data_1ZD6 # _entry.id 1ZD6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZD6 pdb_00001zd6 10.2210/pdb1zd6/pdb RCSB RCSB032591 ? ? WWPDB D_1000032591 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-12 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZD6 _pdbx_database_status.recvd_initial_deposition_date 2005-04-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1f41 'Crystal structure of human wild-type transthyretin' unspecified PDB 1ZCR 'the same protein complexed with IODIDE ION' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hornberg, A.' 1 'Hultdin, U.W.' 2 'Olofsson, A.' 3 'Sauer-Eriksson, A.E.' 4 # _citation.id primary _citation.title 'The effect of iodide and chloride on transthyretin structure and stability' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 9290 _citation.page_last 9299 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15981995 _citation.pdbx_database_id_DOI 10.1021/bi050249z # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hornberg, A.' 1 ? primary 'Hultdin, U.W.' 2 ? primary 'Olofsson, A.' 3 ? primary 'Sauer-Eriksson, A.E.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Transthyretin 13908.557 2 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 6 ? ? ? ? 3 water nat water 18.015 136 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Prealbumin, TBPA, TTR, ATTR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYW KALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_seq_one_letter_code_can ;MGPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYW KALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 PRO n 1 4 THR n 1 5 GLY n 1 6 THR n 1 7 GLY n 1 8 GLU n 1 9 SER n 1 10 LYS n 1 11 CYS n 1 12 PRO n 1 13 LEU n 1 14 MET n 1 15 VAL n 1 16 LYS n 1 17 VAL n 1 18 LEU n 1 19 ASP n 1 20 ALA n 1 21 VAL n 1 22 ARG n 1 23 GLY n 1 24 SER n 1 25 PRO n 1 26 ALA n 1 27 ILE n 1 28 ASN n 1 29 VAL n 1 30 ALA n 1 31 VAL n 1 32 HIS n 1 33 VAL n 1 34 PHE n 1 35 ARG n 1 36 LYS n 1 37 ALA n 1 38 ALA n 1 39 ASP n 1 40 ASP n 1 41 THR n 1 42 TRP n 1 43 GLU n 1 44 PRO n 1 45 PHE n 1 46 ALA n 1 47 SER n 1 48 GLY n 1 49 LYS n 1 50 THR n 1 51 SER n 1 52 GLU n 1 53 SER n 1 54 GLY n 1 55 GLU n 1 56 LEU n 1 57 HIS n 1 58 GLY n 1 59 LEU n 1 60 THR n 1 61 THR n 1 62 GLU n 1 63 GLU n 1 64 GLU n 1 65 PHE n 1 66 VAL n 1 67 GLU n 1 68 GLY n 1 69 ILE n 1 70 TYR n 1 71 LYS n 1 72 VAL n 1 73 GLU n 1 74 ILE n 1 75 ASP n 1 76 THR n 1 77 LYS n 1 78 SER n 1 79 TYR n 1 80 TRP n 1 81 LYS n 1 82 ALA n 1 83 LEU n 1 84 GLY n 1 85 ILE n 1 86 SER n 1 87 PRO n 1 88 PHE n 1 89 HIS n 1 90 GLU n 1 91 HIS n 1 92 ALA n 1 93 GLU n 1 94 VAL n 1 95 VAL n 1 96 PHE n 1 97 THR n 1 98 ALA n 1 99 ASN n 1 100 ASP n 1 101 SER n 1 102 GLY n 1 103 PRO n 1 104 ARG n 1 105 ARG n 1 106 TYR n 1 107 THR n 1 108 ILE n 1 109 ALA n 1 110 ALA n 1 111 LEU n 1 112 LEU n 1 113 SER n 1 114 PRO n 1 115 TYR n 1 116 SER n 1 117 TYR n 1 118 SER n 1 119 THR n 1 120 THR n 1 121 ALA n 1 122 VAL n 1 123 VAL n 1 124 THR n 1 125 ASN n 1 126 PRO n 1 127 LYS n 1 128 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name Pet3a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -1 ? ? ? A . n A 1 2 GLY 2 1 ? ? ? A . n A 1 3 PRO 3 2 ? ? ? A . n A 1 4 THR 4 3 ? ? ? A . n A 1 5 GLY 5 4 ? ? ? A . n A 1 6 THR 6 5 ? ? ? A . n A 1 7 GLY 7 6 ? ? ? A . n A 1 8 GLU 8 7 ? ? ? A . n A 1 9 SER 9 8 ? ? ? A . n A 1 10 LYS 10 9 ? ? ? A . n A 1 11 CYS 11 10 10 CYS CYS A . n A 1 12 PRO 12 11 11 PRO PRO A . n A 1 13 LEU 13 12 12 LEU LEU A . n A 1 14 MET 14 13 13 MET MET A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 LEU 18 17 17 LEU LEU A . n A 1 19 ASP 19 18 18 ASP ASP A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 VAL 21 20 20 VAL VAL A . n A 1 22 ARG 22 21 21 ARG ARG A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 PRO 25 24 24 PRO PRO A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ILE 27 26 26 ILE ILE A . n A 1 28 ASN 28 27 27 ASN ASN A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 ALA 30 29 29 ALA ALA A . n A 1 31 VAL 31 30 30 VAL VAL A . n A 1 32 HIS 32 31 31 HIS HIS A . n A 1 33 VAL 33 32 32 VAL VAL A . n A 1 34 PHE 34 33 33 PHE PHE A . n A 1 35 ARG 35 34 34 ARG ARG A . n A 1 36 LYS 36 35 35 LYS LYS A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 ALA 38 37 37 ALA ALA A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 ASP 40 39 39 ASP ASP A . n A 1 41 THR 41 40 40 THR THR A . n A 1 42 TRP 42 41 41 TRP TRP A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 PRO 44 43 43 PRO PRO A . n A 1 45 PHE 45 44 44 PHE PHE A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 SER 47 46 46 SER SER A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 