data_1AXV # _entry.id 1AXV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AXV pdb_00001axv 10.2210/pdb1axv/pdb WWPDB D_1000171389 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AXV _pdbx_database_status.recvd_initial_deposition_date 1997-10-21 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mao, B.' 1 'Gu, Z.' 2 'Gorin, A.A.' 3 'Chen, J.' 4 'Hingerty, B.E.' 5 'Amid, S.' 6 'Broyde, S.' 7 'Geacintov, N.E.' 8 'Patel, D.J.' 9 # _citation.id primary _citation.title 'Solution structure of the (+)-cis-anti-benzo[a]pyrene-dA ([BP]dA) adduct opposite dT in a DNA duplex.' _citation.journal_abbrev Biochemistry _citation.journal_volume 38 _citation.page_first 10831 _citation.page_last 10842 _citation.year 1999 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10451380 _citation.pdbx_database_id_DOI 10.1021/bi991212f # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mao, B.' 1 ? primary 'Gu, Z.' 2 ? primary 'Gorin, A.' 3 ? primary 'Chen, J.' 4 ? primary 'Hingerty, B.E.' 5 ? primary 'Amin, S.' 6 ? primary 'Broyde, S.' 7 ? primary 'Geacintov, N.E.' 8 ? primary 'Patel, D.J.' 9 ? # _cell.entry_id 1AXV _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AXV _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA DUPLEX D(CTCTC-[BP]A-CTTCC)D(GGAAGTGAGAG)' 3220.111 1 ? ? ? 'C10 ATOM OF BP-ADDUCT LINKED TO N6 ATOM OF DA6' 2 polymer syn 'DNA DUPLEX D(CTCTC-[BP]A-CTTCC)D(GGAAGTGAGAG)' 3487.297 1 ? ? ? 'C10 ATOM OF BP-ADDUCT LINKED TO N6 ATOM OF DA6' 3 non-polymer syn '1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE' 304.339 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DT)(DC)(DT)(DC)(DA)(DC)(DT)(DT)(DC)(DC)' CTCTCACTTCC A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DA)(DG)(DT)(DG)(DA)(DG)(DA)(DG)' GGAAGTGAGAG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DC n 1 4 DT n 1 5 DC n 1 6 DA n 1 7 DC n 1 8 DT n 1 9 DT n 1 10 DC n 1 11 DC n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DA n 2 5 DG n 2 6 DT n 2 7 DG n 2 8 DA n 2 9 DG n 2 10 DA n 2 11 DG n # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1AXV 1AXV ? ? ? 2 2 PDB 1AXV 1AXV ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AXV A 1 ? 11 ? 1AXV 1 ? 11 ? 1 11 2 2 1AXV B 1 ? 11 ? 1AXV 12 ? 22 ? 12 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BAP non-polymer . '1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE' ? 'C20 H16 O3' 304.339 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 3 1 TOCSY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 322 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 'VARIAN UNITY PLUS' Varian 500 2 'VARIAN UNITY PLUS' Varian 600 # _pdbx_nmr_refine.entry_id 1AXV _pdbx_nmr_refine.method 'RELAXATION MATRIX REFINEMENT' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1AXV _pdbx_nmr_ensemble.conformers_calculated_total_number 6 _pdbx_nmr_ensemble.conformers_submitted_total_number 6 _pdbx_nmr_ensemble.conformer_selection_criteria 'ALL CONFORMERS PRESENTED' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' VNMR ? ? 2 'structure solution' DUPLEX ? ? 3 'structure solution' X-PLOR ? ? 4 # _exptl.entry_id 1AXV _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1AXV _struct.title 'SOLUTION NMR STRUCTURE OF THE [BP]DA ADDUCT OPPOSITE DT IN A DNA DUPLEX, 6 STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AXV _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA DUPLEX, BENZO[A]PYRENE ADDUCT, CARCINOGEN ADDUCT, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DA 6 N6 ? ? ? 1_555 C BAP . "C4'" ? ? A DA 6 A BAP 23 1_555 ? ? ? ? ? ? ? 