data_1ZL3 # _entry.id 1ZL3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZL3 pdb_00001zl3 10.2210/pdb1zl3/pdb NDB PR0160 ? ? RCSB RCSB032843 ? ? WWPDB D_1000032843 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZL3 _pdbx_database_status.recvd_initial_deposition_date 2005-05-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hoang, C.' 1 'Hamilton, C.S.' 2 'Mueller, E.G.' 3 ;Ferre-D'Amare, A.R. ; 4 # _citation.id primary _citation.title ;Precursor complex structure of pseudouridine synthase TruB suggests coupling of active site perturbations to an RNA-sequestering peripheral protein domain ; _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 14 _citation.page_first 2201 _citation.page_last 2206 _citation.year 2005 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15987897 _citation.pdbx_database_id_DOI 10.1110/ps.051493605 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hoang, C.' 1 ? primary 'Hamilton, C.S.' 2 ? primary 'Mueller, E.G.' 3 ? primary ;Ferre-D'Amare, A.R. ; 4 ? # _cell.entry_id 1ZL3 _cell.length_a 145.433 _cell.length_b 40.753 _cell.length_c 78.803 _cell.angle_alpha 90.00 _cell.angle_beta 110.61 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZL3 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*UP*(FLO) UP*CP*GP*AP*UP*CP*CP*CP*GP*UP*UP*GP*C)-3' ; 7028.193 1 ? ? ? 'T-STEM LOOP RNA' 2 polymer man 'tRNA pseudouridine synthase B' 36637.566 1 4.2.1.70 D48N ? ? 3 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 4 water nat water 18.015 26 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'tRNA pseudouridine 55 synthase, Psi55 synthase, tRNA-uridine isomerase, tRNA pseudouridylate synthase, Protein p35' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'GGCAACGGU(UD5)CGAUCCCGUUGC' GGCAACGGUUCGAUCCCGUUGC B ? 2 'polypeptide(L)' no no ;MGHHHHHHHHHHSSGHIEGRHMDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALNPLATGMLPICLGEATKFSQ YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP REARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE QQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR LVVEYPA ; ;MGHHHHHHHHHHSSGHIEGRHMDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALNPLATGMLPICLGEATKFSQ YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP REARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE QQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR LVVEYPA ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 A n 1 5 A n 1 6 C n 1 7 G n 1 8 G n 1 9 U n 1 10 UD5 n 1 11 C n 1 12 G n 1 13 A n 1 14 U n 1 15 C n 1 16 C n 1 17 C n 1 18 G n 1 19 U n 1 20 U n 1 21 G n 1 22 C n 2 1 MET n 2 2 GLY n 2 3 HIS n 2 4 HIS n 2 5 HIS n 2 6 HIS n 2 7 HIS n 2 8 HIS n 2 9 HIS n 2 10 HIS n 2 11 HIS n 2 12 HIS n 2 13 SER n 2 14 SER n 2 15 GLY n 2 16 HIS n 2 17 ILE n 2 18 GLU n 2 19 GLY n 2 20 ARG n 2 21 HIS n 2 22 MET n 2 23 ASP n 2 24 ILE n 2 25 ASN n 2 26 GLY n 2 27 VAL n 2 28 LEU n 2 29 LEU n 2 30 LEU n 2 31 ASP n 2 32 LYS n 2 33 PRO n 2 34 GLN n 2 35 GLY n 2 36 MET n 2 37 SER n 2 38 SER n 2 39 ASN n 2 40 ASP n 2 41 ALA n 2 42 LEU n 2 43 GLN n 2 44 LYS n 2 45 VAL n 2 46 LYS n 2 47 ARG n 2 48 ILE n 2 49 TYR n 2 50 ASN n 2 51 ALA n 2 52 ASN n 2 53 ARG n 2 54 ALA n 2 55 GLY n 2 56 HIS n 2 57 THR n 2 58 GLY n 2 59 ALA n 2 60 LEU n 2 61 ASN n 2 62 PRO n 2 63 LEU n 2 64 ALA n 2 65 THR n 2 66 GLY n 2 67 MET n 2 68 LEU n 2 69 PRO n 2 70 ILE n 2 71 CYS n 2 72 LEU n 2 73 GLY n 2 74 GLU n 2 75 ALA n 2 76 THR n 2 77 LYS n 2 78 PHE n 2 79 SER n 2 80 GLN n 2 81 TYR n 2 82 LEU n 2 83 LEU n 2 84 ASP n 2 85 SER n 2 86 ASP n 2 87 LYS n 2 88 ARG n 2 89 TYR n 2 90 ARG n 2 91 VAL n 2 92 ILE n 2 93 ALA n 2 94 ARG n 2 95 LEU n 2 96 GLY n 2 97 GLN n 2 98 ARG n 2 99 THR n 2 100 ASP n 2 101 THR n 2 102 SER n 2 103 ASP n 2 104 ALA n 2 105 ASP n 2 106 GLY n 2 107 GLN n 2 108 ILE n 2 109 VAL n 2 110 GLU n 2 111 GLU n 2 112 ARG n 2 113 PRO n 2 114 VAL n 2 115 THR n 2 116 PHE n 2 117 SER n 2 118 ALA n 2 119 GLU n 2 120 GLN n 2 121 LEU n 2 122 ALA n 2 123 ALA n 2 124 ALA n 2 125 LEU n 2 126 ASP n 2 127 THR n 2 128 PHE n 2 129 ARG n 2 130 GLY n 2 131 ASP n 2 132 ILE n 2 133 GLU n 2 134 GLN n 2 135 ILE n 2 136 PRO n 2 137 SER n 2 138 MET n 2 139 TYR n 2 140 SER n 2 141 ALA n 2 142 LEU n 2 143 LYS n 2 144 TYR n 2 145 GLN n 2 146 GLY n 2 147 LYS n 2 148 LYS n 2 149 LEU n 2 150 TYR n 2 151 GLU n 2 152 TYR n 2 153 ALA n 2 154 ARG n 2 155 GLN n 2 156 GLY n 2 157 ILE n 2 158 GLU n 2 159 VAL n 2 160 PRO n 2 161 ARG n 2 162 GLU n 2 163 ALA n 2 164 ARG n 2 165 PRO n 2 166 ILE n 2 167 THR n 2 168 VAL n 2 169 TYR n 2 170 GLU n 2 171 LEU n 2 172 LEU n 2 173 PHE n 2 174 ILE n 2 175 ARG n 2 176 HIS n 2 177 GLU n 2 178 GLY n 2 179 ASN n 2 180 GLU n 2 181 LEU n 2 182 GLU n 2 183 LEU n 2 184 GLU n 2 185 ILE n 2 186 HIS n 2 187 CYS n 2 188 SER n 2 189 LYS n 2 190 GLY n 2 191 THR n 2 192 TYR n 2 193 ILE n 2 194 ARG n 2 195 THR n 2 196 ILE n 2 197 ILE n 2 198 ASP n 2 199 ASP n 2 200 LEU n 2 201 GLY n 2 202 GLU n 2 203 LYS n 2 204 LEU n 2 205 GLY n 2 206 CYS n 2 207 GLY n 2 208 ALA n 2 209 HIS n 2 210 VAL n 2 211 ILE n 2 212 TYR n 2 213 LEU n 2 214 ARG n 2 215 ARG n 2 216 LEU n 2 217 ALA n 2 218 VAL n 2 219 SER n 2 220 LYS n 2 221 TYR n 2 222 PRO n 2 223 VAL n 2 224 GLU n 2 225 ARG n 2 226 MET n 2 227 VAL n 2 228 THR n 2 229 LEU n 2 230 GLU n 2 231 HIS n 2 232 LEU n 2 233 ARG n 2 234 GLU n 2 235 LEU n 2 236 VAL n 2 237 GLU n 2 238 GLN n 2 239 ALA n 2 240 GLU n 2 241 GLN n 2 242 GLN n 2 243 ASP n 2 244 ILE n 2 245 PRO n 2 246 ALA n 2 247 ALA n 2 248 GLU n 2 249 LEU n 2 250 LEU n 2 251 ASP n 2 252 PRO n 2 253 LEU n 2 254 LEU n 2 255 MET n 2 256 PRO n 2 257 MET n 2 258 ASP n 2 259 SER n 2 260 PRO n 2 261 ALA n 2 262 SER n 2 263 ASP n 2 264 TYR n 2 265 PRO n 2 266 VAL n 2 267 VAL n 2 268 ASN n 2 269 LEU n 2 270 PRO n 2 271 LEU n 2 272 THR n 2 