LYS 49 48 48 LYS LYS A . n A 1 50 THR 50 49 49 THR THR A . n A 1 51 SER 51 50 50 SER SER A . n A 1 52 GLU 52 51 51 GLU GLU A . n A 1 53 SER 53 52 52 SER SER A . n A 1 54 GLY 54 53 53 GLY GLY A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 HIS 57 56 56 HIS HIS A . n A 1 58 GLY 58 57 57 GLY GLY A . n A 1 59 LEU 59 58 58 LEU LEU A . n A 1 60 THR 60 59 59 THR THR A . n A 1 61 THR 61 60 60 THR THR A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 GLU 64 63 63 GLU GLU A . n A 1 65 PHE 65 64 64 PHE PHE A . n A 1 66 VAL 66 65 65 VAL VAL A . n A 1 67 GLU 67 66 66 GLU GLU A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 ILE 69 68 68 ILE ILE A . n A 1 70 TYR 70 69 69 TYR TYR A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 VAL 72 71 71 VAL VAL A . n A 1 73 GLU 73 72 72 GLU GLU A . n A 1 74 ILE 74 73 73 ILE ILE A . n A 1 75 ASP 75 74 74 ASP ASP A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 LYS 77 76 76 LYS LYS A . n A 1 78 SER 78 77 77 SER SER A . n A 1 79 TYR 79 78 78 TYR TYR A . n A 1 80 TRP 80 79 79 TRP TRP A . n A 1 81 LYS 81 80 80 LYS LYS A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 SER 86 85 85 SER SER A . n A 1 87 PRO 87 86 86 PRO PRO A . n A 1 88 PHE 88 87 87 PHE PHE A . n A 1 89 HIS 89 88 88 HIS HIS A . n A 1 90 GLU 90 89 89 GLU GLU A . n A 1 91 HIS 91 90 90 HIS HIS A . n A 1 92 ALA 92 91 91 ALA ALA A . n A 1 93 GLU 93 92 92 GLU GLU A . n A 1 94 VAL 94 93 93 VAL VAL A . n A 1 95 VAL 95 94 94 VAL VAL A . n A 1 96 PHE 96 95 95 PHE PHE A . n A 1 97 THR 97 96 96 THR THR A . n A 1 98 ALA 98 97 97 ALA ALA A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 SER 101 100 100 SER SER A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 PRO 103 102 102 PRO PRO A . n A 1 104 ARG 104 103 103 ARG ARG A . n A 1 105 ARG 105 104 104 ARG ARG A . n A 1 106 TYR 106 105 105 TYR TYR A . n A 1 107 THR 107 106 106 THR THR A . n A 1 108 ILE 108 107 107 ILE ILE A . n A 1 109 ALA 109 108 108 ALA ALA A . n A 1 110 ALA 110 109 109 ALA ALA A . n A 1 111 LEU 111 110 110 LEU LEU A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 SER 113 112 112 SER SER A . n A 1 114 PRO 114 113 113 PRO PRO A . n A 1 115 TYR 115 114 114 TYR TYR A . n A 1 116 SER 116 115 115 SER SER A . n A 1 117 TYR 117 116 116 TYR TYR A . n A 1 118 SER 118 117 117 SER SER A . n A 1 119 THR 119 118 118 THR THR A . n A 1 120 THR 120 119 119 THR THR A . n A 1 121 ALA 121 120 120 ALA ALA A . n A 1 122 VAL 122 121 121 VAL VAL A . n A 1 123 VAL 123 122 122 VAL VAL A . n A 1 124 THR 124 123 123 THR THR A . n A 1 125 ASN 125 124 124 ASN ASN A . n A 1 126 PRO 126 125 125 PRO PRO A . n A 1 127 LYS 127 126 ? ? ? A . n A 1 128 GLU 128 127 ? ? ? A . n B 1 1 MET 1 -1 ? ? ? B . n B 1 2 GLY 2 1 ? ? ? B . n B 1 3 PRO 3 2 ? ? ? B . n B 1 4 THR 4 3 ? ? ? B . n B 1 5 GLY 5 4 ? ? ? B . n B 1 6 THR 6 5 ? ? ? B . n B 1 7 GLY 7 6 ? ? ? B . n B 1 8 GLU 8 7 ? ? ? B . n B 1 9 SER 9 8 ? ? ? B . n B 1 10 LYS 10 9 ? ? ? B . n B 1 11 CYS 11 10 10 CYS CYS B . n B 1 12 PRO 12 11 11 PRO PRO B . n B 1 13 LEU 13 12 12 LEU LEU B . n B 1 14 MET 14 13 13 MET MET B . n B 1 15 VAL 15 14 14 VAL VAL B . n B 1 16 LYS 16 15 15 LYS LYS B . n B 1 17 VAL 17 16 16 VAL VAL B . n B 1 18 LEU 18 17 17 LEU LEU B . n B 1 19 ASP 19 18 18 ASP ASP B . n B 1 20 ALA 20 19 19 ALA ALA B . n B 1 21 VAL 21 20 20 VAL VAL B . n B 1 22 ARG 22 21 21 ARG ARG B . n B 1 23 GLY 23 22 22 GLY GLY B . n B 1 24 SER 24 23 23 SER SER B . n B 1 25 PRO 25 24 24 PRO PRO B . n B 1 26 ALA 26 25 25 ALA ALA B . n B 1 27 ILE 27 26 26 ILE ILE B . n B 1 28 ASN 28 27 27 ASN ASN B . n B 1 29 VAL 29 28 28 VAL VAL B . n B 1 30 ALA 30 29 29 ALA ALA B . n B 1 31 VAL 31 30 30 VAL VAL B . n B 1 32 HIS 32 31 31 HIS HIS B . n B 1 33 VAL 33 32 32 VAL VAL B . n B 1 34 PHE 34 33 33 PHE PHE B . n B 1 35 ARG 35 34 34 ARG ARG B . n B 1 36 LYS 36 35 35 LYS LYS B . n B 1 37 ALA 37 36 36 ALA ALA B . n B 1 38 ALA 38 37 37 ALA ALA B . n B 1 39 ASP 39 38 38 ASP ASP B . n B 1 40 ASP 40 39 39 ASP ASP B . n B 1 41 THR 41 40 40 THR THR B . n B 1 42 TRP 42 41 41 TRP TRP B . n B 1 43 GLU 43 42 42 GLU GLU B . n B 1 44 PRO 44 43 43 PRO PRO B . n B 1 45 PHE 45 44 44 PHE PHE B . n B 1 46 ALA 46 45 45 ALA ALA B . n B 1 47 SER 47 46 46 SER SER B . n B 1 48 GLY 48 47 47 GLY GLY B . n B 1 49 LYS 49 48 48 LYS LYS B . n B 1 50 THR 50 49 49 THR THR B . n B 1 51 SER 51 50 50 SER SER B . n B 1 52 GLU 52 51 51 GLU GLU B . n B 1 53 SER 53 52 52 SER SER B . n B 1 54 GLY 54 53 53 GLY GLY B . n B 1 55 GLU 55 54 54 GLU GLU B . n B 1 56 LEU 56 55 55 LEU LEU B . n B 1 57 HIS 57 56 56 HIS HIS B . n B 1 58 GLY 58 57 57 GLY GLY B . n B 1 59 LEU 59 58 58 LEU LEU B . n