data_1BPY # _entry.id 1BPY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BPY pdb_00001bpy 10.2210/pdb1bpy/pdb RCSB PDE0125 ? ? WWPDB D_1000171992 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1BPX . unspecified PDB 1BPZ . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BPY _pdbx_database_status.recvd_initial_deposition_date 1997-04-15 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sawaya, M.R.' 1 'Pelletier, H.' 2 'Prasad, R.' 3 'Wilson, S.H.' 4 'Kraut, J.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism.' Biochemistry 36 11205 11215 1997 BICHAW US 0006-2960 0033 ? 9287163 10.1021/bi9703812 1 'Characterization of the Metal Ion Binding Helix-Hairpin-Helix Motifs in Human DNA Polymerase Beta by X-Ray Structural Analysis' Biochemistry 35 12778 ? 1996 BICHAW US 0006-2960 0033 ? ? ? 2 'A Structural Basis for Metal Ion Mutagenicity and Nucleotide Selectivity in Human DNA Polymerase Beta' Biochemistry 35 12762 ? 1996 BICHAW US 0006-2960 0033 ? ? ? 3 ;Crystal Structures of Human DNA Polymerase Beta Complexed with DNA: Implications for Catalytic Mechanism, Processivity, and Fidelity ; Biochemistry 35 12742 ? 1996 BICHAW US 0006-2960 0033 ? ? ? 4 'Crystal Structure of Rat DNA Polymerase Beta: Evidence for a Common Polymerase Mechanism' Science 264 1930 ? 1994 SCIEAS US 0036-8075 0038 ? ? ? 5 'Structures of Ternary Complexes of Rat DNA Polymerase Beta, a DNA Template- Primer, and ddCTP' Science 264 1891 ? 1994 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sawaya, M.R.' 1 ? primary 'Prasad, R.' 2 ? primary 'Wilson, S.H.' 3 ? primary 'Kraut, J.' 4 ? primary 'Pelletier, H.' 5 ? 1 'Pelletier, H.' 6 ? 1 'Sawaya, M.R.' 7 ? 2 'Pelletier, H.' 8 ? 2 'Sawaya, M.R.' 9 ? 2 'Wolfle, W.' 10 ? 2 'Wilson, S.H.' 11 ? 2 'Kraut, J.' 12 ? 3 'Pelletier, H.' 13 ? 3 'Sawaya, M.R.' 14 ? 3 'Wolfle, W.' 15 ? 3 'Wilson, S.H.' 16 ? 3 'Kraut, J.' 17 ? 4 'Sawaya, M.R.' 18 ? 4 'Pelletier, H.' 19 ? 4 'Kumar, A.' 20 ? 4 'Wilson, S.H.' 21 ? 4 'Kraut, J.' 22 ? 5 'Pelletier, H.' 23 ? 5 'Sawaya, M.R.' 24 ? 5 'Kumar, A.' 25 ? 5 'Wilson, S.H.' 26 ? 5 'Kraut, J.' 27 ? # _cell.entry_id 1BPY _cell.length_a 50.543 _cell.length_b 79.817 _cell.length_c 54.942 _cell.angle_alpha 90.00 _cell.angle_beta 107.11 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1BPY _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') ; 4869.157 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*DOC)-3') ; 3045.005 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*TP*CP*GP*G)-3') ; 1536.035 1 ? ? ? ? 4 polymer man 'PROTEIN (DNA POLYMERASE BETA)' 38241.672 1 2.7.7.7 ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 6 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 7 non-polymer syn ;2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE ; 451.158 1 ? ? ? ? 8 water nat water 18.015 321 ? ? ? ? # _entity_name_com.entity_id 4 _entity_name_com.name 'POL BETA, BETA-POL' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DA)(DC)(DG)(DG)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC)' CCGACGGCGCATCAGC T ? 