data_1Z5T # _entry.id 1Z5T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Z5T pdb_00001z5t 10.2210/pdb1z5t/pdb NDB BD0075 ? ? RCSB RCSB032334 ? ? WWPDB D_1000032334 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2024-02-14 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' Advisory 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 4 'Structure model' software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 8 5 'Structure model' struct_conn 9 5 'Structure model' struct_site 10 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.language' 5 4 'Structure model' '_software.location' 6 4 'Structure model' '_software.name' 7 4 'Structure model' '_software.type' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 27 5 'Structure model' '_pdbx_struct_conn_angle.value' 28 5 'Structure model' '_struct_conn.conn_type_id' 29 5 'Structure model' '_struct_conn.id' 30 5 'Structure model' '_struct_conn.pdbx_dist_value' 31 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 32 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 33 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 34 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 35 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 36 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 37 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 38 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 39 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 40 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 41 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 42 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 43 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 44 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 45 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 46 5 'Structure model' '_struct_conn.ptnr2_symmetry' 47 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 48 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 49 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 1Z5T _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-03-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name NDB _pdbx_database_related.db_id BD0054 _pdbx_database_related.details 'The unmodified dodecamer grown in presence of thallium I cations.' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Moulaei, T.' 1 'Maehigashi, T.' 2 'Lountos, G.T.' 3 'Komeda, S.' 4 'Watkins, D.' 5 'Stone, M.P.' 6 'Marky, L.A.' 7 'Li, J.S.' 8 'Gold, B.' 9 'Williams, L.D.' 10 # _citation.id primary _citation.title 'Structure of B-DNA with cations tethered in the major groove.' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 7458 _citation.page_last 7468 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15895989 _citation.pdbx_database_id_DOI 10.1021/bi050128z # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Moulaei, T.' 1 ? primary 'Maehigashi, T.' 2 ? primary 'Lountos, G.T.' 3 ? primary 'Komeda, S.' 4 ? primary 'Watkins, D.' 5 ? primary 'Stone, M.P.' 6 ? primary 'Marky, L.A.' 7 ? primary 'Li, J.S.' 8 ? primary 'Gold, B.' 9 ? primary 'Williams, L.D.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*(ZDU)P*(ZDU)P*CP*GP*CP*G)-3'" 3749.528 2 ? ? ? 'Dickerson-Drew Dodecamer' 2 non-polymer syn SPERMINE 202.340 2 ? ? ? ? 3 non-polymer syn 'THALLIUM (I) ION' 204.383 8 ? ? ? ? 4 water nat water 18.015 106 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(ZDU)(ZDU)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAAUUCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMINE SPM 3 'THALLIUM (I) ION' TL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 ZDU n 1 8 ZDU n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 TL non-polymer . 'THALLIUM (I) ION' ? 