B 1 60 THR 60 59 59 THR THR B . n B 1 61 THR 61 60 60 THR THR B . n B 1 62 GLU 62 61 61 GLU GLU B . n B 1 63 GLU 63 62 62 GLU GLU B . n B 1 64 GLU 64 63 63 GLU GLU B . n B 1 65 PHE 65 64 64 PHE PHE B . n B 1 66 VAL 66 65 65 VAL VAL B . n B 1 67 GLU 67 66 66 GLU GLU B . n B 1 68 GLY 68 67 67 GLY GLY B . n B 1 69 ILE 69 68 68 ILE ILE B . n B 1 70 TYR 70 69 69 TYR TYR B . n B 1 71 LYS 71 70 70 LYS LYS B . n B 1 72 VAL 72 71 71 VAL VAL B . n B 1 73 GLU 73 72 72 GLU GLU B . n B 1 74 ILE 74 73 73 ILE ILE B . n B 1 75 ASP 75 74 74 ASP ASP B . n B 1 76 THR 76 75 75 THR THR B . n B 1 77 LYS 77 76 76 LYS LYS B . n B 1 78 SER 78 77 77 SER SER B . n B 1 79 TYR 79 78 78 TYR TYR B . n B 1 80 TRP 80 79 79 TRP TRP B . n B 1 81 LYS 81 80 80 LYS LYS B . n B 1 82 ALA 82 81 81 ALA ALA B . n B 1 83 LEU 83 82 82 LEU LEU B . n B 1 84 GLY 84 83 83 GLY GLY B . n B 1 85 ILE 85 84 84 ILE ILE B . n B 1 86 SER 86 85 85 SER SER B . n B 1 87 PRO 87 86 86 PRO PRO B . n B 1 88 PHE 88 87 87 PHE PHE B . n B 1 89 HIS 89 88 88 HIS HIS B . n B 1 90 GLU 90 89 89 GLU GLU B . n B 1 91 HIS 91 90 90 HIS HIS B . n B 1 92 ALA 92 91 91 ALA ALA B . n B 1 93 GLU 93 92 92 GLU GLU B . n B 1 94 VAL 94 93 93 VAL VAL B . n B 1 95 VAL 95 94 94 VAL VAL B . n B 1 96 PHE 96 95 95 PHE PHE B . n B 1 97 THR 97 96 96 THR THR B . n B 1 98 ALA 98 97 97 ALA ALA B . n B 1 99 ASN 99 98 98 ASN ASN B . n B 1 100 ASP 100 99 99 ASP ASP B . n B 1 101 SER 101 100 100 SER SER B . n B 1 102 GLY 102 101 101 GLY GLY B . n B 1 103 PRO 103 102 102 PRO PRO B . n B 1 104 ARG 104 103 103 ARG ARG B . n B 1 105 ARG 105 104 104 ARG ARG B . n B 1 106 TYR 106 105 105 TYR TYR B . n B 1 107 THR 107 106 106 THR THR B . n B 1 108 ILE 108 107 107 ILE ILE B . n B 1 109 ALA 109 108 108 ALA ALA B . n B 1 110 ALA 110 109 109 ALA ALA B . n B 1 111 LEU 111 110 110 LEU LEU B . n B 1 112 LEU 112 111 111 LEU LEU B . n B 1 113 SER 113 112 112 SER SER B . n B 1 114 PRO 114 113 113 PRO PRO B . n B 1 115 TYR 115 114 114 TYR TYR B . n B 1 116 SER 116 115 115 SER SER B . n B 1 117 TYR 117 116 116 TYR TYR B . n B 1 118 SER 118 117 117 SER SER B . n B 1 119 THR 119 118 118 THR THR B . n B 1 120 THR 120 119 119 THR THR B . n B 1 121 ALA 121 120 120 ALA ALA B . n B 1 122 VAL 122 121 121 VAL VAL B . n B 1 123 VAL 123 122 122 VAL VAL B . n B 1 124 THR 124 123 123 THR THR B . n B 1 125 ASN 125 124 124 ASN ASN B . n B 1 126 PRO 126 125 ? ? ? B . n B 1 127 LYS 127 126 ? ? ? B . n B 1 128 GLU 128 127 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 301 301 CL CL A . D 2 CL 1 302 302 CL CL A . E 2 CL 1 306 306 CL CL A . F 2 CL 1 303 303 CL CL B . G 2 CL 1 304 304 CL CL B . H 2 CL 1 305 305 CL CL B . I 3 HOH 1 307 1 HOH HOH A . I 3 HOH 2 308 2 HOH HOH A . I 3 HOH 3 309 3 HOH HOH A . I 3 HOH 4 310 9 HOH HOH A . I 3 HOH 5 311 10 HOH HOH A . I 3 HOH 6 312 13 HOH HOH A . I 3 HOH 7 313 15 HOH HOH A . I 3 HOH 8 314 19 HOH HOH A . I 3 HOH 9 315 20 HOH HOH A . I 3 HOH 10 316 21 HOH HOH A . I 3 HOH 11 317 23 HOH HOH A . I 3 HOH 12 318 27 HOH HOH A . I 3 HOH 13 319 31 HOH HOH A . I 3 HOH 14 320 32 HOH HOH A . I 3 HOH 15 321 35 HOH HOH A . I 3 HOH 16 322 37 HOH HOH A . I 3 HOH 17 323 39 HOH HOH A . I 3 HOH 18 324 40 HOH HOH A . I 3 HOH 19 325 44 HOH HOH A . I 3 HOH 20 326 46 HOH HOH A . I 3 HOH 21 327 48 HOH HOH A . I 3 HOH 22 328 49 HOH HOH A . I 3 HOH 23 329 51 HOH HOH A . I 3 HOH 24 330 52 HOH HOH A . I 3 HOH 25 331 54 HOH HOH A . I 3 HOH 26 332 56 HOH HOH A . I 3 HOH 27 333 59 HOH HOH A . I 3 HOH 28 334 65 HOH HOH A . I 3 HOH 29 335 66 HOH HOH A . I 3 HOH 30 336 67 HOH HOH A . I 3 HOH 31 337 72 HOH HOH A . I 3 HOH 32 338 77 HOH HOH A . I 3 HOH 33 339 78 HOH HOH A . I 3 HOH 34 340 79 HOH HOH A . I 3 HOH 35 341 87 HOH HOH A . I 3 HOH 36 342 88 HOH HOH A . I 3 HOH 37 343 89 HOH HOH A . I 3 HOH 38 344 91 HOH HOH A . I 3 HOH 39 345 92 HOH HOH A . I 3 HOH 40 346 94 HOH HOH A . I 3 HOH 41 347 95 HOH HOH A . I 3 HOH 42 348 97 HOH HOH A . I 3 HOH 43 349 98 HOH HOH A . I 3 HOH 44 350 103 HOH HOH A . I 3 HOH 45 351 104 HOH HOH A . I 3 HOH 46 352 105 HOH HOH A . I 3 HOH 47 353 107 HOH HOH A . I 3 HOH 48 354 114 HOH HOH A . I 3 HOH 49 355 116 HOH HOH A . I 3 HOH 50 356 123 HOH HOH A . I 3 HOH 51 357 130 HOH HOH A . I 3 HOH 52 358 132 HOH HOH A . I 3 HOH 53 359 134 HOH HOH A . I 3 HOH 54 360 137 HOH HOH A . I 3 HOH 55 361 142 HOH HOH A . I 3 HOH 56 362 144 HOH HOH A . I 3 HOH 57 363 149 HOH HOH A . I 3 HOH 58 364 162 HOH HOH A . I 3 HOH 59 365 163 HOH HOH A . I 3 HOH 60 366 181 HOH HOH A . I 3 HOH 61 367 201 HOH HOH A . I 3 HOH 62 368 202 HOH HOH A . I 3 HOH 63 369 205 HOH HOH A . I 3 HOH 64 370 209 HOH HOH A . I 3 HOH 65 371 215 HOH HOH A . I 3 HOH 66 372 218 HOH HOH