273 SER n 2 274 SER n 2 275 VAL n 2 276 TYR n 2 277 PHE n 2 278 LYS n 2 279 ASN n 2 280 GLY n 2 281 ASN n 2 282 PRO n 2 283 VAL n 2 284 ARG n 2 285 THR n 2 286 SER n 2 287 GLY n 2 288 ALA n 2 289 PRO n 2 290 LEU n 2 291 GLU n 2 292 GLY n 2 293 LEU n 2 294 VAL n 2 295 ARG n 2 296 VAL n 2 297 THR n 2 298 GLU n 2 299 GLY n 2 300 GLU n 2 301 ASN n 2 302 GLY n 2 303 LYS n 2 304 PHE n 2 305 ILE n 2 306 GLY n 2 307 MET n 2 308 GLY n 2 309 GLU n 2 310 ILE n 2 311 ASP n 2 312 ASP n 2 313 GLU n 2 314 GLY n 2 315 ARG n 2 316 VAL n 2 317 ALA n 2 318 PRO n 2 319 ARG n 2 320 ARG n 2 321 LEU n 2 322 VAL n 2 323 VAL n 2 324 GLU n 2 325 TYR n 2 326 PRO n 2 327 ALA n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene truB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TRUB_ECOLI P60340 2 ;DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTS DADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA ; 10 ? 2 PDB 1ZL3 1ZL3 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZL3 A 21 ? 327 ? P60340 10 ? 314 ? 8 314 2 2 1ZL3 B 1 ? 22 ? 1ZL3 401 ? 422 ? 401 422 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1ZL3 MET A 1 ? UNP P60340 ? ? 'cloning artifact' -12 1 1 1ZL3 GLY A 2 ? UNP P60340 ? ? 'cloning artifact' -11 2 1 1ZL3 HIS A 3 ? UNP P60340 ? ? 'cloning artifact' -10 3 1 1ZL3 HIS A 4 ? UNP P60340 ? ? 'cloning artifact' -9 4 1 1ZL3 HIS A 5 ? UNP P60340 ? ? 'cloning artifact' -8 5 1 1ZL3 HIS A 6 ? UNP P60340 ? ? 'cloning artifact' -7 6 1 1ZL3 HIS A 7 ? UNP P60340 ? ? 'cloning artifact' -6 7 1 1ZL3 HIS A 8 ? UNP P60340 ? ? 'cloning artifact' -5 8 1 1ZL3 HIS A 9 ? UNP P60340 ? ? 'cloning artifact' -4 9 1 1ZL3 HIS A 10 ? UNP P60340 ? ? 'cloning artifact' -3 10 1 1ZL3 HIS A 11 ? UNP P60340 ? ? 'cloning artifact' -2 11 1 1ZL3 HIS A 12 ? UNP P60340 ? ? 'cloning artifact' -1 12 1 1ZL3 SER A 13 ? UNP P60340 ? ? 'cloning artifact' 0 13 1 1ZL3 SER A 14 ? UNP P60340 ? ? 'cloning artifact' 1 14 1 1ZL3 GLY A 15 ? UNP P60340 ? ? 'cloning artifact' 2 15 1 1ZL3 HIS A 16 ? UNP P60340 ? ? 'cloning artifact' 3 16 1 1ZL3 ILE A 17 ? UNP P60340 ? ? 'cloning artifact' 4 17 1 1ZL3 GLU A 18 ? UNP P60340 ? ? 'cloning artifact' 5 18 1 1ZL3 HIS A 21 ? UNP P60340 ? ? 'cloning artifact' 8 19 1 1ZL3 MET A 22 ? UNP P60340 ? ? 'cloning artifact' 9 20 1 1ZL3 ASN A 61 ? UNP P60340 ASP 48 'engineered mutation' 48 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 UD5 'RNA linking' n 5-FLUOROURIDINE ? 'C9 H12 F N2 O8 P' 326.172 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ZL3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 0.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.50 _exptl_crystal_grow.pdbx_details ;ammonium sulfate [1.7M], PEG400 [2%], Hepes-KOH pH 7.5 [0.1M] and TCEP [1 mM], pH 7.50, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-03-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SINGLE CRYSTAL, CYLINDRICALLY BENT, SI(220)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1ZL3 _reflns.observed_criterion_sigma_I 3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.800 _reflns.number_obs 10935 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.091 _reflns.pdbx_Rsym_value 0.091 _reflns.pdbx_netI_over_sigmaI 23.6000 _reflns.B_iso_Wilson_estimate 63.80 _reflns.pdbx_redundancy 6.340 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.341 _reflns_shell.pdbx_Rsym_value 0.341 _reflns_shell.meanI_over_sigI_obs 3.600 _reflns_shell.pdbx_redundancy 4.71 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ZL3 _refine.ls_number_reflns_obs 10935 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.3 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.92 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_all 0.202 _refine.ls_R_factor_R_work 0.202 _refine.ls_R_factor_R_free 0.264 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.900 _refine.ls_number_reflns_R_free 1083 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 50.70 _refine.aniso_B[1][1] -16.68000 _refine.aniso_B[2][2] 28.39000 _refine.aniso_B[3][3] -11.71000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.35000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.32 _refine.solvent_model_param_bsol 30.18 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1K8W' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1ZL3 _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_sigma_a_obs 0.46 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.46 _refine_analyze.Luzzati_sigma_a_free 0.56 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2325 _refine_hist.pdbx_number_atoms_nucleic_acid 465 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 26 _refine_hist.number_atoms_total 2831 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 19.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.30 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.70 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.45 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.90 _refine_ls_shell.number_reflns_R_work 988 _refine_ls_shell.R_factor_R_work 0.3432 _refine_ls_shell.percent_reflns_obs 99.40 _refine_ls_shell.R_factor_R_free 0.4332 _refine_ls_shell.R_factor_R_free_error 0.045 _refine_ls_shell.percent_reflns_R_free 8.63 _refine_ls_shell.number_reflns_R_free 94 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA-5FU_REP.PARAM DNA-RNA-5FU.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1ZL3 _struct.title 'Coupling of active site motions and RNA binding' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZL3 _struct_keywords.pdbx_keywords LYASE/RNA _struct_keywords.text 'RNA-modification, inter-domain coupling, product release, LYASE-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER B 37 ? TYR B 49 ? SER A 24 TYR A 36 1 ? 13 HELX_P HELX_P2 2 GLU B 74 ? PHE B 78 ? GLU A 61 PHE A 65 5 ? 