data_1ZF0 # _entry.id 1ZF0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZF0 pdb_00001zf0 10.2210/pdb1zf0/pdb NDB BD0077 ? ? RCSB RCSB032643 ? ? WWPDB D_1000032643 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-10 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2024-02-14 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site 8 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 21 5 'Structure model' '_pdbx_struct_conn_angle.value' 22 5 'Structure model' '_struct_conn.pdbx_dist_value' 23 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 5 'Structure model' '_struct_conn.ptnr1_symmetry' 31 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 5 'Structure model' '_struct_conn.ptnr2_symmetry' 39 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 1ZF0 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-04-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1P4Y . unspecified PDB 1P4Z . unspecified PDB 1DCW . unspecified PDB 1DCV . unspecified PDB 1ZEW . unspecified PDB 1ZEX . unspecified PDB 1ZEY . unspecified PDB 1ZEZ . unspecified PDB 1ZF1 . unspecified PDB 1ZF2 . unspecified PDB 1ZF3 . unspecified PDB 1ZF4 . unspecified PDB 1ZF5 . unspecified PDB 1ZF6 . unspecified PDB 1ZF7 . unspecified PDB 1ZF8 . unspecified PDB 1ZF9 . unspecified PDB 1ZFA . unspecified PDB 1ZFB . unspecified PDB 1ZFC . unspecified PDB 1ZFE . unspecified PDB 1ZFF . unspecified PDB 1ZFG . unspecified PDB 1ZFH . unspecified PDB 1ZFM . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hays, F.A.' 1 'Teegarden, A.T.' 2 'Jones, Z.J.R.' 3 'Harms, M.' 4 'Raup, D.' 5 'Watson, J.' 6 'Cavaliere, E.' 7 'Ho, P.S.' 8 # _citation.id primary _citation.title 'How sequence defines structure: a crystallographic map of DNA structure and conformation.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 102 _citation.page_first 7157 _citation.page_last 7162 _citation.year 2005 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15870206 _citation.pdbx_database_id_DOI 10.1073/pnas.0409455102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hays, F.A.' 1 ? primary 'Teegarden, A.' 2 ? primary 'Jones, Z.J.' 3 ? primary 'Harms, M.' 4 ? primary 'Raup, D.' 5 ? primary 'Watson, J.' 6 ? primary 'Cavaliere, E.' 7 ? primary 'Ho, P.S.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*GP*TP*TP*AP*AP*CP*GP*G)-3'" 3045.005 2 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 3 water nat water 18.015 162 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DT)(DT)(DA)(DA)(DC)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGTTAACGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DT n 1 6 DA n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;DNA WAS SYNTHESIZED ON AN APPLIED BIOSYSTEMS DNA SYNTHESIZER USING PHOSPHORAMIDITE CHEMISTRY, WITH THE TRITYL-PROTECTING GROUP LEFT INTACT AT THE 5'-TERMINAL NUCLEOTIDE THEN DEPROTECTED BY TREATMENT WITH 3% ACETIC ACID FOR FIFTEEN MINUTES, NEUTRALIZED WITH AMMONIUM HYDROXIDE, AND DESALTED ON A SIGMA G-25 SEPHADEX COLUMN. ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DT 4 14 14 DT T B . n B 1 5 DT 5 15 15 DT T B . n B 1 6 DA 6 16 16 DA A B . n B 1 7 DA 7 17 17 DA A B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA 1 21 21 CA CA A . D 2 CA 1 30 30 CA CA A . E 2 CA 1 25 25 CA CA B . F 2 CA 1 49 49 CA CA B . G 3 HOH 1 22 22 HOH HOH A . G 3 HOH 2 23 23 HOH HOH A . G 3 HOH 3 27 27 HOH HOH A . G 3 HOH 4 28 28 HOH HOH A . G 3 HOH 5 29 29 HOH HOH A . G 3 HOH 6 31 31 HOH HOH A . G 3 HOH 7 32 32 HOH HOH A . G 3 HOH 8 38 38 HOH HOH A . G 3 HOH 9 42 42 HOH HOH A . G 