A . I 3 HOH 67 373 224 HOH HOH A . I 3 HOH 68 374 227 HOH HOH A . I 3 HOH 69 375 228 HOH HOH A . I 3 HOH 70 376 229 HOH HOH A . I 3 HOH 71 377 232 HOH HOH A . I 3 HOH 72 378 236 HOH HOH A . J 3 HOH 1 306 5 HOH HOH B . J 3 HOH 2 307 6 HOH HOH B . J 3 HOH 3 308 8 HOH HOH B . J 3 HOH 4 309 12 HOH HOH B . J 3 HOH 5 310 14 HOH HOH B . J 3 HOH 6 311 16 HOH HOH B . J 3 HOH 7 312 17 HOH HOH B . J 3 HOH 8 313 18 HOH HOH B . J 3 HOH 9 314 22 HOH HOH B . J 3 HOH 10 315 24 HOH HOH B . J 3 HOH 11 316 29 HOH HOH B . J 3 HOH 12 317 30 HOH HOH B . J 3 HOH 13 318 34 HOH HOH B . J 3 HOH 14 319 41 HOH HOH B . J 3 HOH 15 320 47 HOH HOH B . J 3 HOH 16 321 50 HOH HOH B . J 3 HOH 17 322 57 HOH HOH B . J 3 HOH 18 323 58 HOH HOH B . J 3 HOH 19 324 60 HOH HOH B . J 3 HOH 20 325 61 HOH HOH B . J 3 HOH 21 326 62 HOH HOH B . J 3 HOH 22 327 63 HOH HOH B . J 3 HOH 23 328 64 HOH HOH B . J 3 HOH 24 329 68 HOH HOH B . J 3 HOH 25 330 69 HOH HOH B . J 3 HOH 26 331 70 HOH HOH B . J 3 HOH 27 332 74 HOH HOH B . J 3 HOH 28 333 75 HOH HOH B . J 3 HOH 29 334 76 HOH HOH B . J 3 HOH 30 335 80 HOH HOH B . J 3 HOH 31 336 83 HOH HOH B . J 3 HOH 32 337 84 HOH HOH B . J 3 HOH 33 338 85 HOH HOH B . J 3 HOH 34 339 86 HOH HOH B . J 3 HOH 35 340 90 HOH HOH B . J 3 HOH 36 341 93 HOH HOH B . J 3 HOH 37 342 96 HOH HOH B . J 3 HOH 38 343 102 HOH HOH B . J 3 HOH 39 344 110 HOH HOH B . J 3 HOH 40 345 111 HOH HOH B . J 3 HOH 41 346 113 HOH HOH B . J 3 HOH 42 347 115 HOH HOH B . J 3 HOH 43 348 117 HOH HOH B . J 3 HOH 44 349 118 HOH HOH B . J 3 HOH 45 350 121 HOH HOH B . J 3 HOH 46 351 124 HOH HOH B . J 3 HOH 47 352 126 HOH HOH B . J 3 HOH 48 353 127 HOH HOH B . J 3 HOH 49 354 128 HOH HOH B . J 3 HOH 50 355 129 HOH HOH B . J 3 HOH 51 356 133 HOH HOH B . J 3 HOH 52 357 135 HOH HOH B . J 3 HOH 53 358 140 HOH HOH B . J 3 HOH 54 359 146 HOH HOH B . J 3 HOH 55 360 147 HOH HOH B . J 3 HOH 56 361 150 HOH HOH B . J 3 HOH 57 362 151 HOH HOH B . J 3 HOH 58 363 156 HOH HOH B . J 3 HOH 59 364 160 HOH HOH B . J 3 HOH 60 365 167 HOH HOH B . J 3 HOH 61 366 170 HOH HOH B . J 3 HOH 62 367 214 HOH HOH B . J 3 HOH 63 368 217 HOH HOH B . J 3 HOH 64 369 234 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 1ZD6 _cell.length_a 42.659 _cell.length_b 85.587 _cell.length_c 63.490 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZD6 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1ZD6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_percent_sol 40.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details 'ammonium sulphate, sodium citrate, polyethyleneglycol, sodium chloride, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MACSCIENCE _diffrn_detector.pdbx_collection_date 2002-10-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni Filter, Pt mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ENRAF-NONIUS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1ZD6 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 20 _reflns.number_all 18946 _reflns.number_obs 18946 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.575 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1ZD6 _refine.ls_number_reflns_obs 17967 _refine.ls_number_reflns_all 18946 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.69 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.20063 _refine.ls_R_factor_all 0.21 _refine.ls_R_factor_R_work 0.19953 _refine.ls_R_factor_R_free 0.22141 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 979 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 15.362 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.169 _refine.pdbx_overall_ESU_R_Free 0.141 _refine.overall_SU_ML 0.128 _refine.overall_SU_B 4.255 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1785 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 136 _refine_hist.number_atoms_total 1927 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 19.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.021 ? 1858 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1635 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.177 1.932 ? 2546 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.692 3.000 ? 3808 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 3.393 3.000 ? 237 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.601 15.000 ? 311 'X-RAY DIFFRACTION' ? r_chiral_restr 0.073 0.200 ? 287 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 2086 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 382 'X-RAY DIFFRACTION' ? r_nbd_refined 0.197 0.300 ? 287 'X-RAY DIFFRACTION' ? r_nbd_other 0.202 0.300 ? 1426 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.130 0.500 ? 