2 polydeoxyribonucleotide no yes '(DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DOC)' GCTGATGCGC P ? 3 polydeoxyribonucleotide no no '(DG)(DT)(DC)(DG)(DG)' GTCGG D ? 4 'polypeptide(L)' no no ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DC n 1 6 DG n 1 7 DG n 1 8 DC n 1 9 DG n 1 10 DC n 1 11 DA n 1 12 DT n 1 13 DC n 1 14 DA n 1 15 DG n 1 16 DC n 2 1 DG n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DG n 2 8 DC n 2 9 DG n 2 10 DOC n 3 1 DG n 3 2 DT n 3 3 DC n 3 4 DG n 3 5 DG n 4 1 MET n 4 2 SER n 4 3 LYS n 4 4 ARG n 4 5 LYS n 4 6 ALA n 4 7 PRO n 4 8 GLN n 4 9 GLU n 4 10 THR n 4 11 LEU n 4 12 ASN n 4 13 GLY n 4 14 GLY n 4 15 ILE n 4 16 THR n 4 17 ASP n 4 18 MET n 4 19 LEU n 4 20 THR n 4 21 GLU n 4 22 LEU n 4 23 ALA n 4 24 ASN n 4 25 PHE n 4 26 GLU n 4 27 LYS n 4 28 ASN n 4 29 VAL n 4 30 SER n 4 31 GLN n 4 32 ALA n 4 33 ILE n 4 34 HIS n 4 35 LYS n 4 36 TYR n 4 37 ASN n 4 38 ALA n 4 39 TYR n 4 40 ARG n 4 41 LYS n 4 42 ALA n 4 43 ALA n 4 44 SER n 4 45 VAL n 4 46 ILE n 4 47 ALA n 4 48 LYS n 4 49 TYR n 4 50 PRO n 4 51 HIS n 4 52 LYS n 4 53 ILE n 4 54 LYS n 4 55 SER n 4 56 GLY n 4 57 ALA n 4 58 GLU n 4 59 ALA n 4 60 LYS n 4 61 LYS n 4 62 LEU n 4 63 PRO n 4 64 GLY n 4 65 VAL n 4 66 GLY n 4 67 THR n 4 68 LYS n 4 69 ILE n 4 70 ALA n 4 71 GLU n 4 72 LYS n 4 73 ILE n 4 74 ASP n 4 75 GLU n 4 76 PHE n 4 77 LEU n 4 78 ALA n 4 79 THR n 4 80 GLY n 4 81 LYS n 4 82 LEU n 4 83 ARG n 4 84 LYS n 4 85 LEU n 4 86 GLU n 4 87 LYS n 4 88 ILE n 4 89 ARG n 4 90 GLN n 4 91 ASP n 4 92 ASP n 4 93 THR n 4 94 SER n 4 95 SER n 4 96 SER n 4 97 ILE n 4 98 ASN n 4 99 PHE n 4 100 LEU n 4 101 THR n 4 102 ARG n 4 103 VAL n 4 104 SER n 4 105 GLY n 4 106 ILE n 4 107 GLY n 4 108 PRO n 4 109 SER n 4 110 ALA n 4 111 ALA n 4 112 ARG n 4 113 LYS n 4 114 PHE n 4 115 VAL n 4 116 ASP n 4 117 GLU n 4 118 GLY n 4 119 ILE n 4 120 LYS n 4 121 THR n 4 122 LEU n 4 123 GLU n 4 124 ASP n 4 125 LEU n 4 126 ARG n 4 127 LYS n 4 128 ASN n 4 129 GLU n 4 130 ASP n 4 131 LYS n 4 132 LEU n 4 133 ASN n 4 134 HIS n 4 135 HIS n 4 136 GLN n 4 137 ARG n 4 138 ILE n 4 139 GLY n 4 140 LEU n 4 141 LYS n 4 142 TYR n 4 143 PHE n 4 144 GLY n 4 145 ASP n 4 146 PHE n 4 147 GLU n 4 148 LYS n 4 149 ARG n 4 150 ILE n 4 151 PRO n 4 152 ARG n 4 153 GLU n 4 154 GLU n 4 155 MET n 4 156 LEU n 4 157 GLN n 4 158 MET n 4 159 GLN n 4 160 ASP n 4 161 ILE n 4 162 VAL n 4 163 LEU n 4 164 ASN n 4 165 GLU n 4 166 VAL n 4 167 LYS n 4 168 LYS n 4 169 VAL n 4 170 ASP n 4 171 SER n 4 172 GLU n 4 173 TYR n 4 174 ILE n 4 175 ALA n 4 176 THR n 4 177 VAL n 4 178 CYS n 4 179 GLY n 4 180 SER n 4 181 PHE n 4 182 ARG n 4 183 ARG n 4 184 GLY n 4 185 ALA n 4 186 GLU n 4 187 SER n 4 188 SER n 4 189 GLY n 4 190 ASP n 4 191 MET n 4 192 ASP n 4 193 VAL n 4 194 LEU n 4 195 LEU n 4 196 THR n 4 197 HIS n 4 198 PRO n 4 199 SER n 4 200 PHE n 4 201 THR n 4 202 SER n 4 203 GLU n 4 204 SER n 4 205 THR n 4 206 LYS n 4 207 GLN n 4 208 PRO n 4 209 LYS n 4 210 LEU n 4 211 LEU n 4 212 HIS n 4 213 GLN n 4 214 VAL n 4 215 VAL n 4 216 GLU n 4 217 GLN n 4 218 LEU n 