data_1AKH # _entry.id 1AKH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AKH pdb_00001akh 10.2210/pdb1akh/pdb RCSB PDR049 ? ? WWPDB D_1000170928 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AKH _pdbx_database_status.recvd_initial_deposition_date 1997-05-19 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, T.' 1 'Jin, Y.' 2 'Vershon, A.K.' 3 'Wolberger, C.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structure of the MATa1/MATalpha2 homeodomain heterodimer in complex with DNA containing an A-tract.' 'Nucleic Acids Res.' 26 5707 5718 1998 NARHAD UK 0305-1048 0389 ? 9838003 10.1093/nar/26.24.5707 1 'Crystallization and Preliminary X-Ray Diffraction Studies of an A1/Alpha 2/DNA Ternary Complex' Proteins 21 161 ? 1995 PSFGEY US 0887-3585 0867 ? ? ? 2 'Crystal Structure of the MATa1/MAT Alpha 2 Homeodomain Heterodimer Bound to DNA' Science 270 262 ? 1995 SCIEAS US 0036-8075 0038 ? ? ? 3 'Erratum. Crystal Structure of the MATa1/MAT Alpha 2 Homeodomain Heterodimer Bound to DNA' Science 270 1105 ? 1995 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, T.' 1 ? primary 'Jin, Y.' 2 ? primary 'Vershon, A.K.' 3 ? primary 'Wolberger, C.' 4 ? 1 'Li, T.' 5 ? 1 'Stark, M.' 6 ? 1 'Johnson, A.D.' 7 ? 1 'Wolberger, C.' 8 ? 2 'Li, T.' 9 ? 2 'Stark, M.R.' 10 ? 2 'Johnson, A.D.' 11 ? 2 'Wolberger, C.' 12 ? 3 'Li, T.' 13 ? 3 'Stark, M.R.' 14 ? 3 'Johnson, A.D.' 15 ? 3 'Wolberger, C.' 16 ? # _cell.entry_id 1AKH _cell.length_a 132.250 _cell.length_b 132.250 _cell.length_c 45.250 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AKH _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*C P*AP*TP*CP*A)-3') ; 6413.210 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*AP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*A P*CP*AP*TP*G)-3') ; 6466.217 1 ? ? ? ? 3 polymer man 'PROTEIN (MATING-TYPE PROTEIN A-1)' 7165.479 1 ? ? ? ? 4 polymer man 'PROTEIN (MATING-TYPE PROTEIN ALPHA-2)' 9773.306 1 ? ? ? ? 5 water nat water 18.015 51 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DT)(DA)(DC)(DA)(DT)(DG)(DT)(DA)(DA)(DA)(DA)(DA)(DT)(DT)(DT)(DA)(DC)(DA)(DT)(DC) (DA) ; TACATGTAAAAATTTACATCA C ? 2 polydeoxyribonucleotide no no ;(DT)(DA)(DT)(DG)(DA)(DT)(DG)(DT)(DA)(DA)(DA)(DT)(DT)(DT)(DT)(DT)(DA)(DC)(DA)(DT) (DG) ; TATGATGTAAATTTTTACATG D ? 3 'polypeptide(L)' no no KKEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK KKEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK A ? 4 'polypeptide(L)' no no ;TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTITIAPELADLLSGEPLAK KKE ; ;TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTITIAPELADLLSGEPLAK KKE ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DC n 1 4 DA n 1 5 DT n 1 6 DG n 1 7 DT n 1 8 DA n 1 9 DA n 1 10 DA n 1 11 DA n 1 12 DA n 1 13 DT n 1 14 DT n 1 15 DT n 1 16 DA n 1 17 DC n 1 18 DA n 1 19 DT n 1 20 DC n 1 21 DA n 2 1 DT n 2 2 DA n 2 3 DT n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DG n 2 8 DT n 2 9 DA n 2 10 DA n 2 11 DA n 2 12 DT n 2 13 DT n 2 14 DT n 2 15 DT n 2 16 DT n 2 17 DA n 2 18 DC n 2 19 DA n 2 20 DT n 2 21 DG n 3 1 LYS n 3 2 LYS n 3 3 GLU n 3 4 LYS n 3 5 SER n 3 6 PRO n 3 7 LYS n 3 8 GLY n 3 9 LYS n 3 10 SER n 3 11 SER n 3 12 ILE n 3 13 SER n 3 14 PRO n 3 15 GLN n 3 16 ALA n 3 17 ARG n 3 18 ALA n 3 19 PHE n 3 20 LEU n 3 21 GLU n 3 22 GLU n 3 23 VAL n 3 24 PHE n 3 25 ARG n 3 26 ARG n 3 27 LYS n 3 28 GLN n 3 29 SER n 3 30 LEU n 3 31 ASN n 3 32 SER n 3 33 LYS n 3 34 GLU n 3 35 LYS n 3 36 GLU n 3 37 GLU n 3 38 VAL n 3 39 ALA n 3 40 LYS n 3 41 LYS n 3 42 CYS n 3 43 GLY n 3 44 ILE n 3 45 THR n 3 46 PRO n 3 47 LEU n 3 48 GLN n 3 49 VAL n 3 50 ARG n 3 51 VAL n 3 52 TRP n 3 53 PHE n 3 54 ILE n 3 55 ASN n 3 56 LYS n 3 57 ARG n 3 58 MET n 3 59 ARG n 3 60 SER n 3 61 LYS n 4 1 THR n 4 2 LYS n 