183 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.025 0.500 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.166 0.300 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.207 0.300 ? 50 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.162 0.500 ? 13 'X-RAY DIFFRACTION' ? r_mcbond_it 0.626 1.500 ? 1166 'X-RAY DIFFRACTION' ? r_mcangle_it 1.208 2.000 ? 1901 'X-RAY DIFFRACTION' ? r_scbond_it 1.610 3.000 ? 692 'X-RAY DIFFRACTION' ? r_scangle_it 2.817 4.500 ? 645 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.number_reflns_R_work 1296 _refine_ls_shell.R_factor_R_work 0.232 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.244 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1ZD6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1ZD6 _struct.title 'Crystal structure of human transthyretin with bound chloride' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZD6 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'transport, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TTHY_HUMAN _struct_ref.pdbx_db_accession P02766 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZD6 A 2 ? 128 ? P02766 21 ? 147 ? 1 127 2 1 1ZD6 B 2 ? 128 ? P02766 21 ? 147 ? 1 127 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1ZD6 MET A 1 ? UNP P02766 ? ? 'initiating methionine' -1 1 2 1ZD6 MET B 1 ? UNP P02766 ? ? 'initiating methionine' -1 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8440 ? 1 MORE -192 ? 1 'SSA (A^2)' 18760 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 42.6590000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The second part of the biological assembly is generated by the two fold axis: -x+1, -y, z' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 75 ? ALA A 82 ? ASP A 74 ALA A 81 1 ? 8 HELX_P HELX_P2 2 ASP B 75 ? LEU B 83 ? ASP B 74 LEU B 82 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 24 ? PRO A 25 ? SER A 23 PRO A 24 A 2 LEU A 13 ? ASP A 19 ? LEU A 12 ASP A 18 A 3 ARG A 105 ? SER A 113 ? ARG A 104 SER A 112 A 4 SER A 116 ? THR A 124 ? SER A 115 THR A 123 A 5 SER B 116 ? THR B 124 ? SER B 115 THR B 123 A 6 ARG B 105 ? SER B 113 ? ARG B 104 SER B 112 A 7 LEU B 13 ? ASP B 19 ? LEU B 12 ASP B 18 A 8 SER B 24 ? PRO B 25 ? SER B 23 PRO B 24 B 1 GLU A 55 ? LEU A 56 ? GLU A 54 LEU A 55 B 2 LEU A 13 ? ASP A 19 ? LEU A 12 ASP A 18 B 3 ARG A 105 ? SER A 113 ? ARG A 104 SER A 112 B 4 SER A 116 ? THR A 124 ? SER A 115 THR A 123 B 5 SER B 116 ? THR B 124 ? SER B 115 THR B 123 B 6 ARG B 105 ? SER B 113 ? ARG B 104 SER B 112 B 7 LEU B 13 ? ASP B 19 ? LEU B 12 ASP B 18 B 8 GLU B 55 ? LEU B 56 ? GLU B 54 LEU B 55 C 1 TRP A 42 ? LYS A 49 ? TRP A 41 LYS A 48 C 2 ALA A 30 ? LYS A 36 ? ALA A 29 LYS A 35 C 3 GLY A 68 ? ILE A 74 ? GLY A 67 ILE A 73 C 4 HIS A 89 ? ALA A 98 ? HIS A 88 ALA A 97 C 5 HIS B 89 ? ALA B 98 ? HIS B 88 ALA B 97 C 6 GLY B 68 ? ILE B 74 ? GLY B 67 ILE B 73 C 7 ALA B 30 ? LYS B 36 ? ALA B 29 LYS B 35 C 8 TRP B 42 ? LYS B 49 ? TRP B 41 LYS B 48 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 24 ? O SER A 23 N ASP A 19 ? N ASP A 18 A 2 3 N LEU A 18 ? N LEU A 17 O LEU A 112 ? O LEU A 111 A 3 4 N ALA A 109 ? N ALA A 108 O THR A 120 ? O THR A 119 A 4 5 N THR A 119 ? N THR A 118 O TYR B 117 ? O TYR B 116 A 5 6 O THR B 120 ? O THR B 119 N ALA B 109 ? N ALA B 108 A 6 7 O ILE B 108 ? O ILE B 107 N MET B 14 ? N MET B 13 A 7 8 N ASP B 19 ? N ASP B 18 O SER B 24 ? O SER B 23 B 1 2 O LEU A 56 ? O LEU A 55 N VAL A 15 ? N VAL A 14 B 2 3 N LEU A 18 ? N LEU A 17 O LEU A 112 ? O LEU A 111 B 3 4 N ALA A 109 ? N ALA A 108 O THR A 120 ? O THR A 119 B 4 5 N THR A 119 ? N THR A 118 O TYR B 117 ? O TYR B 116 B 5 6 O THR B 120 ? O THR B 119 N ALA B 109 ? N ALA B 108 B 6 7 O ILE B 108 ? O ILE B 107 N MET B 14 ? N MET B 13 B 7 8 N VAL B 15 ? N VAL B 14 O LEU B 56 ? O LEU B 55 C 1 2 O PHE A 45 ? O PHE A 44 N VAL A 33 ? N VAL A 32 C 2 3 N HIS A 32 ? N HIS A 31 O GLU A 73 ? O GLU A 72 C 3 4 N TYR A 70 ? N TYR A 69 O PHE A 96 ? O PHE A 95 C 4 5 N VAL A 95 ? N VAL A 94 O GLU B 90 ? O GLU B 89 C 5 6 O PHE B 96 ? O PHE B 95 N TYR B 70 ? N TYR B 69 C 6 7 O GLU B 73 ? O GLU B 72 N HIS B 32 ? N HIS B 31 C 7 8 N VAL B 33 ? N VAL B 32 O ALA B 46 ? O ALA B 45 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 301 ? 3 'BINDING SITE FOR RESIDUE CL A 301' AC2 Software A CL 302 ? 2 'BINDING SITE FOR RESIDUE CL A 302' AC3 Software B CL 303 ? 2 'BINDING SITE FOR RESIDUE CL B 303' AC4 Software B CL 304 ? 3 'BINDING SITE FOR RESIDUE CL B 304' AC5 Software B CL 305 ? 1 'BINDING SITE FOR RESIDUE CL B 305' AC6 Software A CL 306 ? 2 'BINDING SITE FOR RESIDUE CL A 306' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 SER A 118 ? SER A 117 . ? 