HEADER HYDROLASE 14-APR-05 1ZDP TITLE CRYSTAL STRUCTURE ANALYSIS OF THERMOLYSIN COMPLEXED WITH THE INHIBITOR TITLE 2 (S)-THIORPHAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 5 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS ENZYME-INHIBITOR COMPLEX; ZINC ENDOPEPTIDASE; GAMMA TURN; KEYWDS 2 THERMOSTABLE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.L.RODERICK,M.C.FOURNIE-ZALUSKI,B.P.ROQUES,B.W.MATTHEWS REVDAT 4 23-AUG-23 1ZDP 1 REMARK SEQADV LINK REVDAT 3 11-OCT-17 1ZDP 1 REMARK REVDAT 2 24-FEB-09 1ZDP 1 VERSN REVDAT 1 26-APR-05 1ZDP 0 JRNL AUTH S.L.RODERICK,M.C.FOURNIE-ZALUSKI,B.P.ROQUES,B.W.MATTHEWS JRNL TITL THIORPHAN AND RETRO-THIORPHAN DISPLAY EQUIVALENT JRNL TITL 2 INTERACTIONS WHEN BOUND TO CRYSTALLINE THERMOLYSIN JRNL REF BIOCHEMISTRY V. 28 1493 1989 JRNL REFN ISSN 0006-2960 JRNL PMID 2719912 JRNL DOI 10.1021/BI00430A011 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.0 REMARK 3 NUMBER OF REFLECTIONS : 25988 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1830 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1830 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 25988 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 14.600 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.020 ; NULL ; 2508 REMARK 3 BOND ANGLES (DEGREES) : 3.530 ; NULL ; 3405 REMARK 3 TORSION ANGLES (DEGREES) : 16.712; NULL ; 1440 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.013 ; NULL ; 67 REMARK 3 GENERAL PLANES (A) : 0.015 ; NULL ; 376 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 4.228 ; NULL ; 2491 REMARK 3 NON-BONDED CONTACTS (A) : 0.062 ; NULL ; 13 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : 0 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT VERSION 1.0 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : ISOTROPIC REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 35 CYCLES OF CONJUGATE GRADIENT REMARK 3 REFINEMENT REMARK 4 REMARK 4 1ZDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032602. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 1987 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 7.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-21 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : GRAPHITE MONOCHROMATOR, REMARK 200 COLLIMATING SLITS REMARK 200 REMARK 200 DETECTOR TYPE : FILM REMARK 200 DETECTOR MANUFACTURER : KODAK REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ROTAVATA, OSCTST REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26142 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 68.0 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : 0.03800 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: PDB ENTRY 3TLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS ACETATE, CALCIUM ACETATE, DMSO, REMARK 280 PH 7.20, DILUTION WITH H2O, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.03333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.06667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.05000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 110.08333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.01667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.03333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.06667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 110.08333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 66.05000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 22.01667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ENZYME ACTS AS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG E 269 OD2 ASP E 294 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER E 53 CB SER E 53 OG -0.086 REMARK 500 GLU E 160 CD GLU E 160 OE2 0.075 REMARK 500 GLU E 187 CD GLU E 187 OE2 0.103 REMARK 500 GLU E 190 CD GLU E 190 OE2 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR E 4 OG1 - CB - CG2 ANGL. DEV. = -16.6 DEGREES REMARK 500 THR E 6 OG1 - CB - CG2 ANGL. DEV. = -15.2 DEGREES REMARK 500 ASP E 16 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ASP E 16 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 TYR E 24 CG - CD1 - CE1 ANGL. DEV. = 6.7 DEGREES REMARK 500 THR E 26 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 TYR E 42 CZ - CE2 - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 SER E 53 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 ASP E 57 CB - CG - OD1 ANGL. DEV. = 14.8 DEGREES REMARK 500 ASP E 57 CB - CG - OD2 ANGL. DEV. = -10.3 DEGREES REMARK 500 GLN E 61 CA - CB - CG ANGL. DEV. = -15.0 DEGREES REMARK 500 TYR E 66 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 TYR E 75 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 TYR E 75 CG - CD1 - CE1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP E 82 CB - CG - OD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP E 82 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 TYR E 93 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG E 101 CG - CD - NE ANGL. DEV. = -15.2 DEGREES REMARK 500 SER E 103 N - CA - CB ANGL. DEV. = 9.8 DEGREES REMARK 500 ALA E 113 N - CA - CB ANGL. DEV. = 9.6 DEGREES REMARK 500 TYR E 122 CG - CD1 - CE1 ANGL. DEV. = -7.1 DEGREES REMARK 500 TYR E 122 CG - CD2 - CE2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TYR E 122 CD1 - CE1 - CZ ANGL. DEV. = 7.2 DEGREES REMARK 500 TYR E 122 CZ - CE2 - CD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP E 124 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 GLN E 128 N - CA - CB ANGL. DEV. = -11.1 DEGREES REMARK 500 ILE E 156 CA - CB - CG2 ANGL. DEV. = 12.7 DEGREES REMARK 500 ASP E 185 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP E 185 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 GLY E 196 C - N - CA ANGL. DEV. = -14.1 DEGREES REMARK 500 ASP E 200 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP E 200 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG E 203 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP E 207 CB - CG - OD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP E 207 CB - CG - OD2 ANGL. DEV. = -9.8 DEGREES REMARK 500 TYR E 211 CB - CG - CD2 ANGL. DEV. = -9.9 DEGREES REMARK 500 TYR E 211 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 PRO E 214 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG E 220 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG E 220 CD - NE - CZ ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG E 220 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG E 220 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 TYR E 221 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP E 226 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP E 226 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 TYR E 242 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 THR E 249 CA - CB - CG2 ANGL. DEV. = -8.9 DEGREES REMARK 500 TYR E 251 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG E 260 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG E 260 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 65 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER E 25 84.18 -160.48 REMARK 500 THR E 26 -58.18 78.05 REMARK 500 PHE E 62 64.86 -117.27 REMARK 500 SER E 92 -171.11 57.61 REMARK 500 SER E 107 -159.97 56.85 REMARK 500 ASN E 111 46.47 -93.95 REMARK 500 SER E 118 -19.36 -140.30 REMARK 500 THR E 152 -101.20 -110.85 REMARK 500 ASN E 159 -143.34 56.66 REMARK 500 THR E 194 71.71 35.23 REMARK 500 ASP E 207 85.30 -152.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD1 REMARK 620 2 ASP E 57 OD2 49.9 REMARK 620 3 ASP E 59 OD1 118.5 68.9 REMARK 620 4 GLN E 61 O 95.3 90.3 90.8 REMARK 620 5 HOH E 419 O 84.4 133.1 156.9 83.2 REMARK 620 6 HOH E 482 O 164.7 145.1 76.2 88.7 81.4 REMARK 620 7 HOH E 503 O 86.9 88.8 85.5 176.3 100.0 89.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD1 REMARK 620 2 GLU E 177 OE1 76.8 REMARK 620 3 GLU E 177 OE2 121.7 46.3 REMARK 620 4 ASP E 185 OD2 162.0 120.8 76.4 REMARK 620 5 GLU E 187 O 86.6 141.4 144.3 76.8 REMARK 620 6 GLU E 190 OE1 85.0 132.5 121.2 84.9 79.1 REMARK 620 7 GLU E 190 OE2 99.0 87.2 70.8 86.6 130.2 52.6 REMARK 620 8 HOH E 346 O 96.9 74.8 81.8 85.2 72.9 151.7 152.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E1005 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 100.8 REMARK 620 3 GLU E 166 OE1 126.4 97.2 REMARK 620 4 TIO E1006 SG1 116.3 112.8 101.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 177 OE2 REMARK 620 2 ASN E 183 O 92.8 REMARK 620 3 ASP E 185 OD1 94.6 93.0 REMARK 620 4 GLU E 190 OE2 84.0 174.9 83.3 REMARK 620 5 HOH E 353 O 90.9 91.3 172.8 92.7 REMARK 620 6 HOH E 475 O 164.1 91.2 100.6 92.9 73.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 O REMARK 620 2 THR E 194 OG1 75.3 REMARK 620 3 THR E 194 O 77.5 65.5 REMARK 620 4 ILE E 197 O 148.2 107.4 75.4 REMARK 620 5 ASP E 200 OD1 125.2 77.3 129.6 85.4 REMARK 620 6 HOH E 354 O 81.5 125.1 152.8 117.7 77.0 REMARK 620 7 HOH E 480 O 87.6 147.1 83.6 73.2 134.5 78.