4 3 PRO n 4 4 TYR n 4 5 ARG n 4 6 GLY n 4 7 HIS n 4 8 ARG n 4 9 PHE n 4 10 THR n 4 11 LYS n 4 12 GLU n 4 13 ASN n 4 14 VAL n 4 15 ARG n 4 16 ILE n 4 17 LEU n 4 18 GLU n 4 19 SER n 4 20 TRP n 4 21 PHE n 4 22 ALA n 4 23 LYS n 4 24 ASN n 4 25 ILE n 4 26 GLU n 4 27 ASN n 4 28 PRO n 4 29 TYR n 4 30 LEU n 4 31 ASP n 4 32 THR n 4 33 LYS n 4 34 GLY n 4 35 LEU n 4 36 GLU n 4 37 ASN n 4 38 LEU n 4 39 MET n 4 40 LYS n 4 41 ASN n 4 42 THR n 4 43 SER n 4 44 LEU n 4 45 SER n 4 46 ARG n 4 47 ILE n 4 48 GLN n 4 49 ILE n 4 50 LYS n 4 51 ASN n 4 52 TRP n 4 53 VAL n 4 54 SER n 4 55 ASN n 4 56 ARG n 4 57 ARG n 4 58 ARG n 4 59 LYS n 4 60 GLU n 4 61 LYS n 4 62 THR n 4 63 ILE n 4 64 THR n 4 65 ILE n 4 66 ALA n 4 67 PRO n 4 68 GLU n 4 69 LEU n 4 70 ALA n 4 71 ASP n 4 72 LEU n 4 73 LEU n 4 74 SER n 4 75 GLY n 4 76 GLU n 4 77 PRO n 4 78 LEU n 4 79 ALA n 4 80 LYS n 4 81 LYS n 4 82 LYS n 4 83 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 3 1 sample ? ? ? ;baker's yeast ; Saccharomyces 'MAT A1 RESIDUES 66 - 126' ? ? ? ? ? ? 'Saccharomyces cerevisiae' 4932 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia 'MAT A1 RESIDUES 66 - 126' ? ? ? ? ? ? ? ? ? ? ? ? 'T7 PROMOTOR' ? ? ? PMS-K66 ? ? 4 1 sample ? ? ? ;baker's yeast ; Saccharomyces 'MAT ALPHA2 RESIDUES 128 - 210' ? ? ? ? ? ? 'Saccharomyces cerevisiae' 4932 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia 'MAT ALPHA2 RESIDUES 128 - 210' ? ? ? ? ? ? ? ? ? ? ? ? 'TAC PROMOTER' ? ? ? PAV105 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP MATA1_YEAST P01366 3 66 ? ? 2 UNP MTAL2_YEAST Q6B2C0 4 128 ? ? 3 PDB 1AKH 1AKH 1 ? ? ? 4 PDB 1AKH 1AKH 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AKH A 1 ? 61 ? P01366 66 ? 126 ? 66 126 2 2 1AKH B 1 ? 83 ? Q6B2C0 128 ? 210 ? 128 210 3 3 1AKH C 1 ? 21 ? 1AKH 1 ? 21 ? 1 21 4 4 1AKH D 1 ? 21 ? 1AKH 22 ? 42 ? 22 42 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1AKH _struct_ref_seq_dif.mon_id GLU _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 22 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P01366 _struct_ref_seq_dif.db_mon_id GLN _struct_ref_seq_dif.pdbx_seq_db_seq_num 87 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 87 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1AKH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.78 _exptl_crystal.density_percent_sol 67.6000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '100MM HEPES PH 7.0, 20MM CACL2, 5MM [CO(NH3)6]CL3., VAPOR DIFFUSION, HANGING DROP, temperature 295.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'HEPES BUFFER' ? ? ? 1 3 1 CACL2 ? ? ? 1 4 1 'COBALT HEXAMINE' ? ? ? 1 5 2 WATER ? ? ? 1 6 2 'HEPES BUFFER' ? ? ? 1 7 2 CACL2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 94.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 1995-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SILICON CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AKH _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.400 _reflns.number_obs 15656 _reflns.number_all ? _reflns.percent_possible_obs 83.600 _reflns.pdbx_Rmerge_I_obs 0.0540000 _reflns.pdbx_Rsym_value 7.4000000 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.000 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.400 _reflns_shell.d_res_low 2.480 _reflns_shell.percent_possible_all 67.00 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1AKH _refine.ls_number_reflns_obs 12913 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.000 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2010000 _refine.ls_R_factor_R_free 0.3020000 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 34.70 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1YRN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1AKH _refine_analyze.Luzzati_coordinate_error_obs 0.30 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 6.00 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1001 _refine_hist.pdbx_number_atoms_nucleic_acid 855 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 1907 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 6.