5 HELX_P HELX_P3 3 SER B 79 ? ASP B 84 ? SER A 66 ASP A 71 1 ? 6 HELX_P HELX_P4 4 SER B 117 ? PHE B 128 ? SER A 104 PHE A 115 1 ? 12 HELX_P HELX_P5 5 LEU B 149 ? GLN B 155 ? LEU A 136 GLN A 142 1 ? 7 HELX_P HELX_P6 6 TYR B 192 ? LEU B 204 ? TYR A 179 LEU A 191 1 ? 13 HELX_P HELX_P7 7 PRO B 222 ? MET B 226 ? PRO A 209 MET A 213 5 ? 5 HELX_P HELX_P8 8 LEU B 229 ? ASP B 243 ? LEU A 216 ASP A 230 1 ? 15 HELX_P HELX_P9 9 PRO B 245 ? ASP B 251 ? PRO A 232 ASP A 238 1 ? 7 HELX_P HELX_P10 10 PRO B 252 ? LEU B 254 ? PRO A 239 LEU A 241 5 ? 3 HELX_P HELX_P11 11 ASP B 258 ? SER B 262 ? ASP A 245 SER A 249 5 ? 5 HELX_P HELX_P12 12 PRO B 270 ? LYS B 278 ? PRO A 257 LYS A 265 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A U 9 "O3'" ? ? ? 1_555 A UD5 10 P ? ? B U 409 B UD5 410 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale one ? A UD5 10 "O3'" ? ? ? 1_555 A C 11 P ? ? B UD5 410 B C 411 1_555 ? ? ? ? ? ? ? 1.593 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 22 N3 ? ? B G 402 B C 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 22 O2 ? ? B G 402 B C 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 22 N4 ? ? B G 402 B C 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 21 N1 ? ? B C 403 B G 421 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 21 O6 ? ? B C 403 B G 421 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 21 N2 ? ? B C 403 B G 421 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 20 N3 ? ? B A 404 B U 420 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 20 O4 ? ? B A 404 B U 420 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 19 N3 ? ? B A 405 B U 419 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 19 O4 ? ? B A 405 B U 419 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 18 N1 ? ? B C 406 B G 418 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 18 O6 ? ? B C 406 B G 418 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 18 N2 ? ? B C 406 B G 418 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 17 N3 ? ? B G 407 B C 417 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 17 O2 ? ? B G 407 B C 417 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 17 N4 ? ? B G 407 B C 417 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 16 N3 ? ? B G 408 B C 416 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 16 O2 ? ? B G 408 B C 416 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 16 N4 ? ? B G 408 B C 416 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 13 N7 ? ? B U 409 B A 413 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A U 9 O2 ? ? ? 1_555 A A 13 N6 ? ? B U 409 B A 413 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 4 ? C ? 2 ? D ? 2 ? E ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA B 54 ? HIS B 56 ? ALA A 41 HIS A 43 A 2 THR B 65 ? LEU B 72 ? THR A 52 LEU A 59 A 3 ALA B 208 ? VAL B 218 ? ALA A 195 VAL A 205 A 4 LYS B 87 ? LEU B 95 ? LYS A 74 LEU A 82 A 5 GLU B 180 ? CYS B 187 ? GLU A 167 CYS A 174 A 6 ARG B 164 ? GLU B 177 ? ARG A 151 GLU A 164 A 7 GLY B 130 ? GLN B 134 ? GLY A 117 GLN A 121 B 1 ALA B 54 ? HIS B 56 ? ALA A 41 HIS A 43 B 2 THR B 65 ? LEU B 72 ? THR A 52 LEU A 59 B 3 GLY B 26 ? LYS B 32 ? GLY A 13 LYS A 19 B 4 VAL B 227 ? THR B 228 ? VAL A 214 THR A 215 C 1 GLN B 97 ? THR B 99 ? GLN A 84 THR A 86 C 2 ILE B 108 ? GLU B 111 ? ILE A 95 GLU A 98 D 1 LYS B 143 ? TYR B 144 ? LYS A 130 TYR A 131 D 2 LYS B 147 ? LYS B 148 ? LYS A 134 LYS A 135 E 1 VAL B 266 ? LEU B 269 ? VAL A 253 LEU A 256 E 2 LEU B 293 ? GLU B 298 ? LEU A 280 GLU A 285 E 3 LYS B 303 ? ILE B 310 ? LYS A 290 ILE A 297 E 4 VAL B 316 ? LEU B 321 ? VAL A 303 LEU A 308 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY B 55 ? N GLY A 42 O CYS B 71 ? O CYS A 58 A 2 3 N THR B 65 ? N THR A 52 O ARG B 215 ? O ARG A 202 A 3 4 O HIS B 209 ? O HIS A 196 N ARG B 94 ? N ARG A 81 A 4 5 N VAL B 91 ? N VAL A 78 O LEU B 183 ? O LEU A 170 A 5 6 O GLU B 184 ? O GLU A 171 N LEU B 172 ? N LEU A 159 A 6 7 O ARG B 164 ? O ARG A 151 N GLN B 134 ? N GLN A 121 B 1 2 N GLY B 55 ? N GLY A 42 O CYS B 71 ? O CYS A 58 B 2 3 O LEU B 72 ? O LEU A 59 N GLY B 26 ? N GLY A 13 B 3 4 N ASP B 31 ? N ASP A 18 O VAL B 227 ? O VAL A 214 C 1 2 N ARG B 98 ? N ARG A 85 O VAL B 109 ? O VAL A 96 D 1 2 N TYR B 144 ? N TYR A 131 O LYS B 147 ? O LYS A 134 E 1 2 N VAL B 267 ? N VAL A 254 O THR B 297 ? O THR A 284 E 2 3 N VAL B 294 ? N VAL A 281 O GLY B 308 ? O GLY A 295 E 3 4 N MET B 307 ? N MET A 294 O ARG B 319 ? O ARG A 306 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 901 ? 4 'BINDING SITE FOR RESIDUE SO4 A 901' AC2 Software A SO4 902 ? 5 'BINDING SITE FOR RESIDUE SO4 A 902' AC3 Software A SO4 903 ? 2 'BINDING SITE FOR RESIDUE SO4 A 903' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 LYS B 44 ? LYS A 31 . ? 1_555 ? 2 AC1 4 ARG B 47 ? ARG A 34 . ? 1_555 ? 3 AC1 4 ARG B 233 ? ARG A 220 . ? 1_555 ? 4 AC1 4 SO4 D . ? SO4 A 902 . ? 1_555 ? 5 AC2 5 MET B 36 ? MET A 23 . ? 1_555 ? 6 AC2 5 LYS B 44 ? LYS A 31 . ? 1_555 ? 7 AC2 5 LEU B 229 ? LEU A 216 . ? 1_555 ? 8 AC2 5 ARG B 233 ? ARG A 220 . ? 1_555 ? 9 AC2 5 SO4 C . ? SO4 A 901 . ? 1_555 ? 10 AC3 2 THR B 285 ? THR A 272 . ? 1_555 ? 