1.489 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 2 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 2 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 3 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 3 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 3 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 4 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 4 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DG 5 O6 ? ? A DA 6 B DG 16 1_555 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 6 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 6 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 8 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 8 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 9 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 9 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BAP _struct_site.pdbx_auth_seq_id 23 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE BAP A 23' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DC A 5 ? DC A 5 . ? 1_555 ? 2 AC1 4 DA A 6 ? DA A 6 . ? 1_555 ? 3 AC1 4 DT B 6 ? DT B 17 . ? 1_555 ? 4 AC1 4 DG B 7 ? DG B 18 . ? 1_555 ? # _database_PDB_matrix.entry_id 1AXV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1AXV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DC 11 11 11 DC C A . n B 2 1 DG 1 12 12 DG G B . n B 2 2 DG 2 13 13 DG G B . n B 2 3 DA 3 14 14 DA A B . n B 2 4 DA 4 15 15 DA A B . n B 2 5 DG 5 16 16 DG G B . n B 2 6 DT 6 17 17 DT T B . n B 2 7 DG 7 18 18 DG G B . n B 2 8 DA 8 19 19 DA A B . n B 2 9 DG 9 20 20 DG G B . n B 2 10 DA 10 21 21 DA A B . n B 2 11 DG 11 22 22 DG G B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id BAP _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 23 _pdbx_nonpoly_scheme.auth_seq_num 23 _pdbx_nonpoly_scheme.pdb_mon_id BAP _pdbx_nonpoly_scheme.auth_mon_id BP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-07-01 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DT 2 ? ? C7 A DT 2 ? ? 1.540 1.496 0.044 0.006 N 2 1 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.535 1.496 0.039 0.006 N 3 1 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.541 1.496 0.045 0.006 N 4 1 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.540 1.496 0.044 0.006 N 5 1 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? 1.563 1.512 0.051 0.007 N 6 2 C5 A DT 2 ? ? C7 A DT 2 ? ? 1.536 1.496 0.040 0.006 N 7 2 "C5'" B DG 13 ? ? "C4'" B DG 13 ? ? 1.557 1.512 0.045 0.007 N 8 2 "C5'" B DA 14 ? ? "C4'" B DA 14 ? ? 1.558 1.512 0.046 0.007 N 9 3 C5 A DT 2 ? ? C7 A DT 2 ? ? 1.541 1.496 0.045 0.006 N 10 3 "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 1.576 1.512 0.064 0.007 N 11 3 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 1.457 1.516 -0.059 0.008 N 12 3 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.533 1.496 0.037 0.006 N 13 3 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? 1.571 1.512 0.059 0.007 N 14 4 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.544 1.496 0.048 0.006 N 15 4 "C5'" A DT 9 ? ? "C4'" A DT 9 ? ? 1.574 1.512 0.062 0.007 N 16 4 "C5'" B DA 14 ? ? "C4'" B DA 14 ? ? 1.554 1.512 0.042 0.007 N 17 5 C5 A DT 2 ? ? C7 A DT 2 ? ? 1.536 1.496 0.040 0.006 N 18 5 "C5'" A DT 9 ? ? "C4'" A DT 9 ? ? 1.561 1.512 0.049 0.007 N 19 5 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.535 1.496 0.039 0.006 N 20 5 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 1.463 1.516 -0.053 0.008 N 21 5 "C3'" B DA 14 ? ? "C2'" B DA 14 ? ? 1.462 1.516 -0.054 0.008 N 22 5 "C5'" B DA 15 ? ? "C4'" B DA 15 ? ? 1.567 1.512 0.055 0.007 N 23 5 "C2'" B DT 17 ? ? "C1'" B DT 17 ? ? 1.580 1.519 0.061 0.010 N 24 6 C5 A DT 2 ? ? C7 A DT 2 ? ? 