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.87 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.58 _refine_ls_shell.number_reflns_R_work 935 _refine_ls_shell.R_factor_R_work 0.3240000 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3890000 _refine_ls_shell.R_factor_R_free_error 0.04 _refine_ls_shell.percent_reflns_R_free 10.00 _refine_ls_shell.number_reflns_R_free 1 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 RNA-DNA.PARM TOPH19.PEP 'X-RAY DIFFRACTION' 3 PARAM11.INT RNA-DNA.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1AKH _struct.title 'MAT A1/ALPHA2/DNA TERNARY COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AKH _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text ;COMPLEX (TWO DNA-BINDING PROTEINS-DNA), COMPLEX, DNA-BINDING PROTEIN, DNA, TRANSCRIPTION REGULATION, DNA BINDING PROTEIN-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 13 ? LYS C 27 ? SER A 78 LYS A 92 1 ? 15 HELX_P HELX_P2 2 ASN C 31 ? GLY C 43 ? ASN A 96 GLY A 108 1 ? 13 HELX_P HELX_P3 3 THR C 45 ? SER C 60 ? THR A 110 SER A 125 1 ? 16 HELX_P HELX_P4 4 THR D 10 ? ASN D 24 ? THR B 137 ASN B 151 1 ? 15 HELX_P HELX_P5 5 ASP D 31 ? ASN D 41 ? ASP B 158 ASN B 168 1 ? 11 HELX_P HELX_P6 6 SER D 45 ? ILE D 63 ? SER B 172 ILE B 190 1 ? 19 HELX_P HELX_P7 7 ALA D 66 ? GLY D 75 ? ALA B 193 GLY B 202 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 21 N1 ? ? C DC 3 D DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 21 O6 ? ? C DC 3 D DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 21 N2 ? ? C DC 3 D DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 20 N3 ? ? C DA 4 D DT 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 20 O4 ? ? C DA 4 D DT 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 19 N1 ? ? C DT 5 D DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 19 N6 ? ? C DT 5 D DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 18 N3 ? ? C DG 6 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 18 O2 ? ? C DG 6 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 18 N4 ? ? C DG 6 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 17 N1 ? ? C DT 7 D DA 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 17 N6 ? ? C DT 7 D DA 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 16 N3 ? ? C DA 8 D DT 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 16 O4 ? ? C DA 8 D DT 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 15 N3 ? ? C DA 9 D DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 15 O4 ? ? C DA 9 D DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 14 N3 ? ? C DA 10 D DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 14 O4 ? ? C DA 10 D DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 13 N3 ? ? C DA 11 D DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 13 O4 ? ? C DA 11 D DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 12 N3 ? ? C DA 12 D DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 12 O4 ? ? C DA 12 D DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 11 N1 ? ? C DT 13 D DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 11 N6 ? ? C DT 13 D DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 10 N1 ? ? C DT 14 D DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 10 N6 ? ? C DT 14 D DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 9 N1 ? ? C DT 15 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 9 N6 ? ? C DT 15 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 16 N1 ? ? ? 