 GLN C 62 CB CG CD OE1 NE2 REMARK 480 ARG C 79 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS C 91 CB CG CD CE NZ REMARK 480 GLU C 105 CB CG CD OE1 OE2 REMARK 480 GLU C 113 CB CG CD OE1 OE2 REMARK 480 ARG C 173 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS C 188 CB CG CD CE NZ REMARK 480 GLU C 243 CB CG CD OE1 OE2 REMARK 480 GLU C 257 CB CG CD OE1 OE2 REMARK 480 GLN C 273 CB CG CD OE1 NE2 REMARK 480 LYS D 3 CB CG CD CE NZ REMARK 480 GLU D 16 CB CG CD OE1 OE2 REMARK 480 LYS D 19 CB CG CD CE NZ REMARK 480 LYS D 48 CB CG CD CE NZ REMARK 480 LYS D 58 CB CG CD CE NZ REMARK 480 GLU D 89 CB CG CD OE1 OE2 REMARK 480 ARG D 97 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 96 N ASP B 98 2.05 REMARK 500 ND2 ASN C 165 C2 NAG F 1 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG MET A 162 NH2 ARG B 97 1655 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 62 CA GLN A 62 CB -0.330 REMARK 500 GLU A 105 CA GLU A 105 CB -0.216 REMARK 500 GLU A 184 CA GLU A 184 CB -0.393 REMARK 500 ALA A 255 CA ALA A 255 CB -0.247 REMARK 500 GLU A 257 CA GLU A 257 CB -0.148 REMARK 500 LYS B 3 CA LYS B 3 CB -0.354 REMARK 500 LYS B 83 CA LYS B 83 CB -0.187 REMARK 500 GLU B 89 CA GLU B 89 CB 0.188 REMARK 500 GLN C 61 CA GLN C 61 CB 0.138 REMARK 500 ARG C 79 CA ARG C 79 CB -0.163 REMARK 500 LYS C 91 CA LYS C 91 CB -0.515 REMARK 500 ARG C 173 CA ARG C 173 CB -0.223 REMARK 500 LYS C 188 CA LYS C 188 CB -0.134 REMARK 500 GLU C 257 CA GLU C 257 CB -0.233 REMARK 500 GLN C 273 CA GLN C 273 CB -0.434 REMARK 500 GLU D 16 CA GLU D 16 CB 0.159 REMARK 500 LYS D 48 CA LYS D 48 CB -0.228 REMARK 500 LYS D 58 CA LYS D 58 CB -0.163 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 62 CB - CA - C ANGL. DEV. = 16.1 DEGREES REMARK 500 GLN A 62 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 GLU A 105 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 GLU A 184 CB - CA - C ANGL. DEV. = 23.5 DEGREES REMARK 500 GLU A 184 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 ASP A 252 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 GLU A 257 N - CA - CB ANGL. DEV. = 19.6 DEGREES REMARK 500 LYS B 3 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 ASP B 96 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP C 43 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 GLN C 62 N - CA - CB ANGL. DEV. = 21.1 DEGREES REMARK 500 ARG C 79 N - CA - CB ANGL. DEV. = 21.1 DEGREES REMARK 500 ASP C 153 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 GLU C 257 CB - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 LYS D 3 N - CA - CB ANGL. DEV. = -18.3 DEGREES REMARK 500 LYS D 48 N - CA - CB ANGL. DEV. = 12.9 DEGREES REMARK 500 ASP