'Tl 1' 204.383 ZDU 'DNA linking' n "5-(3-AMINOPROPYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C12 H20 N3 O8 P' 365.276 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 ZDU 7 7 7 ZDU ZDU A . n A 1 8 ZDU 8 8 8 ZDU ZDU A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 ZDU 7 19 19 ZDU ZDU B . n B 1 8 ZDU 8 20 20 ZDU ZDU B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPM 1 25 25 SPM SPM A . D 3 TL 1 27 27 TL TL A . E 3 TL 1 29 29 TL TL A . F 3 TL 1 30 30 TL TL A . G 3 TL 1 32 32 TL TL A . H 3 TL 1 33 33 TL TL A . I 2 SPM 1 26 26 SPM SPN B . J 3 TL 1 28 28 TL TL B . K 3 TL 1 31 31 TL TL B . L 3 TL 1 34 34 TL TL B . M 4 HOH 1 35 35 HOH HOH A . M 4 HOH 2 36 36 HOH HOH A . M 4 HOH 3 38 38 HOH HOH A . M 4 HOH 4 39 39 HOH HOH A . M 4 HOH 5 41 41 HOH HOH A . M 4 HOH 6 42 42 HOH HOH A . M 4 HOH 7 44 44 HOH HOH A . M 4 HOH 8 45 45 HOH HOH A . M 4 HOH 9 47 47 HOH HOH A . M 4 HOH 10 48 48 HOH HOH A . M 4 HOH 11 49 49 HOH HOH A . M 4 HOH 12 50 50 HOH HOH A . M 4 HOH 13 56 56 HOH HOH A . M 4 HOH 14 58 58 HOH HOH A . M 4 HOH 15 59 59 HOH HOH A . M 4 HOH 16 60 60 HOH HOH A . M 4 HOH 17 64 64 HOH HOH A . M 4 HOH 18 68 68 HOH HOH A . M 4 HOH 19 71 71 HOH HOH A . M 4 HOH 20 72 72 HOH HOH A . M 4 HOH 21 74 74 HOH HOH A . M 4 HOH 22 75 75 HOH HOH A . M 4 HOH 23 76 76 HOH HOH A . M 4 HOH 24 77 77 HOH HOH A . M 4 HOH 25 78 78 HOH HOH A . M 4 HOH 26 79 79 HOH HOH A . M 4 HOH 27 80 80 HOH HOH A . M 4 HOH 28 82 82 HOH HOH A . M 4 HOH 29 84 84 HOH HOH A . M 4 HOH 30 86 86 HOH HOH A . M 4 HOH 31 87 87 HOH HOH A . M 4 HOH 32 89 89 HOH HOH A . M 4 HOH 33 90 90 HOH HOH A . M 4 HOH 34 93 93 HOH HOH A . M 4 HOH 35 95 95 HOH HOH A . M 4 HOH 36 96 96 HOH HOH A . M 4 HOH 37 99 99 HOH HOH A . M 4 HOH 38 100 100 HOH HOH A . M 4 HOH 39 103 103 HOH HOH A . M 4 HOH 40 104 104 HOH HOH A . M 4 HOH 41 106 106 HOH HOH A . M 4 HOH 42 111 111 HOH HOH A . M 4 HOH 43 112 112 HOH HOH A . M 4 HOH 44 113 113 HOH HOH A . M 4 HOH 45 114 114 HOH HOH A . M 4 HOH 46 117 117 HOH HOH A . M 4 HOH 47 118 118 HOH HOH A . M 4 HOH 48 119 119 HOH HOH A . M 4 HOH 49 120 120 HOH HOH A . M 4 HOH 50 121 121 HOH HOH A . M 4 HOH 51 122 122 HOH HOH A . M 4 HOH 52 126 126 HOH HOH A . M 4 HOH 53 127 127 HOH HOH A . M 4 HOH 54 128 128 HOH HOH A . M 4 HOH 55 132 132 HOH HOH A . M 4 HOH 56 134 134 HOH HOH A . M 4 HOH 57 137 137 HOH HOH A . M 4 HOH 58 139 139 HOH HOH A . M 4 HOH 59 140 140 HOH HOH A . N 4 HOH 1 37 37 HOH HOH B . N 4 HOH 2 40 40 HOH HOH B . N 4 HOH 3 43 43 HOH HOH B . N 4 HOH 4 46 46 HOH HOH B . N 4 HOH 5 51 51 HOH HOH B . N 4 HOH 6 52 52 HOH HOH B . N 4 HOH 7 53 53 HOH HOH B . N 4 HOH 8 54 54 HOH HOH B . N 4 HOH 9 55 55 HOH HOH B . N 4 HOH 10 57 57 HOH HOH B . N 4 HOH 11 61 61 HOH HOH B . N 4 HOH 12 62 62 HOH HOH B . N 4 HOH 13 63 63 HOH HOH B . N 4 HOH 14 65 65 HOH HOH B . N 4 HOH 15 66 66 HOH HOH B . N 4 HOH 16 67 67 HOH HOH B . N 4 HOH 17 69 69 HOH HOH B . N 4 HOH 18 70 70 HOH HOH B . N 4 HOH 19 73 73 HOH HOH B . N 4 HOH 20 81 81 HOH HOH B . N 4 HOH 21 83 83 HOH HOH B . N 4 HOH 22 85 85 HOH HOH B . N 4 HOH 23 88 88 HOH HOH B . N 4 HOH 24 91 91 HOH HOH B . N 4 HOH 25 92 92 HOH HOH B . N 4 HOH 26 94 94 HOH HOH B . N 4 HOH 27 97 97 HOH HOH B . N 4 HOH 28 98 98 HOH HOH B . N 4 HOH 29 101 101 HOH HOH B . N 4 HOH 30 102 102 HOH HOH B . N 4 HOH 31 105 105 HOH HOH B . N 4 HOH 32 107 107 HOH HOH B . N 4 HOH 33 108 108 HOH HOH B . N 4 HOH 34 109 109 HOH HOH B . N 4 HOH 35 110 110 HOH HOH B . N 4 HOH 36 115 115 HOH HOH B . N 4 HOH 37 116 116 HOH HOH B . N 4 HOH 38 123 123 HOH HOH B . N 4 HOH 39 124 124 HOH HOH B . N 4 HOH 40 125 125 HOH HOH B . N 4 HOH 41 129 129 HOH HOH B . N 4 HOH 42 130 130 HOH HOH B . N 4 HOH 43 131 131 HOH HOH B . N 4 HOH 44 133 133 HOH HOH B . N 4 HOH 45 135 135 HOH HOH B . N 4 HOH 46 136 136 HOH HOH B . N 4 HOH 47 138 138 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A DC 1 ? "O5'" ? A DC 1 "O5'" 2 1 Y 0 B DC 13 ? "O5'" ? B DC 1 "O5'" 3 1 N 1 A SPM 25 ? C9 ? C SPM 1 C9 4 1 N 1 A SPM 25 ? N10 ? C SPM 1 N10 5 1 N 1 A SPM 25 ? C11 ? C SPM 1 C11 6 1 N 1 A SPM 25 ? C12 ? C SPM 1 C12 7 1 N 1 A SPM 25 ? C13 ? C SPM 1 C13 8 1 N 1 A SPM 25 ? N14 ? C SPM 1 N14 9 1 N 1 B SPM 26 ? C7 ? I SPM 1 C7 10 1 N 1 B SPM 26 ? C8 ? I SPM 1 C8 11 1 N 1 B SPM 26 ? C9 ? I SPM 1 C9 12 1 N 1 B SPM 26 ? N10 ? I SPM 1 N10 13 1 N 1 B SPM 26 ? C11 ? I SPM 1 C11 14 1 N 1 B SPM 26 ? C12 ? I SPM 1 C12 15 1 N 1 B SPM 26 ? C13 ? I SPM 1 C13 16 1 N 1 B SPM 26 ? N14 ? I SPM 1 N14 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 4 CNS . ? ? ? ? phasing ? ? ? 