data_1AK0 # _entry.id 1AK0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1AK0 WWPDB D_1000170911 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AK0 _pdbx_database_status.recvd_initial_deposition_date 1997-05-28 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Romier, C.' 1 'Suck, D.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Recognition of single-stranded DNA by nuclease P1: high resolution crystal structures of complexes with substrate analogs.' Proteins 32 414 424 1998 PSFGEY US 0887-3585 0867 ? 9726413 '10.1002/(SICI)1097-0134(19980901)32:4<414::AID-PROT2>3.3.CO;2-5' 1 'Crystal Structure of Penicillium Citrinum P1 Nuclease at 2.8 A Resolution' 'Embo J.' 10 1607 ? 1991 EMJODG UK 0261-4189 0897 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Romier, C.' 1 ? primary 'Dominguez, R.' 2 ? primary 'Lahm, A.' 3 ? primary 'Dahl, O.' 4 ? primary 'Suck, D.' 5 ? 1 'Volbeda, A.' 6 ? 1 'Lahm, A.' 7 ? 1 'Sakiyama, F.' 8 ? 1 'Suck, D.' 9 ? # _cell.entry_id 1AK0 _cell.length_a 41.980 _cell.length_b 74.040 _cell.length_c 102.130 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AK0 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'P1 NUCLEASE' 29251.021 1 3.1.30.1 ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 5 non-polymer syn "ADENOSINE-5'-(DITHIO)PHOSPHATE" 379.352 1 ? ? ? ? 6 non-polymer syn "THYMIDINE-5'-(DITHIO)PHOSPHATE" 354.340 3 ? ? ? ? 7 water nat water 18.015 154 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC GSSGCSISAIANYTQRVSDSSLSSENHAEALRFLVHFIGDMTQPLHDEAYAVGGNKINVTFDGYHDNLHSDWDTYMPQKL IGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQTGDLYPTYYDS VIDTIELQIAKGGYRLANWINEIHGSEIAK ; _entity_poly.pdbx_seq_one_letter_code_can ;WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC GSSGCSISAIANYTQRVSDSSLSSENHAEALRFLVHFIGDMTQPLHDEAYAVGGNKINVTFDGYHDNLHSDWDTYMPQKL IGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQTGDLYPTYYDS VIDTIELQIAKGGYRLANWINEIHGSEIAK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TRP n 1 2 GLY n 1 3 ALA n 1 4 LEU n 1 5 GLY n 1 6 HIS n 1 7 ALA n 1 8 THR n 1 9 VAL n 1 10 ALA n 1 11 TYR n 1 12 VAL n 1 13 ALA n 1 14 GLN n 1 15 HIS n 1 16 TYR n 1 17 VAL n 1 18 SER n 1 19 PRO n 1 20 GLU n 1 21 ALA n 1 22 ALA n 1 23 SER n 1 24 TRP n 1 25 ALA n 1 26 GLN n 1 27 GLY n 1 28 ILE n 1 29 LEU n 1 30 GLY n 1 31 SER n 1 32 SER n 1 33 SER n 1 34 SER n 1 35 SER n 1 36 TYR n 1 37 LEU n 1 38 ALA n 1 39 SER n 1 40 ILE n 1 41 ALA n 1 42 SER n 1 43 TRP n 1 44 ALA n 1 45 ASP n 1 46 GLU n 1 47 TYR n 1 48 ARG n 1 49 LEU n 1 50 THR n 1 51 SER n 1 52 ALA n 1 53 GLY n 1 54 LYS n 1 55 TRP n 1 56 SER n 1 57 ALA n 1 58 SER n 1 59 LEU n 1 60 HIS n 1 61 PHE n 1 62 ILE n 1 63 ASP n 1 64 ALA n 1 65 GLU n 1 66 ASP n 1 67 ASN n 1 68 PRO n 1 69 PRO n 1 70 THR n 1 71 ASN n 1 72 CYS n 1 73 ASN n 1 74 VAL n 1 75 ASP n 1 76 TYR n 1 77 GLU n 1 78 ARG n 1 79 ASP n 1 80 CYS n 1 81 GLY n 1 82 SER n 1 83 SER n 1 84 GLY n 1 85 CYS n 1 86 SER n 1 87 ILE n 1 88 SER n 1 89 ALA n 1 90 ILE n 1 91 ALA n 1 92 ASN n 1 93 TYR n 1 94 THR n 1 95 GLN n 1 96 ARG n 1 97 VAL n 1 98 SER n 1 99 ASP n 1 100 SER n 1 101 SER n 1 102 LEU n 1 103 SER n 1 104 SER n 1 105 GLU n 1 106 ASN n 1 107 HIS n 1 108 ALA n 1 109 GLU n 1 110 ALA n 1 111 LEU n 1 112 ARG n 1 113 PHE n 1 114 LEU n 1 115 VAL n 1 116 HIS n 1 117 PHE n 1 118 ILE n 1 119 GLY n 1 120 ASP n 1 121 MET n 1 122 THR n 1 123 GLN n 1 124 PRO n 1 125 LEU n 1 126 HIS n 1 127 ASP n 1 128 GLU n 1 129 ALA n 1 130 TYR n 1 131 ALA n 1 132 VAL n 1 133 GLY n 1 134 GLY n 1 135 ASN n 1 136 LYS n 1 137 ILE n 1 138 ASN n 1 139 VAL n 1 140 THR n 1 141 PHE n 1 142 ASP n 1 143 GLY n 1 144 TYR n 1 145 HIS n 1 146 ASP n 1 147 ASN n 1 148 LEU n 1 149 HIS n 1 150 SER n 1 151 ASP n 1 152 TRP n 1 153 ASP n 1 154 THR n 1 155 TYR n 1 156 MET n 1 157 PRO n 1 158 GLN n 1 159 LYS n 1 160 LEU n 1 161 ILE n 1 162 GLY n 1 163 GLY n 1 164 HIS n 1 165 ALA n 1 166 LEU n 1 167 SER n 1 168 ASP n 1 169 ALA n 1 170 GLU n 1 171 SER n 1 172 TRP n 1 173 ALA n 1 174 LYS n 1 175 THR n 1 176 LEU n 1 177 VAL n 1 178 GLN n 1 179 ASN n 1 180 ILE n 1 181 GLU n 1 182 SER n 1 183 GLY n 1 184 ASN n 1 185 TYR n 1 186 THR n 1 187 ALA n 1 188 GLN n 1 189 ALA n 1 190 ILE n 1 191 GLY n 1 192 TRP n 1 193 ILE n 1 194 LYS n 1 