1_555 B DT 8 N3 ? ? C DA 16 D DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 16 N6 ? ? ? 1_555 B DT 8 O4 ? ? C DA 16 D DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 7 N1 ? ? C DC 17 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 7 O6 ? ? C DC 17 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 7 N2 ? ? C DC 17 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 18 N1 ? ? ? 1_555 B DT 6 N3 ? ? C DA 18 D DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 18 N6 ? ? ? 1_555 B DT 6 O4 ? ? C DA 18 D DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DT 19 N3 ? ? ? 1_555 B DA 5 N1 ? ? C DT 19 D DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 19 O4 ? ? ? 1_555 B DA 5 N6 ? ? C DT 19 D DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 20 N3 ? ? ? 1_555 B DG 4 N1 ? ? C DC 20 D DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 20 N4 ? ? ? 1_555 B DG 4 O6 ? ? C DC 20 D DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 20 O2 ? ? ? 1_555 B DG 4 N2 ? ? C DC 20 D DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DA 21 N1 ? ? ? 1_555 B DT 3 N3 ? ? C DA 21 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DA 21 N6 ? ? ? 1_555 B DT 3 O4 ? ? C DA 21 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1AKH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1AKH _atom_sites.fract_transf_matrix[1][1] 0.007561 _atom_sites.fract_transf_matrix[1][2] 0.004366 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008731 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022099 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T C . n A 1 2 DA 2 2 2 DA A C . n A 1 3 DC 3 3 3 DC C C . n A 1 4 DA 4 4 4 DA A C . n A 1 5 DT 5 5 5 DT T C . n A 1 6 DG 6 6 6 DG G C . n A 1 7 DT 7 7 7 DT T C . n A 1 8 DA 8 8 8 DA A C . n A 1 9 DA 9 9 9 DA A C . n A 1 10 DA 10 10 10 DA A C . n A 1 11 DA 11 11 11 DA A C . n A 1 12 DA 12 12 12 DA A C . n A 1 13 DT 13 13 13 DT T C . n A 1 14 DT 14 14 14 DT T C . n A 1 15 DT 15 15 15 DT T C . n A 1 16 DA 16 16 16 DA A C . n A 1 17 DC 17 17 17 DC C C . n A 1 18 DA 18 18 18 DA A C . n A 1 19 DT 19 19 19 DT T C . n A 1 20 DC 20 20 20 DC C C . n A 1 21 DA 21 21 21 DA A C . n B 2 1 DT 1 22 22 DT T D . n B 2 2 DA 2 23 23 DA A D . n B 2 3 DT 3 24 24 DT T D . n B 2 4 DG 4 25 25 DG G D . n B 2 5 DA 5 26 26 DA A D . n B 2 6 DT 6 27 27 DT T D . n B 2 7 DG 7 28 28 DG G D . n B 2 8 DT 8 29 29 DT T D . n B 2 9 DA 9 30 30 DA A D . n B 2 10 DA 10 31 31 DA A D . n B 2 11 DA 11 32 32 DA A D . n B 2 12 DT 12 33 33 DT T D . n B 2 13 DT 13 34 34 DT T D . n B 2 14 DT 14 35 35 DT T D . n B 2 15 DT 15 36 36 DT T D . n B 2 16 DT 16 37 37 DT T D . n B 2 17 DA 17 38 38 DA A D . n B 2 18 DC 18 39 39 DC C D . n B 2 19 DA 19 40 40 DA A D . n B 2 20 DT 20 41 41 DT T D . n B 2 21 DG 21 42 42 DG G D . n C 3 1 LYS 1 66 ? ? ? A . n C 3 2 LYS 2 67 ? ? ? A . n C 3 3 GLU 3 68 ? ? ? A . n C 3 4 LYS 4 69 ? ? ? A . n C 3 5 SER 5 70 ? ? ? A . n C 3 6 PRO 6 71 ? ? ? A . n C 3 7 LYS 7 72 ? ? ? A . n C 3 8 GLY 8 73 ? ? ? A . n C 3 9 LYS 9 74 ? ? ? A . n C 3 10 SER 10 75 ? ? ? A . n C 3 11 SER 11 76 ? ? ? A . n C 3 12 ILE 12 77 77 ILE ILE A . n C 3 13 SER 13 78 78 SER SER A . n C 3 14 PRO 14 79 79 PRO PRO A . n C 3 15 GLN 15 80 80 GLN GLN A . n C 3 16 ALA 16 81 81 ALA ALA A . n C 3 17 ARG 17 82 82 ARG ARG A . n C 3 18 ALA 18 83 83 ALA ALA A . n C 3 19 PHE 19 84 84 PHE PHE A . n C 3 20 LEU 20 85 85 LEU LEU A . n C 3 21 GLU 21 86 86 GLU GLU A . n C 3 22 GLU 22 87 87 GLU GLU A . n C 3 23 VAL 23 88 88 VAL VAL A . n C 3 24 PHE 24 89 89 PHE PHE A . n C 3 25 ARG 25 90 90 ARG ARG A . n C 3 26 ARG 26 91 91 ARG ARG A . n C 3 27 LYS 27 92 92 LYS LYS A . n C 3 28 GLN 28 93 93 GLN GLN A . n C 3 29 SER 29 94 94 SER SER A . n C 3 30 LEU 30 95 95 LEU LEU A . n C 