4 219 GLN n 4 220 LYS n 4 221 VAL n 4 222 HIS n 4 223 PHE n 4 224 ILE n 4 225 THR n 4 226 ASP n 4 227 THR n 4 228 LEU n 4 229 SER n 4 230 LYS n 4 231 GLY n 4 232 GLU n 4 233 THR n 4 234 LYS n 4 235 PHE n 4 236 MET n 4 237 GLY n 4 238 VAL n 4 239 CYS n 4 240 GLN n 4 241 LEU n 4 242 PRO n 4 243 SER n 4 244 LYS n 4 245 ASN n 4 246 ASP n 4 247 GLU n 4 248 LYS n 4 249 GLU n 4 250 TYR n 4 251 PRO n 4 252 HIS n 4 253 ARG n 4 254 ARG n 4 255 ILE n 4 256 ASP n 4 257 ILE n 4 258 ARG n 4 259 LEU n 4 260 ILE n 4 261 PRO n 4 262 LYS n 4 263 ASP n 4 264 GLN n 4 265 TYR n 4 266 TYR n 4 267 CYS n 4 268 GLY n 4 269 VAL n 4 270 LEU n 4 271 TYR n 4 272 PHE n 4 273 THR n 4 274 GLY n 4 275 SER n 4 276 ASP n 4 277 ILE n 4 278 PHE n 4 279 ASN n 4 280 LYS n 4 281 ASN n 4 282 MET n 4 283 ARG n 4 284 ALA n 4 285 HIS n 4 286 ALA n 4 287 LEU n 4 288 GLU n 4 289 LYS n 4 290 GLY n 4 291 PHE n 4 292 THR n 4 293 ILE n 4 294 ASN n 4 295 GLU n 4 296 TYR n 4 297 THR n 4 298 ILE n 4 299 ARG n 4 300 PRO n 4 301 LEU n 4 302 GLY n 4 303 VAL n 4 304 THR n 4 305 GLY n 4 306 VAL n 4 307 ALA n 4 308 GLY n 4 309 GLU n 4 310 PRO n 4 311 LEU n 4 312 PRO n 4 313 VAL n 4 314 ASP n 4 315 SER n 4 316 GLU n 4 317 LYS n 4 318 ASP n 4 319 ILE n 4 320 PHE n 4 321 ASP n 4 322 TYR n 4 323 ILE n 4 324 GLN n 4 325 TRP n 4 326 LYS n 4 327 TYR n 4 328 ARG n 4 329 GLU n 4 330 PRO n 4 331 LYS n 4 332 ASP n 4 333 ARG n 4 334 SER n 4 335 GLU n # _entity_src_gen.entity_id 4 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location NUCLEUS _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? 3 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP DPOB_HUMAN P06746 4 1 ? ? 2 PDB 1BPY 1BPY 1 ? ? ? 3 PDB 1BPY 1BPY 2 ? ? ? 4 PDB 1BPY 1BPY 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BPY A 2 ? 335 ? P06746 1 ? 334 ? 2 335 2 2 1BPY T 1 ? 16 ? 1BPY 1 ? 16 ? 1 16 3 3 1BPY P 1 ? 10 ? 1BPY 1 ? 10 ? 1 10 4 4 1BPY D 1 ? 5 ? 1BPY 1 ? 5 ? 1 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DCT 'DNA linking' n ;2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE ; ? 'C9 H16 N3 O12 P3' 451.158 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DOC 'DNA linking' n "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O6 P' 291.198 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1BPY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_percent_sol 41.4000 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;PROTEIN-DNA COMPLEX WAS CRYSTALLIZED USING A RESERVOIR CONTAINING 16.0% PEG 3350, 180 MM SODIUM ACETATE, AND 50 MM HEPES, PH 7.5., VAPOR DIFFUSION ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-04-02 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111) CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1BPY _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F 0.000 _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.200 _reflns.number_obs 21036 _reflns.number_all ? _reflns.percent_possible_obs 95.000 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.086 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.600 