5 # _cell.length_a 24.994 _cell.length_b 41.057 _cell.length_c 66.339 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 1Z5T _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 1Z5T _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 1Z5T _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 295.2 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;MPD, cacodylate (pH adjusted using spermine base), spermine acetate, ANAPOE-C12E10 (detergent), pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295.2K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 cacodylate ? ? ? 1 3 1 'spermine acetate' ? ? ? 1 4 1 'ANAPOE-C12E10 (detergent)' ? ? ? 1 5 1 H2O ? ? ? 1 6 2 MPD ? ? ? 1 7 2 'ANAPOE-C12E10 (detergent)' ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 113.2 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2003-12-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00930 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00930 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID # _reflns.entry_id 1Z5T _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.49 _reflns.number_obs 8901 _reflns.percent_possible_obs 77.3 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_chi_squared 0.969 _reflns.pdbx_redundancy 3.300 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_low 1.54 _reflns_shell.d_res_high 1.49 _reflns_shell.number_measured_obs 204 _reflns_shell.percent_possible_obs 9.300 _reflns_shell.Rmerge_I_obs 0.555 _reflns_shell.pdbx_chi_squared 0.456 _reflns_shell.pdbx_redundancy 1.300 _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.percent_possible_all 49.1 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 1.600 _refine.ls_d_res_low 34.910 _refine.pdbx_ls_sigma_F 1.01 _refine.pdbx_data_cutoff_high_absF 447402.281 _refine.pdbx_data_cutoff_low_absF 0.000 _refine.ls_percent_reflns_obs 77.200 _refine.ls_number_reflns_obs 7355 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.244 _refine.ls_percent_reflns_R_free 10.600 _refine.ls_number_reflns_R_free 778 _refine.ls_R_factor_R_free_error 0.009 _refine.B_iso_mean 35.400 _refine.solvent_model_param_bsol 62.017 _refine.solvent_model_param_ksol 0.317 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] 5.870 _refine.aniso_B[2][2] 1.220 _refine.aniso_B[3][3] -7.090 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT MODEL' _refine.entry_id 1Z5T _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 7355 _refine.ls_R_factor_all 0.233 _refine.ls_R_factor_obs 0.233 _refine.ls_redundancy_reflns_obs ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'NDB entery BDL084' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.occupancy_max ? _refine.occupancy_min ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.Luzzati_coordinate_error_obs 0.190 _refine_analyze.Luzzati_sigma_a_obs 0.090 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.240 _refine_analyze.Luzzati_sigma_a_free 0.130 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1Z5T _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 498 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 106 _refine_hist.number_atoms_total 626 _refine_hist.d_res_high 1.600 _refine_hist.d_res_low 34.910 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.0098 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 1.3809 0.000 ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? 1.000 0.000 ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? 1.430 0.000 ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? 0.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? 0.000 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? 0.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? 0.