11 AC3 2 SER B 286 ? SER A 273 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ZL3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ZL3 _atom_sites.fract_transf_matrix[1][1] 0.006876 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002586 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024538 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013558 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 401 401 G G B . n A 1 2 G 2 402 402 G G B . n A 1 3 C 3 403 403 C C B . n A 1 4 A 4 404 404 A A B . n A 1 5 A 5 405 405 A A B . n A 1 6 C 6 406 406 C C B . n A 1 7 G 7 407 407 G G B . n A 1 8 G 8 408 408 G G B . n A 1 9 U 9 409 409 U U B . n A 1 10 UD5 10 410 410 UD5 +U B . n A 1 11 C 11 411 411 C C B . n A 1 12 G 12 412 412 G G B . n A 1 13 A 13 413 413 A A B . n A 1 14 U 14 414 414 U U B . n A 1 15 C 15 415 415 C C B . n A 1 16 C 16 416 416 C C B . n A 1 17 C 17 417 417 C C B . n A 1 18 G 18 418 418 G G B . n A 1 19 U 19 419 419 U U B . n A 1 20 U 20 420 420 U U B . n A 1 21 G 21 421 421 G G B . n A 1 22 C 22 422 422 C C B . n B 2 1 MET 1 -12 ? ? ? A . n B 2 2 GLY 2 -11 ? ? ? A . n B 2 3 HIS 3 -10 ? ? ? A . n B 2 4 HIS 4 -9 ? ? ? A . n B 2 5 HIS 5 -8 ? ? ? A . n B 2 6 HIS 6 -7 ? ? ? A . n B 2 7 HIS 7 -6 ? ? ? A . n B 2 8 HIS 8 -5 ? ? ? A . n B 2 9 HIS 9 -4 ? ? ? A . n B 2 10 HIS 10 -3 ? ? ? A . n B 2 11 HIS 11 -2 ? ? ? A . n B 2 12 HIS 12 -1 ? ? ? A . n B 2 13 SER 13 0 ? ? ? A . n B 2 14 SER 14 1 ? ? ? A . n B 2 15 GLY 15 2 ? ? ? A . n B 2 16 HIS 16 3 ? ? ? A . n B 2 17 ILE 17 4 ? ? ? A . n B 2 18 GLU 18 5 ? ? ? A . n B 2 19 GLY 19 6 ? ? ? A . n B 2 20 ARG 20 7 ? ? ? A . n B 2 21 HIS 21 8 ? ? ? A . n B 2 22 MET 22 9 9 MET MET A . n B 2 23 ASP 23 10 10 ASP ASP A . n B 2 24 ILE 24 11 11 ILE ILE A . n B 2 25 ASN 25 12 12 ASN ASN A . n B 2 26 GLY 26 13 13 GLY GLY A . n B 2 27 VAL 27 14 14 VAL VAL A . n B 2 28 LEU 28 15 15 LEU LEU A . n B 2 29 LEU 29 16 16 LEU LEU A . n B 2 30 LEU 30 17 17 LEU LEU A . n B 2 31 ASP 31 18 18 ASP ASP A . n B 2 32 LYS 32 19 19 LYS LYS A . n B 2 33 PRO 33 20 20 PRO PRO A . n B 2 34 GLN 34 21 21 GLN GLN A . n B 2 35 GLY 35 22 22 GLY GLY A . n B 2 36 MET 36 23 23 MET MET A . n B 2 37 SER 37 24 24 SER SER A . n B 2 38 SER 38 25 25 SER SER A . n B 2 39 ASN 39 26 26 ASN ASN A . n B 2 40 ASP 40 27 27 ASP ASP A . n B 2 41 ALA 41 28 28 ALA ALA A . n B 2 42 LEU 42 29 29 LEU LEU A . n B 2 43 GLN 43 30 30 GLN GLN A . n B 2 44 LYS 44 31 31 LYS LYS A . n B 2 45 VAL 45 32 32 VAL VAL A . n B 2 46 LYS 46 33 33 LYS LYS A . n B 2 47 ARG 47 34 34 ARG ARG A . n B 2 48 ILE 48 35 35 ILE ILE A . n B 2 49 TYR 49 36 36 TYR TYR A . n B 2 50 ASN 50 37 37 ASN ASN A . n B 2 51 ALA 51 38 38 ALA ALA A . n B 2 52 ASN 52 39 39 ASN ASN A . n B 2 53 ARG 53 40 40 ARG ARG A . n B 2 54 ALA 54 41 41 ALA ALA A . n B 2 55 GLY 55 42 42 GLY GLY A . n B 2 56 HIS 56 43 43 HIS HIS A . n B 2 57 THR 57 44 44 THR THR A . n B 2 58 GLY 58 45 45 GLY GLY A . n B 2 59 ALA 59 46 46 ALA ALA A . n B 2 60 LEU 60 47 47 LEU LEU A . n B 2 61 ASN 61 48 48 ASN ASN A . n B 2 62 PRO 62 49 49 PRO PRO A . n B 2 63 LEU 63 50 50 LEU LEU A . n B 2 64 ALA 64 51 51 ALA ALA A . n B 2 65 THR 65 52 52 THR THR A . n B 2 66 GLY 66 53 53 GLY GLY A . n B 2 67 MET 67 54 54 MET MET A . n B 2 68 LEU 68 55 55 LEU LEU A . n B 2 69 PRO 69 56 56 PRO PRO A . n B 2 70 ILE 70 57 57 ILE ILE A . n B 2 71 CYS 71 58 58 CYS CYS A . n B 2 72 LEU 72 59 59 LEU LEU A . n B 2 73 GLY 73 60 60 GLY GLY A . n B 2 74 GLU 74 61 61 GLU GLU A . n B 2 75 ALA 75 62 62 ALA ALA A . n B 2 76 THR 76 63 63 THR THR A . n B 2 77 LYS 77 64 64 LYS LYS A . n B 2 78 PHE 78 65 65 PHE PHE A . n B 2 79 SER 79 66 66 SER SER A . n B 2 80 GLN 80 67 67 GLN GLN A . n B 2 81 TYR 81 68 68 TYR TYR A . n B 2 82 LEU 82 69 69 LEU LEU A . n B 2 83 LEU 83 70 70 LEU LEU A . n B 2 84 ASP 84 71 71 ASP ASP A . n B 2 85 SER 85 72 72 SER SER A . n B 2 86 ASP 86 73 73 ASP ASP A . n B 2 87 LYS 87 74 74 LYS LYS A . n B 2 88 ARG 88 75 75 ARG ARG A . n B 2 89 TYR 89 76 76 TYR TYR A . n B 2 90 ARG 90 77 77 ARG ARG A . n B 2 91 VAL 91 78 78 VAL VAL A . n B 2 92 ILE 92 79 79 ILE ILE A . n B 2 93 ALA 93 80 80 ALA ALA A . n B 2 94 ARG 94 81 81 ARG ARG A . n B 2 95 LEU 95 82 82 LEU LEU A . n B 2 96 GLY 96 83 83 GLY GLY A . n B 2 97 GLN 97 84 84 GLN GLN A . n B 2 98 ARG 98 85 85 ARG ARG A . n B 2 99 THR 99 86 86 THR THR A . n B 2 100 ASP 100 87 87 ASP ASP A . n B 2 101 THR 101 88 88 THR THR A . n B 2 102 SER 102 89 89 SER SER A . n B 2 103 ASP 103 90 90 ASP ASP A . n B 2 104 ALA 104 91 91 ALA ALA A . n B 2 105 ASP 105 92 92 ASP ASP A . n B 2 106 GLY 106 93 93 GLY GLY A . n B 2 107 GLN 107 94 94 GLN GLN A . n B 2 108 ILE 108 95 95 ILE ILE A . n B 2 109 VAL 109 96 96 VAL VAL A . n B 2 110 GLU 110 97 97 GLU GLU A . n B 2 111 GLU 111 98 98 GLU GLU A . n B 2 112 ARG 112 99 99 ARG ARG A . n B 2 113 PRO 113 100 100 PRO PRO A . n B 2 114 VAL 114 101 101 VAL VAL A . n B 2 115 THR 115 102 102 THR THR A . n B 2 116 PHE 116 103 103 PHE PHE A . n B 2 117 SER 117 104 104 SER SER A . n B 2 118 ALA 118 105 105 ALA ALA A . n B 2 119 GLU 119 106 106 GLU GLU A . n B 2 120 GLN 120 107 107 GLN GLN A . n B 2 121 LEU 121 108 108 LEU LEU A . n B 2 122 ALA 122 109 109 ALA ALA A . n B 2 123 ALA 123 110 110 ALA ALA A . n B 2 124 ALA 124 111 111 ALA ALA A . n B 2 125 LEU 125 112 112 LEU LEU A . n B 2 126 ASP 126 113 113 ASP ASP A . n B 2 127 THR 127 114 114 THR THR A . n B 2 128 PHE 128 115 115 PHE PHE A . n B 2 129 ARG 129 116 116 ARG ARG A . n B 2 130 GLY 130 117 117 GLY GLY A . n B 2 131 ASP 131 118 118 ASP ASP A . n B 2 132 ILE 132 119 119 ILE ILE A . n B 2 133 GLU 133 120 120 GLU GLU A . n B 2 134 GLN 134 121 121 GLN GLN A . n B 2 135 ILE 135 122 122 ILE ILE A . n B 2 136 PRO 136 123 123 PRO PRO A . n B 2 137 SER 137 124 124 SER SER A . n B 2 138 MET 138 125 125 MET MET A . n B 2 139 TYR 139 126 126 TYR TYR A . n B 2 140 SER 140 127 127 SER SER A . n B 2 141 ALA 141 128 128 ALA ALA A . n B 2 142 LEU 142 129 129 LEU LEU A . n B 2 143 LYS 143 130 130 LYS LYS A . n B 2 144 TYR 144 131 131 TYR TYR A . n B 2 145 GLN 145 132 132 GLN GLN A . n B 2 146 GLY 146 133 133 GLY GLY A . n B 2 147 LYS 147 134 134 LYS LYS A . n B 2 148 LYS 148 135 135 LYS LYS A . n B 2 149 LEU 149 136 136 LEU LEU A . n B 2 150 TYR 150 137 137 TYR TYR A . n B 2 151 GLU 151 138 138 GLU GLU A . n B 2 152 TYR 152 139 139 TYR TYR A . n B 2 153 ALA 153 140 140 ALA ALA A . n B 2 154 ARG 154 141 