1_555 ? 2 AC1 3 THR A 119 ? THR A 118 . ? 1_555 ? 3 AC1 3 THR A 120 ? THR A 119 . ? 1_555 ? 4 AC2 2 LYS A 16 ? LYS A 15 . ? 1_555 ? 5 AC2 2 VAL A 122 ? VAL A 121 . ? 2_655 ? 6 AC3 2 HIS B 91 ? HIS B 90 . ? 1_555 ? 7 AC3 2 HOH J . ? HOH B 327 . ? 1_555 ? 8 AC4 3 SER B 118 ? SER B 117 . ? 1_555 ? 9 AC4 3 THR B 119 ? THR B 118 . ? 1_555 ? 10 AC4 3 THR B 120 ? THR B 119 . ? 1_555 ? 11 AC5 1 LYS B 16 ? LYS B 15 . ? 1_555 ? 12 AC6 2 HIS A 91 ? HIS A 90 . ? 1_555 ? 13 AC6 2 LYS B 36 ? LYS B 35 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 74 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 74 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 74 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.33 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 6.03 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 81 ? ? -67.92 0.75 2 1 PRO B 102 ? ? -48.99 172.19 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 21.5745 13.0759 25.7889 0.0725 0.0103 0.0886 -0.0038 0.0094 -0.0105 0.9997 0.8488 0.3533 -0.6225 -0.3201 0.1965 -0.0300 -0.0190 0.0618 0.0073 -0.0156 -0.0152 0.0298 0.0273 0.0455 'X-RAY DIFFRACTION' 2 ? refined 19.0117 12.5939 6.0842 0.0825 0.0003 0.0813 -0.0047 0.0079 -0.0018 0.9797 1.2614 0.5120 0.5681 -0.3864 -0.7168 0.0071 0.0188 0.0905 -0.0265 -0.0776 0.0400 0.0527 0.0384 0.0705 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 10 A 11 A 125 A 126 ? 'X-RAY DIFFRACTION' ? 2 2 B 10 B 11 B 124 B 125 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -1 ? A MET 1 2 1 Y 1 A GLY 1 ? A GLY 2 3 1 Y 1 A PRO 2 ? A PRO 3 4 1 Y 1 A THR 3 ? A THR 4 5 1 Y 1 A GLY 4 ? A GLY 5 6 1 Y 1 A THR 5 ? A THR 6 7 1 Y 1 A GLY 6 ? A GLY 7 8 1 Y 1 A GLU 7 ? A GLU 8 9 1 Y 1 A SER 8 ? A SER 9 10 1 Y 1 A LYS 9 ? A LYS 10 11 1 Y 1 A LYS 126 ? A LYS 127 12 1 Y 1 A GLU 127 ? A GLU 128 13 1 Y 1 B MET -1 ? B MET 1 14 1 Y 1 B GLY 1 ? B GLY 2 15 1 Y 1 B PRO 2 ? B PRO 3 16 1 Y 1 B THR 3 ? B THR 4 17 1 Y 1 B GLY 4 ? B GLY 5 18 1 Y 1 B THR 5 ? B THR 6 19 1 Y 1 B GLY 6 ? B GLY 7 20 1 Y 1 B GLU 7 ? B GLU 8 21 1 Y 1 B SER 8 ? B SER 9 22 1 Y 1 B LYS 9 ? B LYS 10 23 1 Y 1 B PRO 125 ? B PRO 126 24 1 Y 1 B LYS 126 ? B LYS 127 25 1 Y 1 B GLU 127 ? B GLU 128 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLU N N N N 89 GLU CA C N S 90 GLU C C N N 91 GLU O O N N 92 GLU CB C N N 93 GLU CG C N N 94 GLU CD C N N 95 GLU OE1 O N N 96 GLU OE2 O N N 97 GLU OXT O N N 98 GLU H H N N 99 GLU H2 H N N 100 GLU HA H N N 101 GLU HB2 H N N 102 GLU HB3 H N N 103 GLU HG2 H N N 104 GLU HG3 H N N 105 GLU HE2 H N N 106 GLU HXT H N N 107 GLY N N N N 108 GLY CA C N N 109 GLY C C N N 110 GLY O O N N 111 GLY OXT O N N 112 GLY H H N N 113 GLY H2 H N N 114 GLY HA2 H N N 115 GLY HA3 H N N 116 GLY HXT H N N 117 HIS N N N N 118 HIS CA C N S 119 HIS C C N N 120 HIS O O N N 121 HIS CB C N N 122 HIS CG C Y N 123 HIS ND1 N Y N 124 HIS CD2 C Y N 125 HIS CE1 C Y N 126 HIS NE2 N Y N 127 HIS OXT O N N 128 HIS H H N N 129 HIS H2 H N N 130 HIS HA H N N 131 HIS HB2 H N N 132 HIS HB3 H N N 133 HIS HD1 H N N 134 HIS HD2 H N N 135 HIS HE1 H N N 136 HIS HE2 H N N 137 HIS HXT H N N 138 HOH O O N N 139 HOH H1 H N N 140 HOH H2 H N N 141 ILE N N N N 142 ILE CA C N S 143 ILE C C N N 144 ILE O O N N 145 ILE CB C N S 146 ILE CG1 C N N 147 ILE CG2 C N N 148 ILE CD1 C N N 149 ILE OXT O N N 150 ILE H H N N 151 ILE H2 H N N 152 ILE HA H N N 153 ILE HB H N N 154 ILE HG12 H N N 155 ILE HG13 H N N 156 ILE HG21 H N N 157 ILE HG22 H N N 158 ILE HG23 H N N 159 ILE HD11 H N N 160 ILE HD12 H N N 161 ILE HD13 H N N 162 ILE HXT H N N 163 LEU N N N N 164 LEU CA C N S 165 LEU C C N N 166 LEU O O N N 167 LEU CB C N N 168 LEU CG C N N 169 LEU CD1 C N N 170 LEU CD2 C N N 171 LEU OXT O N N 172 LEU H H N N 173 LEU H2 H N N 174 LEU HA H N N 175 LEU HB2 H N N 176 LEU HB3 H N N 177 LEU HG H N N 178 LEU HD11 H N N 179 LEU HD12 H N N 180 LEU HD13 H N N 181 LEU HD21 H N N 182 LEU HD22 H N N 183 LEU HD23 H N N 184 LEU HXT H N N 185 LYS N N N N 186 LYS CA C N S 187 LYS C C N N 188 LYS O O N N 189 LYS CB C N N 190 LYS CG C N N 191 LYS CD C N N 192 LYS CE C N N 193 LYS NZ N N N 194 LYS OXT O N N 195 LYS H H N N 196 LYS H2 H N N 197 LYS HA H N N 198 LYS HB2 H N N 199 LYS HB3 H N N 200 LYS HG2 H N N 201 LYS HG3 H N N 202 LYS HD2 H N N 203 LYS HD3 H N N 204 LYS HE2 H N N 205 LYS HE3 H N N 206 LYS HZ1 H N N 207 LYS HZ2 H N N 208 LYS HZ3 H N N 209 LYS HXT H N N 210 MET N N N N 211 MET CA C N S 212 MET C C N N 213 MET O O N N 214 MET CB C N N 215 MET CG C N N 216 MET SD S N N 217 MET CE C N N 218 MET OXT O N N 219 MET H H N N 220 MET H2 H N N 221 MET HA H N N 222 MET HB2 H N N 223 MET HB3 H N N 224 MET HG2 H N N 225 MET HG3 H N N 