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TIO E 1006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z9G RELATED DB: PDB DBREF 1ZDP E 1 316 UNP P00800 THER_BACTH 233 548 SEQADV 1ZDP ASP E 37 UNP P00800 ASN 269 CONFLICT SEQADV 1ZDP GLU E 119 UNP P00800 GLN 351 CONFLICT SEQADV 1ZDP GLU E 177 UNP P00800 LYS 409 SEE REMARK 999 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASP GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLU MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET CA E1001 1 HET CA E1002 1 HET CA E1003 1 HET CA E1004 1 HET ZN E1005 1 HET TIO E1006 17 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM TIO (2-MERCAPTOMETHYL-3-PHENYL-PROPIONYL)-GLYCINE HETSYN TIO THIORPHAN FORMUL 2 CA 4(CA 2+) FORMUL 6 ZN ZN 2+ FORMUL 7 TIO C12 H15 N O3 S FORMUL 8 HOH *161(H2 O) HELIX 1 1 ASP E 67 ASN E 89 1 23 HELIX 2 2 PRO E 132 GLY E 135 5 4 HELIX 3 3 GLY E 136 THR E 152 1 17 HELIX 4 4 GLN E 158 ASN E 181 1 24 HELIX 5 5 ASP E 207 GLY E 212 5 6 HELIX 6 6 HIS E 216 ARG E 220 5 5 HELIX 7 7 GLN E 225 VAL E 230 1 6 HELIX 8 8 ASN E 233 GLY E 247 1 15 HELIX 9 9 GLY E 259 TYR E 274 1 16 HELIX 10 10 ASN E 280 GLY E 297 1 18 HELIX 11 11 SER E 300 VAL E 313 1 14 SHEET 1 A 5 ALA E 56 ASP E 57 0 SHEET 2 A 5 TYR E 28 TYR E 29 -1 N TYR E 28 O ASP E 57 SHEET 3 A 5 GLN E 17 TYR E 24 -1 N THR E 23 O TYR E 29 SHEET 4 A 5 THR E 4 ARG E 11 -1 N THR E 4 O TYR E 24 SHEET 5 A 5 GLN E 61 PHE E 62 1 O PHE E 62 N VAL E 9 SHEET 1 B 3 GLN E 31 ASP E 32 0 SHEET 2 B 3 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 B 3 SER E 53 LEU E 54 -1 O SER E 53 N ASP E 43 SHEET 1 C 5 GLN E 31 ASP E 32 0 SHEET 2 C 5 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 C 5 ILE E 100 VAL E 104 1 O SER E 102 N TYR E 42 SHEET 4 C 5 MET E 120 TYR E 122 1 O TYR E 122 N SER E 103 SHEET 5 C 5 ALA E 113 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 D 2 GLU E 187 ILE E 188 0 SHEET 2 D 2 ARG E 203 SER E 204 -1 O ARG E 203 N ILE E 188 SHEET 1 E 2 GLY E 248 HIS E 250 0 SHEET 2 E 2 VAL E 253 VAL E 255 -1 O VAL E 255 N GLY E 248 LINK OD1 ASP E 57 CA CA E1003 1555 1555 2.14 LINK OD2 ASP E 57 CA CA E1003 1555 1555 2.68 LINK OD1 ASP E 59 CA CA E1003 1555 1555 2.42 LINK O GLN E 61 CA CA E1003 1555 1555 2.19 LINK OD1 ASP E 138 CA CA E1001 1555 1555 2.41 LINK NE2 HIS E 142 ZN ZN E1005 1555 1555 2.14 LINK NE2 HIS E 146 ZN ZN E1005 1555 1555 2.10 LINK OE1 GLU E 166 ZN ZN E1005 1555 1555 2.00 LINK OE1 GLU E 177 CA CA E1001 1555 1555 2.55 LINK OE2 GLU E 177 CA CA E1001 1555 1555 2.87 LINK OE2 GLU E 177 CA CA E1002 1555 1555 2.29 LINK O ASN E 183 CA CA E1002 1555 1555 2.61 LINK OD2 ASP E 185 CA CA E1001 1555 1555 2.52 LINK OD1 ASP E 185 CA CA E1002 1555 1555 2.39 LINK O GLU E 187 CA CA E1001 1555 1555 2.29 LINK OE1 GLU E 190 CA CA E1001 1555 1555 2.58 LINK OE2 GLU E 190 CA CA E1001 1555 1555 2.48 LINK OE2 GLU E 190 CA CA E1002 1555 1555 2.36 LINK O TYR E 193 CA CA E1004 1555 1555 2.59 LINK OG1 THR E 194 CA CA E1004 1555 1555 2.50 LINK O THR E 194 CA CA E1004 1555 1555 2.60 LINK O ILE E 197 CA CA E1004 1555 1555 2.27 LINK OD1 ASP E 200 CA CA E1004 1555 1555 2.28 LINK O HOH E 346 CA CA E1001 1555 1555 2.69 LINK O HOH E 353 CA CA E1002 1555 1555 2.44 LINK O HOH E 354 CA CA E1004 1555 1555 2.56 LINK O HOH E 419 CA CA E1003 1555 1555 2.43 LINK O HOH E 475 CA CA E1002 1555 1555 1.89 LINK O HOH E 480 CA CA E1004 1555 1555 2.29 LINK O HOH E 482 CA CA E1003 1555 1555 2.21 LINK O HOH E 503 CA CA E1003 1555 1555 2.38 LINK ZN ZN E1005 SG1 TIO E1006 1555 1555 2.41 CISPEP 1 LEU E 50 PRO E 51 0 0.35 SITE 1 AC1 6 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC1 6 GLU E 190 HOH E 346 SITE 1 AC2 6 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC2 6 HOH E 353 HOH E 475 SITE 1 AC3 6 ASP E 57 ASP E 59 GLN E 61 HOH E 419 SITE 2 AC3 6 HOH E 482 HOH E 503 SITE 1 AC4 6 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC4 6 HOH E 354 HOH E 480 SITE 1 AC5 5 HIS E 142 HIS E 146 TYR E 157 GLU E 166 SITE 2 AC5 5 TIO E1006 SITE 1 AC6 11 ASN E 112 ALA E 113 VAL E 139 GLU E 143 SITE 2 AC6 11 TYR E 157 GLU E 166 ILE E 188 LEU E 202 SITE 3 AC6 11 ARG E 203 HIS E 231 ZN E1005 CRYST1 94.000 94.000 132.100 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010638 0.006142 0.000000 0.00000 SCALE2 0.000000 0.012284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007570 0.00000