data_1ZT5 # _entry.id 1ZT5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1ZT5 RCSB RCSB033088 WWPDB D_1000033088 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1ZT3 _pdbx_database_related.details 'C-terminal domain of the same protein isolated from human amniotic fluid' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZT5 _pdbx_database_status.recvd_initial_deposition_date 2005-05-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sala, A.' 1 'Capaldi, S.' 2 'Campagnoli, M.' 3 'Faggion, B.' 4 'Labo, S.' 5 'Perduca, M.' 6 'Romano, A.' 7 'Carrizo, M.E.' 8 'Valli, M.' 9 'Visai, L.' 10 'Minchiotti, L.' 11 'Galliano, M.' 12 'Monaco, H.L.' 13 # _citation.id primary _citation.title ;Structure and Properties of the C-terminal Domain of Insulin-like Growth Factor-binding Protein-1 Isolated from Human Amniotic Fluid ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 29812 _citation.page_last 29819 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15972819 _citation.pdbx_database_id_DOI 10.1074/jbc.M504304200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Sala, A.' 1 primary 'Capaldi, S.' 2 primary 'Campagnoli, M.' 3 primary 'Faggion, B.' 4 primary 'Labo, S.' 5 primary 'Perduca, M.' 6 primary 'Romano, A.' 7 primary 'Carrizo, M.E.' 8 primary 'Valli, M.' 9 primary 'Visai, L.' 10 primary 'Minchiotti, L.' 11 primary 'Galliano, M.' 12 primary 'Monaco, H.L.' 13 # _cell.entry_id 1ZT5 _cell.length_a 38.210 _cell.length_b 59.600 _cell.length_c 31.060 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZT5 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Insulin-like growth factor binding protein 1' 9185.340 1 ? ? 'C-terminal domain' ? 2 non-polymer syn 'FE (II) ION' 55.845 1 ? ? ? ? 3 non-polymer syn '1,4-DIETHYLENE DIOXIDE' 88.105 1 ? ? ? ? 4 water nat water 18.015 61 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'IGFBP-1, IBP- 1, IGF-binding protein 1, Placental protein 12, PP12' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code WKEPCRIELYRVVESLAKAQETSGEEISKFYLPNCNKNGFYHSRQCETSMDGEAGLCWCVYPWNGKRIPGSPEIRGDPNC _entity_poly.pdbx_seq_one_letter_code_can WKEPCRIELYRVVESLAKAQETSGEEISKFYLPNCNKNGFYHSRQCETSMDGEAGLCWCVYPWNGKRIPGSPEIRGDPNC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TRP n 1 2 LYS n 1 3 GLU n 1 4 PRO n 1 5 CYS n 1 6 ARG n 1 7 ILE n 1 8 GLU n 1 9 LEU n 1 10 TYR n 1 11 ARG n 1 12 VAL n 1 13 VAL n 1 14 GLU n 1 15 SER n 1 16 LEU n 1 17 ALA n 1 18 LYS n 1 19 ALA n 1 20 GLN n 1 21 GLU n 1 22 THR n 1 23 SER n 1 24 GLY n 1 25 GLU n 1 26 GLU n 1 27 ILE n 1 28 SER n 1 29 LYS n 1 30 PHE n 1 31 TYR n 1 32 LEU n 1 33 PRO n 1 34 ASN n 1 35 CYS n 1 36 ASN n 1 37 LYS n 1 38 ASN n 1 39 GLY n 1 40 PHE n 1 41 TYR n 1 42 HIS n 1 43 SER n 1 44 ARG n 1 45 GLN n 1 46 CYS n 1 47 GLU n 1 48 THR n 1 49 SER n 1 50 MET n 1 51 ASP n 1 52 GLY n 1 53 GLU n 1 54 ALA n 1 55 GLY n 1 56 LEU n 1 57 CYS n 1 58 TRP n 1 59 CYS n 1 60 VAL n 1 61 TYR n 1 62 PRO n 1 63 TRP n 1 64 ASN n 1 65 GLY n 1 66 LYS n 1 67 ARG n 1 68 ILE n 1 69 PRO n 1 70 GLY n 1 71 SER n 1 72 PRO n 1 73 GLU n 1 74 ILE n 1 75 ARG n 1 76 GLY n 1 77 ASP n 1 78 PRO n 1 79 ASN n 1 80 CYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus Homo _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'Amniotic fluid' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code IBP1_HUMAN _struct_ref.pdbx_db_accession P08833 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;WKEPCRIELYRVVESLAKAQETSGEEISKFYLPNCNKNGFYHSRQCETSMDGEAGLCWCVYPWNGKRIPGSPEIRGDPNC ; _struct_ref.pdbx_align_begin 172 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ZT5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 80 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P08833 _struct_ref_seq.db_align_beg 172 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 251 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 172 _struct_ref_seq.pdbx_auth_seq_align_end 251 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DIO non-polymer . '1,4-DIETHYLENE DIOXIDE' ? 