3 HOH 10 45 45 HOH HOH A . G 3 HOH 11 47 47 HOH HOH A . G 3 HOH 12 51 51 HOH HOH A . G 3 HOH 13 54 54 HOH HOH A . G 3 HOH 14 55 55 HOH HOH A . G 3 HOH 15 56 56 HOH HOH A . G 3 HOH 16 63 63 HOH HOH A . G 3 HOH 17 64 64 HOH HOH A . G 3 HOH 18 65 65 HOH HOH A . G 3 HOH 19 67 67 HOH HOH A . G 3 HOH 20 70 70 HOH HOH A . G 3 HOH 21 73 73 HOH HOH A . G 3 HOH 22 74 74 HOH HOH A . G 3 HOH 23 75 75 HOH HOH A . G 3 HOH 24 77 77 HOH HOH A . G 3 HOH 25 79 79 HOH HOH A . G 3 HOH 26 84 84 HOH HOH A . G 3 HOH 27 85 85 HOH HOH A . G 3 HOH 28 86 86 HOH HOH A . G 3 HOH 29 87 87 HOH HOH A . G 3 HOH 30 88 88 HOH HOH A . G 3 HOH 31 89 89 HOH HOH A . G 3 HOH 32 91 91 HOH HOH A . G 3 HOH 33 95 95 HOH HOH A . G 3 HOH 34 99 99 HOH HOH A . G 3 HOH 35 100 100 HOH HOH A . G 3 HOH 36 104 104 HOH HOH A . G 3 HOH 37 106 106 HOH HOH A . G 3 HOH 38 109 109 HOH HOH A . G 3 HOH 39 110 110 HOH HOH A . G 3 HOH 40 112 112 HOH HOH A . G 3 HOH 41 113 113 HOH HOH A . G 3 HOH 42 115 115 HOH HOH A . G 3 HOH 43 116 116 HOH HOH A . G 3 HOH 44 117 117 HOH HOH A . G 3 HOH 45 119 119 HOH HOH A . G 3 HOH 46 120 120 HOH HOH A . G 3 HOH 47 122 122 HOH HOH A . G 3 HOH 48 124 124 HOH HOH A . G 3 HOH 49 126 126 HOH HOH A . G 3 HOH 50 129 129 HOH HOH A . G 3 HOH 51 131 131 HOH HOH A . G 3 HOH 52 132 132 HOH HOH A . G 3 HOH 53 137 137 HOH HOH A . G 3 HOH 54 139 139 HOH HOH A . G 3 HOH 55 146 146 HOH HOH A . G 3 HOH 56 149 149 HOH HOH A . G 3 HOH 57 150 150 HOH HOH A . G 3 HOH 58 153 153 HOH HOH A . G 3 HOH 59 154 154 HOH HOH A . G 3 HOH 60 157 157 HOH HOH A . G 3 HOH 61 158 158 HOH HOH A . G 3 HOH 62 159 159 HOH HOH A . G 3 HOH 63 160 160 HOH HOH A . G 3 HOH 64 170 170 HOH HOH A . G 3 HOH 65 171 171 HOH HOH A . G 3 HOH 66 174 174 HOH HOH A . G 3 HOH 67 175 175 HOH HOH A . G 3 HOH 68 176 176 HOH HOH A . G 3 HOH 69 177 177 HOH HOH A . G 3 HOH 70 179 179 HOH HOH A . G 3 HOH 71 180 180 HOH HOH A . G 3 HOH 72 183 183 HOH HOH A . G 3 HOH 73 184 184 HOH HOH A . H 3 HOH 1 24 24 HOH HOH B . H 3 HOH 2 26 26 HOH HOH B . H 3 HOH 3 33 33 HOH HOH B . H 3 HOH 4 34 34 HOH HOH B . H 3 HOH 5 35 35 HOH HOH B . H 3 HOH 6 36 36 HOH HOH B . H 3 HOH 7 37 37 HOH HOH B . H 3 HOH 8 39 39 HOH HOH B . H 3 HOH 9 40 40 HOH HOH B . H 3 HOH 10 41 41 HOH HOH B . H 3 HOH 11 43 43 HOH HOH B . H 3 HOH 12 44 44 HOH HOH B . H 3 HOH 13 46 46 HOH HOH B . H 3 HOH 14 48 48 HOH HOH B . H 3 HOH 15 50 50 HOH HOH B . H 3 HOH 16 52 52 HOH HOH B . H 3 HOH 17 53 53 HOH HOH B . H 3 HOH 18 57 57 HOH HOH B . H 3 HOH 19 58 58 HOH HOH B . H 3 HOH 20 59 59 HOH HOH B . H 3 HOH 21 60 60 HOH HOH B . H 3 HOH 22 61 61 HOH HOH B . H 3 HOH 23 62 62 HOH HOH B . H 3 HOH 24 66 66 HOH HOH B . H 3 HOH 25 68 68 HOH HOH B . H 3 HOH 26 69 69 HOH HOH B . H 3 HOH 27 71 71 HOH HOH B . H 3 HOH 28 72 72 HOH HOH B . H 3 HOH 29 76 76 HOH HOH B . H 3 HOH 30 78 78 HOH HOH B . H 3 HOH 31 80 80 HOH HOH B . H 3 HOH 32 81 81 HOH HOH B . H 3 HOH 33 82 82 HOH HOH B . H 3 HOH 34 83 83 HOH HOH B . H 3 HOH 35 90 90 HOH HOH B . H 3 HOH 36 92 92 HOH HOH B . H 3 HOH 37 93 93 HOH HOH B . H 3 HOH 38 94 94 HOH HOH B . H 3 HOH 39 96 96 HOH HOH B . H 3 HOH 40 97 97 HOH HOH B . H 3 HOH 41 98 98 HOH HOH B . H 3 HOH 42 101 101 HOH HOH B . H 3 HOH 43 102 102 HOH HOH B . H 3 HOH 44 103 103 HOH HOH B . H 3 HOH 45 105 105 HOH HOH B . H 3 HOH 46 107 107 HOH HOH B . H 3 HOH 47 108 108 HOH HOH B . H 3 HOH 48 111 111 HOH HOH B . H 3 HOH 49 114 114 HOH HOH B . H 3 HOH 50 118 118 HOH HOH B . H 3 HOH 51 121 121 HOH HOH B . H 3 HOH 52 123 123 HOH HOH B . H 3 HOH 53 125 125 HOH HOH B . H 3 HOH 54 127 127 HOH HOH B . H 3 HOH 55 128 128 HOH HOH B . H 3 HOH 56 