HEADER TRANSCRIPTION/TRANSFERASE 06-APR-05 1ZAF TITLE CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED WITH 3-BROMO-6- TITLE 2 HYDROXY-2-(4-HYDROXY-PHENYL)-INDEN-1-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR BETA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ER-BETA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: NCOA-1, STEROID RECEPTOR COACTIVATOR-1, SRC-1, RIP160, HIN-2 COMPND 10 PROTEIN; COMPND 11 EC: 2.3.1.48; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR2, ESTRB, NR3A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE WAS DERIVED FROM STEROID RECEPTOR SOURCE 14 COACTIVATOR-1. KEYWDS ESTROGEN RECEPTOR, ESTROGEN RECEPTOR BETA, ER-BETA, ER, ESTROGEN, KEYWDS 2 NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, AGONIST, TRANSCRIPTION- KEYWDS 3 TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.E.MCDEVITT,M.S.MALAMAS,E.S.MANAS,R.J.UNWALLA,Z.B.XU,C.P.MILLER, AUTHOR 2 H.A.HARRIS REVDAT 3 14-FEB-24 1ZAF 1 REMARK SEQADV REVDAT 2 24-FEB-09 1ZAF 1 VERSN REVDAT 1 11-APR-06 1ZAF 0 JRNL AUTH R.E.MCDEVITT,M.S.MALAMAS,E.S.MANAS,R.J.UNWALLA,Z.B.XU, JRNL AUTH 2 C.P.MILLER,H.A.HARRIS JRNL TITL ESTROGEN RECEPTOR LIGANDS: DESIGN AND SYNTHESIS OF NEW JRNL TITL 2 2-ARYLINDENE-1-ONES JRNL REF BIOORG.MED.CHEM.LETT. V. 15 3137 2005 JRNL REFN ISSN 0960-894X JRNL PMID 15876535 JRNL DOI 10.1016/J.BMCL.2005.04.013 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2465802.670 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 23329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1136 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3462 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 171 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : 7.38000 REMARK 3 B33 (A**2) : -7.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.820 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.400 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.140 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.710 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 38.94 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : 789.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : 789.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2 REMARK 200 MONOCHROMATOR : 0.9 REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23329 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : 0.34800 REMARK 200 FOR SHELL : 3.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 0.2M MG ACETATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.14050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.66700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.60650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.66700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.14050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.60650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 411 REMARK 465 PRO A 412 REMARK 465 LEU A 413 REMARK 465 VAL A 414 REMARK 465 THR A 415 REMARK 465 ALA A 416 REMARK 465 THR A 417 REMARK 465 GLN A 418 REMARK 465 ASP A 419 REMARK 465 ALA A 420 REMARK 465 TYR B 411 REMARK 465 PRO B 412 REMARK 465 LEU B 413 REMARK 465 VAL B 414 REMARK 465 THR B 415 REMARK 465 ALA B 416 REMARK 465 THR B 417 REMARK 465 GLN B 418 REMARK 465 ASP B 419 REMARK 465 ALA B 420 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C SER D 603 CA HIS D 604 1.78 REMARK 500 O ALA A 287 O PRO A 