1.537 1.496 0.041 0.006 N 25 6 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.541 1.496 0.045 0.006 N 26 6 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.541 1.496 0.045 0.006 N 27 6 P B DG 18 ? ? "O5'" B DG 18 ? ? 1.659 1.593 0.066 0.010 N 28 6 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? 1.576 1.512 0.064 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 100.62 105.90 -5.28 0.80 N 2 1 "C3'" A DT 2 ? ? "C2'" A DT 2 ? ? "C1'" A DT 2 ? ? 97.12 102.40 -5.28 0.80 N 3 1 "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? 96.98 102.20 -5.22 0.70 N 4 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.07 118.90 4.17 0.60 N 5 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 100.91 105.90 -4.99 0.80 N 6 1 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? 97.93 102.20 -4.27 0.70 N 7 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 99.69 105.90 -6.21 0.80 N 8 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.33 108.30 2.03 0.30 N 9 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 114.97 118.60 -3.63 0.60 N 10 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 128.57 123.70 4.87 0.80 N 11 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 98.74 105.90 -7.16 0.80 N 12 1 "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? 96.48 102.20 -5.72 0.70 N 13 1 N1 A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 123.01 114.30 8.71 1.40 N 14 1 C4 A DT 8 ? ? C5 A DT 8 ? ? C6 A DT 8 ? ? 122.05 118.00 4.05 0.60 N 15 1 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 118.31 122.30 -3.99 0.60 N 16 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 116.59 122.90 -6.31 0.60 N 17 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.17 122.90 -3.73 0.60 N 18 1 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 122.70 118.90 3.80 0.60 N 19 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 112.14 108.30 3.84 0.30 N 20 1 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? "C2'" B DA 15 ? ? 100.04 105.90 -5.86 0.80 N 21 1 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 102.19 110.10 -7.91 1.00 N 22 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.18 108.30 2.88 0.30 N 23 1 "O4'" B DT 17 ? ? "C4'" B DT 17 ? ? "C3'" B DT 17 ? ? 101.28 104.50 -3.22 0.40 N 24 1 "C4'" B DT 17 ? ? "C3'" B DT 17 ? ? "O3'" B DT 17 ? ? 124.66 112.30 12.36 2.00 N 25 1 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 118.42 122.90 -4.48 0.60 N 26 1 "C3'" B DT 17 ? ? "O3'" B DT 17 ? ? P B DG 18 ? ? 130.43 119.70 10.73 1.20 Y 27 1 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? "C3'" B DG 18 ? ? 128.80 115.70 13.10 1.20 N 28 1 "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? "C1'" B DG 18 ? ? 97.53 102.40 -4.87 0.80 N 29 1 "C3'" B DG 18 ? ? "O3'" B DG 18 ? ? P B DA 19 ? ? 127.62 119.70 7.92 1.20 Y 30 1 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 115.19 108.30 6.89 0.30 N 31 1 "C3'" B DA 19 ? ? "O3'" B DA 19 ? ? P B DG 20 ? ? 127.31 119.70 7.61 1.20 Y 32 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.58 108.30 2.28 0.30 N 33 2 "C5'" A DT 2 ? ? "C4'" A DT 2 ? ? "C3'" A DT 2 ? ? 123.07 115.70 7.37 1.20 N 34 2 N1 A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 123.28 114.30 8.98 1.40 N 35 2 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.05 118.90 4.15 0.60 N 36 2 "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? 101.69 104.50 -2.81 0.40 N 37 2 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DC 7 ? ? 130.14 119.70 10.44 1.20 Y 38 2 "C5'" A DC 7 ? ? "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? 