195 GLY n 1 196 ASP n 1 197 ASN n 1 198 ILE n 1 199 SER n 1 200 GLU n 1 201 PRO n 1 202 ILE n 1 203 THR n 1 204 THR n 1 205 ALA n 1 206 THR n 1 207 ARG n 1 208 TRP n 1 209 ALA n 1 210 SER n 1 211 ASP n 1 212 ALA n 1 213 ASN n 1 214 ALA n 1 215 LEU n 1 216 VAL n 1 217 CYS n 1 218 THR n 1 219 VAL n 1 220 VAL n 1 221 MET n 1 222 PRO n 1 223 HIS n 1 224 GLY n 1 225 ALA n 1 226 ALA n 1 227 ALA n 1 228 LEU n 1 229 GLN n 1 230 THR n 1 231 GLY n 1 232 ASP n 1 233 LEU n 1 234 TYR n 1 235 PRO n 1 236 THR n 1 237 TYR n 1 238 TYR n 1 239 ASP n 1 240 SER n 1 241 VAL n 1 242 ILE n 1 243 ASP n 1 244 THR n 1 245 ILE n 1 246 GLU n 1 247 LEU n 1 248 GLN n 1 249 ILE n 1 250 ALA n 1 251 LYS n 1 252 GLY n 1 253 GLY n 1 254 TYR n 1 255 ARG n 1 256 LEU n 1 257 ALA n 1 258 ASN n 1 259 TRP n 1 260 ILE n 1 261 ASN n 1 262 GLU n 1 263 ILE n 1 264 HIS n 1 265 GLY n 1 266 SER n 1 267 GLU n 1 268 ILE n 1 269 ALA n 1 270 LYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Penicillium citrinum' _entity_src_nat.pdbx_ncbi_taxonomy_id 5077 _entity_src_nat.genus Penicillium _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NUP1_PENCI _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P24289 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC GSSGCSISAIANYTQRVSDSSLSSENHAEALRFLVHFIGDMTQPLHDEAYAVGGNKINVTFDGYHDNLHSDWDTYMPQKL IGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQTGDLYPTYYDS VIDTIELQIAKGGYRLANWINEIHGSEIAK ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1AK0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 270 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P24289 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 270 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 270 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADS non-polymer . "ADENOSINE-5'-(DITHIO)PHOSPHATE" ? 'C10 H14 N5 O5 P S2' 379.352 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 THS non-polymer . "THYMIDINE-5'-(DITHIO)PHOSPHATE" ? 'C10 H15 N2 O6 P S2' 354.340 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 1AK0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_percent_sol 54.65 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.3 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PEG 6000 12 - 20% 25 MM NA ACETATE PH 5.3' # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1994-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRAPHITE(002)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ENRAF-NONIUS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AK0 _reflns.observed_criterion_sigma_I 2. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 1.8 _reflns.number_obs 27854 _reflns.number_all ? _reflns.percent_possible_obs 93.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.068 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.3 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.95 _reflns_shell.percent_possible_all 89.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.247 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1AK0 _refine.ls_number_reflns_obs 27019 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 10000000. _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 1.8 _refine.ls_percent_reflns_obs 89.1 _refine.ls_R_factor_obs 0.207 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.207 _refine.ls_R_factor_R_free 0.235 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10. _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 22.8 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1AK0 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 8.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2021 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 138 _refine_hist.number_atoms_solvent 154 _refine_hist.number_atoms_total 2313 _refine_hist.d_res_high 1.8 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.5 ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.0 ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 2.0 ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 2.5 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 PARAM3.CHO TOPH3.CHO 'X-RAY DIFFRACTION' 3 PARNAH1E.DNA TOPNAH1E.DNA 'X-RAY DIFFRACTION' # _struct.entry_id 1AK0 _struct.title 'P1 NUCLEASE IN COMPLEX WITH A SUBSTRATE ANALOG' _struct.pdbx_descriptor ;P1 NUCLEASE, ADENOSINE-5'-(DITHIO)PHOSPHATE, THYMIDINE-5'-(DITHIO)PHOSPHATE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AK0 _struct_keywords.pdbx_keywords ENDONUCLEASE _struct_keywords.text 'ENDONUCLEASE, P1 NUCLEASE, REACTION MECHANISM, THIOPHOSPHORYLATED OLIGONUCLEOTIDES, GLYCOSYLATED PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 6 ? K N N 6 ? L N N 6 ? M N N 7 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 3 ? TYR A 16 ? ALA A 3 TYR A 16 1 ? 