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.200 _reflns_shell.d_res_low 2.280 _reflns_shell.percent_possible_all 84.80 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.18 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1BPY _refine.ls_number_reflns_obs 21036 _refine.ls_number_reflns_all 21036 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.000 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs 95.400 _refine.ls_R_factor_obs 0.227 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.232 _refine.ls_R_factor_R_free 0.33 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.00 _refine.ls_number_reflns_R_free 2079 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MOEWS _refine.solvent_model_param_ksol 0.907 _refine.solvent_model_param_bsol 23.80 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 9ICW' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'TNT PROTGEO' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2614 _refine_hist.pdbx_number_atoms_nucleic_acid 631 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 321 _refine_hist.number_atoms_total 3597 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.020 ? 0.390 3407 'X-RAY DIFFRACTION' ? t_angle_deg 3.000 ? 0.970 4709 'X-RAY DIFFRACTION' ? t_dihedral_angle_d 22.10 ? 1.000 1995 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct 0 ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes 0.015 ? 1.000 73 'X-RAY DIFFRACTION' ? t_gen_planes 0.006 ? 10.00 414 'X-RAY DIFFRACTION' ? t_it 6.500 ? 0.015 3407 'X-RAY DIFFRACTION' ? t_nbd 0.016 ? 10.00 171 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1BPY _pdbx_refine.R_factor_all_no_cutoff 0.227 _pdbx_refine.R_factor_obs_no_cutoff 0.232 _pdbx_refine.free_R_factor_no_cutoff 0.33 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 10.00 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 2079.0 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1BPY _struct.title 'HUMAN DNA POLYMERASE BETA COMPLEXED WITH GAPPED DNA AND DDCTP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BPY _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'NUCLEOTIDYLTRANSFERASE, DNA REPAIR, BASE EXCISION REPAIR PATHWAY, TRANSFERASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 7 ? J N N 8 ? K N N 8 ? L N N 8 ? M N N 8 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 A GLY D 13 ? SER D 30 ? GLY A 13 SER A 30 1 ? 18 HELX_P HELX_P2 B ILE D 33 ? LYS D 48 ? ILE A 33 LYS A 48 1 ? 16 HELX_P HELX_P3 C GLY D 56 ? LYS D 61 ? GLY A 56 LYS A 61 1 ? 6 HELX_P HELX_P4 D THR D 67 ? THR D 79 ? THR A 67 THR A 79 1 'SEE REMARK 650' 13 HELX_P HELX_P5 E ARG D 83 ? GLN D 90 ? ARG A 83 GLN A 90 1 ? 8 HELX_P HELX_P6 F ASP D 92 ? ARG D 102 ? ASP A 92 ARG A 102 1 ? 11 HELX_P HELX_P7 G PRO D 108 ? ASP D 116 ? PRO A 108 ASP A 116 1 'SEE REMARK 650' 9 HELX_P HELX_P8 H LEU D 122 ? LYS D 127 ? LEU A 122 LYS A 127 1 ? 6 HELX_P HELX_P9 I HIS D 134 ? GLU D 147 ? HIS A 134 GLU A 147 1 ? 14 HELX_P HELX_P10 J ARG D 152 ? VAL D 169 ? ARG A 152 VAL A 169 1 ? 