130 130 HOH HOH B . H 3 HOH 57 133 133 HOH HOH B . H 3 HOH 58 134 134 HOH HOH B . H 3 HOH 59 135 135 HOH HOH B . H 3 HOH 60 136 136 HOH HOH B . H 3 HOH 61 138 138 HOH HOH B . H 3 HOH 62 140 140 HOH HOH B . H 3 HOH 63 141 141 HOH HOH B . H 3 HOH 64 142 142 HOH HOH B . H 3 HOH 65 143 143 HOH HOH B . H 3 HOH 66 144 144 HOH HOH B . H 3 HOH 67 145 145 HOH HOH B . H 3 HOH 68 147 147 HOH HOH B . H 3 HOH 69 148 148 HOH HOH B . H 3 HOH 70 151 151 HOH HOH B . H 3 HOH 71 152 152 HOH HOH B . H 3 HOH 72 155 155 HOH HOH B . H 3 HOH 73 156 156 HOH HOH B . H 3 HOH 74 161 161 HOH HOH B . H 3 HOH 75 162 162 HOH HOH B . H 3 HOH 76 163 163 HOH HOH B . H 3 HOH 77 164 164 HOH HOH B . H 3 HOH 78 165 165 HOH HOH B . H 3 HOH 79 166 166 HOH HOH B . H 3 HOH 80 167 167 HOH HOH B . H 3 HOH 81 168 168 HOH HOH B . H 3 HOH 82 169 169 HOH HOH B . H 3 HOH 83 172 172 HOH HOH B . H 3 HOH 84 173 173 HOH HOH B . H 3 HOH 85 178 178 HOH HOH B . H 3 HOH 86 181 181 HOH HOH B . H 3 HOH 87 182 182 HOH HOH B . H 3 HOH 88 185 185 HOH HOH B . H 3 HOH 89 186 186 HOH HOH B . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 CNS 1.1 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 EPMR . ? ? ? ? phasing ? ? ? 4 # _cell.entry_id 1ZF0 _cell.length_a 33.290 _cell.length_b 33.290 _cell.length_c 93.620 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZF0 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1ZF0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_percent_sol 49.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'Na Cacodylate, CaCl2, Spermine, MPD in resevoir, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 7.00' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Na Cacodylate' ? ? ? 1 2 1 CaCl2 ? ? ? 1 3 1 Spermine ? ? ? 1 4 1 MPD ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'Na Cacodylate' ? ? ? 1 7 2 CaCl2 ? ? ? 1 8 2 MPD ? ? ? 1 9 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 103.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2003-02-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.542 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.542 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1ZF0 _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 27.600 _reflns.d_resolution_high 1.500 _reflns.number_obs 7561 _reflns.number_all ? _reflns.percent_possible_obs 67.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.079 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 4.5 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 43.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.129 _reflns_shell.meanI_over_sigI_obs 3.630 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ZF0 _refine.ls_number_reflns_obs 7541 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 54214.48 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.17 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 73.8 _refine.ls_R_factor_obs 0.253 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.253 _refine.ls_R_factor_R_free 0.258 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.7 _refine.ls_number_reflns_R_free 806 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 3.62 _refine.aniso_B[1][1] 0.14400 _refine.aniso_B[2][2] 0.14400 _refine.aniso_B[3][3] -0.28800 _refine.aniso_B[1][2] -0.93100 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol 65.24 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'STRUCTURE IS NOT FULLY REFINED TO ITS LOWEST R VALUES. PLEASE REFER TO THE CITED ARTICLE ABOVE FOR MORE INFORMATION.' _refine.pdbx_starting_model 'NDB ENTRY BDJ055' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1ZF0 _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.10 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.25 _refine_analyze.Luzzati_sigma_a_free 0.17 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 162 _refine_hist.number_atoms_total 570 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 18.17 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.0 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 16.