14 HELX_P HELX_P2 2 PRO A 19 ? LEU A 29 ? PRO A 19 LEU A 29 1 ? 11 HELX_P HELX_P3 3 ALA A 38 ? ILE A 40 ? ALA A 38 ILE A 40 5 ? 3 HELX_P HELX_P4 4 TRP A 43 ? LEU A 49 ? TRP A 43 LEU A 49 1 ? 7 HELX_P HELX_P5 5 LYS A 54 ? HIS A 60 ? LYS A 54 HIS A 60 5 ? 7 HELX_P HELX_P6 6 TYR A 76 ? ASP A 79 ? TYR A 76 ASP A 79 1 ? 4 HELX_P HELX_P7 7 SER A 86 ? VAL A 97 ? SER A 86 VAL A 97 1 ? 12 HELX_P HELX_P8 8 SER A 104 ? THR A 122 ? SER A 104 THR A 122 1 ? 19 HELX_P HELX_P9 9 PRO A 124 ? ASP A 127 ? PRO A 124 ASP A 127 5 ? 4 HELX_P HELX_P10 10 TYR A 130 ? GLY A 133 ? TYR A 130 GLY A 133 1 ? 4 HELX_P HELX_P11 11 LEU A 148 ? ASP A 153 ? LEU A 148 ASP A 153 1 ? 6 HELX_P HELX_P12 12 TYR A 155 ? ILE A 161 ? TYR A 155 ILE A 161 1 ? 7 HELX_P HELX_P13 13 LEU A 166 ? SER A 182 ? LEU A 166 SER A 182 1 ? 17 HELX_P HELX_P14 14 THR A 186 ? TRP A 192 ? THR A 186 TRP A 192 1 ? 7 HELX_P HELX_P15 15 ILE A 198 ? THR A 218 ? ILE A 198 THR A 218 5 ? 21 HELX_P HELX_P16 16 ALA A 226 ? LEU A 228 ? ALA A 226 LEU A 228 5 ? 3 HELX_P HELX_P17 17 THR A 236 ? GLU A 262 ? THR A 236 GLU A 262 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 72 SG ? ? ? 1_555 A CYS 217 SG ? ? A CYS 72 A CYS 217 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf2 disulf ? ? A CYS 80 SG ? ? ? 1_555 A CYS 85 SG ? ? A CYS 80 A CYS 85 1_555 ? ? ? ? ? ? ? 2.051 ? ? covale1 covale one ? A ASN 92 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 92 B NAG 1 1_555 ? ? ? ? ? ? ? 1.464 ? N-Glycosylation covale2 covale one ? A ASN 138 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 138 A NAG 287 1_555 ? ? ? ? ? ? ? 1.449 ? N-Glycosylation covale3 covale one ? A ASN 197 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 197 A NAG 285 1_555 ? ? ? ? ? ? ? 1.471 ? N-Glycosylation covale4 covale one ? I ADS . "O3'" ? ? ? 1_555 J THS . P ? ? A ADS 292 A THS 293 1_555 ? ? ? ? ? ? ? 1.638 ? ? covale5 covale one ? J THS . "O3'" ? ? ? 1_555 K THS . P ? ? A THS 293 A THS 294 1_555 ? ? ? ? ? ? ? 1.669 ? ? covale6 covale one ? K THS . "O3'" ? ? ? 1_555 L THS . P ? ? A THS 294 A THS 295 1_555 ? ? ? ? ? ? ? 1.642 ? ? covale7 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.387 ? ? metalc1 metalc ? ? A TRP 1 O ? ? ? 1_555 G ZN . ZN ? ? A TRP 1 A ZN 273 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc2 metalc ? ? A TRP 1 N ? ? ? 1_555 G ZN . ZN ? ? A TRP 1 A ZN 273 1_555 ? ? ? ? ? ? ? 2.529 ? ? metalc3 metalc ? ? A HIS 6 NE2 ? ? ? 1_555 G ZN . ZN ? ? A HIS 6 A ZN 273 1_555 ? ? ? ? ? ? ? 2.267 ? ? metalc4 metalc ? ? A HIS 15 NE2 ? ? ? 1_555 H ZN . ZN ? ? A HIS 15 A ZN 274 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc5 metalc ? ? A ASP 45 OD1 ? ? ? 1_555 E ZN . ZN ? ? A ASP 45 A ZN 271 1_555 ? ? ? ? ? ? ? 2.770 ? ? metalc6 metalc ? ? A HIS 60 ND1 ? ? ? 1_555 E ZN . ZN ? ? A HIS 60 A ZN 271 1_555 ? ? ? ? ? ? ? 2.310 ? ? metalc7 metalc ? ? A HIS 116 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 116 A ZN 271 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc8 metalc ? ? A ASP 120 OD2 ? ? ? 1_555 E ZN . ZN ? ? A ASP 120 A ZN 271 1_555 ? ? ? ? ? ? ? 2.008 ? ? metalc9 metalc ? ? A ASP 120 OD1 ? ? ? 1_555 G ZN . ZN ? ? A ASP 120 A ZN 273 1_555 ? ? ? ? ? ? ? 1.984 ? ? metalc10 metalc ? ? A HIS 126 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 126 A ZN 272 1_555 ? ? ? ? ? ? ? 2.316 ? ? metalc11 metalc ? ? A HIS 149 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 149 A ZN 272 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc12 metalc ? ? A ASP 153 OD2 ? ? ? 1_555 F ZN . ZN ? ? A ASP 153 A ZN 272 1_555 ? ? ? ? ? ? ? 1.972 ? ? metalc13 metalc ? ? A ASP 153 OD1 ? ? ? 1_555 F ZN . ZN ? ? A ASP 153 A ZN 272 1_555 ? ? ? ? ? ? ? 2.775 ? ? metalc14 metalc ? ? A GLU 181 CD ? ? ? 