18 HELX_P HELX_P11 K SER D 180 ? ARG D 183 ? SER A 180 ARG A 183 1 ? 4 HELX_P HELX_P12 L PRO D 208 ? LYS D 220 ? PRO A 208 LYS A 220 1 ? 13 HELX_P HELX_P13 M LYS D 262 ? THR D 273 ? LYS A 262 THR A 273 1 ? 12 HELX_P HELX_P14 N ASP D 276 ? GLU D 288 ? ASP A 276 GLU A 288 1 ? 13 HELX_P HELX_P15 O GLU D 316 ? ILE D 323 ? GLU A 316 ILE A 323 1 ? 8 HELX_P HELX_P16 P PRO D 330 ? ASP D 332 ? PRO A 330 ASP A 332 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 9 "O3'" ? ? ? 1_555 B DOC 10 P ? ? P DG 9 P DOC 10 1_555 ? ? ? ? ? ? ? 1.569 ? ? metalc1 metalc ? ? B DG 9 OP1 ? ? ? 1_555 G NA . NA ? ? P DG 9 A NA 341 1_555 ? ? ? ? ? ? ? 2.855 ? ? metalc2 metalc ? ? K HOH . O ? ? ? 1_555 G NA . NA ? ? P HOH 766 A NA 341 1_555 ? ? ? ? ? ? ? 3.017 ? ? metalc3 metalc ? ? C DC 3 OP1 ? ? ? 1_555 H NA . NA ? ? D DC 3 A NA 342 1_555 ? ? ? ? ? ? ? 2.412 ? ? metalc4 metalc ? ? L HOH . O ? ? ? 1_555 H NA . NA ? ? D HOH 587 A NA 342 1_555 ? ? ? ? ? ? ? 2.956 ? ? metalc5 metalc ? ? L HOH . O ? ? ? 1_555 H NA . NA ? ? D HOH 588 A NA 342 1_555 ? ? ? ? ? ? ? 2.922 ? ? metalc6 metalc ? ? D LYS 60 O ? ? ? 1_555 H NA . NA ? ? A LYS 60 A NA 342 1_555 ? ? ? ? ? ? ? 2.469 ? ? metalc7 metalc ? ? D LEU 62 O ? ? ? 1_555 H NA . NA ? ? A LEU 62 A NA 342 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc8 metalc ? ? D VAL 65 O ? ? ? 1_555 H NA . NA ? ? A VAL 65 A NA 342 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc9 metalc ? ? D THR 101 O ? ? ? 1_555 G NA . NA ? ? A THR 101 A NA 341 1_555 ? ? ? ? ? ? ? 2.315 ? ? metalc10 metalc ? ? D VAL 103 O ? ? ? 1_555 G NA . NA ? ? A VAL 103 A NA 341 1_555 ? ? ? ? ? ? ? 2.865 ? ? metalc11 metalc ? ? D ILE 106 O ? ? ? 1_555 G NA . NA ? ? A ILE 106 A NA 341 1_555 ? ? ? ? ? ? ? 2.293 ? ? metalc12 metalc ? ? D ASP 190 OD1 ? ? ? 1_555 E MG . MG ? ? A ASP 190 A MG 339 1_555 ? ? ? ? ? ? ? 1.961 ? ? metalc13 metalc ? ? D ASP 190 OD2 ? ? ? 1_555 F MG . MG ? ? A ASP 190 A MG 340 1_555 ? ? ? ? ? ? ? 2.221 ? ? metalc14 metalc ? ? D ASP 190 OD1 ? ? ? 1_555 F MG . MG ? ? A ASP 190 A MG 340 1_555 ? ? ? ? ? ? ? 2.680 ? ? metalc15 metalc ? ? D ASP 192 OD2 ? ? ? 1_555 E MG . MG ? ? A ASP 192 A MG 339 1_555 ? ? ? ? ? ? ? 1.974 ? ? metalc16 metalc ? ? D ASP 192 OD1 ? ? ? 1_555 F MG . MG ? ? A ASP 192 A MG 340 1_555 ? ? ? ? ? ? ? 2.202 ? ? metalc17 metalc ? ? D ASP 256 OD2 ? ? ? 1_555 F MG . MG ? ? A ASP 256 A MG 340 1_555 ? ? ? ? ? ? ? 2.628 ? ? metalc18 metalc ? ? I DCT . O1A ? ? ? 1_555 E MG . MG ? ? A DCT 338 A MG 339 1_555 ? ? ? ? ? ? ? 1.939 ? ? metalc19 metalc ? ? I DCT . O1G ? ? ? 1_555 E MG . MG ? ? A DCT 338 A MG 339 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc20 metalc ? ? I DCT . O2B ? ? ? 1_555 E MG . MG ? ? A DCT 338 A MG 339 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc21 metalc ? ? I DCT . O1A ? ? ? 1_555 F MG . MG ? ? A DCT 338 A MG 340 1_555 ? ? ? ? ? ? ? 2.366 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 339 A HOH 530 1_555 ? ? ? ? ? ? ? 1.975 ? ? metalc23 metalc ? ? G NA . NA ? ? ? 1_555 M HOH . O ? ? A NA 341 A HOH 617 1_555 ? ? ? ? ? ? ? 