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.33 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.329 ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.291 0.000 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.59 _refine_ls_shell.number_reflns_R_work 740 _refine_ls_shell.R_factor_R_work 0.255 _refine_ls_shell.percent_reflns_obs 49.4 _refine_ls_shell.R_factor_R_free 0.345 _refine_ls_shell.R_factor_R_free_error 0.037 _refine_ls_shell.percent_reflns_R_free 10.3 _refine_ls_shell.number_reflns_R_free 85 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:DNA-RNA_REP.PARAM CNS_TOPPAR:DNA-RNA.TOP 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:WATER_REP.PARAM CNS_TOPPAR:DNA-RNA.LINK 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:ION.PARAM CNS_TOPPAR:WATER.TOP 'X-RAY DIFFRACTION' 4 ? CNS_TOPPAR:ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1ZF0 _struct.title B-DNA _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Crystallographic Screen, DNA Structure, Holliday Junction, Molecular Structure, DNA' _struct_keywords.entry_id 1ZF0 _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1ZF0 _struct_ref.pdbx_db_accession 1ZF0 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZF0 A 1 ? 10 ? 1ZF0 1 ? 10 ? 1 10 2 1 1ZF0 B 1 ? 10 ? 1ZF0 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 8 OP2 ? ? ? 1_555 D CA . CA ? ? A DC 8 A CA 30 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc2 metalc ? ? A DC 8 OP2 ? ? ? 5_675 D CA . CA ? ? A DC 8 A CA 30 1_555 ? ? ? ? ? ? ? 2.233 ? ? metalc3 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 21 A HOH 27 1_555 ? ? ? ? ? ? ? 2.280 ? ? metalc4 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 21 A HOH 112 1_555 ? ? ? ? ? ? ? 2.548 ? ? metalc5 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 21 B HOH 33 1_555 ? ? ? ? ? ? ? 2.329 ? ? metalc6 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 21 B HOH 34 1_555 ? ? ? ? ? ? ? 2.390 ? ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 21 B HOH 48 1_555 ? ? ? ? ? ? ? 2.423 ? ? metalc8 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 21 B HOH 76 1_555 ? ? ? ? ? ? ? 2.731 ? ? metalc9 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 21 B HOH 93 5_665 ? ? ? ? ? ? ? 2.526 ? ? metalc10 metalc ? ? G HOH . O ? ? ? 1_555 F CA . CA ? ? A HOH 28 B CA 49 1_555 ? ? ? ? ? ? ? 2.453 ? ? metalc11 metalc ? ? G HOH . O ? ? ? 1_555 F CA . CA ? ? A HOH 29 B CA 49 1_555 ? ? ? ? ? ? ? 2.418 ? ? metalc12 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 30 A HOH 65 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc13 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 30 A HOH 65 5_675 ? ? ? ? ? ? ? 2.333 ? ? metalc14 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 30 A HOH 109 1_555 ? ? ? ? ? ? ? 2.716 ? ? metalc15 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 30 A HOH 109 5_675 ? ? ? ? ? ? ? 2.716 ? ? metalc16 metalc ? ? G HOH . O ? ? ? 1_555 F CA . CA ? ? A HOH 75 B CA 49 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc17 metalc ? ? G HOH . O ? ? ? 1_555 F CA . CA ? ? A HOH 86 B CA 49 1_555 ? ? ? ? ? ? ? 