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.600 _refine_ls_shell.d_res_low 1.660 _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.percent_reflns_obs 24.300 _refine_ls_shell.number_reflns_R_work 203 _refine_ls_shell.R_factor_R_work 0.172 _refine_ls_shell.R_factor_R_free 0.222 _refine_ls_shell.percent_reflns_R_free 11.400 _refine_ls_shell.number_reflns_R_free 26 _refine_ls_shell.R_factor_R_free_error 0.043 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein.top protein_rep.param 'X-RAY DIFFRACTION' 2 dna-rna_tinoush.top dna-rna_rep_tinoush.param 'X-RAY DIFFRACTION' 3 water.top water_rep.param 'X-RAY DIFFRACTION' 4 ion2.top ion2.param 'X-RAY DIFFRACTION' 5 spm.top spm.param 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1Z5T _database_PDB_matrix.origx[1][1] 1.00000 _database_PDB_matrix.origx[1][2] 0.00000 _database_PDB_matrix.origx[1][3] 0.00000 _database_PDB_matrix.origx[2][1] 0.00000 _database_PDB_matrix.origx[2][2] 1.00000 _database_PDB_matrix.origx[2][3] 0.00000 _database_PDB_matrix.origx[3][1] 0.00000 _database_PDB_matrix.origx[3][2] 0.00000 _database_PDB_matrix.origx[3][3] 1.00000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1Z5T _struct.title ;Crystal Structure of [d(CGCGAA(Z3dU)(Z3dU)CGCG)]2, Z3dU:5-(3-aminopropyl)-2'-deoxyuridine, in presence of thallium I. ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Z5T _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, Tl+, thallium, modified DNA, cations, modified thymine, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 4 ? N N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1Z5T _struct_ref.pdbx_db_accession 1Z5T _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1Z5T A 1 ? 12 ? 1Z5T 1 ? 12 ? 1 12 2 1 1Z5T B 1 ? 12 ? 1Z5T 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 6 "O3'" ? ? ? 1_555 A ZDU 7 P ? ? A DA 6 A ZDU 7 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale2 covale both ? A ZDU 7 "O3'" ? ? ? 1_555 A ZDU 8 P ? ? A ZDU 7 A ZDU 8 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale3 covale both ? A ZDU 8 "O3'" ? ? ? 1_555 A DC 9 P ? ? A ZDU 8 A DC 9 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale4 covale both ? B DA 6 "O3'" ? ? ? 1_555 B ZDU 7 P ? ? B DA 18 B ZDU 19 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale5 covale both ? B ZDU 7 "O3'" ? ? ? 1_555 B ZDU 8 P ? ? B ZDU 19 B ZDU 20 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale6 covale both ? B ZDU 8 "O3'" ? ? ? 1_555 B DC 9 P ? ? B ZDU 20 B DC 21 1_555 ? ? ? ? ? ? ? 1.605 ? ? metalc1 metalc ? ? A DA 6 OP1 ? ? ? 1_555 G TL . TL ? ? A DA 6 A TL 32 1_555 ? ? ? ? ? ? ? 2.564 ? ? metalc2 metalc ? ? A DA 6 "O5'" ? ? ? 1_555 G TL . TL ? ? A DA 6 A TL 32 1_555 ? ? ? ? ? ? ? 3.308 ? ? metalc3 metalc ? ? A ZDU 7 O2 ? ? ? 1_555 F TL . TL ? ? A ZDU 7 A TL 30 1_555 ? ? ? ? ? ? ? 2.799 ? ? metalc4 metalc ? ? A ZDU 8 "O4'" ? ? ? 1_555 F TL . TL ? ? A ZDU 8 A TL 30 1_555 ? ? ? ? ? ? ? 3.282 ? ? metalc5 metalc ? ? A DG 10 N2 ? ? ? 1_555 E TL . TL ? ? A DG 10 A TL 29 1_555 ? ? ? ? ? ? ? 3.465 ? ? metalc6 metalc ? ? A DG 10 N3 ? ? ? 1_555 E TL . TL ? ? A DG 10 A TL 29 1_555 ? ? ? ? ? ? ? 2.761 ? ? metalc7 metalc ? ? A DG 10 "O4'" ? ? ? 1_555 E TL . TL ? ? A DG 10 A TL 29 1_555 ? ? ? ? ? ? ? 3.315 ? ? metalc8 metalc ? ? A DC 11 "O4'" ? ? ? 1_555 E TL . TL ? ? A DC 11 A TL 29 1_555 ? ? ? ? ? ? ? 2.804 ? ? metalc9 metalc ? ? D TL . TL ? ? ? 1_555 M HOH . O ? ? A TL 27 A HOH 38 1_555 ? ? ? ? ? ? ? 2.861 ? ? metalc10 metalc ? ? D TL . TL ? ? ? 1_555 M HOH . O ? ? A TL 27 A HOH 71 1_555 ? ? ? ? ? ? ? 2.787 ? ? metalc11 metalc ? ? E TL . TL ? ? ? 1_555 M HOH . O ? ? A TL 29 A HOH 48 1_555 ? ? ? ? ? ? ? 2.916 ? ? metalc12 metalc ? ? E TL . TL ? ? ? 1_555 B DG 4 N2 ? ? A TL 29 B DG 16 1_555 ? ? ? ? ? ? ? 3.131 ? ? metalc13 metalc ? ? E TL . TL ? ? ? 1_555 N HOH . O ? ? A TL 29 B HOH 55 2_444 ? ? ? ? ? ? ? 2.980 ? ? metalc14 metalc ? ? F TL . TL ? ? ? 1_555 M HOH . O ? ? A TL 30 A HOH 44 1_555 ? ? ? ? ? ? ? 2.845 ? ? metalc15 metalc ? ? F TL . TL ? ? ? 1_555 B ZDU 7 O2 ? ? A TL 30 B ZDU 19 1_555 ? ? ? ? ? ? ? 2.824 ? ? metalc16 metalc ? ? F TL . TL ? ? ? 1_555 B ZDU 8 "O4'" ? ? A TL 30 B ZDU 20 1_555 ? ? ? ? ? ? ? 3.298 ? ? metalc17 metalc ? ? F TL . TL ? ? ? 