1_555 H ZN . ZN ? ? A GLU 181 A ZN 274 1_555 ? ? ? ? ? ? ? 2.361 ? ? metalc15 metalc ? ? A GLU 181 OE2 ? ? ? 1_555 H ZN . ZN ? ? A GLU 181 A ZN 274 1_555 ? ? ? ? ? ? ? 1.805 ? ? metalc16 metalc ? ? A GLU 181 OE1 ? ? ? 1_555 H ZN . ZN ? ? A GLU 181 A ZN 274 1_555 ? ? ? ? ? ? ? 2.488 ? ? metalc17 metalc ? ? A HIS 223 ND1 ? ? ? 3_655 H ZN . ZN ? ? A HIS 223 A ZN 274 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc18 metalc ? ? F ZN . ZN ? ? ? 1_555 L THS . "O3'" ? ? A ZN 272 A THS 295 1_555 ? ? ? ? ? ? ? 2.015 ? ? metalc19 metalc ? ? H ZN . ZN ? ? ? 1_555 M HOH . O ? ? A ZN 274 A HOH 539 1_555 ? ? ? ? ? ? ? 2.017 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 68 A . ? PRO 68 A PRO 69 A ? PRO 69 A 1 0.35 2 TYR 234 A . ? TYR 234 A PRO 235 A ? PRO 235 A 1 -4.87 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 138 ? PHE A 141 ? ASN A 138 PHE A 141 A 2 TYR A 144 ? ASN A 147 ? TYR A 144 ASN A 147 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id O _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 139 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id O _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 139 _pdbx_struct_sheet_hbond.range_2_label_atom_id N _pdbx_struct_sheet_hbond.range_2_label_comp_id ASP _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 146 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id N _pdbx_struct_sheet_hbond.range_2_auth_comp_id ASP _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 146 # _database_PDB_matrix.entry_id 1AK0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1AK0 _atom_sites.fract_transf_matrix[1][1] 0.023821 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013506 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009791 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TRP 1 1 1 TRP TRP A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 TRP 24 24 24 TRP TRP A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 TRP 43 43 43 TRP TRP A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 TRP 55 55 55 TRP TRP A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 CYS 72 72 72 CYS CYS A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 CYS 85 85 85 CYS CYS A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 HIS 107 107 107 HIS HIS A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 HIS 116 116 116 HIS HIS A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 MET 121 121 121 MET MET A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 HIS 126 126 126 HIS HIS A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 TYR 130 130 130 TYR TYR A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 ASN 135 135 135 ASN ASN A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 THR 140 140 140 THR THR A . n A 1 141 PHE 141 141 141 PHE PHE A . n A 1 142 ASP 142 142 142 ASP ASP A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 TYR 144 144 144 TYR TYR A . n A 1 145 HIS 145 145 145 HIS HIS A . n A 1 146 ASP 146 146 146 ASP ASP A . n A 1 147 ASN 147 147 147 ASN ASN A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 HIS 149 149 149 HIS HIS A . n A 1 150 SER 150 150 150 SER SER A . n A 1 151 ASP 151 151 151 ASP ASP A . n A 1 152 TRP 152 152 152 TRP TRP A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 TYR 155 155 155 TYR TYR A . n A 1 156 MET 156 156 156 MET MET A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 GLN 158 158 158 GLN GLN A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 ILE 161 161 161 ILE ILE A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 GLY 163 163 163 GLY GLY A . n A 1 164 HIS 164 164 164 HIS HIS A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 ALA 169 169 169 ALA ALA A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 TRP 172 172 172 TRP TRP A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 THR 175 175 175 THR THR A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 GLN 178 178 178 GLN GLN A . n A 1 179 ASN 179 179 179 ASN ASN A . n A 1 180 ILE 180 180 180 ILE ILE A . n A 1 181 GLU 181 181 181 GLU GLU A . n A 1 182 SER 182 182 182 SER SER A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 ASN 184 184 184 ASN ASN A . n A 1 185 TYR 185 185 185 TYR TYR A . n A 1 186 