'C4 H8 O2' 88.105 FE2 non-polymer . 'FE (II) ION' ? 'Fe 2' 55.845 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ZT5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.9 _exptl_crystal.density_percent_sol 35.7 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'dioxane, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-01-14 _diffrn_detector.details 'Double Crystal (Si111, Si220) or White Beam' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Three-segment Pt-coated toroidal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 1ZT5 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.818 _reflns.d_resolution_low 22.34 _reflns.number_all 6773 _reflns.number_obs 6773 _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.044 _reflns.pdbx_netI_over_sigmaI 8.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.48 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.818 _reflns_shell.d_res_low 1.88 _reflns_shell.percent_possible_all 98.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.085 _reflns_shell.meanI_over_sigI_obs 5.6 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ZT5 _refine.ls_number_reflns_obs 6267 _refine.ls_number_reflns_all 6577 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.34 _refine.ls_d_res_high 1.818 _refine.ls_percent_reflns_obs 97.15 _refine.ls_R_factor_obs 0.22333 _refine.ls_R_factor_all 0.232 _refine.ls_R_factor_R_work 0.22153 _refine.ls_R_factor_R_free 0.26425 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 310 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.926 _refine.correlation_coeff_Fo_to_Fc_free 0.906 _refine.B_iso_mean 24.253 _refine.aniso_B[1][1] 1.28 _refine.aniso_B[2][2] -0.68 _refine.aniso_B[3][3] -0.60 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.188 _refine.pdbx_overall_ESU_R_Free 0.166 _refine.overall_SU_ML 0.101 _refine.overall_SU_B 3.231 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 642 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 61 _refine_hist.number_atoms_total 710 _refine_hist.d_res_high 1.818 _refine_hist.d_res_low 22.34 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 669 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.421 1.958 ? 905 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.472 5.000 ? 79 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 26.466 23.939 ? 33 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.755 15.000 ? 110 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.326 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.079 0.200 ? 86 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 529 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.203 0.200 ? 285 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.310 0.200 ? 457 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.133 0.200 ? 71 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.186 0.200 ? 64 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.166 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.779 1.500 ? 412 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.252 2.000 ? 642 'X-RAY DIFFRACTION' ? r_scbond_it 1.750 3.000 ? 305 'X-RAY DIFFRACTION' ? r_scangle_it 2.729 4.500 ? 