2.466 ? ? metalc18 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 25 B HOH 44 1_555 ? ? ? ? ? ? ? 2.586 ? ? metalc19 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 25 B HOH 50 1_555 ? ? ? ? ? ? ? 2.411 ? ? metalc20 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 25 B HOH 108 1_555 ? ? ? ? ? ? ? 2.247 ? ? metalc21 metalc ? ? H HOH . O ? ? ? 1_555 F CA . CA ? ? B HOH 46 B CA 49 1_555 ? ? ? ? ? ? ? 2.636 ? ? metalc22 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 49 B HOH 60 1_555 ? ? ? ? ? ? ? 2.315 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A DC 8 ? A DC 8 ? 1_555 CA ? D CA . ? A CA 30 ? 1_555 OP2 ? A DC 8 ? A DC 8 ? 5_675 177.7 ? 2 OP2 ? A DC 8 ? A DC 8 ? 1_555 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 65 ? 1_555 94.5 ? 3 OP2 ? A DC 8 ? A DC 8 ? 5_675 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 65 ? 1_555 87.5 ? 4 OP2 ? A DC 8 ? A DC 8 ? 1_555 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 65 ? 5_675 87.6 ? 5 OP2 ? A DC 8 ? A DC 8 ? 5_675 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 65 ? 5_675 93.6 ? 6 O ? G HOH . ? A HOH 65 ? 1_555 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 65 ? 5_675 83.3 ? 7 OP2 ? A DC 8 ? A DC 8 ? 1_555 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 109 ? 1_555 89.2 ? 8 OP2 ? A DC 8 ? A DC 8 ? 5_675 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 109 ? 1_555 88.6 ? 9 O ? G HOH . ? A HOH 65 ? 1_555 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 109 ? 1_555 138.8 ? 10 O ? G HOH . ? A HOH 65 ? 5_675 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 109 ? 1_555 137.9 ? 11 OP2 ? A DC 8 ? A DC 8 ? 1_555 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 109 ? 5_675 89.0 ? 12 OP2 ? A DC 8 ? A DC 8 ? 5_675 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 109 ? 5_675 88.8 ? 13 O ? G HOH . ? A HOH 65 ? 1_555 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 109 ? 5_675 138.7 ? 14 O ? G HOH . ? A HOH 65 ? 5_675 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 109 ? 5_675 138.0 ? 15 O ? G HOH . ? A HOH 109 ? 1_555 CA ? D CA . ? A CA 30 ? 1_555 O ? G HOH . ? A HOH 109 ? 5_675 0.2 ? 16 O ? G HOH . ? A HOH 27 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? G HOH . ? A HOH 112 ? 1_555 78.9 ? 17 O ? G HOH . ? A HOH 27 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 33 ? 1_555 84.9 ? 18 O ? G HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 33 ? 1_555 156.8 ? 19 O ? G HOH . ? A HOH 27 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 34 ? 1_555 87.7 ? 20 O ? G HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 34 ? 1_555 126.7 ? 21 O ? H HOH . ? B HOH 33 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 34 ? 1_555 68.4 ? 22 O ? G HOH . ? A HOH 27 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 48 ? 1_555 87.8 ? 23 O ? G HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 48 ? 1_555 90.2 ? 24 O ? H HOH . ? B HOH 33 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 48 ? 1_555 72.6 ? 25 O ? H HOH . ? B HOH 34 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 48 ? 1_555 141.0 ? 26 O ? G HOH . ? A HOH 27 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 76 ? 1_555 116.1 ? 27 O ? G HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 76 ? 1_555 77.5 ? 28 O ? H HOH . ? B HOH 33 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 76 ? 1_555 124.9 ? 29 O ? H HOH . ? B HOH 34 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 76 ? 1_555 62.8 ? 30 O ? H HOH . ? B HOH 48 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 76 ? 