THR 186 186 186 THR THR A . n A 1 187 ALA 187 187 187 ALA ALA A . n A 1 188 GLN 188 188 188 GLN GLN A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 ILE 190 190 190 ILE ILE A . n A 1 191 GLY 191 191 191 GLY GLY A . n A 1 192 TRP 192 192 192 TRP TRP A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 LYS 194 194 194 LYS LYS A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 ASP 196 196 196 ASP ASP A . n A 1 197 ASN 197 197 197 ASN ASN A . n A 1 198 ILE 198 198 198 ILE ILE A . n A 1 199 SER 199 199 199 SER SER A . n A 1 200 GLU 200 200 200 GLU GLU A . n A 1 201 PRO 201 201 201 PRO PRO A . n A 1 202 ILE 202 202 202 ILE ILE A . n A 1 203 THR 203 203 203 THR THR A . n A 1 204 THR 204 204 204 THR THR A . n A 1 205 ALA 205 205 205 ALA ALA A . n A 1 206 THR 206 206 206 THR THR A . n A 1 207 ARG 207 207 207 ARG ARG A . n A 1 208 TRP 208 208 208 TRP TRP A . n A 1 209 ALA 209 209 209 ALA ALA A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 ASP 211 211 211 ASP ASP A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 ASN 213 213 213 ASN ASN A . n A 1 214 ALA 214 214 214 ALA ALA A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 VAL 216 216 216 VAL VAL A . n A 1 217 CYS 217 217 217 CYS CYS A . n A 1 218 THR 218 218 218 THR THR A . n A 1 219 VAL 219 219 219 VAL VAL A . n A 1 220 VAL 220 220 220 VAL VAL A . n A 1 221 MET 221 221 221 MET MET A . n A 1 222 PRO 222 222 222 PRO PRO A . n A 1 223 HIS 223 223 223 HIS HIS A . n A 1 224 GLY 224 224 224 GLY GLY A . n A 1 225 ALA 225 225 225 ALA ALA A . n A 1 226 ALA 226 226 226 ALA ALA A . n A 1 227 ALA 227 227 227 ALA ALA A . n A 1 228 LEU 228 228 228 LEU LEU A . n A 1 229 GLN 229 229 229 GLN GLN A . n A 1 230 THR 230 230 230 THR THR A . n A 1 231 GLY 231 231 231 GLY GLY A . n A 1 232 ASP 232 232 232 ASP ASP A . n A 1 233 LEU 233 233 233 LEU LEU A . n A 1 234 TYR 234 234 234 TYR TYR A . n A 1 235 PRO 235 235 235 PRO PRO A . n A 1 236 THR 236 236 236 THR THR A . n A 1 237 TYR 237 237 237 TYR TYR A . n A 1 238 TYR 238 238 238 TYR TYR A . n A 1 239 ASP 239 239 239 ASP ASP A . n A 1 240 SER 240 240 240 SER SER A . n A 1 241 VAL 241 241 241 VAL VAL A . n A 1 242 ILE 242 242 242 ILE ILE A . n A 1 243 ASP 243 243 243 ASP ASP A . n A 1 244 THR 244 244 244 THR THR A . n A 1 245 ILE 245 245 245 ILE ILE A . n A 1 246 GLU 246 246 246 GLU GLU A . n A 1 247 LEU 247 247 247 LEU LEU A . n A 1 248 GLN 248 248 248 GLN GLN A . n A 1 249 ILE 249 249 249 ILE ILE A . n A 1 250 ALA 250 250 250 ALA ALA A . n A 1 251 LYS 251 251 251 LYS LYS A . n A 1 252 GLY 252 252 252 GLY GLY A . n A 1 253 GLY 253 253 253 GLY GLY A . n A 1 254 TYR 254 254 254 TYR TYR A . n A 1 255 ARG 255 255 255 ARG ARG A . n A 1 256 LEU 256 256 256 LEU LEU A . n A 1 257 ALA 257 257 257 ALA ALA A . n A 1 258 ASN 258 258 258 ASN ASN A . n A 1 259 TRP 259 259 259 TRP TRP A . n A 1 260 ILE 260 260 260 ILE ILE A . n A 1 261 ASN 261 261 261 ASN ASN A . n A 1 262 GLU 262 262 262 GLU GLU A . n A 1 263 ILE 263 263 263 ILE ILE A . n A 1 264 HIS 264 264 264 HIS HIS A . n A 1 265 GLY 265 265 ? ? ? A . n A 1 266 SER 266 266 ? ? ? A . n A 1 267 GLU 267 267 ? ? ? A . n A 1 268 ILE 268 268 ? ? ? A . n A 1 269 ALA 269 269 ? ? ? A . n A 1 270 LYS 270 270 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 285 285 NAG NAG A . D 3 NAG 1 287 287 NAG NAG A . E 4 ZN 1 271 271 ZN ZN A . F 4 ZN 1 272 272 ZN ZN A . G 4 ZN 1 273 273 ZN ZN A . H 4 ZN 1 274 274 ZN ZN A . I 5 ADS 1 292 292 ADS ADS A . J 6 THS 1 293 293 THS THS A . K 6 THS 1 294 294 THS THS A . L 6 THS 1 295 295 THS THS A . M 7 HOH 1 400 400 HOH HOH A . M 7 HOH 2 401 401 HOH HOH A . M 7 HOH 3 402 402 HOH HOH A . M 7 HOH 4 403 403 HOH HOH A . M 7 HOH 5 404 404 HOH HOH A . M 7 HOH 6 405 405 HOH HOH A . M 7 HOH 7 406 406 HOH HOH A . M 7 HOH 8 407 407 HOH HOH A . M 7 HOH 9 408 408 HOH HOH A . M 7 HOH 10 409 409 HOH HOH A . M 7 HOH 11 410 410 HOH HOH A . M 7 HOH 12 411 411 HOH HOH A . M 7 HOH 13 412 412 HOH HOH A . M 7 HOH 14 413 413 HOH HOH A . M 7 HOH 15 414 414 HOH HOH A . M 7 HOH 16 415 415 HOH HOH A . M 7 HOH 17 416 416 HOH HOH A . M 7 HOH 18 417 417 HOH HOH A . M 7 HOH 19 418 418 HOH HOH A . M 7 HOH 20 419 419 HOH HOH A . M 7 HOH 21 420 420 HOH HOH A . M 7 HOH 22 421 421 HOH HOH A . M 7 HOH 23 422 