123.02 115.70 7.32 1.20 N 39 2 "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 97.44 102.40 -4.96 0.80 N 40 2 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 103.21 108.00 -4.79 0.70 N 41 2 N1 A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 123.33 114.30 9.03 1.40 N 42 2 C4 A DT 8 ? ? C5 A DT 8 ? ? C6 A DT 8 ? ? 121.99 118.00 3.99 0.60 N 43 2 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.12 122.90 -5.78 0.60 N 44 2 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.65 108.30 4.35 0.30 N 45 2 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 117.85 122.90 -5.05 0.60 N 46 2 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 102.45 108.00 -5.55 0.70 N 47 2 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? "C2'" B DA 15 ? ? 99.33 105.90 -6.57 0.80 N 48 2 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 110.59 108.30 2.29 0.30 N 49 2 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? "C2'" B DT 17 ? ? 100.40 105.90 -5.50 0.80 N 50 2 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 110.61 108.30 2.31 0.30 N 51 2 "C3'" B DT 17 ? ? "O3'" B DT 17 ? ? P B DG 18 ? ? 129.37 119.70 9.67 1.20 Y 52 2 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? "C3'" B DG 18 ? ? 123.20 115.70 7.50 1.20 N 53 2 "C3'" B DG 18 ? ? "O3'" B DG 18 ? ? P B DA 19 ? ? 129.54 119.70 9.84 1.20 Y 54 2 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 110.97 108.30 2.67 0.30 N 55 2 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 110.33 108.30 2.03 0.30 N 56 2 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 110.37 108.30 2.07 0.30 N 57 3 "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? 97.01 102.20 -5.19 0.70 N 58 3 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 96.85 102.40 -5.55 0.80 N 59 3 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.60 108.30 2.30 0.30 N 60 3 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.90 118.90 4.00 0.60 N 61 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 103.75 108.00 -4.25 0.70 N 62 3 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? 97.67 102.20 -4.53 0.70 N 63 3 "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? 101.41 104.50 -3.09 0.40 N 64 3 "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? 123.68 115.70 7.98 1.20 N 65 3 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DC 7 ? ? 127.57 119.70 7.87 1.20 Y 66 3 "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? 97.87 102.20 -4.33 0.70 N 67 3 "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 97.22 102.40 -5.18 0.80 N 68 3 "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? 95.58 102.20 -6.62 0.70 N 69 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.77 108.30 2.47 0.30 N 70 3 C4 A DT 8 ? ? C5 A DT 8 ? ? C6 A DT 8 ? ? 122.13 118.00 4.13 0.60 N 71 3 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 116.81 122.90 -6.09 0.60 N 72 3 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 103.38 108.00 -4.62 0.70 N 73 3 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DG 13 ? ? 127.91 119.70 8.21 1.20 Y 74 3 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.93 108.30 2.63 0.30 N 75 3 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? "C2'" B DA 15 ? ? 98.63 105.90 -7.27 0.80 N 76 3 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 113.04 108.30 4.74 0.30 N 77 3 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.65 110.10 -6.45 1.00 N 78 3 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? "C2'" B DT 17 ? ? 100.62 105.90 -5.28 0.80 N 79 3 C4 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 124.18 119.00 5.18 0.60 N 80 3 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 116.06 122.90 -6.84 0.60 N 81 3 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? "C3'" B DG 18 ? ? 