3 31 ASN 31 96 96 ASN ASN A . n C 3 32 SER 32 97 97 SER SER A . n C 3 33 LYS 33 98 98 LYS LYS A . n C 3 34 GLU 34 99 99 GLU GLU A . n C 3 35 LYS 35 100 100 LYS LYS A . n C 3 36 GLU 36 101 101 GLU GLU A . n C 3 37 GLU 37 102 102 GLU GLU A . n C 3 38 VAL 38 103 103 VAL VAL A . n C 3 39 ALA 39 104 104 ALA ALA A . n C 3 40 LYS 40 105 105 LYS LYS A . n C 3 41 LYS 41 106 106 LYS LYS A . n C 3 42 CYS 42 107 107 CYS CYS A . n C 3 43 GLY 43 108 108 GLY GLY A . n C 3 44 ILE 44 109 109 ILE ILE A . n C 3 45 THR 45 110 110 THR THR A . n C 3 46 PRO 46 111 111 PRO PRO A . n C 3 47 LEU 47 112 112 LEU LEU A . n C 3 48 GLN 48 113 113 GLN GLN A . n C 3 49 VAL 49 114 114 VAL VAL A . n C 3 50 ARG 50 115 115 ARG ARG A . n C 3 51 VAL 51 116 116 VAL VAL A . n C 3 52 TRP 52 117 117 TRP TRP A . n C 3 53 PHE 53 118 118 PHE PHE A . n C 3 54 ILE 54 119 119 ILE ILE A . n C 3 55 ASN 55 120 120 ASN ASN A . n C 3 56 LYS 56 121 121 LYS LYS A . n C 3 57 ARG 57 122 122 ARG ARG A . n C 3 58 MET 58 123 123 MET MET A . n C 3 59 ARG 59 124 124 ARG ARG A . n C 3 60 SER 60 125 125 SER SER A . n C 3 61 LYS 61 126 ? ? ? A . n D 4 1 THR 1 128 128 THR THR B . n D 4 2 LYS 2 129 129 LYS LYS B . n D 4 3 PRO 3 130 130 PRO PRO B . n D 4 4 TYR 4 131 131 TYR TYR B . n D 4 5 ARG 5 132 132 ARG ARG B . n D 4 6 GLY 6 133 133 GLY GLY B . n D 4 7 HIS 7 134 134 HIS HIS B . n D 4 8 ARG 8 135 135 ARG ARG B . n D 4 9 PHE 9 136 136 PHE PHE B . n D 4 10 THR 10 137 137 THR THR B . n D 4 11 LYS 11 138 138 LYS LYS B . n D 4 12 GLU 12 139 139 GLU GLU B . n D 4 13 ASN 13 140 140 ASN ASN B . n D 4 14 VAL 14 141 141 VAL VAL B . n D 4 15 ARG 15 142 142 ARG ARG B . n D 4 16 ILE 16 143 143 ILE ILE B . n D 4 17 LEU 17 144 144 LEU LEU B . n D 4 18 GLU 18 145 145 GLU GLU B . n D 4 19 SER 19 146 146 SER SER B . n D 4 20 TRP 20 147 147 TRP TRP B . n D 4 21 PHE 21 148 148 PHE PHE B . n D 4 22 ALA 22 149 149 ALA ALA B . n D 4 23 LYS 23 150 150 LYS LYS B . n D 4 24 ASN 24 151 151 ASN ASN B . n D 4 25 ILE 25 152 152 ILE ILE B . n D 4 26 GLU 26 153 153 GLU GLU B . n D 4 27 ASN 27 154 154 ASN ASN B . n D 4 28 PRO 28 155 155 PRO PRO B . n D 4 29 TYR 29 156 156 TYR TYR B . n D 4 30 LEU 30 157 157 LEU LEU B . n D 4 31 ASP 31 158 158 ASP ASP B . n D 4 32 THR 32 159 159 THR THR B . n D 4 33 LYS 33 160 160 LYS LYS B . n D 4 34 GLY 34 161 161 GLY GLY B . n D 4 35 LEU 35 162 162 LEU LEU B . n D 4 36 GLU 36 163 163 GLU GLU B . n D 4 37 ASN 37 164 164 ASN ASN B . n D 4 38 LEU 38 165 165 LEU LEU B . n D 4 39 MET 39 166 166 MET MET B . n D 4 40 LYS 40 167 167 LYS LYS B . n D 4 41 ASN 41 168 168 ASN ASN B . n D 4 42 THR 42 169 169 THR THR B . n D 4 43 SER 43 170 170 SER SER B . n D 4 44 LEU 44 171 171 LEU LEU B . n D 4 45 SER 45 172 172 SER SER B . n D 4 46 ARG 46 173 173 ARG ARG B . n D 4 47 ILE 47 174 174 ILE ILE B . n D 4 48 GLN 48 175 175 GLN GLN B . n D 4 49 ILE 49 176 176 ILE ILE B . n D 4 50 LYS 50 177 177 LYS LYS B . n D 4 51 ASN 51 178 178 ASN ASN B . n D 4 52 TRP 52 179 179 TRP TRP B . n D 4 53 VAL 53 180 180 VAL VAL B . n D 4 54 SER 54 181 181 SER SER B . n D 4 55 ASN 55 182 182 ASN ASN B . n D 4 56 ARG 56 183 183 ARG ARG B . n D 4 57 ARG 57 184 184 ARG ARG B . n D 4 58 ARG 58 185 185 ARG ARG B . n D 4 59 LYS 59 186 186 LYS LYS B . n D 4 60 GLU 60 187 187 GLU GLU B . n D 4 61 LYS 61 188 188 LYS LYS B . n D 4 62 THR 62 189 189 THR THR B . n D 4 63 ILE 63 190 190 ILE ILE B . n D 4 64 THR 64 191 191 THR THR B . n D 4 65 ILE 65 192 192 ILE ILE B . n D 4 66 ALA 66 193 193 ALA ALA B . n D 4 67 PRO 67 194 194 PRO PRO B . n D 4 68 GLU 68 195 195 GLU GLU B . n D 4 69 LEU 69 196 196 LEU LEU B . n D 4 70 ALA 70 197 197 ALA ALA B . n D 4 71 ASP 71 198 198 ASP ASP B . n D 4 72 LEU 72 199 199 LEU LEU B . n D 4 73 LEU 73 200 200 LEU LEU B . n D 4 74 SER 74 201 201 SER SER B . n D 4 75 