D 96 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 89 -171.53 -57.01 REMARK 500 PRO A 90 -82.37 3.75 REMARK 500 GLU A 92 78.05 -50.12 REMARK 500 TYR A 94 -149.27 -90.07 REMARK 500 PRO A 95 118.49 -0.20 REMARK 500 ASP A 166 -52.54 -124.04 REMARK 500 LYS B 48 51.80 -95.19 REMARK 500 TRP B 60 -2.03 81.93 REMARK 500 ARG B 97 11.44 -22.83 REMARK 500 SER C 89 -162.63 -61.38 REMARK 500 PRO C 90 -91.22 -4.00 REMARK 500 TYR C 94 -139.89 -79.82 REMARK 500 PRO C 95 124.41 0.44 REMARK 500 ASP C 166 -54.49 -128.67 REMARK 500 ASP C 242 30.25 -97.88 REMARK 500 HIS D 31 132.78 -172.70 REMARK 500 PRO D 33 2.28 -66.36 REMARK 500 TRP D 60 -5.34 78.09 REMARK 500 ALA D 88 -70.66 -55.77 REMARK 500 ARG D 97 28.34 -36.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 94 PRO A 95 -131.69 REMARK 500 TYR C 94 PRO C 95 -132.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CD1 RELATED DB: PDB REMARK 900 STRUCTURE OF "UNLIGANDED" CD1D DBREF 1Z5L A 1 279 GB 50333 CAA31568 19 297 DBREF 1Z5L C 1 279 GB 50333 CAA31568 19 297 DBREF 1Z5L B 1 99 GB 55153801 AAH85164 21 119 DBREF 1Z5L D 1 99 GB 55153801 AAH85164 21 119 SEQADV 1Z5L HIS A 280 GB 50333 EXPRESSION TAG SEQADV 1Z5L HIS A 281 GB 50333 EXPRESSION TAG SEQADV 1Z5L HIS A 282 GB 50333 EXPRESSION TAG SEQADV 1Z5L HIS A 283 GB 50333 EXPRESSION TAG SEQADV 1Z5L HIS A 284 GB 50333 EXPRESSION TAG SEQADV 1Z5L HIS A 285 GB 50333 EXPRESSION TAG SEQADV 1Z5L HIS C 280 GB 50333 EXPRESSION TAG SEQADV 1Z5L HIS C 281 GB 50333 EXPRESSION TAG SEQADV 1Z5L HIS C 282 GB 50333 EXPRESSION TAG SEQADV 1Z5L HIS C 283 GB 50333 EXPRESSION TAG SEQADV 1Z5L HIS C 284 GB 50333 EXPRESSION TAG SEQADV 1Z5L HIS C 285 GB 50333 EXPRESSION TAG SEQRES 1 A 285 SER GLU ALA GLN GLN LYS ASN TYR THR PHE ARG CYS LEU SEQRES 2 A 285 GLN MET SER SER PHE ALA ASN ARG SER TRP SER ARG THR SEQRES 3 A 285 ASP SER VAL VAL TRP LEU GLY ASP LEU GLN THR HIS ARG SEQRES 4 A 285 TRP SER ASN ASP SER ALA THR ILE SER PHE THR LYS PRO SEQRES 5 A 285 TRP SER GLN GLY LYS LEU SER ASN GLN GLN TRP GLU LYS SEQRES 6 A 285 LEU GLN HIS MET PHE GLN VAL TYR ARG VAL SER PHE THR SEQRES 7 A 285 ARG ASP ILE GLN GLU LEU VAL LYS MET MET SER PRO LYS SEQRES 8 A 285 GLU ASP TYR PRO ILE GLU ILE GLN LEU SER ALA GLY CYS SEQRES 9 A 285 GLU MET TYR PRO GLY ASN ALA SER GLU SER PHE LEU HIS SEQRES 10 A 285 VAL ALA PHE GLN GLY LYS TYR VAL VAL ARG PHE TRP GLY SEQRES 11 A 285 THR SER TRP GLN THR VAL PRO GLY ALA PRO SER TRP LEU SEQRES 12 A 285 ASP LEU PRO ILE LYS VAL LEU ASN ALA ASP GLN GLY THR SEQRES 13 A 285 SER ALA THR VAL GLN MET LEU LEU ASN ASP THR CYS PRO SEQRES 14 A 285 LEU PHE VAL ARG GLY LEU LEU GLU ALA GLY LYS SER ASP SEQRES 15 A 285 LEU GLU LYS GLN GLU LYS PRO VAL ALA TRP