129.61 115.70 13.91 1.20 N 82 3 "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? "C1'" B DG 18 ? ? 97.55 102.40 -4.85 0.80 N 83 3 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 103.25 108.00 -4.75 0.70 N 84 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 103.49 108.00 -4.51 0.70 N 85 4 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.82 108.30 2.52 0.30 N 86 4 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? "O4'" A DT 4 ? ? 118.71 109.80 8.91 1.10 N 87 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 97.74 105.90 -8.16 0.80 N 88 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 99.50 105.90 -6.40 0.80 N 89 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 102.80 108.00 -5.20 0.70 N 90 4 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.83 118.90 3.93 0.60 N 91 4 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 97.18 105.90 -8.72 0.80 N 92 4 "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? 97.68 102.20 -4.52 0.70 N 93 4 "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? "C1'" A DT 8 ? ? 96.95 102.40 -5.45 0.80 N 94 4 C4 A DT 8 ? ? C5 A DT 8 ? ? C6 A DT 8 ? ? 122.15 118.00 4.15 0.60 N 95 4 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.42 122.90 -5.48 0.60 N 96 4 "C5'" A DT 9 ? ? "C4'" A DT 9 ? ? "C3'" A DT 9 ? ? 127.59 115.70 11.89 1.20 N 97 4 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.83 122.90 -4.07 0.60 N 98 4 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 111.85 108.30 3.55 0.30 N 99 4 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 111.47 108.30 3.17 0.30 N 100 4 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.15 108.30 1.85 0.30 N 101 4 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? "C2'" B DA 15 ? ? 100.75 105.90 -5.15 0.80 N 102 4 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.50 110.10 -6.60 1.00 N 103 4 "C4'" B DT 17 ? ? "C3'" B DT 17 ? ? "C2'" B DT 17 ? ? 95.23 102.20 -6.97 0.70 N 104 4 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? "C2'" B DT 17 ? ? 99.99 105.90 -5.91 0.80 N 105 4 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 118.10 122.90 -4.80 0.60 N 106 4 "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? "C1'" B DG 18 ? ? 97.22 102.40 -5.18 0.80 N 107 4 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 100.16 105.90 -5.74 0.80 N 108 4 N9 B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 125.28 114.30 10.98 1.40 N 109 4 C8 B DG 18 ? ? N9 B DG 18 ? ? "C1'" B DG 18 ? ? 135.34 127.00 8.34 1.30 N 110 4 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 111.03 108.30 2.73 0.30 N 111 4 "C3'" B DA 19 ? ? "O3'" B DA 19 ? ? P B DG 20 ? ? 127.43 119.70 7.73 1.20 Y 112 4 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 103.00 108.00 -5.00 0.70 N 113 4 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 110.61 108.30 2.31 0.30 N 114 5 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.92 118.90 4.02 0.60 N 115 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 101.03 105.90 -4.87 0.80 N 116 5 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? 97.40 102.20 -4.80 0.70 N 117 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 102.98 108.00 -5.02 0.70 N 118 5 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 122.21 118.60 3.61 0.60 N 119 5 "C5'" A DC 7 ? ? "C4'" A DC 7 ? ? "O4'" A DC 7 ? ? 117.50 109.80 7.70 1.10 N 120 5 "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 97.32 102.40 -5.08 0.80 N 121 5 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 97.93 105.90 -7.97 0.80 N 122 5 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 112.47 108.30 4.17 0.30 N 123 5 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 122.94 118.90 4.04 0.60 N 124 5 "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? "C1'" A DT 8 ? ? 