GLY 75 202 202 GLY GLY B . n D 4 76 GLU 76 203 203 GLU GLU B . n D 4 77 PRO 77 204 204 PRO PRO B . n D 4 78 LEU 78 205 205 LEU LEU B . n D 4 79 ALA 79 206 ? ? ? B . n D 4 80 LYS 80 207 ? ? ? B . n D 4 81 LYS 81 208 ? ? ? B . n D 4 82 LYS 82 209 ? ? ? B . n D 4 83 GLU 83 210 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HOH 1 600 600 HOH HOH C . E 5 HOH 2 602 602 HOH HOH C . E 5 HOH 3 603 603 HOH HOH C . E 5 HOH 4 606 606 HOH HOH C . E 5 HOH 5 608 608 HOH HOH C . E 5 HOH 6 610 610 HOH HOH C . E 5 HOH 7 615 615 HOH HOH C . E 5 HOH 8 617 617 HOH HOH C . E 5 HOH 9 625 625 HOH HOH C . E 5 HOH 10 631 631 HOH HOH C . E 5 HOH 11 632 632 HOH HOH C . E 5 HOH 12 634 634 HOH HOH C . E 5 HOH 13 635 635 HOH HOH C . E 5 HOH 14 636 636 HOH HOH C . E 5 HOH 15 643 643 HOH HOH C . E 5 HOH 16 650 650 HOH HOH C . F 5 HOH 1 609 609 HOH HOH D . F 5 HOH 2 612 612 HOH HOH D . F 5 HOH 3 613 613 HOH HOH D . F 5 HOH 4 614 614 HOH HOH D . F 5 HOH 5 616 616 HOH HOH D . F 5 HOH 6 619 619 HOH HOH D . F 5 HOH 7 621 621 HOH HOH D . F 5 HOH 8 622 622 HOH HOH D . F 5 HOH 9 630 630 HOH HOH D . F 5 HOH 10 637 637 HOH HOH D . F 5 HOH 11 638 638 HOH HOH D . F 5 HOH 12 644 644 HOH HOH D . F 5 HOH 13 645 645 HOH HOH D . F 5 HOH 14 646 646 HOH HOH D . F 5 HOH 15 647 647 HOH HOH D . G 5 HOH 1 629 629 HOH HOH A . G 5 HOH 2 639 639 HOH HOH A . G 5 HOH 3 640 640 HOH HOH A . G 5 HOH 4 641 641 HOH HOH A . G 5 HOH 5 642 642 HOH HOH A . G 5 HOH 6 648 648 HOH HOH A . H 5 HOH 1 601 601 HOH HOH B . H 5 HOH 2 604 604 HOH HOH B . H 5 HOH 3 605 605 HOH HOH B . H 5 HOH 4 607 607 HOH HOH B . H 5 HOH 5 611 611 HOH HOH B . H 5 HOH 6 618 618 HOH HOH B . H 5 HOH 7 620 620 HOH HOH B . H 5 HOH 8 623 623 HOH HOH B . H 5 HOH 9 624 624 HOH HOH B . H 5 HOH 10 626 626 HOH HOH B . H 5 HOH 11 627 627 HOH HOH B . H 5 HOH 12 628 628 HOH HOH B . H 5 HOH 13 633 633 HOH HOH B . H 5 HOH 14 649 649 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-05-20 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.0 ? 1 X-PLOR refinement 3.0 ? 2 R-AXIS 'data reduction' . ? 3 R-AXIS 'data scaling' . ? 4 X-PLOR phasing 3.0 ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 D _pdbx_validate_rmsd_angle.auth_comp_id_1 DT _pdbx_validate_rmsd_angle.auth_seq_id_1 24 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 D _pdbx_validate_rmsd_angle.auth_comp_id_2 DT _pdbx_validate_rmsd_angle.auth_seq_id_2 24 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP2 _pdbx_validate_rmsd_angle.auth_asym_id_3 D _pdbx_validate_rmsd_angle.auth_comp_id_3 DT _pdbx_validate_rmsd_angle.auth_seq_id_3 24 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 118.09 _pdbx_validate_rmsd_angle.angle_target_value 110.70 _pdbx_validate_rmsd_angle.angle_deviation 7.39 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR B 131 ? ? 177.14 169.35 2 1 PRO B 155 ? ? -62.48 43.88 3 1 THR B 169 ? ? -176.66 -27.01 4 1 PRO B 204 ? ? -8.62 89.07 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 87 ? CG ? C GLU 22 CG 2 1 Y 1 A GLU 87 ? CD ? C GLU 22 CD 3 1 Y 1 A GLU 87 ? OE1 ? C GLU 22 OE1 4 1 Y 1 A GLU 87 ? OE2 ? C GLU 22 OE2 5 1 Y 1 A ARG 90 ? CG ? C ARG 25 CG 6 1 Y 1 A ARG 90 ? CD ? C ARG 25 CD 7 1 Y 1 A ARG 90 ? NE ? C ARG 25 NE 8 1 Y 1 A ARG 90 ? CZ ? C ARG 25 CZ 9 1 Y 1 A ARG 90 ? NH1 ? C ARG 25 NH1 10 1 Y 1 A ARG 90 ? NH2 ? C ARG 25 NH2 11 1 Y 1 A GLU 101 ? CG ? C GLU 36 CG 12 1 Y 1 A GLU 101 ? CD ? C GLU 36 CD 13 1 Y 1 A GLU 101 ? OE1 ? C GLU 36 OE1 14 1 Y 1 A GLU 101 ? OE2 ? C GLU 36 OE2 15 1 Y 1 A SER 125 ? OG ? C SER 60 OG 16 1 Y 1 B GLU 139 ? CG ? D GLU 12 CG 17 1 Y 1 B GLU 139 ? CD ? D GLU 12 CD 18 1 Y 1 B GLU 139 ? OE1 ? D GLU 12 OE1 19 1 Y 1 B GLU 139 ? OE2 ? D GLU 12 OE2 20 1 Y 1 B LYS 150 ? CG ? D LYS 23 CG 21 1 Y 1 B LYS 150 ? CD ? D LYS 23 CD 22 1 Y 1 B LYS 150 ? CE ? D