422 HOH HOH A . M 7 HOH 24 423 423 HOH HOH A . M 7 HOH 25 424 424 HOH HOH A . M 7 HOH 26 425 425 HOH HOH A . M 7 HOH 27 426 426 HOH HOH A . M 7 HOH 28 427 427 HOH HOH A . M 7 HOH 29 428 428 HOH HOH A . M 7 HOH 30 429 429 HOH HOH A . M 7 HOH 31 430 430 HOH HOH A . M 7 HOH 32 431 431 HOH HOH A . M 7 HOH 33 432 432 HOH HOH A . M 7 HOH 34 433 433 HOH HOH A . M 7 HOH 35 434 434 HOH HOH A . M 7 HOH 36 435 435 HOH HOH A . M 7 HOH 37 436 436 HOH HOH A . M 7 HOH 38 437 437 HOH HOH A . M 7 HOH 39 438 438 HOH HOH A . M 7 HOH 40 439 439 HOH HOH A . M 7 HOH 41 440 440 HOH HOH A . M 7 HOH 42 441 441 HOH HOH A . M 7 HOH 43 442 442 HOH HOH A . M 7 HOH 44 443 443 HOH HOH A . M 7 HOH 45 444 444 HOH HOH A . M 7 HOH 46 445 445 HOH HOH A . M 7 HOH 47 446 446 HOH HOH A . M 7 HOH 48 447 447 HOH HOH A . M 7 HOH 49 448 448 HOH HOH A . M 7 HOH 50 449 449 HOH HOH A . M 7 HOH 51 450 450 HOH HOH A . M 7 HOH 52 451 451 HOH HOH A . M 7 HOH 53 452 452 HOH HOH A . M 7 HOH 54 453 453 HOH HOH A . M 7 HOH 55 454 454 HOH HOH A . M 7 HOH 56 455 455 HOH HOH A . M 7 HOH 57 456 456 HOH HOH A . M 7 HOH 58 457 457 HOH HOH A . M 7 HOH 59 458 458 HOH HOH A . M 7 HOH 60 459 459 HOH HOH A . M 7 HOH 61 460 460 HOH HOH A . M 7 HOH 62 461 461 HOH HOH A . M 7 HOH 63 462 462 HOH HOH A . M 7 HOH 64 463 463 HOH HOH A . M 7 HOH 65 464 464 HOH HOH A . M 7 HOH 66 465 465 HOH HOH A . M 7 HOH 67 466 466 HOH HOH A . M 7 HOH 68 467 467 HOH HOH A . M 7 HOH 69 468 468 HOH HOH A . M 7 HOH 70 469 469 HOH HOH A . M 7 HOH 71 470 470 HOH HOH A . M 7 HOH 72 471 471 HOH HOH A . M 7 HOH 73 472 472 HOH HOH A . M 7 HOH 74 473 473 HOH HOH A . M 7 HOH 75 474 474 HOH HOH A . M 7 HOH 76 475 475 HOH HOH A . M 7 HOH 77 476 476 HOH HOH A . M 7 HOH 78 477 477 HOH HOH A . M 7 HOH 79 478 478 HOH HOH A . M 7 HOH 80 479 479 HOH HOH A . M 7 HOH 81 480 480 HOH HOH A . M 7 HOH 82 481 481 HOH HOH A . M 7 HOH 83 482 482 HOH HOH A . M 7 HOH 84 483 483 HOH HOH A . M 7 HOH 85 484 484 HOH HOH A . M 7 HOH 86 485 485 HOH HOH A . M 7 HOH 87 486 486 HOH HOH A . M 7 HOH 88 487 487 HOH HOH A . M 7 HOH 89 488 488 HOH HOH A . M 7 HOH 90 489 489 HOH HOH A . M 7 HOH 91 490 490 HOH HOH A . M 7 HOH 92 491 491 HOH HOH A . M 7 HOH 93 492 492 HOH HOH A . M 7 HOH 94 493 493 HOH HOH A . M 7 HOH 95 494 494 HOH HOH A . M 7 HOH 96 495 495 HOH HOH A . M 7 HOH 97 496 496 HOH HOH A . M 7 HOH 98 497 497 HOH HOH A . M 7 HOH 99 498 498 HOH HOH A . M 7 HOH 100 499 499 HOH HOH A . M 7 HOH 101 500 500 HOH HOH A . M 7 HOH 102 501 501 HOH HOH A . M 7 HOH 103 502 502 HOH HOH A . M 7 HOH 104 503 503 HOH HOH A . M 7 HOH 105 504 504 HOH HOH A . M 7 HOH 106 505 505 HOH HOH A . M 7 HOH 107 506 506 HOH HOH A . M 7 HOH 108 507 507 HOH HOH A . M 7 HOH 109 508 508 HOH HOH A . M 7 HOH 110 509 509 HOH HOH A . M 7 HOH 111 510 510 HOH HOH A . M 7 HOH 112 511 511 HOH HOH A . M 7 HOH 113 512 512 HOH HOH A . M 7 HOH 114 513 513 HOH HOH A . M 7 HOH 115 514 514 HOH HOH A . M 7 HOH 116 515 515 HOH HOH A . M 7 HOH 117 516 516 HOH HOH A . M 7 HOH 118 517 517 HOH HOH A . M 7 HOH 119 518 518 HOH HOH A . M 7 HOH 120 519 519 HOH HOH A . M 7 HOH 121 520 520 HOH HOH A . M 7 HOH 122 521 521 HOH HOH A . M 7 HOH 123 522 522 HOH HOH A . M 7 HOH 124 523 523 HOH HOH A . M 7 HOH 125 524 524 HOH HOH A . M 7 HOH 126 525 525 HOH HOH A . M 7 HOH 127 526 526 HOH HOH A . M 7 HOH 128 527 527 HOH HOH A . M 7 HOH 129 528 528 HOH HOH A . M 7 HOH 130 529 529 HOH HOH A . M 7 HOH 131 530 530 HOH HOH A . M 7 HOH 132 531 531 HOH HOH A . M 7 HOH 133 532 532 HOH HOH A . M 7 HOH 134 533 533 HOH HOH A . M 7 HOH 135 534 534 HOH HOH A . M 7 HOH 136 535 535 HOH HOH A . M 7 HOH 137 536 536 HOH HOH A . M 7 HOH 138 537 537 HOH HOH A . M 7 HOH 139 538 538 HOH HOH A . M 7 HOH 140 539 539 HOH HOH A . M 7 HOH 141 540 540 HOH HOH A . M 7 HOH 142 541 541 HOH HOH A . M 7 HOH 143 542 542 HOH HOH A . M 7 HOH 144 543 543 HOH HOH A . M 7 HOH 145 544 544 HOH HOH A . M 7 HOH 146 545 545 HOH HOH A . M 7 HOH 147 546 546 HOH HOH A . M 7 HOH 148 547 547 HOH HOH A . M 7 HOH 149 548 548 HOH HOH A . M 7 HOH 150 549 549 HOH HOH A . M 7 HOH 151 550 550 HOH HOH A . M 7 HOH 152 551 551 HOH HOH A . M 7 HOH 153 552 552 HOH HOH A . M 7 HOH 154 553 553 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 92 A ASN 92 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 197 A ASN 197 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 138 A ASN 138 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A TRP 1 ? A TRP 1 ? 