1_555 N HOH . O ? ? A TL 30 B HOH 40 1_555 ? ? ? ? ? ? ? 2.767 ? ? metalc18 metalc ? ? H TL . TL ? ? ? 1_555 M HOH . O ? ? A TL 33 A HOH 58 1_555 ? ? ? ? ? ? ? 3.161 ? ? metalc19 metalc ? ? M HOH . O ? ? ? 1_555 K TL . TL ? ? A HOH 39 B TL 31 1_555 ? ? ? ? ? ? ? 2.563 ? ? metalc20 metalc ? ? M HOH . O ? ? ? 1_555 K TL . TL ? ? A HOH 106 B TL 31 1_555 ? ? ? ? ? ? ? 2.463 ? ? metalc21 metalc ? ? L TL . TL ? ? ? 1_555 N HOH . O ? ? B TL 34 B HOH 57 1_555 ? ? ? ? ? ? ? 2.745 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B ZDU 8 N3 ? ? A DA 5 B ZDU 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B ZDU 8 O4 ? ? A DA 5 B ZDU 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B ZDU 7 N3 ? ? A DA 6 B ZDU 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B ZDU 7 O4 ? ? A DA 6 B ZDU 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A ZDU 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A ZDU 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A ZDU 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A ZDU 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A ZDU 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A ZDU 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A ZDU 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A ZDU 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DA 6 ? A DA 6 ? 1_555 TL ? G TL . ? A TL 32 ? 1_555 "O5'" ? A DA 6 ? A DA 6 ? 1_555 48.0 ? 2 O2 ? A ZDU 7 ? A ZDU 7 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 "O4'" ? A ZDU 8 ? A ZDU 8 ? 1_555 66.7 ? 3 O2 ? A ZDU 7 ? A ZDU 7 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 O ? M HOH . ? A HOH 44 ? 1_555 95.1 ? 4 "O4'" ? A ZDU 8 ? A ZDU 8 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 O ? M HOH . ? A HOH 44 ? 1_555 95.2 ? 5 O2 ? A ZDU 7 ? A ZDU 7 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 O2 ? B ZDU 7 ? B ZDU 19 ? 1_555 80.1 ? 6 "O4'" ? A ZDU 8 ? A ZDU 8 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 O2 ? B ZDU 7 ? B ZDU 19 ? 1_555 139.8 ? 7 O ? M HOH . ? A HOH 44 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 O2 ? B ZDU 7 ? B ZDU 19 ? 1_555 110.3 ? 8 O2 ? A ZDU 7 ? A ZDU 7 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 "O4'" ? B ZDU 8 ? B ZDU 20 ? 1_555 134.3 ? 9 "O4'" ? A ZDU 8 ? A ZDU 8 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 "O4'" ? B ZDU 8 ? B ZDU 20 ? 1_555 154.1 ? 10 O ? M HOH . ? A HOH 44 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 "O4'" ? B ZDU 8 ? B ZDU 20 ? 1_555 70.8 ? 11 O2 ? B ZDU 7 ? B ZDU 19 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 "O4'" ? B ZDU 8 ? B ZDU 20 ? 1_555 66.0 ? 12 O2 ? A ZDU 7 ? A ZDU 7 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 O ? N HOH . ? B HOH 40 ? 1_555 116.9 ? 13 "O4'" ? A ZDU 8 ? A ZDU 8 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 O ? N HOH . ? B HOH 40 ? 1_555 75.1 ? 14 O ? M HOH . ? A HOH 44 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 O ? N HOH . ? B HOH 40 ? 1_555 137.6 ? 15 O2 ? B ZDU 7 ? B ZDU 19 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 O ? N HOH . ? B HOH 40 ? 1_555 102.4 ? 16 "O4'" ? B ZDU 8 ? B ZDU 20 ? 1_555 TL ? F TL . ? A TL 30 ? 1_555 O ? N HOH . ? B HOH 40 ? 1_555 100.2 ? 17 N2 ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 N3 ? A DG 10 ? A DG 10 ? 1_555 41.4 ? 18 N2 ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 "O4'" ? A DG 10 ? A DG 10 ? 1_555 109.5 ? 19 N3 ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 "O4'" ? A DG 10 ? A DG 10 ? 1_555 69.1 ? 20 N2 ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 "O4'" ? A DC 11 ? A DC 11 ? 1_555 104.1 ? 21 N3 ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 "O4'" ? A DC 11 ? A DC 11 ? 1_555 115.4 ? 22 "O4'" ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 "O4'" ? A DC 11 ? A DC 11 ? 1_555 117.3 ? 23 N2 ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 O ? M HOH . ? A HOH 48 ? 1_555 136.2 ? 24 N3 ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 O ? M HOH . ? A HOH 48 ? 1_555 129.1 ? 25 "O4'" ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 O ? M HOH . ? A HOH 48 ? 