LYS 23 CE 23 1 Y 1 B LYS 150 ? NZ ? D LYS 23 NZ 24 1 Y 1 B GLU 153 ? CG ? D GLU 26 CG 25 1 Y 1 B GLU 153 ? CD ? D GLU 26 CD 26 1 Y 1 B GLU 153 ? OE1 ? D GLU 26 OE1 27 1 Y 1 B GLU 153 ? OE2 ? D GLU 26 OE2 28 1 Y 1 B LYS 160 ? CG ? D LYS 33 CG 29 1 Y 1 B LYS 160 ? CD ? D LYS 33 CD 30 1 Y 1 B LYS 160 ? CE ? D LYS 33 CE 31 1 Y 1 B LYS 160 ? NZ ? D LYS 33 NZ 32 1 Y 1 B GLU 163 ? CG ? D GLU 36 CG 33 1 Y 1 B GLU 163 ? CD ? D GLU 36 CD 34 1 Y 1 B GLU 163 ? OE1 ? D GLU 36 OE1 35 1 Y 1 B GLU 163 ? OE2 ? D GLU 36 OE2 36 1 Y 1 B ASN 164 ? CG ? D ASN 37 CG 37 1 Y 1 B ASN 164 ? OD1 ? D ASN 37 OD1 38 1 Y 1 B ASN 164 ? ND2 ? D ASN 37 ND2 39 1 Y 1 B LYS 167 ? CG ? D LYS 40 CG 40 1 Y 1 B LYS 167 ? CD ? D LYS 40 CD 41 1 Y 1 B LYS 167 ? CE ? D LYS 40 CE 42 1 Y 1 B LYS 167 ? NZ ? D LYS 40 NZ 43 1 Y 1 B ILE 190 ? CG1 ? D ILE 63 CG1 44 1 Y 1 B ILE 190 ? CG2 ? D ILE 63 CG2 45 1 Y 1 B ILE 190 ? CD1 ? D ILE 63 CD1 46 1 Y 1 B ASP 198 ? CG ? D ASP 71 CG 47 1 Y 1 B ASP 198 ? OD1 ? D ASP 71 OD1 48 1 Y 1 B ASP 198 ? OD2 ? D ASP 71 OD2 49 1 Y 1 B SER 201 ? OG ? D SER 74 OG 50 1 Y 1 B GLU 203 ? CG ? D GLU 76 CG 51 1 Y 1 B GLU 203 ? CD ? D GLU 76 CD 52 1 Y 1 B GLU 203 ? OE1 ? D GLU 76 OE1 53 1 Y 1 B GLU 203 ? OE2 ? D GLU 76 OE2 54 1 Y 1 B LEU 205 ? CG ? D LEU 78 CG 55 1 Y 1 B LEU 205 ? CD1 ? D LEU 78 CD1 56 1 Y 1 B LEU 205 ? CD2 ? D LEU 78 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 66 ? C LYS 1 2 1 Y 1 A LYS 67 ? C LYS 2 3 1 Y 1 A GLU 68 ? C GLU 3 4 1 Y 1 A LYS 69 ? C LYS 4 5 1 Y 1 A SER 70 ? C SER 5 6 1 Y 1 A PRO 71 ? C PRO 6 7 1 Y 1 A LYS 72 ? C LYS 7 8 1 Y 1 A GLY 73 ? C GLY 8 9 1 Y 1 A LYS 74 ? C LYS 9 10 1 Y 1 A SER 75 ? C SER 10 11 1 Y 1 A SER 76 ? C SER 11 12 1 Y 1 A LYS 126 ? C LYS 61 13 1 Y 1 B ALA 206 ? D ALA 79 14 1 Y 1 B LYS 207 ? D LYS 80 15 1 Y 1 B LYS 208 ? D LYS 81 16 1 Y 1 B LYS 209 ? D LYS 82 17 1 Y 1 B GLU 210 ? D GLU 83 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1AKH 'double helix' 1AKH 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 3 1_555 B DG 21 1_555 0.827 -0.095 0.281 -9.891 -9.893 2.528 1 C_DC3:DG42_D C 3 ? D 42 ? 19 1 1 A DA 4 1_555 B DT 20 1_555 0.907 -0.152 0.324 12.742 -9.389 -0.637 2 C_DA4:DT41_D C 4 ? D 41 ? 20 1 1 A DT 5 1_555 B DA 19 1_555 0.066 -0.326 -0.261 8.835 -7.058 4.006 3 C_DT5:DA40_D C 5 ? D 40 ? 20 1 1 A DG 6 1_555 B DC 18 1_555 0.128 -0.474 -0.370 -8.564 -7.158 0.749 4 C_DG6:DC39_D C 6 ? D 39 ? 19 1 1 A DT 7 1_555 B DA 17 1_555 0.006 -0.138 0.361 -8.615 -10.627 -0.170 5 C_DT7:DA38_D C 7 ? D 38 ? 20 1 1 A DA 8 1_555 B DT 16 1_555 0.652 -0.193 -0.433 -8.761 -5.498 -2.588 6 C_DA8:DT37_D C 8 ? D 37 ? 20 1 1 A DA 9 1_555 B DT 15 1_555 0.390 -0.115 -0.285 -5.870 -21.495 3.105 7 C_DA9:DT36_D C 9 ? D 36 ? 20 1 1 A DA 10 1_555 B DT 14 1_555 0.515 -0.134 -0.089 -6.359 -19.696 4.674 8 C_DA10:DT35_D C 10 ? D 35 ? 20 1 1 A DA 11 1_555 B DT 13 1_555 0.222 -0.423 0.058 4.503 -13.132 -1.876 9 C_DA11:DT34_D C 11 ? D 34 ? 20 1 1 A DA 12 1_555 B DT 12 1_555 0.493 -0.448 -0.336 -6.328 -18.465 -10.508 10 C_DA12:DT33_D C 12 ? D 33 ? 20 1 1 A DT 13 1_555 B DA 11 1_555 -0.178 -0.467 0.267 -5.066 -18.140 -3.937 11 C_DT13:DA32_D C 13 ? D 32 ? 20 1 1 A DT 14 1_555 B DA 10 1_555 -0.224 -0.107 0.099 -3.561 -15.994 1.076 12 C_DT14:DA31_D C 14 ? D 31 ? 20 1 1 A DT 15 1_555 B DA 9 1_555 0.922 -0.478 -0.226 -2.858 -14.741 -0.435 13 C_DT15:DA30_D C 15 ? D 30 ? 20 1 1 A DA 16 1_555 B DT 8 1_555 0.309 -0.269 -0.019 5.012 -12.052 -0.856 14 C_DA16:DT29_D C 16 ? D 29 ? 20 1 1 A DC 17 1_555 B DG 7 1_555 -0.426 -0.564 -0.058 -0.263 -10.902 0.666 15 C_DC17:DG28_D C 17 ? D 28 ? 19 1 1 A DA 18 1_555 B DT 6 1_555 -0.572 -0.525 0.373 4.402 -14.473 7.364 16 C_DA18:DT27_D C 18 ? D 27 ? 20 1 1 A DT 19 1_555 B DA 5 1_555 -0.317 -0.196 0.129 1.044 -14.490 5.578 17 C_DT19:DA26_D C 19 ? D 26 ? 