263 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.818 _refine_ls_shell.d_res_low 1.865 _refine_ls_shell.number_reflns_R_work 439 _refine_ls_shell.R_factor_R_work 0.229 _refine_ls_shell.percent_reflns_obs 97.67 _refine_ls_shell.R_factor_R_free 0.384 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1ZT5 _struct.title 'C-terminal domain of Insulin-like Growth Factor Binding Protein-1 isolated from human amniotic fluid complexed with Iron(II)' _struct.pdbx_descriptor 'Insulin-like growth factor binding protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZT5 _struct_keywords.pdbx_keywords 'PEPTIDE BINDING PROTEIN' _struct_keywords.text ;Insulin-like Growth Factor Binding Protein-1, IGFBP-1, amniotic fluid, C-terminal domain, metal-binding, iron, PEPTIDE BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 3 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 23 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 174 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 194 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 35 SG ? ? A CYS 176 A CYS 206 1_555 ? ? ? ? ? ? ? 2.047 ? disulf2 disulf ? ? A CYS 46 SG ? ? ? 1_555 A CYS 57 SG ? ? A CYS 217 A CYS 228 1_555 ? ? ? ? ? ? ? 2.027 ? disulf3 disulf ? ? A CYS 59 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 230 A CYS 251 1_555 ? ? ? ? ? ? ? 2.019 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 29 ? PHE A 30 ? LYS A 200 PHE A 201 A 2 THR A 48 ? SER A 49 ? THR A 219 SER A 220 B 1 ARG A 44 ? CYS A 46 ? ARG A 215 CYS A 217 B 2 CYS A 57 ? CYS A 59 ? CYS A 228 CYS A 230 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 30 ? N PHE A 201 O THR A 48 ? O THR A 219 B 1 2 N GLN A 45 ? N GLN A 216 O TRP A 58 ? O TRP A 229 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE FE2 A 300' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE DIO A 400' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 HIS A 42 ? HIS A 213 . ? 1_555 ? 2 AC2 2 LEU A 9 ? LEU A 180 . ? 1_555 ? 3 AC2 2 TYR A 10 ? TYR A 181 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ZT5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ZT5 _atom_sites.fract_transf_matrix[1][1] 0.026171 _atom_sites.fract_transf_matrix[1][2] -0.000000 _atom_sites.fract_transf_matrix[1][3] -0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016779 _atom_sites.fract_transf_matrix[2][3] -0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032196 _atom_sites.fract_transf_vector[1] -0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] -0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TRP 1 172 172 TRP TRP A . n A 1 2 LYS 2 173 173 LYS LYS A . n A 1 3 GLU 3 174 174 GLU GLU A . n A 1 4 PRO 4 175 175 PRO PRO A . n A 1 5 CYS 5 176 176 CYS CYS A . n A 1 6 ARG 6 177 177 ARG ARG A . n A 1 7 ILE 7 178 178 ILE ILE A . n A 1 8 GLU 8 179 179 GLU GLU A . n A 1 9 LEU 9 180 180 LEU LEU A . n A 1 10 TYR 10 181 181 TYR TYR A . n A 1 11 ARG 11 182 182 ARG ARG A . n A 1 12 VAL 12 183 183 VAL VAL A . n A 1 13 VAL 13 184 184 VAL VAL A . n A 1 14 GLU 14 185 185 GLU GLU A . n A 1 15 SER 15 186 186 SER SER A . n A 1 16 LEU 16 187 187 LEU LEU A . n A 1 17 ALA 17 188 188 ALA ALA A . n A 1 18 LYS 18 189 189 LYS LYS A . n A 1 19 ALA 19 190 190 ALA ALA A . n A 1 20 GLN 20 191 191 GLN GLN A . n A 1 21 GLU 21 192 192 GLU GLU A . n A 1 22 THR 22 193 193 THR THR A . n A 1 23 SER 23 194 194 SER SER A . n A 1 24 GLY 24 195 195 GLY GLY A . n A 1 25 GLU 25 196 196 GLU GLU A . n A 1 26 GLU 26 197 197 GLU GLU A . n A 1 27 ILE 27 198 198 ILE ILE A . n A 1 28 SER 28 199 199 SER SER A . n A 1 29 LYS 29 200 200 LYS LYS A . n A 1 30 PHE 30 201 201 PHE PHE A . n A 1 31 TYR 31 202 202 TYR TYR A . n A 1 32 LEU 32 203 203 LEU LEU A . n A 1 33 PRO 33 204 204 PRO PRO A . n A 1 34 ASN 34 205 205 ASN ASN A . n A 1 35 CYS 35 206 206 CYS CYS A . n A 1 36 ASN 36 207 207 ASN ASN A . n A 1 37 LYS 37 208 208 LYS LYS A . n A 1 38 ASN 38 209 209 ASN ASN A . n A 1 39 GLY 39 210 210 GLY GLY A . n A 1 40 PHE 40 211 211 PHE PHE A . n A 1 41 TYR 41 