141 ARG ARG A . n B 2 155 GLN 155 142 142 GLN GLN A . n B 2 156 GLY 156 143 143 GLY GLY A . n B 2 157 ILE 157 144 144 ILE ILE A . n B 2 158 GLU 158 145 145 GLU GLU A . n B 2 159 VAL 159 146 146 VAL VAL A . n B 2 160 PRO 160 147 147 PRO PRO A . n B 2 161 ARG 161 148 148 ARG ARG A . n B 2 162 GLU 162 149 149 GLU GLU A . n B 2 163 ALA 163 150 150 ALA ALA A . n B 2 164 ARG 164 151 151 ARG ARG A . n B 2 165 PRO 165 152 152 PRO PRO A . n B 2 166 ILE 166 153 153 ILE ILE A . n B 2 167 THR 167 154 154 THR THR A . n B 2 168 VAL 168 155 155 VAL VAL A . n B 2 169 TYR 169 156 156 TYR TYR A . n B 2 170 GLU 170 157 157 GLU GLU A . n B 2 171 LEU 171 158 158 LEU LEU A . n B 2 172 LEU 172 159 159 LEU LEU A . n B 2 173 PHE 173 160 160 PHE PHE A . n B 2 174 ILE 174 161 161 ILE ILE A . n B 2 175 ARG 175 162 162 ARG ARG A . n B 2 176 HIS 176 163 163 HIS HIS A . n B 2 177 GLU 177 164 164 GLU GLU A . n B 2 178 GLY 178 165 165 GLY GLY A . n B 2 179 ASN 179 166 166 ASN ASN A . n B 2 180 GLU 180 167 167 GLU GLU A . n B 2 181 LEU 181 168 168 LEU LEU A . n B 2 182 GLU 182 169 169 GLU GLU A . n B 2 183 LEU 183 170 170 LEU LEU A . n B 2 184 GLU 184 171 171 GLU GLU A . n B 2 185 ILE 185 172 172 ILE ILE A . n B 2 186 HIS 186 173 173 HIS HIS A . n B 2 187 CYS 187 174 174 CYS CYS A . n B 2 188 SER 188 175 175 SER SER A . n B 2 189 LYS 189 176 176 LYS LYS A . n B 2 190 GLY 190 177 177 GLY GLY A . n B 2 191 THR 191 178 178 THR THR A . n B 2 192 TYR 192 179 179 TYR TYR A . n B 2 193 ILE 193 180 180 ILE ILE A . n B 2 194 ARG 194 181 181 ARG ARG A . n B 2 195 THR 195 182 182 THR THR A . n B 2 196 ILE 196 183 183 ILE ILE A . n B 2 197 ILE 197 184 184 ILE ILE A . n B 2 198 ASP 198 185 185 ASP ASP A . n B 2 199 ASP 199 186 186 ASP ASP A . n B 2 200 LEU 200 187 187 LEU LEU A . n B 2 201 GLY 201 188 188 GLY GLY A . n B 2 202 GLU 202 189 189 GLU GLU A . n B 2 203 LYS 203 190 190 LYS LYS A . n B 2 204 LEU 204 191 191 LEU LEU A . n B 2 205 GLY 205 192 192 GLY GLY A . n B 2 206 CYS 206 193 193 CYS CYS A . n B 2 207 GLY 207 194 194 GLY GLY A . n B 2 208 ALA 208 195 195 ALA ALA A . n B 2 209 HIS 209 196 196 HIS HIS A . n B 2 210 VAL 210 197 197 VAL VAL A . n B 2 211 ILE 211 198 198 ILE ILE A . n B 2 212 TYR 212 199 199 TYR TYR A . n B 2 213 LEU 213 200 200 LEU LEU A . n B 2 214 ARG 214 201 201 ARG ARG A . n B 2 215 ARG 215 202 202 ARG ARG A . n B 2 216 LEU 216 203 203 LEU LEU A . n B 2 217 ALA 217 204 204 ALA ALA A . n B 2 218 VAL 218 205 205 VAL VAL A . n B 2 219 SER 219 206 206 SER SER A . n B 2 220 LYS 220 207 207 LYS LYS A . n B 2 221 TYR 221 208 208 TYR TYR A . n B 2 222 PRO 222 209 209 PRO PRO A . n B 2 223 VAL 223 210 210 VAL VAL A . n B 2 224 GLU 224 211 211 GLU GLU A . n B 2 225 ARG 225 212 212 ARG ARG A . n B 2 226 MET 226 213 213 MET MET A . n B 2 227 VAL 227 214 214 VAL VAL A . n B 2 228 THR 228 215 215 THR THR A . n B 2 229 LEU 229 216 216 LEU LEU A . n B 2 230 GLU 230 217 217 GLU GLU A . n B 2 231 HIS 231 218 218 HIS HIS A . n B 2 232 LEU 232 219 219 LEU LEU A . n B 2 233 ARG 233 220 220 ARG ARG A . n B 2 234 GLU 234 221 221 GLU GLU A . n B 2 235 LEU 235 222 222 LEU LEU A . n B 2 236 VAL 236 223 223 VAL VAL A . n B 2 237 GLU 237 224 224 GLU GLU A . n B 2 238 GLN 238 225 225 GLN GLN A . n B 2 239 ALA 239 226 226 ALA ALA A . n B 2 240 GLU 240 227 227 GLU GLU A . n B 2 241 GLN 241 228 228 GLN GLN A . n B 2 242 GLN 242 229 229 GLN GLN A . n B 2 243 ASP 243 230 230 ASP ASP A . n B 2 244 ILE 244 231 231 ILE ILE A . n B 2 245 PRO 245 232 232 PRO PRO A . n B 2 246 ALA 246 233 233 ALA ALA A . n B 2 247 ALA 247 234 234 ALA ALA A . n B 2 248 GLU 248 235 235 GLU GLU A . n B 2 249 LEU 249 236 236 LEU LEU A . n B 2 250 LEU 250 237 237 LEU LEU A . n B 2 251 ASP 251 238 238 ASP ASP A . n B 2 252 PRO 252 239 239 PRO PRO A . n B 2 253 LEU 253 240 240 LEU LEU A . n B 2 254 LEU 254 241 241 LEU LEU A . n B 2 255 MET 255 242 242 MET MET A . n B 2 256 PRO 256 243 243 PRO PRO A . n B 2 257 MET 257 244 244 MET MET A . n B 2 258 ASP 258 245 245 ASP ASP A . n B 2 259 SER 259 246 246 SER SER A . n B 2 260 PRO 260 247 247 PRO PRO A . n B 2 261 ALA 261 248 248 ALA ALA A . n B 2 262 SER 262 249 249 SER SER A . n B 2 263 ASP 263 250 250 ASP ASP A . n B 2 264 TYR 264 251 251 TYR TYR A . n B 2 265 PRO 265 252 252 PRO PRO A . n B 2 266 VAL 266 253 253 VAL VAL A . n B 2 267 VAL 267 254 254 VAL VAL A . n B 2 268 ASN 268 255 255 ASN ASN A . n B 2 269 LEU 269 256 256 LEU LEU A . n B 2 270 PRO 270 257 257 PRO PRO A . n B 2 271 LEU 271 258 258 LEU LEU A . n B 2 272 THR 272 259 259 THR THR A . n B 2 273 SER 273 260 260 SER SER A . n B 2 274 SER 274 261 261 SER SER A . n B 2 275 VAL 275 262 262 VAL VAL A . n B 2 276 TYR 276 263 263 TYR TYR A . n B 2 277 PHE 277 264 264 PHE PHE A . n B 2 278 LYS 278 265 265 LYS LYS A . n B 2 279 ASN 279 266 266 ASN ASN A . n B 2 280 GLY 280 267 267 GLY GLY A . n B 2 281 ASN 281 268 268 ASN ASN A . n B 2 282 PRO 282 269 269 PRO PRO A . n B 2 283 VAL 283 270 270 VAL VAL A . n B 2 284 ARG 284 271 271 ARG ARG A . n B 2 285 THR 285 272 272 THR THR A . n B 2 286 SER 286 273 273 SER SER A . n B 2 287 GLY 287 274 274 GLY GLY A . n B 2 288 ALA 288 275 275 ALA ALA A . n B 2 289 PRO 289 276 276 PRO PRO A . n B 2 290 LEU 290 277 277 LEU LEU A . n B 2 291 GLU 291 278 278 GLU GLU A . n B 2 292 GLY 292 279 279 GLY GLY A . n B 2 293 LEU 293 280 280 LEU LEU A . n B 2 294 VAL 294 281 281 VAL VAL A . n B 2 295 ARG 295 282 282 ARG ARG A . n B 2 296 VAL 296 283 283 VAL VAL A . n B 2 297 THR 297 284 284 THR THR A . n B 2 298 GLU 298 285 285 GLU GLU A . n B 2 299 GLY 299 286 286 GLY GLY A . n B 2 300 GLU 300 287 287 GLU GLU A . n B 2 301 ASN 301 288 288 ASN ASN A . n B 2 302 GLY 302 289 289 GLY GLY A . n B 2 303 LYS 303 290 290 LYS LYS A . n B 2 304 PHE 304 291 291 PHE PHE A . n B 2 305 ILE 305 292 292 ILE ILE