1_555 74.5 ? 26 "O4'" ? A DC 11 ? A DC 11 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 O ? M HOH . ? A HOH 48 ? 1_555 112.4 ? 27 N2 ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 N2 ? B DG 4 ? B DG 16 ? 1_555 55.7 ? 28 N3 ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 N2 ? B DG 4 ? B DG 16 ? 1_555 71.5 ? 29 "O4'" ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 N2 ? B DG 4 ? B DG 16 ? 1_555 98.9 ? 30 "O4'" ? A DC 11 ? A DC 11 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 N2 ? B DG 4 ? B DG 16 ? 1_555 143.5 ? 31 O ? M HOH . ? A HOH 48 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 N2 ? B DG 4 ? B DG 16 ? 1_555 80.5 ? 32 N2 ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 O ? N HOH . ? B HOH 55 ? 2_444 109.4 ? 33 N3 ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 O ? N HOH . ? B HOH 55 ? 2_444 148.1 ? 34 "O4'" ? A DG 10 ? A DG 10 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 O ? N HOH . ? B HOH 55 ? 2_444 131.5 ? 35 "O4'" ? A DC 11 ? A DC 11 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 O ? N HOH . ? B HOH 55 ? 2_444 79.3 ? 36 O ? M HOH . ? A HOH 48 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 O ? N HOH . ? B HOH 55 ? 2_444 57.3 ? 37 N2 ? B DG 4 ? B DG 16 ? 1_555 TL ? E TL . ? A TL 29 ? 1_555 O ? N HOH . ? B HOH 55 ? 2_444 80.3 ? 38 O ? M HOH . ? A HOH 38 ? 1_555 TL ? D TL . ? A TL 27 ? 1_555 O ? M HOH . ? A HOH 71 ? 1_555 127.4 ? 39 O ? M HOH . ? A HOH 39 ? 1_555 TL ? K TL . ? B TL 31 ? 1_555 O ? M HOH . ? A HOH 106 ? 1_555 153.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SPM 25 ? 5 'BINDING SITE FOR RESIDUE SPM A 25' AC2 Software B SPM 26 ? 5 'BINDING SITE FOR RESIDUE SPM B 26' AC3 Software A TL 27 ? 4 'BINDING SITE FOR RESIDUE TL A 27' AC4 Software B TL 28 ? 1 'BINDING SITE FOR RESIDUE TL B 28' AC5 Software A TL 29 ? 5 'BINDING SITE FOR RESIDUE TL A 29' AC6 Software A TL 30 ? 6 'BINDING SITE FOR RESIDUE TL A 30' AC7 Software B TL 31 ? 3 'BINDING SITE FOR RESIDUE TL B 31' AC8 Software A TL 32 ? 1 'BINDING SITE FOR RESIDUE TL A 32' AC9 Software A TL 33 ? 1 'BINDING SITE FOR RESIDUE TL A 33' BC1 Software B TL 34 ? 2 'BINDING SITE FOR RESIDUE TL B 34' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DG A 12 ? DG A 12 . ? 1_555 ? 2 AC1 5 HOH M . ? HOH A 42 . ? 1_555 ? 3 AC1 5 DC B 1 ? DC B 13 . ? 1_555 ? 4 AC1 5 DG B 10 ? DG B 22 . ? 2_544 ? 5 AC1 5 TL J . ? TL B 28 . ? 1_555 ? 6 AC2 5 DC B 3 ? DC B 15 . ? 1_555 ? 7 AC2 5 DG B 4 ? DG B 16 . ? 1_555 ? 8 AC2 5 DA B 5 ? DA B 17 . ? 1_555 ? 9 AC2 5 TL L . ? TL B 34 . ? 1_555 ? 10 AC2 5 HOH N . ? HOH B 52 . ? 1_555 ? 11 AC3 4 DA A 5 ? DA A 5 . ? 2_444 ? 12 AC3 4 DG A 12 ? DG A 12 . ? 1_555 ? 13 AC3 4 HOH M . ? HOH A 38 . ? 1_555 ? 14 AC3 4 HOH M . ? HOH A 71 . ? 1_555 ? 15 AC4 1 SPM C . ? SPM A 25 . ? 1_555 ? 16 AC5 5 DG A 10 ? DG A 10 . ? 1_555 ? 17 AC5 5 DC A 11 ? DC A 11 . ? 1_555 ? 18 AC5 5 HOH M . ? HOH A 48 . ? 1_555 ? 19 AC5 5 DG B 4 ? DG B 16 . ? 1_555 ? 20 AC5 5 HOH N . ? HOH B 55 . ? 2_444 ? 21 AC6 6 ZDU A 7 ? ZDU A 7 . ? 1_555 ? 22 AC6 6 ZDU A 8 ? ZDU A 8 . ? 1_555 ? 23 AC6 6 HOH M . ? HOH A 44 . ? 1_555 ? 24 AC6 6 ZDU B 7 ? ZDU B 19 . ? 1_555 ? 25 AC6 6 ZDU B 8 ? ZDU B 20 . ? 1_555 ? 26 AC6 6 HOH N . ? HOH B 40 . ? 1_555 ? 27 AC7 3 HOH M . ? HOH A 39 . ? 1_555 ? 28 AC7 3 HOH M . ? HOH A 106 . ? 1_555 ? 29 AC7 3 DC B 9 ? DC B 21 . ? 1_555 ? 30 AC8 1 DA A 6 ? DA A 6 . ? 1_555 ? 31 AC9 1 ZDU A 8 ? ZDU A 8 . ? 1_555 ? 32 BC1 2 SPM I . ? SPM B 26 . ? 1_555 ? 33 BC1 2 HOH N . ? HOH B 57 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 A ZDU 7 ? ? O A HOH 86 ? ? 2.05 2 1 O A HOH 64 ? ? O A HOH 86 ? ? 2.09 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 10 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 10 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 10 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 97.16 _pdbx_validate_rmsd_angle.angle_target_value 102.40 _pdbx_validate_rmsd_angle.angle_deviation -5.24 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.80 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 9 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.057 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ZDU 7 A ZDU 7 ? DU ? 