97.11 102.40 -5.29 0.80 N 125 5 N1 A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 123.21 114.30 8.91 1.40 N 126 5 C4 A DT 8 ? ? C5 A DT 8 ? ? C6 A DT 8 ? ? 122.02 118.00 4.02 0.60 N 127 5 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 123.08 119.00 4.08 0.60 N 128 5 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 114.90 122.90 -8.00 0.60 N 129 5 "C5'" A DT 9 ? ? "C4'" A DT 9 ? ? "C3'" A DT 9 ? ? 123.77 115.70 8.07 1.20 N 130 5 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 122.95 118.90 4.05 0.60 N 131 5 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.66 108.30 2.36 0.30 N 132 5 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.27 108.30 1.97 0.30 N 133 5 "C5'" B DA 15 ? ? "C4'" B DA 15 ? ? "C3'" B DA 15 ? ? 125.68 115.70 9.98 1.20 N 134 5 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? "C2'" B DA 15 ? ? 99.69 105.90 -6.21 0.80 N 135 5 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DT 17 ? ? 127.73 119.70 8.03 1.20 Y 136 5 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? "C3'" B DG 18 ? ? 122.98 115.70 7.28 1.20 N 137 5 "C4'" B DA 19 ? ? "C3'" B DA 19 ? ? "C2'" B DA 19 ? ? 97.39 102.20 -4.81 0.70 N 138 5 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 112.49 108.30 4.19 0.30 N 139 5 "C3'" B DA 19 ? ? "O3'" B DA 19 ? ? P B DG 20 ? ? 129.88 119.70 10.18 1.20 Y 140 5 "C3'" B DG 20 ? ? "C2'" B DG 20 ? ? "C1'" B DG 20 ? ? 97.49 102.40 -4.91 0.80 N 141 5 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 112.57 108.30 4.27 0.30 N 142 6 "C5'" A DT 2 ? ? "C4'" A DT 2 ? ? "C3'" A DT 2 ? ? 123.39 115.70 7.69 1.20 N 143 6 "C3'" A DT 2 ? ? "C2'" A DT 2 ? ? "C1'" A DT 2 ? ? 97.29 102.40 -5.11 0.80 N 144 6 "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? 96.33 102.20 -5.87 0.70 N 145 6 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 97.48 102.40 -4.92 0.80 N 146 6 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.35 108.30 3.05 0.30 N 147 6 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.71 118.90 3.81 0.60 N 148 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 102.76 108.00 -5.24 0.70 N 149 6 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 101.50 108.00 -6.50 0.70 N 150 6 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 98.40 105.90 -7.50 0.80 N 151 6 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.38 108.30 2.08 0.30 N 152 6 C4 A DT 8 ? ? C5 A DT 8 ? ? C6 A DT 8 ? ? 122.12 118.00 4.12 0.60 N 153 6 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 115.83 122.90 -7.07 0.60 N 154 6 "C4'" A DT 9 ? ? "C3'" A DT 9 ? ? "C2'" A DT 9 ? ? 97.85 102.20 -4.35 0.70 N 155 6 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 114.57 108.30 6.27 0.30 N 156 6 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 122.63 118.90 3.73 0.60 N 157 6 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 97.87 102.20 -4.33 0.70 N 158 6 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 111.00 108.30 2.70 0.30 N 159 6 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? "C1'" B DG 13 ? ? 97.58 102.40 -4.82 0.80 N 160 6 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.30 108.30 2.00 0.30 N 161 6 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 103.51 108.00 -4.49 0.70 N 162 6 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? "C2'" B DA 15 ? ? 100.82 105.90 -5.08 0.80 N 163 6 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.12 110.10 -6.98 1.00 N 164 6 "C4'" B DT 17 ? ? "C3'" B DT 17 ? ? "C2'" B DT 17 ? ? 