LEU SER SER SEQRES 16 A 285 VAL PRO SER SER ALA HIS GLY HIS ARG GLN LEU VAL CYS SEQRES 17 A 285 HIS VAL SER GLY PHE TYR PRO LYS PRO VAL TRP VAL MET SEQRES 18 A 285 TRP MET ARG GLY ASP GLN GLU GLN GLN GLY THR HIS ARG SEQRES 19 A 285 GLY ASP PHE LEU PRO ASN ALA ASP GLU THR TRP TYR LEU SEQRES 20 A 285 GLN ALA THR LEU ASP VAL GLU ALA GLY GLU GLU ALA GLY SEQRES 21 A 285 LEU ALA CYS ARG VAL LYS HIS SER SER LEU GLY GLY GLN SEQRES 22 A 285 ASP ILE ILE LEU TYR TRP HIS HIS HIS HIS HIS HIS SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 B 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 B 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS ALA SER MET ALA GLU PRO LYS SEQRES 8 B 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 285 SER GLU ALA GLN GLN LYS ASN TYR THR PHE ARG CYS LEU SEQRES 2 C 285 GLN MET SER SER PHE ALA ASN ARG SER TRP SER ARG THR SEQRES 3 C 285 ASP SER VAL VAL TRP LEU GLY ASP LEU GLN THR HIS ARG SEQRES 4 C 285 TRP SER ASN ASP SER ALA THR ILE SER PHE THR LYS PRO SEQRES 5 C 285 TRP SER GLN GLY LYS LEU SER ASN GLN GLN TRP GLU LYS SEQRES 6 C 285 LEU GLN HIS MET PHE GLN VAL TYR ARG VAL SER PHE THR SEQRES 7 C 285 ARG ASP ILE GLN GLU LEU VAL LYS MET MET SER PRO LYS SEQRES 8 C 285 GLU ASP TYR PRO ILE GLU ILE GLN LEU SER ALA GLY CYS SEQRES 9 C 285 GLU MET TYR PRO GLY ASN ALA SER GLU SER PHE LEU HIS SEQRES 10 C 285 VAL ALA PHE GLN GLY LYS TYR VAL VAL ARG PHE TRP GLY SEQRES 11 C 285 THR SER TRP GLN THR VAL PRO GLY ALA PRO SER TRP LEU SEQRES 12 C 285 ASP LEU PRO ILE LYS VAL LEU ASN ALA ASP GLN GLY THR SEQRES 13 C 285 SER ALA THR VAL GLN MET LEU LEU ASN ASP THR CYS PRO SEQRES 14 C 285 LEU PHE VAL ARG GLY LEU LEU GLU ALA GLY LYS SER ASP SEQRES 15 C 285 LEU GLU LYS GLN GLU LYS PRO VAL ALA TRP LEU SER SER SEQRES 16 C 285 VAL PRO SER SER ALA HIS GLY HIS ARG GLN LEU VAL CYS SEQRES 17 C 285 HIS VAL SER GLY PHE TYR PRO LYS PRO VAL TRP VAL MET SEQRES 18 C 285 TRP MET ARG GLY ASP GLN GLU GLN GLN GLY THR HIS ARG SEQRES 19 C 285 GLY ASP PHE LEU PRO ASN ALA ASP GLU THR TRP TYR LEU SEQRES 20 C 285 GLN ALA THR LEU ASP VAL GLU ALA GLY GLU GLU ALA GLY SEQRES 21 C 285 LEU ALA CYS ARG VAL LYS HIS SER SER LEU GLY GLY GLN SEQRES 22 C 285 ASP ILE ILE LEU TYR TRP HIS HIS HIS HIS HIS HIS SEQRES 1 D 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 D 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 D 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 D 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 D 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 D 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 D 99 ALA CYS ARG VAL LYS HIS ALA SER MET ALA GLU PRO LYS SEQRES 8 D 99 THR VAL TYR TRP ASP ARG ASP MET MODRES 