A . n B 2 306 GLY 306 293 293 GLY GLY A . n B 2 307 MET 307 294 294 MET MET A . n B 2 308 GLY 308 295 295 GLY GLY A . n B 2 309 GLU 309 296 296 GLU GLU A . n B 2 310 ILE 310 297 297 ILE ILE A . n B 2 311 ASP 311 298 298 ASP ASP A . n B 2 312 ASP 312 299 299 ASP ASP A . n B 2 313 GLU 313 300 300 GLU GLU A . n B 2 314 GLY 314 301 301 GLY GLY A . n B 2 315 ARG 315 302 302 ARG ARG A . n B 2 316 VAL 316 303 303 VAL VAL A . n B 2 317 ALA 317 304 304 ALA ALA A . n B 2 318 PRO 318 305 305 PRO PRO A . n B 2 319 ARG 319 306 306 ARG ARG A . n B 2 320 ARG 320 307 307 ARG ARG A . n B 2 321 LEU 321 308 308 LEU LEU A . n B 2 322 VAL 322 309 309 VAL VAL A . n B 2 323 VAL 323 310 310 VAL VAL A . n B 2 324 GLU 324 311 ? ? ? A . n B 2 325 TYR 325 312 ? ? ? A . n B 2 326 PRO 326 313 ? ? ? A . n B 2 327 ALA 327 314 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 901 901 SO4 SO4 A . D 3 SO4 1 902 902 SO4 SO4 A . E 3 SO4 1 903 903 SO4 SO4 A . F 4 HOH 1 503 503 HOH HOH B . F 4 HOH 2 505 505 HOH HOH B . F 4 HOH 3 510 510 HOH HOH B . F 4 HOH 4 514 514 HOH HOH B . F 4 HOH 5 516 516 HOH HOH B . F 4 HOH 6 520 520 HOH HOH B . F 4 HOH 7 521 521 HOH HOH B . G 4 HOH 1 501 501 HOH HOH A . G 4 HOH 2 502 502 HOH HOH A . G 4 HOH 3 504 504 HOH HOH A . G 4 HOH 4 506 506 HOH HOH A . G 4 HOH 5 507 507 HOH HOH A . G 4 HOH 6 508 508 HOH HOH A . G 4 HOH 7 509 509 HOH HOH A . G 4 HOH 8 511 511 HOH HOH A . G 4 HOH 9 512 512 HOH HOH A . G 4 HOH 10 513 513 HOH HOH A . G 4 HOH 11 515 515 HOH HOH A . G 4 HOH 12 517 517 HOH HOH A . G 4 HOH 13 518 518 HOH HOH A . G 4 HOH 14 519 519 HOH HOH A . G 4 HOH 15 522 522 HOH HOH A . G 4 HOH 16 523 523 HOH HOH A . G 4 HOH 17 524 524 HOH HOH A . G 4 HOH 18 525 525 HOH HOH A . G 4 HOH 19 526 526 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id UD5 _pdbx_struct_mod_residue.label_seq_id 10 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id UD5 _pdbx_struct_mod_residue.auth_seq_id 410 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id U _pdbx_struct_mod_residue.details 5-FLUOROURIDINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-08-09 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O6 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 G _pdbx_validate_symm_contact.auth_seq_id_1 401 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O6 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 G _pdbx_validate_symm_contact.auth_seq_id_2 401 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_556 _pdbx_validate_symm_contact.dist 1.57 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" B U 414 ? ? "C3'" B U 414 ? ? "O3'" B U 414 ? ? 125.16 113.00 12.16 2.00 N 2 1 "C4'" B U 414 ? ? "C3'" B U 414 ? ? "C2'" B U 414 ? ? 108.75 102.60 6.15 1.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 44 ? ? -99.14 37.50 2 1 ASP A 92 ? ? -77.27 31.15 3 1 THR A 102 ? ? -140.22 25.07 4 1 ARG A 162 ? ? -175.31 -177.62 5 1 HIS A 163 ? ? -160.70 96.90 6 1 ALA A 195 ? ? -177.95 133.77 7 1 SER A 206 ? ? 62.00 -149.76 8 1 LYS A 207 ? ? -92.86 39.17 9 1 ASP A 250 ? ? -69.31 3.76 10 1 LEU A 258 ? ? -37.24 -31.07 11 1 SER A 273 ? ? -70.52 -88.49 12 1 PRO A 276 ? ? -47.77 152.49 13 1 GLU A 287 ? ? -44.98 -91.07 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id U _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 409 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.059 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 9 ? CG ? B MET 22 CG 2 1 Y 1 A MET 9 ? SD ? B MET 22 SD 3 1 Y 1 A MET 9 ? CE ? B MET 22 CE 4 1 Y 1 A ASP 10 ? CG ? B ASP 23 CG 5 1 Y 1 A ASP 10 ? OD1 ? B ASP 23 OD1 6 1 Y 1 A ASP 10 ? OD2 ? B ASP 23 OD2 7 1 Y 1 A ASN 39 ? CG ? B ASN 52 CG 8 1 Y 1 A ASN 39 ? OD1 ? B ASN 52 OD1 9 1 Y 1 A ASN 39 ? ND2 ? B ASN 52 ND2 10 1 Y 1 A GLN 132 ? CG ? B GLN 145 CG 11 1 Y 1 A GLN 132 ? CD ? B GLN 145 CD 12 1 Y 1 A GLN 132 ? OE1 ? B GLN 145 OE1 13 1 Y 1 A GLN 132 ? NE2 ? B GLN 145 NE2 14 1 Y 1 A GLU 149 ? CG ? B GLU 162 CG 15 1 Y 1 A GLU 149 ? CD ? B GLU 162 CD 16 1 Y 1 A GLU 149 ? OE1 ? B GLU 162 OE1 17 1 Y 1 A GLU 149 ? OE2 ? B GLU 162 OE2 18 1 Y 1 A LYS 207 ? CG ? B LYS 220 CG 19 1 Y 1 A LYS 207 ? CD ? B LYS 220 CD 20 1 Y 1 A LYS 207 ? CE ? B LYS 220 CE 21 1 Y 1 A LYS 207 ? NZ ? B LYS 220 NZ 22 1 Y 1 A ARG 271 ? CG ? B ARG 284 CG 23 1 Y 1 A ARG 271 ? CD ? B ARG 284 CD 24 1 Y 1 A ARG 271 ? NE ? B ARG 284 NE 25 1 Y 1 A ARG 271 ? CZ ? B ARG 284 CZ 26 1 Y 1 A ARG 271 ? NH1 ? B ARG 284 NH1 27 1 Y 1 A ARG 271 ? NH2 ? B ARG 284 NH2 28 1 Y 1 A LEU 277 ? CG ? B LEU 290 CG 29 1 Y 1 A LEU 277 ? CD1 ? B LEU 290 CD1 30 1 Y 1 A LEU 277 ? CD2 ? B LEU 290 CD2 31 1 Y 1 A GLU 278 ? CG ? B GLU 291 CG 32 1 Y 1 A GLU 278 ? CD ? B GLU 291 CD 33 1 Y 1 A GLU 278 ? OE1 ? B GLU 291 OE1 34 1 Y 1 A GLU 278 ? OE2 ? B GLU 291 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -12 ? B MET 1 2 1 Y 1 A GLY -11 ? B GLY 2 3 1 Y 1 A HIS -10 ? B HIS 3 4 1 Y 1 A HIS -9 ? B HIS 4 5 1 Y 1 A HIS -8 ? B HIS 5 6 1 Y 1 A HIS -7 ? B HIS 6 7 1 Y 1 A HIS -6 ? B HIS 7 8 1 Y 1 A HIS -5 ? B HIS 8 9 1 Y 1 A HIS -4 ? B HIS 9 10 1 Y 1 A HIS -3 ? B HIS 10 11 1 Y 1 A HIS -2 ? B HIS 11 12 1 Y 1 A HIS -1 ? B HIS 12 13 1 Y 1 A SER 0 ? B SER 13 14 1 Y 1 A SER 1 ? B SER 14 15 1 Y 1 A GLY 2 ? B GLY 15 16 1 Y 1 A HIS 3 ? B HIS 16 17 1 Y 1 A ILE 4 ? B ILE 17 18 1 Y 1 A GLU 5 ? B GLU 18 19 1 Y 1 A GLY 6 ? B GLY 19 20 1 Y 1 A ARG 7 ? B ARG 20 21 1 Y 1 A HIS 8 ? B HIS 21 22 1 Y 1 A GLU 311 ? B GLU 324 23 1 Y 1 A TYR 312 ? B TYR 325 24 1 Y 1 A PRO 313 ? B PRO 326 25 1 Y 1 A ALA 314 ? B ALA 327 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 HOH O O N N 268 HOH H1 H N N 269 HOH H2 H N N 270 ILE N N N N 271 ILE CA C N S 272 ILE C C N N 273 ILE O O N N 274 ILE CB C N S 275 ILE CG1 C N N 276 ILE CG2 C N N 277 ILE CD1 C N N 278 ILE OXT O N N 279 ILE H H N N 280 ILE H2 H N N 281 ILE HA H N