1_555 ZN ? G ZN . ? A ZN 273 ? 1_555 N ? A TRP 1 ? A TRP 1 ? 1_555 72.5 ? 2 O ? A TRP 1 ? A TRP 1 ? 1_555 ZN ? G ZN . ? A ZN 273 ? 1_555 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 99.8 ? 3 N ? A TRP 1 ? A TRP 1 ? 1_555 ZN ? G ZN . ? A ZN 273 ? 1_555 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 113.2 ? 4 O ? A TRP 1 ? A TRP 1 ? 1_555 ZN ? G ZN . ? A ZN 273 ? 1_555 OD1 ? A ASP 120 ? A ASP 120 ? 1_555 166.3 ? 5 N ? A TRP 1 ? A TRP 1 ? 1_555 ZN ? G ZN . ? A ZN 273 ? 1_555 OD1 ? A ASP 120 ? A ASP 120 ? 1_555 94.0 ? 6 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 ZN ? G ZN . ? A ZN 273 ? 1_555 OD1 ? A ASP 120 ? A ASP 120 ? 1_555 87.5 ? 7 NE2 ? A HIS 15 ? A HIS 15 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 CD ? A GLU 181 ? A GLU 181 ? 1_555 104.9 ? 8 NE2 ? A HIS 15 ? A HIS 15 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 OE2 ? A GLU 181 ? A GLU 181 ? 1_555 87.5 ? 9 CD ? A GLU 181 ? A GLU 181 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 OE2 ? A GLU 181 ? A GLU 181 ? 1_555 30.9 ? 10 NE2 ? A HIS 15 ? A HIS 15 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 OE1 ? A GLU 181 ? A GLU 181 ? 1_555 104.8 ? 11 CD ? A GLU 181 ? A GLU 181 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 OE1 ? A GLU 181 ? A GLU 181 ? 1_555 29.5 ? 12 OE2 ? A GLU 181 ? A GLU 181 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 OE1 ? A GLU 181 ? A GLU 181 ? 1_555 58.3 ? 13 NE2 ? A HIS 15 ? A HIS 15 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 ND1 ? A HIS 223 ? A HIS 223 ? 3_655 106.9 ? 14 CD ? A GLU 181 ? A GLU 181 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 ND1 ? A HIS 223 ? A HIS 223 ? 3_655 104.4 ? 15 OE2 ? A GLU 181 ? A GLU 181 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 ND1 ? A HIS 223 ? A HIS 223 ? 3_655 85.7 ? 16 OE1 ? A GLU 181 ? A GLU 181 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 ND1 ? A HIS 223 ? A HIS 223 ? 3_655 130.2 ? 17 NE2 ? A HIS 15 ? A HIS 15 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 O ? M HOH . ? A HOH 539 ? 1_555 96.5 ? 18 CD ? A GLU 181 ? A GLU 181 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 O ? M HOH . ? A HOH 539 ? 1_555 131.5 ? 19 OE2 ? A GLU 181 ? A GLU 181 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 O ? M HOH . ? A HOH 539 ? 1_555 161.5 ? 20 OE1 ? A GLU 181 ? A GLU 181 ? 1_555 ZN ? H ZN . ? A ZN 274 ? 1_555 O ? M HOH . ? A HOH 539 ? 1_555 103.2 ? 21 ND1 ? A HIS 223 ? A HIS 223 ? 3_655 ZN ? H ZN . ? A ZN 274 ? 1_555 O ? M HOH . ? A HOH 539 ? 1_555 110.2 ? 22 OD1 ? A ASP 45 ? A ASP 45 ? 1_555 ZN ? E ZN . ? A ZN 271 ? 1_555 ND1 ? A HIS 60 ? A HIS 60 ? 1_555 80.7 ? 23 OD1 ? A ASP 45 ? A ASP 45 ? 1_555 ZN ? E ZN . ? A ZN 271 ? 1_555 NE2 ? A HIS 116 ? A HIS 116 ? 1_555 75.0 ? 24 ND1 ? A HIS 60 ? A HIS 60 ? 1_555 ZN ? E ZN . ? A ZN 271 ? 1_555 NE2 ? A HIS 116 ? A HIS 116 ? 1_555 101.4 ? 25 OD1 ? A ASP 45 ? A ASP 45 ? 1_555 ZN ? E ZN . ? A ZN 271 ? 1_555 OD2 ? A ASP 120 ? A ASP 120 ? 1_555 172.6 ? 26 ND1 ? A HIS 60 ? A HIS 60 ? 1_555 ZN ? E ZN . ? A ZN 271 ? 1_555 OD2 ? A ASP 120 ? A ASP 120 ? 1_555 103.5 ? 27 NE2 ? A HIS 116 ? A HIS 116 ? 1_555 ZN ? E ZN . ? A ZN 271 ? 1_555 OD2 ? A ASP 120 ? A ASP 120 ? 1_555 98.0 ? 28 NE2 ? A HIS 126 ? A HIS 126 ? 1_555 ZN ? F ZN . ? A ZN 272 ? 1_555 NE2 ? A HIS 149 ? A HIS 149 ? 1_555 95.3 ? 29 NE2 ? A HIS 126 ? A HIS 126 ? 1_555 ZN ? F ZN . ? A ZN 272 ? 1_555 OD2 ? A ASP 153 ? A ASP 153 ? 1_555 143.9 ? 30 NE2 ? A HIS 149 ? A HIS 149 ? 1_555 ZN ? F ZN . ? A ZN 272 ? 1_555 OD2 ? A ASP 153 ? A ASP 153 ? 1_555 96.0 ? 31 NE2 ? A HIS 126 ? A HIS 126 ? 1_555 ZN ? F ZN . ? A ZN 272 ? 1_555 OD1 ? A ASP 153 ? A ASP 153 ? 1_555 93.9 ? 32 NE2 ? A HIS 149 ? A HIS 149 ? 1_555 ZN ? F ZN . ? A ZN 272 ? 1_555 OD1 ? A ASP 153 ? A ASP 153 ? 1_555 92.2 ? 33 OD2 ? A ASP 153 ? A ASP 153 ? 1_555 ZN ? F ZN . ? A ZN 272 ? 1_555 OD1 ? A ASP 153 ? A ASP 153 ? 1_555 51.5 ? 34 NE2 ? A HIS 126 ? A HIS 126 ? 1_555 ZN ? F ZN . ? A ZN 272 ? 1_555 "O3'" ? L THS . ? A THS 295 ? 1_555 111.2 ? 35 NE2 ? A HIS 149 ? A HIS 149 ? 