288 1.79 REMARK 500 O ILE A 282 O HOH A 122 1.92 REMARK 500 ND1 HIS D 604 OE1 GLN D 608 2.01 REMARK 500 N LEU A 263 O HOH A 158 2.05 REMARK 500 N GLY B 372 O HOH B 152 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER B 286 O HOH B 53 4555 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 351 CD PRO A 351 N -0.087 REMARK 500 SER A 422 CA SER A 422 CB 0.098 REMARK 500 GLY C 602 N GLY C 602 CA 0.112 REMARK 500 GLY C 602 CA GLY C 602 C 0.128 REMARK 500 SER C 603 N SER C 603 CA -0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 282 CB - CG1 - CD1 ANGL. DEV. = -18.2 DEGREES REMARK 500 ARG B 424 CD - NE - CZ ANGL. DEV. = -24.4 DEGREES REMARK 500 ARG B 424 NE - CZ - NH1 ANGL. DEV. = -15.0 DEGREES REMARK 500 ARG B 424 NE - CZ - NH2 ANGL. DEV. = 11.7 DEGREES REMARK 500 SER C 603 C - N - CA ANGL. DEV. = 19.7 DEGREES REMARK 500 SER C 603 N - CA - C ANGL. DEV. = -33.0 DEGREES REMARK 500 SER C 603 CA - C - N ANGL. DEV. = -17.3 DEGREES REMARK 500 SER C 603 O - C - N ANGL. DEV. = 10.8 DEGREES REMARK 500 HIS C 604 N - CA - CB ANGL. DEV. = -24.8 DEGREES REMARK 500 HIS C 604 N - CA - C ANGL. DEV. = 31.6 DEGREES REMARK 500 HIS D 604 C - N - CA ANGL. DEV. = -43.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 283 85.68 52.28 REMARK 500 ARG A 284 113.08 62.59 REMARK 500 SER A 286 161.51 -32.72 REMARK 500 ALA A 287 108.46 70.06 REMARK 500 PRO A 288 159.20 -44.46 REMARK 500 THR A 290 -169.48 -117.81 REMARK 500 LEU A 360 89.16 -158.88 REMARK 500 PRO A 486 153.61 -44.78 REMARK 500 ASP B 349 33.71 -94.67 REMARK 500 HIS B 350 74.87 -151.97 REMARK 500 SER B 408 31.87 -78.69 REMARK 500 ALA B 409 43.76 -60.50 REMARK 500 ASP B 489 -132.87 47.94 REMARK 500 SER C 603 176.95 79.77 REMARK 500 SER D 603 44.05 -158.64 REMARK 500 HIS D 604 -75.67 -123.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 424 0.10 SIDE CHAIN REMARK 500 TYR B 488 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER C 603 10.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 789 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 789 B 202 DBREF 1ZAF A 263 500 UNP Q92731 ESR2_HUMAN 263 500 DBREF 1ZAF B 263 500 UNP Q92731 ESR2_HUMAN 263 500 DBREF 1ZAF C 603 613 UNP Q15788 NCO1_HUMAN 630 640 DBREF 1ZAF D 603 613 UNP Q15788 NCO1_HUMAN 630 640 SEQADV 1ZAF ALA A 409 UNP Q92731 SER 409 CONFLICT SEQADV 1ZAF ALA B 409 UNP Q92731 SER 409 CONFLICT SEQADV 1ZAF SER C 601 UNP Q15788 CLONING ARTIFACT SEQADV 1ZAF GLY C 602 UNP Q15788 CLONING ARTIFACT SEQADV 1ZAF SER D 601 UNP Q15788 CLONING ARTIFACT SEQADV 1ZAF GLY D 602 UNP Q15788 CLONING ARTIFACT SEQRES 1 A 238 LEU SER PRO GLU GLN LEU VAL LEU THR LEU LEU GLU ALA SEQRES 2 A 238 GLU PRO PRO HIS VAL LEU ILE SER ARG PRO SER ALA PRO SEQRES 3 A 238 PHE THR GLU ALA SER MET MET MET SER LEU THR LYS LEU SEQRES 4 A 238 ALA ASP LYS GLU LEU VAL HIS MET ILE SER TRP ALA LYS SEQRES 5 A 238 LYS ILE PRO GLY PHE VAL GLU LEU SER LEU PHE ASP GLN SEQRES 6 A 238 VAL ARG LEU LEU GLU SER CYS TRP MET GLU VAL LEU MET SEQRES 7 A 238 MET GLY LEU MET TRP ARG SER ILE ASP HIS PRO GLY LYS SEQRES 8 A 238 LEU ILE PHE ALA PRO ASP LEU VAL LEU ASP ARG ASP GLU SEQRES 9 A 238 GLY LYS CYS VAL GLU GLY ILE LEU GLU ILE PHE ASP MET SEQRES 10 A 238 LEU LEU ALA THR THR SER ARG PHE ARG GLU LEU LYS LEU SEQRES 11 A 238 GLN HIS LYS GLU TYR LEU CYS VAL LYS ALA MET ILE LEU SEQRES 12 A 238 LEU ASN SER ALA MET TYR PRO LEU VAL THR ALA THR GLN SEQRES 13 A 238 ASP ALA ASP SER