HEADER ISOMERASE 02-MAY-05 1ZK6 TITLE NMR SOLUTION STRUCTURE OF B. SUBTILIS PRSA PPIASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOLDASE PROTEIN PRSA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PPIASE DOMAIN; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: PRSA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-2T; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKTH 3678 KEYWDS ALPHA/BETA STRUCTURE, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR H.TOSSAVAINEN,P.PERMI,S.L.PURHONEN,M.SARVAS,I.KILPELAINEN,R.SEPPALA REVDAT 3 02-MAR-22 1ZK6 1 REMARK SEQADV REVDAT 2 24-FEB-09 1ZK6 1 VERSN REVDAT 1 28-MAR-06 1ZK6 0 JRNL AUTH H.TOSSAVAINEN,P.PERMI,S.L.PURHONEN,M.SARVAS,I.KILPELAINEN, JRNL AUTH 2 R.SEPPALA JRNL TITL NMR SOLUTION STRUCTURE AND CHARACTERIZATION OF SUBSTRATE JRNL TITL 2 BINDING SITE OF THE PPIASE DOMAIN OF PRSA PROTEIN FROM JRNL TITL 3 BACILLUS SUBTILIS JRNL REF FEBS LETT. V. 580 1822 2006 JRNL REFN ISSN 0014-5793 JRNL PMID 16516208 JRNL DOI 10.1016/J.FEBSLET.2006.02.042 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, AMBER 8.0 REMARK 3 AUTHORS : VARIAN INC. (VNMR), REMARK 3 PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH, REMARK 3 WEINER,KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZK6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032810. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM PRSA PPIASE DOMAIN REMARK 210 U15N,13C; 20 MM BIS-TRIS BUFFER; REMARK 210 92% H2O, 8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, SPARKY 3.106, CYANA REMARK 210 1.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 GLY A 114 REMARK 465 SER A 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 ARG A 119 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 TYR A 151 -31.02 -130.16 REMARK 500 5 TYR A 151 -34.99 -134.09 REMARK 500 6 TYR A 151 -31.75 -131.38 REMARK 500 6 PRO A 191 103.00 -54.51 REMARK 500 10 THR A 185 0.15 -64.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 1ZK6 A 116 206 UNP P24327 PRSA_BACSU 135 225 SEQADV 1ZK6 GLY A 114 UNP P24327 CLONING ARTIFACT SEQADV 1ZK6 SER A 115 UNP P24327 CLONING ARTIFACT SEQRES 1 A 93 GLY SER GLY LYS ILE ARG ALA SER HIS ILE LEU VAL ALA SEQRES 2 A 93 ASP LYS LYS THR ALA GLU GLU VAL GLU LYS LYS LEU LYS SEQRES 3 A 93 LYS GLY GLU LYS PHE GLU ASP LEU ALA LYS GLU TYR SER SEQRES 4 A 93 THR ASP SER SER ALA SER LYS GLY GLY ASP LEU GLY TRP SEQRES 5 A 93 PHE ALA LYS GLU GLY GLN MET ASP GLU THR PHE SER LYS SEQRES 6 A 93 ALA ALA PHE LYS LEU LYS THR GLY GLU VAL SER ASP PRO SEQRES 7 A 93 VAL LYS THR GLN TYR GLY TYR HIS ILE ILE LYS LYS THR SEQRES 8 A 93 GLU GLU HELIX 1 1 ASP A 127 GLY A 141 1 15 HELIX 2 2 LYS A 143 SER A 152 1 10 HELIX 3 3 ASP A 154 GLY A 160 5 7 HELIX 4 4 THR A 175 LEU A 183 1 9 SHEET 1 A 4 ASP A 162 PHE A 166 0 SHEET 2 A 4 ILE A 118 VAL A 125 -1 N ILE A 118 O PHE A 166 SHEET 3 A 4 TYR A 198 GLU A 205 -1 O LYS A 202 N SER A 121 SHEET 4 A 4 VAL A 192 LYS A 193 -1 N VAL A 192 O HIS A 199 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1