1_555 149.7 ? 31 O ? G HOH . ? A HOH 27 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 93 ? 5_665 167.8 ? 32 O ? G HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 93 ? 5_665 113.0 ? 33 O ? H HOH . ? B HOH 33 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 93 ? 5_665 84.3 ? 34 O ? H HOH . ? B HOH 34 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 93 ? 5_665 83.3 ? 35 O ? H HOH . ? B HOH 48 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 93 ? 5_665 94.1 ? 36 O ? H HOH . ? B HOH 76 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? H HOH . ? B HOH 93 ? 5_665 66.6 ? 37 O ? G HOH . ? A HOH 28 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? G HOH . ? A HOH 29 ? 1_555 82.3 ? 38 O ? G HOH . ? A HOH 28 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? G HOH . ? A HOH 75 ? 1_555 87.0 ? 39 O ? G HOH . ? A HOH 29 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? G HOH . ? A HOH 75 ? 1_555 158.0 ? 40 O ? G HOH . ? A HOH 28 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? G HOH . ? A HOH 86 ? 1_555 82.5 ? 41 O ? G HOH . ? A HOH 29 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? G HOH . ? A HOH 86 ? 1_555 128.0 ? 42 O ? G HOH . ? A HOH 75 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? G HOH . ? A HOH 86 ? 1_555 68.9 ? 43 O ? G HOH . ? A HOH 28 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? H HOH . ? B HOH 46 ? 1_555 90.9 ? 44 O ? G HOH . ? A HOH 29 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? H HOH . ? B HOH 46 ? 1_555 71.3 ? 45 O ? G HOH . ? A HOH 75 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? H HOH . ? B HOH 46 ? 1_555 89.9 ? 46 O ? G HOH . ? A HOH 86 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? H HOH . ? B HOH 46 ? 1_555 157.9 ? 47 O ? G HOH . ? A HOH 28 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? H HOH . ? B HOH 60 ? 1_555 177.6 ? 48 O ? G HOH . ? A HOH 29 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? H HOH . ? B HOH 60 ? 1_555 99.6 ? 49 O ? G HOH . ? A HOH 75 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? H HOH . ? B HOH 60 ? 1_555 91.7 ? 50 O ? G HOH . ? A HOH 86 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? H HOH . ? B HOH 60 ? 1_555 95.1 ? 51 O ? H HOH . ? B HOH 46 ? 1_555 CA ? F CA . ? B CA 49 ? 1_555 O ? H HOH . ? B HOH 60 ? 1_555 91.2 ? 52 O ? H HOH . ? B HOH 44 ? 1_555 CA ? E CA . ? B CA 25 ? 1_555 O ? H HOH . ? B HOH 50 ? 1_555 71.6 ? 53 O ? H HOH . ? B HOH 44 ? 1_555 CA ? E CA . ? B CA 25 ? 1_555 O ? H HOH . ? B HOH 108 ? 1_555 112.1 ? 54 O ? H HOH . ? B HOH 50 ? 1_555 CA ? E CA . ? B CA 25 ? 1_555 O ? H HOH . ? B HOH 108 ? 1_555 74.5 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 21 ? 7 'BINDING SITE FOR RESIDUE CA A 21' AC2 Software B CA 25 ? 3 'BINDING SITE FOR RESIDUE CA B 25' AC3 Software A CA 30 ? 6 'BINDING SITE FOR RESIDUE CA A 30' AC4 Software B CA 49 ? 6 'BINDING SITE FOR RESIDUE CA B 49' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH G . ? HOH A 27 . ? 1_555 ? 2 AC1 7 HOH G . ? HOH A 112 . ? 1_555 ? 3 AC1 7 HOH H . ? HOH B 33 . ? 1_555 ? 4 AC1 7 HOH H . ? HOH B 34 . ? 1_555 ? 5 AC1 7 HOH H . ? HOH B 48 . ? 1_555 ? 6 AC1 7 HOH H . ? HOH B 76 . ? 1_555 ? 7 AC1 7 HOH H . ? HOH B 93 . ? 5_665 ? 8 AC2 3 HOH H . ? HOH B 44 . ? 1_555 ? 9 AC2 3 HOH H . ? HOH B 50 . ? 1_555 ? 10 AC2 3 HOH H . ? HOH B 108 . ? 1_555 ? 11 AC3 6 DC A 8 ? DC A 8 . ? 1_555 ? 12 AC3 6 DC A 8 ? DC A 8 . ? 5_675 ? 13 AC3 6 HOH G . ? HOH A 65 . ? 5_675 ? 14 AC3 6 HOH G . ? HOH A 65 . ? 1_555 ? 15 AC3 6 HOH G . ? HOH A 109 . ? 