1Z5L ASN A 20 ASN GLYCOSYLATION SITE MODRES 1Z5L ASN A 42 ASN GLYCOSYLATION SITE MODRES 1Z5L ASN A 165 ASN GLYCOSYLATION SITE MODRES 1Z5L ASN C 42 ASN GLYCOSYLATION SITE MODRES 1Z5L ASN C 165 ASN GLYCOSYLATION SITE HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG A 500 14 HET NAG A 501 14 HET PBS A 601 42 HET R16 A 701 16 HET NAG C 501 14 HET PBS C 602 42 HET R16 C 702 16 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PBS (2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL) HETNAM 2 PBS OXY]-2-AMINO-OCTADECANE-3,4-DIOL HETNAM R16 HEXADECANE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 7(C8 H15 N O6) FORMUL 9 PBS 2(C32 H63 N O9) FORMUL 10 R16 2(C16 H34) FORMUL 14 HOH *165(H2 O) HELIX 1 1 SER A 59 LYS A 86 1 28 HELIX 2 2 PRO A 140 TRP A 142 5 3 HELIX 3 3 LEU A 143 ALA A 152 1 10 HELIX 4 4 ASP A 153 ASP A 166 1 14 HELIX 5 5 ASP A 166 GLY A 179 1 14 HELIX 6 6 GLY A 179 GLU A 184 1 6 HELIX 7 7 SER A 269 GLY A 271 5 3 HELIX 8 8 SER C 59 LYS C 86 1 28 HELIX 9 9 PRO C 140 TRP C 142 5 3 HELIX 10 10 LEU C 143 ASN C 151 1 9 HELIX 11 11 ASP C 153 ASP C 166 1 14 HELIX 12 12 ASP C 166 GLY C 179 1 14 HELIX 13 13 GLY C 179 GLU C 184 1 6 HELIX 14 14 HIS C 267 GLY C 271 5 5 SHEET 1 A 8 SER A 48 PHE A 49 0 SHEET 2 A 8 LEU A 35 TRP A 40 -1 N ARG A 39 O SER A 48 SHEET 3 A 8 TRP A 23 LEU A 32 -1 N LEU A 32 O LEU A 35 SHEET 4 A 8 THR A 9 ASN A 20 -1 N MET A 15 O ASP A 27 SHEET 5 A 8 ILE A 96 GLU A 105 -1 O ALA A 102 N CYS A 12 SHEET 6 A 8 GLU A 113 PHE A 120 -1 O ALA A 119 N GLN A 99 SHEET 7 A 8 LYS A 123 TRP A 129 -1 O VAL A 126 N VAL A 118 SHEET 8 A 8 SER A 132 THR A 135 -1 O SER A 132 N TRP A 129 SHEET 1 B 4 VAL A 190 VAL A 196 0 SHEET 2 B 4 ARG A 204 PHE A 213 -1 O VAL A 207 N SER A 194 SHEET 3 B 4 TRP A 245 VAL A 253 -1 O LEU A 251 N LEU A 206 SHEET 4 B 4 HIS A 233 ARG A 234 -1 N HIS A 233 O THR A 250 SHEET 1 C 4 VAL A 190 VAL A 196 0 SHEET 2 C 4 ARG A 204 PHE A 213 -1 O VAL A 207 N SER A 194 SHEET 3 C 4 TRP A 245 VAL A 253 -1 O LEU A 251 N LEU A 206 SHEET 4 C 4 LEU A 238 PRO A 239 -1 N LEU A 238 O TYR A 246 SHEET 1 D 4 GLN A 227 GLU A 228 0 SHEET 2 D 4 VAL A 218 ARG A 224 -1 N ARG A 224 O GLN A 227 SHEET 3 D 4 ALA A 262 HIS A 267 -1 O ALA A 262 N MET A 223 SHEET 4 D 4 ILE A 275 TYR A 278 -1 O ILE A 275 N VAL A 265 SHEET 1 E 4 GLN B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 E 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 E 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 F 4 GLN B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 F 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 G 4 LYS B 44 LYS B 45 0 SHEET 2 G 4 ILE B 35 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 G 