1_555 ZN ? F ZN . ? A ZN 272 ? 1_555 "O3'" ? L THS . ? A THS 295 ? 1_555 100.2 ? 36 OD2 ? A ASP 153 ? A ASP 153 ? 1_555 ZN ? F ZN . ? A ZN 272 ? 1_555 "O3'" ? L THS . ? A THS 295 ? 1_555 100.3 ? 37 OD1 ? A ASP 153 ? A ASP 153 ? 1_555 ZN ? F ZN . ? A ZN 272 ? 1_555 "O3'" ? L THS . ? A THS 295 ? 1_555 150.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-12-03 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly_gen 13 4 'Structure model' pdbx_struct_conn_angle 14 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_conn_type 18 4 'Structure model' struct_site 19 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_asym_id' 2 4 'Structure model' '_atom_site.auth_seq_id' 3 4 'Structure model' '_atom_site.label_asym_id' 4 4 'Structure model' '_atom_site.label_entity_id' 5 4 'Structure model' '_chem_comp.name' 6 4 'Structure model' '_chem_comp.type' 7 4 'Structure model' '_pdbx_entity_nonpoly.entity_id' 8 4 'Structure model' '_pdbx_entity_nonpoly.name' 9 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 26 4 'Structure model' '_pdbx_struct_conn_angle.value' 27 4 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_asym_id' 28 4 'Structure model' '_struct_conn.conn_type_id' 29 4 'Structure model' '_struct_conn.id' 30 4 'Structure model' '_struct_conn.pdbx_dist_value' 31 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 32 4 'Structure model' '_struct_conn.pdbx_role' 33 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 34 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 35 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 36 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 37 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 38 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 39 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 40 4 'Structure model' '_struct_conn.ptnr1_symmetry' 41 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 42 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 43 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 44 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 45 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 46 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 47 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 48 4 'Structure model' '_struct_conn.ptnr2_symmetry' 49 4 'Structure model' '_struct_conn_type.id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 XDS 'data reduction' . ? 2 X-PLOR 'model building' 3.1 ? 3 X-PLOR refinement 3.1 ? 4 X-PLOR phasing 3.1 ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O7 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 NAG _pdbx_validate_close_contact.auth_seq_id_1 287 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 552 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLU _pdbx_validate_rmsd_angle.auth_seq_id_1 105 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLU _pdbx_validate_rmsd_angle.auth_seq_id_2 105 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLU _pdbx_validate_rmsd_angle.auth_seq_id_3 105 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.60 _pdbx_validate_rmsd_angle.angle_target_value 110.40 _pdbx_validate_rmsd_angle.angle_deviation 13.20 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.00 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 66 ? ? -110.16 -158.88 2 1 TYR A 130 ? ? -37.70 125.45 3 1 ASP A 146 ? ? -112.59 -169.64 4 1 THR A 154 ? ? -122.14 -58.80 5 1 SER A 182 ? ? -149.34 58.71 6 1 GLU A 200 ? ? -145.62 55.30 7 1 GLN A 229 ? ? -99.08 36.12 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A ADS 292 ? P ? I ADS 1 P 2 1 N 1 A ADS 292 ? O1P ? I ADS 1 O1P 3 1 N 1 A ADS 292 ? S2P ? I ADS 1 S2P 4 1 N 1 A ADS 292 ? S3P ? I ADS 1 S3P 5 1 N 1 A ADS 292 ? "O2'" ? I ADS 1 "O2'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 265 ? A GLY 265 2 1 Y 1 A SER 266 ? A SER 266 3 1 Y 1 A GLU 267 ? A GLU 267 4 1 Y 1 A ILE 268 ? A ILE 268 5 1 Y 1 A ALA 269 ? A ALA 269 6 1 Y 1 A LYS 270 ? A LYS 270 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 ? NAG 281 n B 2 NAG 2 B NAG 2 ? NAG 282 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 'ZINC ION' ZN 5 "ADENOSINE-5'-(DITHIO)PHOSPHATE" ADS 6 "THYMIDINE-5'-(DITHIO)PHOSPHATE" THS 7 water HOH #