212 212 TYR TYR A . n A 1 42 HIS 42 213 213 HIS HIS A . n A 1 43 SER 43 214 214 SER SER A . n A 1 44 ARG 44 215 215 ARG ARG A . n A 1 45 GLN 45 216 216 GLN GLN A . n A 1 46 CYS 46 217 217 CYS CYS A . n A 1 47 GLU 47 218 218 GLU GLU A . n A 1 48 THR 48 219 219 THR THR A . n A 1 49 SER 49 220 220 SER SER A . n A 1 50 MET 50 221 221 MET MET A . n A 1 51 ASP 51 222 222 ASP ASP A . n A 1 52 GLY 52 223 223 GLY GLY A . n A 1 53 GLU 53 224 224 GLU GLU A . n A 1 54 ALA 54 225 225 ALA ALA A . n A 1 55 GLY 55 226 226 GLY GLY A . n A 1 56 LEU 56 227 227 LEU LEU A . n A 1 57 CYS 57 228 228 CYS CYS A . n A 1 58 TRP 58 229 229 TRP TRP A . n A 1 59 CYS 59 230 230 CYS CYS A . n A 1 60 VAL 60 231 231 VAL VAL A . n A 1 61 TYR 61 232 232 TYR TYR A . n A 1 62 PRO 62 233 233 PRO PRO A . n A 1 63 TRP 63 234 234 TRP TRP A . n A 1 64 ASN 64 235 235 ASN ASN A . n A 1 65 GLY 65 236 236 GLY GLY A . n A 1 66 LYS 66 237 237 LYS LYS A . n A 1 67 ARG 67 238 238 ARG ARG A . n A 1 68 ILE 68 239 239 ILE ILE A . n A 1 69 PRO 69 240 240 PRO PRO A . n A 1 70 GLY 70 241 241 GLY GLY A . n A 1 71 SER 71 242 242 SER SER A . n A 1 72 PRO 72 243 243 PRO PRO A . n A 1 73 GLU 73 244 244 GLU GLU A . n A 1 74 ILE 74 245 245 ILE ILE A . n A 1 75 ARG 75 246 246 ARG ARG A . n A 1 76 GLY 76 247 247 GLY GLY A . n A 1 77 ASP 77 248 248 ASP ASP A . n A 1 78 PRO 78 249 249 PRO PRO A . n A 1 79 ASN 79 250 250 ASN ASN A . n A 1 80 CYS 80 251 251 CYS CYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-06-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 MOSFLM 'data reduction' . ? 2 CCP4 'data scaling' '(SCALA)' ? 3 XFIT 'data reduction' . ? 4 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 250 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 64.32 _pdbx_validate_torsion.psi 62.42 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (II) ION' FE2 3 '1,4-DIETHYLENE DIOXIDE' DIO 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 1 300 300 FE2 FE2 A . C 3 DIO 1 400 400 DIO DOX A . D 4 HOH 1 1 1 HOH HOH A . D 4 HOH 2 2 2 HOH HOH A . D 4 HOH 3 3 3 HOH HOH A . D 4 HOH 4 4 4 HOH HOH A . D 4 HOH 5 5 5 HOH HOH A . D 4 HOH 6 6 6 HOH HOH A . D 4 HOH 7 7 7 HOH HOH A . D 4 HOH 8 8 8 HOH HOH A . D 4 HOH 9 9 9 HOH HOH A . D 4 HOH 10 10 10 HOH HOH A . D 4 HOH 11 11 11 HOH HOH A . D 4 HOH 12 12 12 HOH HOH A . D 4 HOH 13 13 13 HOH HOH A . D 4 HOH 14 14 14 HOH HOH A . D 4 HOH 15 15 15 HOH HOH A . D 4 HOH 16 16 16 HOH HOH A . D 4 HOH 17 17 17 HOH HOH A . D 4 HOH 18 18 18 HOH HOH A . D 4 HOH 19 19 19 HOH HOH A . D 4 HOH 20 20 20 HOH HOH A . D 4 HOH 21 21 21 HOH HOH A . D 4 HOH 22 22 22 HOH HOH A . D 4 HOH 23 23 23 HOH HOH A . D 4 HOH 24 24 24 HOH HOH A . D 4 HOH 25 25 25 HOH HOH A . D 4 HOH 26 26 26 HOH HOH A . D 4 HOH 27 27 27 HOH HOH A . D 4 HOH 28 28 28 HOH HOH A . D 4 HOH 29 29 29 HOH HOH A . D 4 HOH 30 30 30 HOH HOH A . D 4 HOH 31 31 31 HOH HOH A . D 4 HOH 32 32 32 HOH HOH A . D 4 HOH 33 33 33 HOH HOH A . D 4 HOH 34 34 34 HOH HOH A . D 4 HOH 35 35 35 HOH HOH A . D 4 HOH 36 36 36 HOH HOH A . D 4 HOH 37 37 37 HOH HOH A . D 4 HOH 38 38 38 HOH HOH A . D 4 HOH 39 39 39 HOH HOH A . D 4 HOH 40 40 40 HOH HOH A . D 4 HOH 41 41 41 HOH HOH A . D 4 HOH 42 42 42 HOH HOH A . D 4 HOH 43 43 43 HOH HOH A . D 4 HOH 44 44 44 HOH HOH A . D 4 HOH 45 45 45 HOH HOH A . D 4 HOH 46 46 46 HOH HOH A . D 4 HOH 47 47 47 HOH HOH A . D 4 HOH 48 48 48 HOH HOH A . D 4 HOH 49 49 49 HOH HOH A . D 4 HOH 50 50 50 HOH HOH A . D 4 HOH 51 51 51 HOH HOH A . D 4 HOH 52 52 52 HOH HOH A . D 4 HOH 53 53 53 HOH HOH A . D 4 HOH 54 54 54 HOH HOH A . D 4 HOH 55 55 55 HOH HOH A . D 4 HOH 56 56 56 HOH HOH A . D 4 HOH 57 57 57 HOH HOH A . D 4 HOH 58 58 58 HOH HOH A . D 4 HOH 59 59 59 HOH HOH A . D 4 HOH 60 60 60 HOH HOH A . D 4 HOH 61 61 61 HOH HOH A . #