4 TYR B 78 HIS B 84 -1 O ARG B 81 N GLN B 38 SHEET 4 G 4 LYS B 91 TYR B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 H 8 SER C 48 PHE C 49 0 SHEET 2 H 8 LEU C 35 TRP C 40 -1 N ARG C 39 O SER C 48 SHEET 3 H 8 TRP C 23 LEU C 32 -1 N LEU C 32 O LEU C 35 SHEET 4 H 8 TYR C 8 ASN C 20 -1 N MET C 15 O ASP C 27 SHEET 5 H 8 ILE C 96 MET C 106 -1 O MET C 106 N TYR C 8 SHEET 6 H 8 GLU C 113 PHE C 120 -1 O ALA C 119 N GLN C 99 SHEET 7 H 8 LYS C 123 TRP C 129 -1 O VAL C 126 N VAL C 118 SHEET 8 H 8 SER C 132 THR C 135 -1 O SER C 132 N TRP C 129 SHEET 1 I 4 VAL C 190 VAL C 196 0 SHEET 2 I 4 HIS C 203 PHE C 213 -1 O GLN C 205 N VAL C 196 SHEET 3 I 4 TRP C 245 GLU C 254 -1 O ALA C 249 N CYS C 208 SHEET 4 I 4 HIS C 233 ARG C 234 -1 N HIS C 233 O THR C 250 SHEET 1 J 4 VAL C 190 VAL C 196 0 SHEET 2 J 4 HIS C 203 PHE C 213 -1 O GLN C 205 N VAL C 196 SHEET 3 J 4 TRP C 245 GLU C 254 -1 O ALA C 249 N CYS C 208 SHEET 4 J 4 LEU C 238 PRO C 239 -1 N LEU C 238 O TYR C 246 SHEET 1 K 4 GLN C 227 GLU C 228 0 SHEET 2 K 4 TRP C 219 ARG C 224 -1 N ARG C 224 O GLN C 227 SHEET 3 K 4 ALA C 262 LYS C 266 -1 O ALA C 262 N MET C 223 SHEET 4 K 4 ILE C 275 TYR C 278 -1 O ILE C 275 N VAL C 265 SHEET 1 L 4 GLN D 6 SER D 11 0 SHEET 2 L 4 ASN D 21 PHE D 30 -1 O TYR D 26 N GLN D 8 SHEET 3 L 4 PHE D 62 PHE D 70 -1 O PHE D 70 N ASN D 21 SHEET 4 L 4 VAL D 49 MET D 51 -1 N GLU D 50 O HIS D 67 SHEET 1 M 4 GLN D 6 SER D 11 0 SHEET 2 M 4 ASN D 21 PHE D 30 -1 O TYR D 26 N GLN D 8 SHEET 3 M 4 PHE D 62 PHE D 70 -1 O PHE D 70 N ASN D 21 SHEET 4 M 4 SER D 55 PHE D 56 -1 N SER D 55 O TYR D 63 SHEET 1 N 4 LYS D 44 LYS D 45 0 SHEET 2 N 4 ILE D 35 LYS D 41 -1 N LYS D 41 O LYS D 44 SHEET 3 N 4 TYR D 78 HIS D 84 -1 O ARG D 81 N GLN D 38 SHEET 4 N 4 LYS D 91 TYR D 94 -1 O LYS D 91 N VAL D 82 SSBOND 1 CYS A 104 CYS A 168 1555 1555 2.12 SSBOND 2 CYS A 208 CYS A 263 1555 1555 2.05 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS C 104 CYS C 168 1555 1555 2.11 SSBOND 5 CYS C 208 CYS C 263 1555 1555 2.07 SSBOND 6 CYS D 25 CYS D 80 1555 1555 2.05 LINK ND2 ASN A 20 C1 NAG A 500 1555 1555 1.45 LINK ND2 ASN A 42 C1 NAG A 501 1555 1555 1.45 LINK ND2 ASN A 165 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN C 42 C1 NAG C 501 1555 1555 1.46 LINK ND2 ASN C 165 C1 NAG F 1 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 CISPEP 1 TYR A 214 PRO A 215 0 3.07 CISPEP 2 HIS B 31 PRO B 32 0 2.33 CISPEP 3 TYR C 214 PRO C 215 0 -6.19 CISPEP 4 HIS D 31 PRO D 32 0 5.22 CRYST1 59.451 77.045 111.014 90.00 107.63 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016821 0.000000 0.005345 0.00000 SCALE2 0.000000 0.012979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009452 0.00000