5_675 ? 16 AC3 6 HOH G . ? HOH A 109 . ? 1_555 ? 17 AC4 6 HOH G . ? HOH A 28 . ? 1_555 ? 18 AC4 6 HOH G . ? HOH A 29 . ? 1_555 ? 19 AC4 6 HOH G . ? HOH A 75 . ? 1_555 ? 20 AC4 6 HOH G . ? HOH A 86 . ? 1_555 ? 21 AC4 6 HOH H . ? HOH B 46 . ? 1_555 ? 22 AC4 6 HOH H . ? HOH B 60 . ? 1_555 ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CA 30 ? D CA . 2 1 A HOH 47 ? G HOH . 3 1 A HOH 74 ? G HOH . 4 1 A HOH 109 ? G HOH . 5 1 A HOH 159 ? G HOH . 6 1 B HOH 39 ? H HOH . 7 1 B HOH 72 ? H HOH . 8 1 B HOH 141 ? H HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 1ZF0 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.089 -0.031 0.637 -20.151 -11.107 0.573 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.183 -0.034 0.409 -13.448 1.706 -0.628 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.129 0.077 0.364 -2.425 -9.759 0.454 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DT 4 1_555 B DA 7 1_555 -0.018 -0.035 0.247 -11.648 -16.081 -6.372 4 A_DT4:DA17_B A 4 ? B 17 ? 20 1 1 A DT 5 1_555 B DA 6 1_555 -0.177 -0.148 0.297 -4.106 -2.756 -0.083 5 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.090 -0.010 -0.225 0.477 -17.736 9.197 6 A_DA6:DT15_B A 6 ? B 15 ? 20 1 1 A DA 7 1_555 B DT 4 1_555 0.222 0.010 -0.061 13.244 -11.275 2.576 7 A_DA7:DT14_B A 7 ? B 14 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.284 -0.092 0.245 2.312 -26.658 1.669 8 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.547 0.024 0.023 -4.769 1.976 1.763 9 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.008 0.074 0.626 13.625 -6.971 0.502 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 0.733 0.782 3.115 1.491 1.513 32.513 1.140 -1.057 3.177 2.698 -2.659 32.580 1 AA_DC1DC2:DG19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.913 0.541 3.008 -6.057 6.860 34.813 -0.063 0.649 3.164 11.227 9.913 35.959 2 AA_DC2DG3:DC18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DT 4 1_555 B DA 7 1_555 -0.985 -0.666 3.592 -0.707 0.319 32.966 -1.232 1.603 3.605 0.562 1.246 32.974 3 AA_DG3DT4:DA17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DT 4 1_555 B DA 7 1_555 A DT 5 1_555 B DA 6 1_555 1.086 0.334 3.085 1.197 0.945 36.015 0.413 -1.593 3.126 1.528 -1.935 36.047 4 AA_DT4DT5:DA16DA17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 -0.406 1.426 3.417 0.540 -3.516 40.251 2.471 0.651 3.281 -5.097 -0.783 40.401 5 AA_DT5DA6:DT15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DA 6 1_555 B DT 5 1_555 A DA 7 1_555 B DT 4 1_555 0.132 -0.288 2.934 -2.619 0.714 31.094 -0.657 -0.691 2.906 1.329 4.874 31.209 6 AA_DA6DA7:DT14DT15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DA 7 1_555 B DT 4 1_555 A DC 8 1_555 B DG 3 1_555 -1.082 -0.164 3.321 -6.299 3.162 36.553 -0.695 0.823 3.429 4.985 9.929 37.203 7 AA_DA7DC8:DG13DT14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 0.524 0.779 3.637 4.235 3.706 37.476 0.662 -0.193 3.729 5.728 -6.546 37.881 8 AA_DC8DG9:DC12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 -1.325 1.087 2.893 -5.831 2.916 30.340 1.507 1.425 3.175 5.493 10.982 31.016 9 AA_DG9DG10:DC11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _pdbx_initial_refinement_model.accession_code 167D _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'NDB ENTRY BDJ055' # _atom_sites.entry_id 1ZF0 _atom_sites.fract_transf_matrix[1][1] 0.030039 _atom_sites.fract_transf_matrix[1][2] 0.017343 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034686 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010681 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P # loop_