N 282 ILE HB H N N 283 ILE HG12 H N N 284 ILE HG13 H N N 285 ILE HG21 H N N 286 ILE HG22 H N N 287 ILE HG23 H N N 288 ILE HD11 H N N 289 ILE HD12 H N N 290 ILE HD13 H N N 291 ILE HXT H N N 292 LEU N N N N 293 LEU CA C N S 294 LEU C C N N 295 LEU O O N N 296 LEU CB C N N 297 LEU CG C N N 298 LEU CD1 C N N 299 LEU CD2 C N N 300 LEU OXT O N N 301 LEU H H N N 302 LEU H2 H N N 303 LEU HA H N N 304 LEU HB2 H N N 305 LEU HB3 H N N 306 LEU HG H N N 307 LEU HD11 H N N 308 LEU HD12 H N N 309 LEU HD13 H N N 310 LEU HD21 H N N 311 LEU HD22 H N N 312 LEU HD23 H N N 313 LEU HXT H N N 314 LYS N N N N 315 LYS CA C N S 316 LYS C C N N 317 LYS O O N N 318 LYS CB C N N 319 LYS CG C N N 320 LYS CD C N N 321 LYS CE C N N 322 LYS NZ N N N 323 LYS OXT O N N 324 LYS H H N N 325 LYS H2 H N N 326 LYS HA H N N 327 LYS HB2 H N N 328 LYS HB3 H N N 329 LYS HG2 H N N 330 LYS HG3 H N N 331 LYS HD2 H N N 332 LYS HD3 H N N 333 LYS HE2 H N N 334 LYS HE3 H N N 335 LYS HZ1 H N N 336 LYS HZ2 H N N 337 LYS HZ3 H N N 338 LYS HXT H N N 339 MET N N N N 340 MET CA C N S 341 MET C C N N 342 MET O O N N 343 MET CB C N N 344 MET CG C N N 345 MET SD S N N 346 MET CE C N N 347 MET OXT O N N 348 MET H H N N 349 MET H2 H N N 350 MET HA H N N 351 MET HB2 H N N 352 MET HB3 H N N 353 MET HG2 H N N 354 MET HG3 H N N 355 MET HE1 H N N 356 MET HE2 H N N 357 MET HE3 H N N 358 MET HXT H N N 359 PHE N N N N 360 PHE CA C N S 361 PHE C C N N 362 PHE O O N N 363 PHE CB C N N 364 PHE CG C Y N 365 PHE CD1 C Y N 366 PHE CD2 C Y N 367 PHE CE1 C Y N 368 PHE CE2 C Y N 369 PHE CZ C Y N 370 PHE OXT O N N 371 PHE H H N N 372 PHE H2 H N N 373 PHE HA H N N 374 PHE HB2 H N N 375 PHE HB3 H N N 376 PHE HD1 H N N 377 PHE HD2 H N N 378 PHE HE1 H N N 379 PHE HE2 H N N 380 PHE HZ H N N 381 PHE HXT H N N 382 PRO N N N N 383 PRO CA C N S 384 PRO C C N N 385 PRO O O N N 386 PRO CB C N N 387 PRO CG C N N 388 PRO CD C N N 389 PRO OXT O N N 390 PRO H H N N 391 PRO HA H N N 392 PRO HB2 H N N 393 PRO HB3 H N N 394 PRO HG2 H N N 395 PRO HG3 H N N 396 PRO HD2 H N N 397 PRO HD3 H N N 398 PRO HXT H N N 399 SER N N N N 400 SER CA C N S 401 SER C C N N 402 SER O O N N 403 SER CB C N N 404 SER OG O N N 405 SER OXT O N N 406 SER H H N N 407 SER H2 H N N 408 SER HA H N N 409 SER HB2 H N N 410 SER HB3 H N N 411 SER HG H N N 412 SER HXT H N N 413 SO4 S S N N 414 SO4 O1 O N N 415 SO4 O2 O N N 416 SO4 O3 O N N 417 SO4 O4 O N N 418 THR N N N N 419 THR CA C N S 420 THR C C N N 421 THR O O N N 422 THR CB C N R 423 THR OG1 O N N 424 THR CG2 C N N 425 THR OXT O N N 426 THR H H N N 427 THR H2 H N N 428 THR HA H N N 429 THR HB H N N 430 THR HG1 H N N 431 THR HG21 H N N 432 THR HG22 H N N 433 THR HG23 H N N 434 THR HXT H N N 435 TYR N N N N 436 TYR CA C N S 437 TYR C C N N 438 TYR O O N N 439 TYR CB C N N 440 TYR CG C Y N 441 TYR CD1 C Y N 442 TYR CD2 C Y N 443 TYR CE1 C Y N 444 TYR CE2 C Y N 445 TYR CZ C Y N 446 TYR OH O N N 447 TYR OXT O N N 448 TYR H H N N 449 TYR H2 H N N 450 TYR HA H N N 451 TYR HB2 H N N 452 TYR HB3 H N N 453 TYR HD1 H N N 454 TYR HD2 H N N 455 TYR HE1 H N N 456 TYR HE2 H N N 457 TYR HH H N N 458 TYR HXT H N N 459 U OP3 O N N 460 U P P N N 461 U OP1 O N N 462 U OP2 O N N 463 U "O5'" O N N 464 U "C5'" C N N 465 U "C4'" C N R 466 U "O4'" O N N 467 U "C3'" C N S 468 U "O3'" O N N 469 U "C2'" C N R 470 U "O2'" O N N 471 U "C1'" C N R 472 U N1 N N N 473 U C2 C N N 474 U O2 O N N 475 U N3 N N N 476 U C4 C N N 477 U O4 O N N 478 U C5 C N N 479 U C6 C N N 480 U HOP3 H N N 481 U HOP2 H N N 482 U "H5'" H N N 483 U "H5''" H N N 484 U "H4'" H N N 485 U "H3'" H N N 486 U "HO3'" H N N 487 U "H2'" H N N 488 U "HO2'" H N N 489 U "H1'" H N N 490 U H3 H N N 491 U H5 H N N 492 U H6 H N N 493 UD5 P P N N 494 UD5 OP1 O N N 495 UD5 OP2 O N N 496 UD5 "O5'" O N N 497 UD5 "C5'" C N N 498 UD5 "C4'" C N R 499 UD5 "O4'" O N N 500 UD5 "C3'" C N S 501 UD5 "O3'" O N N 502 UD5 "C2'" C N R 503 UD5 "O2'" O N N 504 UD5 "C1'" C N R 505 UD5 N1 N N N 506 UD5 C2 C N N 507 UD5 O2 O N N 508 UD5 N3 N N N 509 UD5 C4 C N N 510 UD5 O4 O N N 511 UD5 C5 C N N 512 UD5 C6 C N N 513 UD5 F F N N 514 UD5 H1P H N N 515 UD5 H2P H N N 516 UD5 "H5'" H N N 517 UD5 "H5''" H N N 518 UD5 "H4'" H N N 519 UD5 "H3'" H N N 520 UD5 H2 H N N 521 UD5 "H2'" H N N 522 UD5 H1 H N N 523 UD5 "H1'" H N N 524 UD5 HN3 H N N 525 UD5 H6 H N N 526 VAL N N N N 527 VAL CA C N S 528 VAL C C N N 529 VAL O O N N 530 VAL CB C N N 531 VAL CG1 C N N 532 VAL CG2 C N N 533 VAL OXT O N N 534 VAL H H N N 535 VAL H2 H N N 536 VAL HA H N N 537 VAL HB H N N 538 VAL HG11 H N N 539 VAL HG12 H N N 540 VAL HG13 H N N 541 VAL HG21 H N N 542 VAL HG22 H N N 543 VAL HG23 H N N 544 VAL HXT H N N 545 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PHE N CA sing N N 352 PHE N H sing N N 353 PHE N H2 sing N N 354 PHE CA C sing N N 355 PHE CA CB sing N N 356 PHE CA HA sing N N 357 PHE C O doub N N 358 PHE C OXT sing N N 359 PHE CB CG sing N N 360 PHE CB HB2 sing N N 361 PHE CB HB3 sing N N 362 PHE CG CD1 doub Y N 363 PHE CG CD2 sing Y N 364 PHE CD1 CE1 sing Y N 365 PHE CD1 HD1 sing N N 366 PHE CD2 CE2 doub Y N 367 PHE CD2 HD2 sing N N 368 PHE CE1 CZ doub Y N 369 PHE CE1 HE1 sing N N 370 PHE CE2 CZ sing Y N 371 PHE CE2 HE2 sing N N 372 PHE CZ HZ sing N N 373 PHE OXT HXT sing N N 374 PRO N CA sing N N 375 PRO N CD sing N N 376 PRO N H sing N N 377 PRO CA C sing N N 378 PRO CA CB sing N N 379 PRO CA HA sing N N 380 PRO C O doub N N 381 PRO C OXT sing N N 382 PRO CB CG sing N N 383 PRO CB HB2 sing N N 384 PRO CB HB3 sing N N 385 PRO CG CD sing N N 386 PRO CG HG2 sing N N 387 PRO CG HG3 sing N N 388 PRO CD HD2 sing N N 389 PRO CD HD3 sing N N 390 PRO OXT HXT sing N N 391 SER N CA sing N N 392 SER N H sing N N 393 SER N H2 sing N N 394 SER CA C sing N N 395 SER CA CB sing N N 396 SER CA HA sing N N 397 SER C O doub N N 398 SER C OXT