95.74 102.20 -6.46 0.70 N 165 6 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? "C2'" B DT 17 ? ? 98.32 105.90 -7.58 0.80 N 166 6 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? "C3'" B DG 18 ? ? 125.54 115.70 9.84 1.20 N 167 6 "C4'" B DG 18 ? ? "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? 97.86 102.20 -4.34 0.70 N 168 6 "C3'" B DG 18 ? ? "O3'" B DG 18 ? ? P B DA 19 ? ? 127.48 119.70 7.78 1.20 Y 169 6 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 110.79 108.30 2.49 0.30 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1AXV 'double helix' 1AXV 'b-form double helix' 1AXV 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.496 -0.155 -0.071 2.213 4.621 -0.746 1 A_DC1:DG22_B A 1 ? B 22 ? 19 1 1 A DT 2 1_555 B DA 10 1_555 -0.537 -0.186 -0.208 10.540 -5.913 1.810 2 A_DT2:DA21_B A 2 ? B 21 ? 20 1 1 A DC 3 1_555 B DG 9 1_555 1.218 -0.377 -0.201 10.413 0.313 -0.033 3 A_DC3:DG20_B A 3 ? B 20 ? 19 1 1 A DT 4 1_555 B DA 8 1_555 0.114 -0.058 -0.086 20.332 -11.949 9.136 4 A_DT4:DA19_B A 4 ? B 19 ? 20 1 1 A DC 5 1_555 B DG 7 1_555 0.907 -0.301 -0.450 35.021 -30.811 -2.270 5 A_DC5:DG18_B A 5 ? B 18 ? 19 1 1 A DA 6 1_555 B DT 6 1_555 0.420 -0.356 0.433 -44.563 28.241 25.534 6 A_DA6:DT17_B A 6 ? B 17 ? 20 1 1 A DC 7 1_555 B DG 5 1_555 0.945 -0.124 0.431 -21.884 -0.330 3.016 7 A_DC7:DG16_B A 7 ? B 16 ? 19 1 1 A DT 8 1_555 B DA 4 1_555 -0.140 -0.190 0.440 0.112 11.734 4.435 8 A_DT8:DA15_B A 8 ? B 15 ? 20 1 1 A DT 9 1_555 B DA 3 1_555 -0.699 0.039 -0.267 18.103 -15.505 -9.191 9 A_DT9:DA14_B A 9 ? B 14 ? 20 1 1 A DC 10 1_555 B DG 2 1_555 1.263 -0.592 0.207 14.941 -26.028 0.650 10 A_DC10:DG13_B A 10 ? B 13 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 0.768 -0.290 0.106 2.053 3.569 -1.194 11 A_DC11:DG12_B A 11 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DT 2 1_555 B DA 10 1_555 0.273 -0.967 2.913 -0.104 -0.166 34.364 -1.613 -0.477 2.916 -0.281 0.176 34.364 1 AA_DC1DT2:DA21DG22_BB A 1 ? B 22 ? A 2 ? B 21 ? 1 A DT 2 1_555 B DA 10 1_555 A DC 3 1_555 B DG 9 1_555 -0.070 -0.426 3.315 -0.438 10.797 41.246 -1.676 0.053 3.113 15.018 0.609 42.578 2 AA_DT2DC3:DG20DA21_BB A 2 ? B 21 ? A 3 ? B 20 ? 1 A DC 3 1_555 B DG 9 1_555 A DT 4 1_555 B DA 8 1_555 0.578 -0.964 2.760 0.900 9.738 32.498 -2.914 -0.875 2.395 16.928 -1.564 33.899 3 AA_DC3DT4:DA19DG20_BB A 3 ? B 20 ? A 4 ? B 19 ? 1 A DT 4 1_555 B DA 8 1_555 A DC 5 1_555 B DG 7 1_555 -1.172 0.268 2.843 5.938 10.903 33.767 -0.898 2.627 2.569 18.031 -9.820 35.914 4 AA_DT4DC5:DG18DA19_BB A 4 ? B 19 ? A 5 ? B 18 ? 1 A DA 6 1_555 B DT 6 1_555 A DC 7 1_555 B DG 5 1_555 -1.153 -0.559 2.963 8.506 15.836 30.370 -2.878 2.955 2.050 27.420 -14.728 35.184 5 AA_DA6DC7:DG16DT17_BB A 6 ? B 17 ? A 7 ? B 16 ? 1 A DC 7 1_555 B DG 5 1_555 A DT 8 1_555 B DA 4 1_555 -0.613 -0.670 2.711 -0.539 7.689 25.818 -3.018 1.205 2.425 16.740 1.174 26.925 6 AA_DC7DT8:DA15DG16_BB A 7 ? B 16 ? A 8 ? B 15 ? 1 A DT 8 1_555 B DA 4 1_555 A DT 9 1_555 B DA 3 1_555 -2.210 -0.375 2.671 5.902 -3.199 30.998 -0.238 4.874 2.249 -5.899 -10.884 31.699 7 AA_DT8DT9:DA14DA15_BB A 8 ? B 15 ? A 9 ? B 14 ? 1 A DT 9 1_555 B DA 3 1_555 A DC 10 1_555 B DG 2 1_555 1.677 -0.042 3.052 0.832 -1.309 47.328 0.047 -2.025 3.079 -1.630 -1.037 47.352 8 AA_DT9DC10:DG13DA14_BB A 9 ? B 14 ? A 10 ? B 13 ? 1 A DC 10 1_555 B DG 2 1_555 A DC 11 1_555 B DG 1 1_555 0.318 -0.875 3.620 3.711 5.932 37.572 -2.154 0.024 3.462 9.113 -5.701 38.195 9 AA_DC10DC11:DG12DG13_BB A 10 ? B 13 ? A 11 ? B 12 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name '1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE' _pdbx_entity_nonpoly.comp_id BAP #