226 MET HE1 H N N 227 MET HE2 H N N 228 MET HE3 H N N 229 MET HXT H N N 230 PHE N N N N 231 PHE CA C N S 232 PHE C C N N 233 PHE O O N N 234 PHE CB C N N 235 PHE CG C Y N 236 PHE CD1 C Y N 237 PHE CD2 C Y N 238 PHE CE1 C Y N 239 PHE CE2 C Y N 240 PHE CZ C Y N 241 PHE OXT O N N 242 PHE H H N N 243 PHE H2 H N N 244 PHE HA H N N 245 PHE HB2 H N N 246 PHE HB3 H N N 247 PHE HD1 H N N 248 PHE HD2 H N N 249 PHE HE1 H N N 250 PHE HE2 H N N 251 PHE HZ H N N 252 PHE HXT H N N 253 PRO N N N N 254 PRO CA C N S 255 PRO C C N N 256 PRO O O N N 257 PRO CB C N N 258 PRO CG C N N 259 PRO CD C N N 260 PRO OXT O N N 261 PRO H H N N 262 PRO HA H N N 263 PRO HB2 H N N 264 PRO HB3 H N N 265 PRO HG2 H N N 266 PRO HG3 H N N 267 PRO HD2 H N N 268 PRO HD3 H N N 269 PRO HXT H N N 270 SER N N N N 271 SER CA C N S 272 SER C C N N 273 SER O O N N 274 SER CB C N N 275 SER OG O N N 276 SER OXT O N N 277 SER H H N N 278 SER H2 H N N 279 SER HA H N N 280 SER HB2 H N N 281 SER HB3 H N N 282 SER HG H N N 283 SER HXT H N N 284 THR N N N N 285 THR CA C N S 286 THR C C N N 287 THR O O N N 288 THR CB C N R 289 THR OG1 O N N 290 THR CG2 C N N 291 THR OXT O N N 292 THR H H N N 293 THR H2 H N N 294 THR HA H N N 295 THR HB H N N 296 THR HG1 H N N 297 THR HG21 H N N 298 THR HG22 H N N 299 THR HG23 H N N 300 THR HXT H N N 301 TRP N N N N 302 TRP CA C N S 303 TRP C C N N 304 TRP O O N N 305 TRP CB C N N 306 TRP CG C Y N 307 TRP CD1 C Y N 308 TRP CD2 C Y N 309 TRP NE1 N Y N 310 TRP CE2 C Y N 311 TRP CE3 C Y N 312 TRP CZ2 C Y N 313 TRP CZ3 C Y N 314 TRP CH2 C Y N 315 TRP OXT O N N 316 TRP H H N N 317 TRP H2 H N N 318 TRP HA H N N 319 TRP HB2 H N N 320 TRP HB3 H N N 321 TRP HD1 H N N 322 TRP HE1 H N N 323 TRP HE3 H N N 324 TRP HZ2 H N N 325 TRP HZ3 H N N 326 TRP HH2 H N N 327 TRP HXT H N N 328 TYR N N N N 329 TYR CA C N S 330 TYR C C N N 331 TYR O O N N 332 TYR CB C N N 333 TYR CG C Y N 334 TYR CD1 C Y N 335 TYR CD2 C Y N 336 TYR CE1 C Y N 337 TYR CE2 C Y N 338 TYR CZ C Y N 339 TYR OH O N N 340 TYR OXT O N N 341 TYR H H N N 342 TYR H2 H N N 343 TYR HA H N N 344 TYR HB2 H N N 345 TYR HB3 H N N 346 TYR HD1 H N N 347 TYR HD2 H N N 348 TYR HE1 H N N 349 TYR HE2 H N N 350 TYR HH H N N 351 TYR HXT H N N 352 VAL N N N N 353 VAL CA C N S 354 VAL C C N N 355 VAL O O N N 356 VAL CB C N N 357 VAL CG1 C N N 358 VAL CG2 C N N 359 VAL OXT O N N 360 VAL H H N N 361 VAL H2 H N N 362 VAL HA H N N 363 VAL HB H N N 364 VAL HG11 H N N 365 VAL HG12 H N N 366 VAL HG13 H N N 367 VAL HG21 H N N 368 VAL HG22 H N N 369 VAL HG23 H N N 370 VAL HXT H N N 371 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLU N CA sing N N 83 GLU N H sing N N 84 GLU N H2 sing N N 85 GLU CA C sing N N 86 GLU CA CB sing N N 87 GLU CA HA sing N N 88 GLU C O doub N N 89 GLU C OXT sing N N 90 GLU CB CG sing N N 91 GLU CB HB2 sing N N 92 GLU CB HB3 sing N N 93 GLU CG CD sing N N 94 GLU CG HG2 sing N N 95 GLU CG HG3 sing N N 96 GLU CD OE1 doub N N 97 GLU CD OE2 sing N N 98 GLU OE2 HE2 sing N N 99 GLU OXT HXT sing N N 100 GLY N CA sing N N 101 GLY N H sing N N 102 GLY N H2 sing N N 103 GLY CA C sing N N 104 GLY CA HA2 sing N N 105 GLY CA HA3 sing N N 106 GLY C O doub N N 107 GLY C OXT sing N N 108 GLY OXT HXT sing N N 109 HIS N CA sing N N 110 HIS N H sing N N 111 HIS N H2 sing N N 112 HIS CA C sing N N 113 HIS CA CB sing N N 114 HIS CA HA sing N N 115 HIS C O doub N N 116 HIS C OXT sing N N 117 HIS CB CG sing N N 118 HIS CB HB2 sing N N 119 HIS CB HB3 sing N N 120 HIS CG ND1 sing Y N 121 HIS CG CD2 doub Y N 122 HIS ND1 CE1 doub Y N 123 HIS ND1 HD1 sing N N 124 HIS CD2 NE2 sing Y N 125 HIS CD2 HD2 sing N N 126 HIS CE1 NE2 sing Y N 127 HIS CE1 HE1 sing N N 128 HIS NE2 HE2 sing N N 129 HIS OXT HXT sing N N 130 HOH O H1 sing N N 131 HOH O H2 sing N N 132 ILE N CA sing N N 133 ILE N H sing N N 134 ILE N H2 sing N N 135 ILE CA C sing N N 136 ILE CA CB sing N N 137 ILE CA HA sing N N 138 ILE C O doub N N 139 ILE C OXT sing N N 140 ILE CB CG1 sing N N 141 ILE CB CG2 sing N N 142 ILE CB HB sing N N 143 ILE CG1 CD1 sing N N 144 ILE CG1 HG12 sing N N 145 ILE CG1 HG13 sing N N 146 ILE CG2 HG21 sing N N 147 ILE CG2 HG22 sing N N 148 ILE CG2 HG23 sing N N 149 ILE CD1 HD11 sing N N 150 ILE CD1 HD12 sing N N 151 ILE CD1 HD13 sing N N 152 ILE OXT HXT sing N N 153 LEU N CA sing N N 154 LEU N H sing N N 155 LEU N H2 sing N N 156 LEU CA C sing N N 157 LEU CA CB sing N N 158 LEU CA HA sing N N 159 LEU C O doub N N 160 LEU C OXT sing N N 161 LEU CB CG sing N N 162 LEU CB HB2 sing N N 163 LEU CB HB3 sing N N 164 LEU CG CD1 sing N N 165 LEU CG CD2 sing N N 166 LEU CG HG sing N N 167 LEU CD1 HD11 sing N N 168 LEU CD1 HD12 sing N N 169 LEU CD1 HD13 sing N N 