sing N N 399 SER CB OG sing N N 400 SER CB HB2 sing N N 401 SER CB HB3 sing N N 402 SER OG HG sing N N 403 SER OXT HXT sing N N 404 SO4 S O1 doub N N 405 SO4 S O2 doub N N 406 SO4 S O3 sing N N 407 SO4 S O4 sing N N 408 THR N CA sing N N 409 THR N H sing N N 410 THR N H2 sing N N 411 THR CA C sing N N 412 THR CA CB sing N N 413 THR CA HA sing N N 414 THR C O doub N N 415 THR C OXT sing N N 416 THR CB OG1 sing N N 417 THR CB CG2 sing N N 418 THR CB HB sing N N 419 THR OG1 HG1 sing N N 420 THR CG2 HG21 sing N N 421 THR CG2 HG22 sing N N 422 THR CG2 HG23 sing N N 423 THR OXT HXT sing N N 424 TYR N CA sing N N 425 TYR N H sing N N 426 TYR N H2 sing N N 427 TYR CA C sing N N 428 TYR CA CB sing N N 429 TYR CA HA sing N N 430 TYR C O doub N N 431 TYR C OXT sing N N 432 TYR CB CG sing N N 433 TYR CB HB2 sing N N 434 TYR CB HB3 sing N N 435 TYR CG CD1 doub Y N 436 TYR CG CD2 sing Y N 437 TYR CD1 CE1 sing Y N 438 TYR CD1 HD1 sing N N 439 TYR CD2 CE2 doub Y N 440 TYR CD2 HD2 sing N N 441 TYR CE1 CZ doub Y N 442 TYR CE1 HE1 sing N N 443 TYR CE2 CZ sing Y N 444 TYR CE2 HE2 sing N N 445 TYR CZ OH sing N N 446 TYR OH HH sing N N 447 TYR OXT HXT sing N N 448 U OP3 P sing N N 449 U OP3 HOP3 sing N N 450 U P OP1 doub N N 451 U P OP2 sing N N 452 U P "O5'" sing N N 453 U OP2 HOP2 sing N N 454 U "O5'" "C5'" sing N N 455 U "C5'" "C4'" sing N N 456 U "C5'" "H5'" sing N N 457 U "C5'" "H5''" sing N N 458 U "C4'" "O4'" sing N N 459 U "C4'" "C3'" sing N N 460 U "C4'" "H4'" sing N N 461 U "O4'" "C1'" sing N N 462 U "C3'" "O3'" sing N N 463 U "C3'" "C2'" sing N N 464 U "C3'" "H3'" sing N N 465 U "O3'" "HO3'" sing N N 466 U "C2'" "O2'" sing N N 467 U "C2'" "C1'" sing N N 468 U "C2'" "H2'" sing N N 469 U "O2'" "HO2'" sing N N 470 U "C1'" N1 sing N N 471 U "C1'" "H1'" sing N N 472 U N1 C2 sing N N 473 U N1 C6 sing N N 474 U C2 O2 doub N N 475 U C2 N3 sing N N 476 U N3 C4 sing N N 477 U N3 H3 sing N N 478 U C4 O4 doub N N 479 U C4 C5 sing N N 480 U C5 C6 doub N N 481 U C5 H5 sing N N 482 U C6 H6 sing N N 483 UD5 P OP1 sing N N 484 UD5 P OP2 sing N N 485 UD5 P "O5'" sing N N 486 UD5 OP1 H1P sing N N 487 UD5 OP2 H2P sing N N 488 UD5 "O5'" "C5'" sing N N 489 UD5 "C5'" "C4'" sing N N 490 UD5 "C5'" "H5'" sing N N 491 UD5 "C5'" "H5''" sing N N 492 UD5 "C4'" "O4'" sing N N 493 UD5 "C4'" "C3'" sing N N 494 UD5 "C4'" "H4'" sing N N 495 UD5 "O4'" "C1'" sing N N 496 UD5 "C3'" "O3'" sing N N 497 UD5 "C3'" "C2'" sing N N 498 UD5 "C3'" "H3'" sing N N 499 UD5 "O3'" H2 sing N N 500 UD5 "C2'" "O2'" sing N N 501 UD5 "C2'" "C1'" sing N N 502 UD5 "C2'" "H2'" sing N N 503 UD5 "O2'" H1 sing N N 504 UD5 "C1'" N1 sing N N 505 UD5 "C1'" "H1'" sing N N 506 UD5 N1 C2 sing N N 507 UD5 N1 C6 sing N N 508 UD5 C2 O2 doub N N 509 UD5 C2 N3 sing N N 510 UD5 N3 C4 sing N N 511 UD5 N3 HN3 sing N N 512 UD5 C4 O4 doub N N 513 UD5 C4 C5 sing N N 514 UD5 C5 C6 doub N N 515 UD5 C5 F sing N N 516 UD5 C6 H6 sing N N 517 VAL N CA sing N N 518 VAL N H sing N N 519 VAL N H2 sing N N 520 VAL CA C sing N N 521 VAL CA CB sing N N 522 VAL CA HA sing N N 523 VAL C O doub N N 524 VAL C OXT sing N N 525 VAL CB CG1 sing N N 526 VAL CB CG2 sing N N 527 VAL CB HB sing N N 528 VAL CG1 HG11 sing N N 529 VAL CG1 HG12 sing N N 530 VAL CG1 HG13 sing N N 531 VAL CG2 HG21 sing N N 532 VAL CG2 HG22 sing N N 533 VAL CG2 HG23 sing N N 534 VAL OXT HXT sing N N 535 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1ZL3 'a-form double helix' 1ZL3 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 22 1_555 -0.166 -0.053 0.587 3.502 -12.803 2.234 1 B_G402:C422_B B 402 ? B 422 ? 19 1 1 A C 3 1_555 A G 21 1_555 0.093 -0.170 0.027 1.414 -12.183 0.287 2 B_C403:G421_B B 403 ? B 421 ? 19 1 1 A A 4 1_555 A U 20 1_555 -0.401 0.152 0.079 -9.472 -2.694 5.708 3 B_A404:U420_B B 404 ? B 420 ? 20 1 1 A A 5 1_555 A U 19 1_555 0.005 -0.232 -0.092 -4.806 -12.262 -1.506 4 B_A405:U419_B B 405 ? B 419 ? 20 1 1 A C 6 1_555 A G 18 1_555 0.238 -0.144 0.011 -3.640 -8.457 2.464 5 B_C406:G418_B B 406 ? B 418 ? 19 1 1 A G 7 1_555 A C 17 1_555 -0.196 -0.423 -0.438 -11.185 -12.400 -9.065 6 B_G407:C417_B B 407 ? B 417 ? 19 1 1 A G 8 1_555 A C 16 1_555 -0.465 -0.245 -0.030 -7.616 -5.051 0.760 7 B_G408:C416_B B 408 ? B 416 ? 19 1 1 A U 9 1_555 A A 13 1_555 4.650 -2.755 0.134 21.100 15.796 -88.647 8 B_U409:A413_B B 409 ? B 413 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 22 1_555 A C 3 1_555 A G 21 1_555 -0.381 -1.737 3.220 1.253 5.673 33.603 -3.810 0.838 2.881 9.722 -2.148 34.087 1 BB_G402C403:G421C422_BB B 402 ? B 422 ? B 403 ? B 421 ? 1 A C 3 1_555 A G 21 1_555 A A 4 1_555 A U 20 1_555 0.402 -1.902 3.292 -3.494 13.788 29.999 -5.379 -1.223 2.174 24.949 6.323 33.130 2 BB_C403A404:U420G421_BB B 403 ? B 421 ? B 404 ? B 420 ? 1 A A 4 1_555 A U 20 1_555 A A 5 1_555 A U 19 1_555 -0.844 -1.363 3.120 2.314 3.870 34.881 -2.789 1.716 2.896 6.423 -3.840 35.162 3 BB_A404A405:U419U420_BB B 404 ? B 420 ? B 405 ? B 419 ? 1 A A 5 1_555 A U 19 1_555 A C 6 1_555 A G 18 1_555 1.076 -1.342 3.269 2.187 3.379 33.310 -2.874 -1.509 3.184 5.869 -3.798 33.545 4 BB_A405C406:G418U419_BB B 405 ? B 419 ? B 406 ? B 418 ? 1 A C 6 1_555 A G 18 1_555 A G 7 1_555 A C 17 1_555 0.081 -1.877 3.470 5.515 10.081 28.073 -5.564 0.924 2.624 19.766 -10.814 30.290 5 BB_C406G407:C417G418_BB B 406 ? B 418 ? B 407 ? B 417 ? 1 A G 7 1_555 A C 17 1_555 A G 8 1_555 A C 16 1_555 0.870 -2.107 3.033 2.108 4.618 31.377 -4.602 -1.246 2.754 8.469 -3.867 31.775 6 BB_G407G408:C416C417_BB B 407 ? B 417 ? B 408 ? B 416 ? 1 A G 8 1_555 A C 16 1_555 A U 9 1_555 A A 13 1_555 -2.159 -0.992 2.937 4.050 2.391 77.744 -0.848 1.818 2.813 1.903 -3.224 77.863 7 BB_G408U409:A413C416_BB B 408 ? B 416 ? B 409 ? B 413 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1K8W _pdbx_initial_refinement_model.details 'PDB ENTRY 1K8W' #