SER ARG LYS LEU ALA HIS LEU LEU ASN SEQRES 14 A 238 ALA VAL THR ASP ALA LEU VAL TRP VAL ILE ALA LYS SER SEQRES 15 A 238 GLY ILE SER SER GLN GLN GLN SER MET ARG LEU ALA ASN SEQRES 16 A 238 LEU LEU MET LEU LEU SER HIS VAL ARG HIS ALA SER ASN SEQRES 17 A 238 LYS GLY MET GLU HIS LEU LEU ASN MET LYS CYS LYS ASN SEQRES 18 A 238 VAL VAL PRO VAL TYR ASP LEU LEU LEU GLU MET LEU ASN SEQRES 19 A 238 ALA HIS VAL LEU SEQRES 1 B 238 LEU SER PRO GLU GLN LEU VAL LEU THR LEU LEU GLU ALA SEQRES 2 B 238 GLU PRO PRO HIS VAL LEU ILE SER ARG PRO SER ALA PRO SEQRES 3 B 238 PHE THR GLU ALA SER MET MET MET SER LEU THR LYS LEU SEQRES 4 B 238 ALA ASP LYS GLU LEU VAL HIS MET ILE SER TRP ALA LYS SEQRES 5 B 238 LYS ILE PRO GLY PHE VAL GLU LEU SER LEU PHE ASP GLN SEQRES 6 B 238 VAL ARG LEU LEU GLU SER CYS TRP MET GLU VAL LEU MET SEQRES 7 B 238 MET GLY LEU MET TRP ARG SER ILE ASP HIS PRO GLY LYS SEQRES 8 B 238 LEU ILE PHE ALA PRO ASP LEU VAL LEU ASP ARG ASP GLU SEQRES 9 B 238 GLY LYS CYS VAL GLU GLY ILE LEU GLU ILE PHE ASP MET SEQRES 10 B 238 LEU LEU ALA THR THR SER ARG PHE ARG GLU LEU LYS LEU SEQRES 11 B 238 GLN HIS LYS GLU TYR LEU CYS VAL LYS ALA MET ILE LEU SEQRES 12 B 238 LEU ASN SER ALA MET TYR PRO LEU VAL THR ALA THR GLN SEQRES 13 B 238 ASP ALA ASP SER SER ARG LYS LEU ALA HIS LEU LEU ASN SEQRES 14 B 238 ALA VAL THR ASP ALA LEU VAL TRP VAL ILE ALA LYS SER SEQRES 15 B 238 GLY ILE SER SER GLN GLN GLN SER MET ARG LEU ALA ASN SEQRES 16 B 238 LEU LEU MET LEU LEU SER HIS VAL ARG HIS ALA SER ASN SEQRES 17 B 238 LYS GLY MET GLU HIS LEU LEU ASN MET LYS CYS LYS ASN SEQRES 18 B 238 VAL VAL PRO VAL TYR ASP LEU LEU LEU GLU MET LEU ASN SEQRES 19 B 238 ALA HIS VAL LEU SEQRES 1 C 13 SER GLY SER HIS LYS LEU VAL GLN LEU LEU THR THR THR SEQRES 1 D 13 SER GLY SER HIS LYS LEU VAL GLN LEU LEU THR THR THR HET 789 A 201 19 HET 789 B 202 19 HETNAM 789 3-BROMO-6-HYDROXY-2-(4-HYDROXYPHENYL)-1H-INDEN-1-ONE FORMUL 5 789 2(C15 H9 BR O3) FORMUL 7 HOH *167(H2 O) HELIX 1 1 SER A 264 GLU A 276 1 13 HELIX 2 2 THR A 290 LYS A 315 1 26 HELIX 3 3 GLY A 318 LEU A 322 5 5 HELIX 4 4 SER A 323 ILE A 348 1 26 HELIX 5 5 GLY A 372 LYS A 391 1 20 HELIX 6 6 GLN A 393 ASN A 407 1 15 HELIX 7 7 ASP A 421 SER A 444 1 24 HELIX 8 8 SER A 447 LEU A 461 1 15 HELIX 9 9 LEU A 461 LYS A 482 1 22 HELIX 10 10 TYR A 488 LEU A 500 1 13 HELIX 11 11 SER B 264 GLU B 276 1 13 HELIX 12 12 THR B 290 LYS B 315 1 26 HELIX 13 13 GLY B 318 LEU B 322 5 5 HELIX 14 14 SER B 323 ILE B 348 1 26 HELIX 15 15 ASP B 365 CYS B 369 5 5 HELIX 16 16 GLY B 372 LEU B 390 1 19 HELIX 17 17 GLN B 393 SER B 408 1 16 HELIX 18 18 SER B 422 LYS B 443 1 22 HELIX 19 19 SER B 447 MET B 460 1 14 HELIX 20 20 LEU B 461 LYS B 482 1 22 HELIX 21 21 TYR B 488 ALA B 497 1 10 HELIX 22 22 HIS C 604 THR C 611 1 8 HELIX 23 23 HIS D 604 THR D 612 1 9 SHEET 1 A 2 LEU A 354 ALA A 357 0 SHEET 2 A 2 LEU A 360 LEU A 362 -1 O LEU A 360 N ALA A 357 SHEET 1 B 2 LYS B 353 ALA B 357 0 SHEET 2 B 2 LEU B 360 ASP B 363 -1 O LEU B 360 N ALA B 357 SITE 1 AC1 10 HOH A 1 MET A 295 LEU A 298 ALA A 302 SITE 2 AC1 10 GLU A 305 LEU A 339 ARG A 346 LEU A 380 SITE 3 AC1 10 HIS A 475 LEU A 476 SITE 1 AC2 10 HOH B 2 LEU B 298 LEU B 301 GLU B 305 SITE 2 AC2 10 LEU B 339 ARG B 346 ILE B 373 LEU B 380 SITE 3 AC2 10 HIS B 475 LEU B 476 CRYST1 52.281 89.213 99.334 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019127 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010067 0.00000