20 1 1 A DC 20 1_555 B DG 4 1_555 0.031 -0.384 0.346 -4.992 -11.402 -6.204 18 C_DC20:DG25_D C 20 ? D 25 ? 19 1 1 A DA 21 1_555 B DT 3 1_555 0.837 -0.130 0.298 6.571 -4.639 -9.735 19 C_DA21:DT24_D C 21 ? D 24 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 3 1_555 B DG 21 1_555 A DA 4 1_555 B DT 20 1_555 -0.384 0.509 2.792 -0.824 5.952 35.250 0.084 0.523 2.845 9.740 1.348 35.742 1 CC_DC3DA4:DT41DG42_DD C 3 ? D 42 ? C 4 ? D 41 ? 1 A DA 4 1_555 B DT 20 1_555 A DT 5 1_555 B DA 19 1_555 0.645 -0.611 3.459 4.932 -0.117 26.567 -1.277 -0.031 3.521 -0.251 -10.616 27.013 2 CC_DA4DT5:DA40DT41_DD C 4 ? D 41 ? C 5 ? D 40 ? 1 A DT 5 1_555 B DA 19 1_555 A DG 6 1_555 B DC 18 1_555 -0.059 -0.792 3.508 -1.228 9.821 41.108 -2.156 -0.050 3.244 13.747 1.719 42.233 3 CC_DT5DG6:DC39DA40_DD C 5 ? D 40 ? C 6 ? D 39 ? 1 A DG 6 1_555 B DC 18 1_555 A DT 7 1_555 B DA 17 1_555 -0.166 -0.743 3.316 -3.085 2.624 28.415 -2.094 -0.364 3.235 5.310 6.243 28.697 4 CC_DG6DT7:DA38DC39_DD C 6 ? D 39 ? C 7 ? D 38 ? 1 A DT 7 1_555 B DA 17 1_555 A DA 8 1_555 B DT 16 1_555 -0.790 -0.553 3.272 2.013 7.035 39.052 -1.618 1.394 3.088 10.412 -2.979 39.705 5 CC_DT7DA8:DT37DA38_DD C 7 ? D 38 ? C 8 ? D 37 ? 1 A DA 8 1_555 B DT 16 1_555 A DA 9 1_555 B DT 15 1_555 0.225 0.376 3.234 -1.239 3.481 31.187 0.046 -0.647 3.244 6.447 2.294 31.399 6 CC_DA8DA9:DT36DT37_DD C 8 ? D 37 ? C 9 ? D 36 ? 1 A DA 9 1_555 B DT 15 1_555 A DA 10 1_555 B DT 14 1_555 -0.085 -0.132 3.302 0.397 1.845 32.379 -0.564 0.223 3.289 3.305 -0.711 32.433 7 CC_DA9DA10:DT35DT36_DD C 9 ? D 36 ? C 10 ? D 35 ? 1 A DA 10 1_555 B DT 14 1_555 A DA 11 1_555 B DT 13 1_555 0.107 -0.246 3.028 0.338 -3.785 31.265 0.204 -0.138 3.037 -6.990 -0.625 31.490 8 CC_DA10DA11:DT34DT35_DD C 10 ? D 35 ? C 11 ? D 34 ? 1 A DA 11 1_555 B DT 13 1_555 A DA 12 1_555 B DT 12 1_555 -0.857 0.051 3.498 0.846 -4.986 44.618 0.548 1.204 3.457 -6.542 -1.110 44.889 9 CC_DA11DA12:DT33DT34_DD C 11 ? D 34 ? C 12 ? D 33 ? 1 A DA 12 1_555 B DT 12 1_555 A DT 13 1_555 B DA 11 1_555 0.018 -0.968 3.139 -4.431 -5.333 31.489 -0.809 -0.809 3.223 -9.680 8.043 32.225 10 CC_DA12DT13:DA32DT33_DD C 12 ? D 33 ? C 13 ? D 32 ? 1 A DT 13 1_555 B DA 11 1_555 A DT 14 1_555 B DA 10 1_555 0.343 -0.472 3.205 2.347 -4.970 40.240 -0.132 -0.235 3.253 -7.183 -3.393 40.598 11 CC_DT13DT14:DA31DA32_DD C 13 ? D 32 ? C 14 ? D 31 ? 1 A DT 14 1_555 B DA 10 1_555 A DT 15 1_555 B DA 9 1_555 0.096 0.274 3.185 3.767 3.351 41.656 0.042 0.249 3.193 4.692 -5.273 41.947 12 CC_DT14DT15:DA30DA31_DD C 14 ? D 31 ? C 15 ? D 30 ? 1 A DT 15 1_555 B DA 9 1_555 A DA 16 1_555 B DT 8 1_555 0.026 1.241 3.165 -1.534 10.964 25.604 -0.167 -0.438 3.392 23.395 3.274 27.858 13 CC_DT15DA16:DT29DA30_DD C 15 ? D 30 ? C 16 ? D 29 ? 1 A DA 16 1_555 B DT 8 1_555 A DC 17 1_555 B DG 7 1_555 0.848 -1.097 3.314 2.007 8.119 26.522 -4.186 -1.295 2.911 17.161 -4.242 27.787 14 CC_DA16DC17:DG28DT29_DD C 16 ? D 29 ? C 17 ? D 28 ? 1 A DC 17 1_555 B DG 7 1_555 A DA 18 1_555 B DT 6 1_555 0.475 0.729 3.216 -1.687 10.065 34.817 -0.258 -1.004 3.268 16.389 2.747 36.237 15 CC_DC17DA18:DT27DG28_DD C 17 ? D 28 ? C 18 ? D 27 ? 1 A DA 18 1_555 B DT 6 1_555 A DT 19 1_555 B DA 5 1_555 0.561 -0.888 3.353 3.280 4.917 34.462 -2.232 -0.432 3.238 8.224 -5.485 34.950 16 CC_DA18DT19:DA26DT27_DD C 18 ? D 27 ? C 19 ? D 26 ? 1 A DT 19 1_555 B DA 5 1_555 A DC 20 1_555 B DG 4 1_555 -0.585 -0.644 3.414 -1.926 4.725 35.086 -1.776 0.669 3.329 7.786 3.174 35.444 17 CC_DT19DC20:DG25DA26_DD C 19 ? D 26 ? C 20 ? D 25 ? 1 A DC 20 1_555 B DG 4 1_555 A DA 21 1_555 B DT 3 1_555 -0.318 0.109 3.019 0.697 5.705 35.871 -0.563 0.600 2.994 9.189 -1.123 36.313 18 CC_DC20DA21:DT24DG25_DD C 20 ? D 25 ? C 21 ? D 24 ? # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1YRN _pdbx_initial_refinement_model.details 'PDB ENTRY 1YRN' #