2 A ZDU 8 A ZDU 8 ? DU ? 3 B ZDU 7 B ZDU 19 ? DU ? 4 B ZDU 8 B ZDU 20 ? DU ? # _pdbx_phasing_MR.entry_id 1Z5T _pdbx_phasing_MR.method_rotation direct _pdbx_phasing_MR.method_translation general _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 0.709 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.000 _pdbx_phasing_MR.d_res_low_rotation 15.000 _pdbx_phasing_MR.d_res_high_translation 3.000 _pdbx_phasing_MR.d_res_low_translation 15.000 _pdbx_phasing_MR.packing 0.423 _pdbx_phasing_MR.reflns_percent_rotation 95.700 _pdbx_phasing_MR.reflns_percent_translation 95.700 _pdbx_phasing_MR.sigma_F_rotation 0.000 _pdbx_phasing_MR.sigma_F_translation 0.000 _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 SPM N1 N N N 111 SPM C2 C N N 112 SPM C3 C N N 113 SPM C4 C N N 114 SPM N5 N N N 115 SPM C6 C N N 116 SPM C7 C N N 117 SPM C8 C N N 118 SPM C9 C N N 119 SPM N10 N N N 120 SPM C11 C N N 121 SPM C12 C N N 122 SPM C13 C N N 123 SPM N14 N N N 124 SPM HN11 H N N 125 SPM HN12 H N N 126 SPM H21 H N N 127 SPM H22 H N N 128 SPM H31 H N N 129 SPM H32 H N N 130 SPM H41 H N N 131 SPM H42 H N N 132 SPM HN5 H N N 133 SPM H61 H N N 134 SPM H62 H N N 135 SPM H71 H N N 136 SPM H72 H N N 137 SPM H81 H N N 138 SPM H82 H N N 139 SPM H91 H N N 140 SPM H92 H N N 141 SPM HN0 H N N 142 SPM H111 H N N 143 SPM H112 H N N 144 SPM H121 H N N 145 SPM H122 H N N 146 SPM H131 H N N 147 SPM H132 H N N 148 SPM HN41 H N N 149 SPM HN42 H N N 150 TL TL TL N N 151 ZDU P P N N 152 ZDU OP1 O N N 153 ZDU OP2 O N N 154 ZDU "O5'" O N N 155 ZDU N1 N N N 156 ZDU C6 C N N 157 ZDU C2 C N N 158 ZDU O2 O N N 159 ZDU N3 N N N 160 ZDU C4 C N N 161 ZDU O4 O N N 162 ZDU C5 C N N 163 ZDU C5A C N N 164 ZDU C5B C N N 165 ZDU C5G C N N 166 ZDU N5D N N N 167 ZDU "C2'" C N N 168 ZDU "C5'" C N N 169 ZDU "C4'" C N R 170 ZDU "O4'" O N N 171 ZDU "C1'" C N R 172 ZDU "C3'" C N S 173 ZDU "O3'" O N N 174 ZDU OP3 O N N 175 ZDU HOP2 H N N 176 ZDU H6 H N N 177 ZDU HN3 H N N 178 ZDU H5A1 H N N 179 ZDU H5A2 H N N 180 ZDU H5B1 H N N 181 ZDU H5B2 H N N 182 ZDU H5G1 H N N 183 ZDU H5G2 H N N 184 ZDU H5D1 H N N 185 ZDU H5D2 H N N 186 ZDU "H2'" H N N 187 ZDU "H2''" H N N 188 ZDU "H5'" H N N 189 ZDU "H5''" H N N 190 ZDU "H4'" H N N 191 ZDU "H1'" H N N 192 ZDU "H3'" H N N 193 ZDU "HO3'" H N N 194 ZDU HOP3 H N N 195 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 SPM N1 C2 sing N N 115 SPM N1 HN11 sing N N 116 SPM N1 HN12 sing N N 117 SPM C2 C3 sing N N 118 SPM C2 H21 sing N N 119 SPM C2 H22 sing N N 120 SPM C3 C4 sing N N 121 SPM C3 H31 sing N N 122 SPM C3 H32 sing N N 123 SPM C4 N5 sing N N 124 SPM C4 H41 sing N N 125 SPM C4 H42 sing N N 126 SPM N5 C6 sing N N 127 SPM N5 HN5 sing N N 128 SPM C6 C7 sing N N 129 SPM C6 H61 sing N N 130 SPM C6 H62 sing N N 131 SPM C7 C8 sing N N 132 SPM C7 H71 sing N N 133 SPM C7 H72 sing N N 134 SPM C8 C9 sing N N 135 SPM C8 H81 sing N N 136 SPM C8 H82 sing N N 137 SPM C9 N10 sing N N 138 SPM C9 H91 sing N N 139 SPM C9 H92 sing N N 140 SPM N10 C11 sing N N 141 SPM N10 HN0 sing N N 142 SPM C11 C12 sing N N 143 SPM C11 H111 sing N N 144 SPM C11 H112 sing N N 145 SPM C12 C13 sing N N 146 SPM C12 H121 sing N N 147 SPM C12 H122 sing N N 148 SPM C13 N14 sing N N 149 SPM C13 H131 sing N N 150 SPM C13 H132 sing N N 151 SPM N14 HN41 sing N N 152 SPM N14 HN42 sing N N 153 ZDU P OP1 doub N N 154 ZDU P OP2 sing N N 155 ZDU P "O5'" sing N N 156 ZDU P OP3 sing N N 157 ZDU OP2 HOP2 sing N N 158 ZDU "O5'" "C5'" sing N N 159 ZDU N1 C6 sing N N 160 ZDU N1 C2 sing N N 161 ZDU N1 "C1'" sing N N 162 ZDU C6 C5 doub N N 163 ZDU C6 H6 sing N N 164 ZDU C2 O2 doub N N 165 ZDU C2 N3 sing N N 166 ZDU N3 C4 sing N N 167 ZDU N3 HN3 sing N N 168 ZDU C4 O4 doub N N 169 ZDU C4 C5 sing N N 170 ZDU C5 C5A sing N N 171 ZDU C5A C5B sing N N 172 ZDU C5A H5A1 sing N N 173 ZDU C5A H5A2 sing N N 174 ZDU C5B C5G sing N N 175 ZDU C5B H5B1 sing N N 176 