170 LEU CD2 HD21 sing N N 171 LEU CD2 HD22 sing N N 172 LEU CD2 HD23 sing N N 173 LEU OXT HXT sing N N 174 LYS N CA sing N N 175 LYS N H sing N N 176 LYS N H2 sing N N 177 LYS CA C sing N N 178 LYS CA CB sing N N 179 LYS CA HA sing N N 180 LYS C O doub N N 181 LYS C OXT sing N N 182 LYS CB CG sing N N 183 LYS CB HB2 sing N N 184 LYS CB HB3 sing N N 185 LYS CG CD sing N N 186 LYS CG HG2 sing N N 187 LYS CG HG3 sing N N 188 LYS CD CE sing N N 189 LYS CD HD2 sing N N 190 LYS CD HD3 sing N N 191 LYS CE NZ sing N N 192 LYS CE HE2 sing N N 193 LYS CE HE3 sing N N 194 LYS NZ HZ1 sing N N 195 LYS NZ HZ2 sing N N 196 LYS NZ HZ3 sing N N 197 LYS OXT HXT sing N N 198 MET N CA sing N N 199 MET N H sing N N 200 MET N H2 sing N N 201 MET CA C sing N N 202 MET CA CB sing N N 203 MET CA HA sing N N 204 MET C O doub N N 205 MET C OXT sing N N 206 MET CB CG sing N N 207 MET CB HB2 sing N N 208 MET CB HB3 sing N N 209 MET CG SD sing N N 210 MET CG HG2 sing N N 211 MET CG HG3 sing N N 212 MET SD CE sing N N 213 MET CE HE1 sing N N 214 MET CE HE2 sing N N 215 MET CE HE3 sing N N 216 MET OXT HXT sing N N 217 PHE N CA sing N N 218 PHE N H sing N N 219 PHE N H2 sing N N 220 PHE CA C sing N N 221 PHE CA CB sing N N 222 PHE CA HA sing N N 223 PHE C O doub N N 224 PHE C OXT sing N N 225 PHE CB CG sing N N 226 PHE CB HB2 sing N N 227 PHE CB HB3 sing N N 228 PHE CG CD1 doub Y N 229 PHE CG CD2 sing Y N 230 PHE CD1 CE1 sing Y N 231 PHE CD1 HD1 sing N N 232 PHE CD2 CE2 doub Y N 233 PHE CD2 HD2 sing N N 234 PHE CE1 CZ doub Y N 235 PHE CE1 HE1 sing N N 236 PHE CE2 CZ sing Y N 237 PHE CE2 HE2 sing N N 238 PHE CZ HZ sing N N 239 PHE OXT HXT sing N N 240 PRO N CA sing N N 241 PRO N CD sing N N 242 PRO N H sing N N 243 PRO CA C sing N N 244 PRO CA CB sing N N 245 PRO CA HA sing N N 246 PRO C O doub N N 247 PRO C OXT sing N N 248 PRO CB CG sing N N 249 PRO CB HB2 sing N N 250 PRO CB HB3 sing N N 251 PRO CG CD sing N N 252 PRO CG HG2 sing N N 253 PRO CG HG3 sing N N 254 PRO CD HD2 sing N N 255 PRO CD HD3 sing N N 256 PRO OXT HXT sing N N 257 SER N CA sing N N 258 SER N H sing N N 259 SER N H2 sing N N 260 SER CA C sing N N 261 SER CA CB sing N N 262 SER CA HA sing N N 263 SER C O doub N N 264 SER C OXT sing N N 265 SER CB OG sing N N 266 SER CB HB2 sing N N 267 SER CB HB3 sing N N 268 SER OG HG sing N N 269 SER OXT HXT sing N N 270 THR N CA sing N N 271 THR N H sing N N 272 THR N H2 sing N N 273 THR CA C sing N N 274 THR CA CB sing N N 275 THR CA HA sing N N 276 THR C O doub N N 277 THR C OXT sing N N 278 THR CB OG1 sing N N 279 THR CB CG2 sing N N 280 THR CB HB sing N N 281 THR OG1 HG1 sing N N 282 THR CG2 HG21 sing N N 283 THR CG2 HG22 sing N N 284 THR CG2 HG23 sing N N 285 THR OXT HXT sing N N 286 TRP N CA sing N N 287 TRP N H sing N N 288 TRP N H2 sing N N 289 TRP CA C sing N N 290 TRP CA CB sing N N 291 TRP CA HA sing N N 292 TRP C O doub N N 293 TRP C OXT sing N N 294 TRP CB CG sing N N 295 TRP CB HB2 sing N N 296 TRP CB HB3 sing N N 297 TRP CG CD1 doub Y N 298 TRP CG CD2 sing Y N 299 TRP CD1 NE1 sing Y N 300 TRP CD1 HD1 sing N N 301 TRP CD2 CE2 doub Y N 302 TRP CD2 CE3 sing Y N 303 TRP NE1 CE2 sing Y N 304 TRP NE1 HE1 sing N N 305 TRP CE2 CZ2 sing Y N 306 TRP CE3 CZ3 doub Y N 307 TRP CE3 HE3 sing N N 308 TRP CZ2 CH2 doub Y N 309 TRP CZ2 HZ2 sing N N 310 TRP CZ3 CH2 sing Y N 311 TRP CZ3 HZ3 sing N N 312 TRP CH2 HH2 sing N N 313 TRP OXT HXT sing N N 314 TYR N CA sing N N 315 TYR N H sing N N 316 TYR N H2 sing N N 317 TYR CA C sing N N 318 TYR CA CB sing N N 319 TYR CA HA sing N N 320 TYR C O doub N N 321 TYR C OXT sing N N 322 TYR CB CG sing N N 323 TYR CB HB2 sing N N 324 TYR CB HB3 sing N N 325 TYR CG CD1 doub Y N 326 TYR CG CD2 sing Y N 327 TYR CD1 CE1 sing Y N 328 TYR CD1 HD1 sing N N 329 TYR CD2 CE2 doub Y N 330 TYR CD2 HD2 sing N N 331 TYR CE1 CZ doub Y N 332 TYR CE1 HE1 sing N N 333 TYR CE2 CZ sing Y N 334 TYR CE2 HE2 sing N N 335 TYR CZ OH sing N N 336 TYR OH HH sing N N 337 TYR OXT HXT sing N N 338 VAL N CA sing N N 339 VAL N H sing N N 340 VAL N H2 sing N N 341 VAL CA C sing N N 342 VAL CA CB sing N N 343 VAL CA HA sing N N 344 VAL C O doub N N 345 VAL C OXT sing N N 346 VAL CB CG1 sing N N 347 VAL CB CG2 sing N N 348 VAL CB HB sing N N 349 VAL CG1 HG11 sing N N 350 VAL CG1 HG12 sing N N 351 VAL CG1 HG13 sing N N 352 VAL CG2 HG21 sing N N 353 VAL CG2 HG22 sing N N 354 VAL CG2 HG23 sing N N 355 VAL OXT HXT sing N N 356 # _atom_sites.entry_id 1ZD6 _atom_sites.fract_transf_matrix[1][1] 0.023442 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011684 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015751 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_