ZDU C5B H5B2 sing N N 177 ZDU C5G N5D sing N N 178 ZDU C5G H5G1 sing N N 179 ZDU C5G H5G2 sing N N 180 ZDU N5D H5D1 sing N N 181 ZDU N5D H5D2 sing N N 182 ZDU "C2'" "C1'" sing N N 183 ZDU "C2'" "C3'" sing N N 184 ZDU "C2'" "H2'" sing N N 185 ZDU "C2'" "H2''" sing N N 186 ZDU "C5'" "C4'" sing N N 187 ZDU "C5'" "H5'" sing N N 188 ZDU "C5'" "H5''" sing N N 189 ZDU "C4'" "O4'" sing N N 190 ZDU "C4'" "C3'" sing N N 191 ZDU "C4'" "H4'" sing N N 192 ZDU "O4'" "C1'" sing N N 193 ZDU "C1'" "H1'" sing N N 194 ZDU "C3'" "O3'" sing N N 195 ZDU "C3'" "H3'" sing N N 196 ZDU "O3'" "HO3'" sing N N 197 ZDU OP3 HOP3 sing N N 198 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1Z5T 'double helix' 1Z5T 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.363 -0.164 0.080 4.723 -11.331 0.839 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.217 -0.279 0.074 1.384 -7.109 -4.837 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.023 -0.178 0.076 0.230 -10.394 -1.750 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.362 -0.169 0.073 10.053 -12.287 -0.127 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B ZDU 8 1_555 0.077 -0.099 -0.005 4.986 -14.109 2.349 5 A_DA5:ZDU20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B ZDU 7 1_555 -0.084 -0.082 0.161 1.745 -17.331 6.894 6 A_DA6:ZDU19_B A 6 ? B 19 ? 20 1 1 A ZDU 7 1_555 B DA 6 1_555 0.034 -0.056 0.119 -1.277 -16.010 5.352 7 A_ZDU7:DA18_B A 7 ? B 18 ? 20 1 1 A ZDU 8 1_555 B DA 5 1_555 -0.019 -0.088 -0.060 -1.024 -12.942 4.884 8 A_ZDU8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.299 -0.120 0.118 -9.933 -13.047 -0.279 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.186 -0.171 0.363 4.194 -7.400 0.675 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.067 -0.164 0.179 3.076 -16.880 -2.683 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.304 -0.300 0.026 6.870 -6.206 -4.158 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.930 -0.147 3.393 -3.139 1.996 35.163 -0.551 1.047 3.447 3.292 5.178 35.353 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.457 -0.172 3.339 1.380 1.809 35.386 -0.554 -0.543 3.341 2.972 -2.268 35.456 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.356 0.702 3.187 0.823 11.499 29.662 -0.856 0.804 3.220 21.468 -1.537 31.777 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B ZDU 8 1_555 0.287 -0.181 3.408 1.285 1.764 34.777 -0.582 -0.277 3.403 2.948 -2.147 34.844 4 AA_DG4DA5:ZDU20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B ZDU 8 1_555 A DA 6 1_555 B ZDU 7 1_555 -0.020 -0.073 3.275 -2.319 -1.058 39.825 0.015 -0.238 3.272 -1.551 3.401 39.903 5 AA_DA5DA6:ZDU19ZDU20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B ZDU 7 1_555 A ZDU 7 1_555 B DA 6 1_555 -0.010 -0.598 3.297 0.071 -1.817 32.538 -0.745 0.030 3.325 -3.240 -0.127 32.587 6 AA_DA6ZDU7:DA18ZDU19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A ZDU 7 1_555 B DA 6 1_555 A ZDU 8 1_555 B DA 5 1_555 -0.112 -0.269 3.228 2.035 -2.933 35.724 -0.022 0.470 3.229 -4.767 -3.307 35.896 7 AA_ZDU7ZDU8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A ZDU 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.172 -0.145 3.474 -0.006 -2.685 42.197 0.092 0.238 3.477 -3.726 0.009 42.278 8 AA_ZDU8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.596 0.618 3.038 -2.656 2.219 27.069 0.797 -1.878 3.007 4.716 5.644 27.285 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.416 0.511 3.341 -1.318 -7.136 42.552 1.407 1.795 3.259 -9.748 1.800 43.138 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.101 0.739 3.324 3.527 1.192 34.185 1.057 -1.291 3.440 2.020 -5.978 34.381 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _pdbx_initial_refinement_model.accession_code 355D _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'NDB entery BDL084' # _atom_sites.entry_id 1Z5T _atom_sites.fract_transf_matrix[1][1] 0.04001 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.02436 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01507 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P TL # loop_