3.012 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 C DG 5 N1 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 C DG 5 O6 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 C DG 5 N2 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 C DG 4 N1 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 C DG 4 O6 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 C DG 4 N2 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 C DC 3 N3 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 C DT 2 N3 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 C DT 2 O4 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 C DG 1 N1 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 C DG 1 O6 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 C DG 1 N2 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DOC 10 N3 ? ? T DG 7 P DOC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DOC 10 O2 ? ? T DG 7 P DOC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DOC 10 N4 ? ? T DG 7 P DOC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 9 N1 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 9 O6 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 9 N2 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 8 N3 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 8 O2 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 8 N4 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 7 N1 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 7 O6 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 7 N2 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 6 N3 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 6 O4 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 5 N1 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 5 N6 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 4 N1 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 4 O6 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 4 N2 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 3 N3 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 3 O4 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 2 N3 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 2 O2 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 2 N4 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 1 N1 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 1 O6 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 1 N2 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 274 _struct_mon_prot_cis.label_asym_id D _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 274 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 275 _struct_mon_prot_cis.pdbx_label_asym_id_2 D _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 275 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.30 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1 ? 2 ? S2 ? 5 ? S3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense S1 1 2 ? anti-parallel S2 1 2 ? anti-parallel S2 2 3 ? parallel S2 3 4 ? anti-parallel S2 4 5 ? anti-parallel S3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1 1 ILE D 150 ? PRO D 151 ? ILE A 150 PRO A 151 S1 2 SER D 187 ? SER D 188 ? SER A 187 SER A 188 S2 1 ILE D 174 ? CYS D 178 ? ILE A 174 CYS A 178 S2 2 MET D 191 ? THR D 196 ? MET A 191 THR A 196 S2 3 ARG D 253 ? ARG D 258 ? ARG A 253 ARG A 258 S2 4 LYS D 234 ? CYS D 239 ? LYS A 234 CYS A 239 S2 5 SER D 229 ? GLY D 231 ? SER A 229 GLY A 231 S3 1 PHE D 291 ? ASN D 294 ? PHE A 291 ASN A 294 S3 2 THR D 297 ? PRO D 300 ? THR A 297 PRO A 300 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id S1 1 2 O ILE D 150 ? O ILE A 150 N SER D 188 ? N SER A 188 S2 1 2 O ILE D 174 ? O ILE A 174 N THR D 196 ? N THR A 196 S2 2 3 O MET D 191 ? O MET A 191 N ASP D 256 ? N ASP A 256 S2 3 4 O ARG D 253 ? O ARG A 253 N CYS D 239 ? N CYS A 239 S2 4 5 N MET D 236 ? N MET A 236 O SER D 229 ? O SER A 229 S3 1 2 O THR D 292 ? O THR A 292 N ARG D 299 ? N ARG A 299 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details ACT Unknown ? ? ? ? 5 ? AC1 Software A MG 339 ? 5 'BINDING SITE FOR RESIDUE MG A 339' AC2 Software A MG 340 ? 6 'BINDING SITE FOR RESIDUE MG A 340' AC3 Software A NA 341 ? 6 'BINDING SITE FOR RESIDUE NA A 341' AC4 Software A NA 342 ? 6 'BINDING SITE FOR RESIDUE NA A 342' AC5 Software A DCT 338 ? 23 'BINDING SITE FOR RESIDUE DCT A 338' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 ACT 5 ASP D 190 ? ASP A 190 . ? 1_555 ? 2 ACT 5 ASP D 192 ? ASP A 192 . ? 1_555 ? 3 ACT 5 ASP D 256 ? ASP A 256 . ? 1_555 ? 4 ACT 5 MG E . ? MG A 339 . ? 1_555 ? 5 ACT 5 MG F . ? MG A 340 . ? 1_555 ? 6 AC1 5 ASP D 190 ? ASP A 190 . ? 1_555 ? 7 AC1 5 ASP D 192 ? ASP A 192 . ? 1_555 ? 8 AC1 5 DCT I . ? DCT A 338 . ? 1_555 ? 9 AC1 5 MG F . ? MG A 340 . ? 1_555 ? 10 AC1 5 HOH M . ? HOH A 530 . ? 1_555 ? 11 AC2 6 ASP D 190 ? ASP A 190 . ? 1_555 ? 12 AC2 6 ASP D 192 ? ASP A 192 . ? 1_555 ? 13 AC2 6 ASP D 256 ? ASP A 256 . ? 1_555 ? 14 AC2 6 DCT I . ? DCT A 338 . ? 1_555 ? 15 AC2 6 MG E . ? MG A 339 . ? 1_555 ? 16 AC2 6 DOC B 10 ? DOC P 10 . ? 1_555 ? 17 AC3 6 THR D 101 ? THR A 101 . ? 1_555 ? 18 AC3 6 VAL D 103 ? VAL A 103 . ? 1_555 ? 19 AC3 6 ILE D 106 ? ILE A 106 . ? 1_555 ? 20 AC3 6 HOH M . ? HOH A 617 . ? 1_555 ? 21 AC3 6 DG B 9 ? DG P 9 . ? 1_555 ? 22 AC3 6 HOH K . ? HOH P 766 . ? 1_555 ? 23 AC4 6 LYS D 60 ? LYS A 60 . ? 1_555 ? 24 AC4 6 LEU D 62 ? LEU A 62 . ? 1_555 ? 25 AC4 6 VAL D 65 ? VAL A 65 . ? 1_555 ? 26 AC4 6 DC C 3 ? DC D 3 . ? 1_555 ? 27 AC4 6 HOH L . ? HOH D 587 . ? 1_555 ? 28 AC4 6 HOH L . ? HOH D 588 . ? 1_555 ? 29 AC5 23 GLY D 179 ? GLY A 179 . ? 1_555 ? 30 AC5 23 SER D 180 ? SER A 180 . ? 1_555 ? 31 AC5 23 ARG D 183 ? ARG A 183 . ? 1_555 ? 32 AC5 23 SER D 188 ? SER A 188 . ? 1_555 ? 33 AC5 23 GLY D 189 ? GLY A 189 . ? 1_555 ? 34 AC5 23 ASP D 190 ? ASP A 190 . ? 1_555 ? 35 AC5 23 ASP D 192 ? ASP A 192 . ? 1_555 ? 36 AC5 23 TYR D 271 ? TYR A 271 . ? 1_555 ? 37 AC5 23 PHE D 272 ? PHE A 272 . ? 1_555 ? 38 AC5 23 GLY D 274 ? GLY A 274 . ? 1_555 ? 39 AC5 23 ASP D 276 ? ASP A 276 . ? 1_555 ? 40 AC5 23 MG E . ? MG A 339 . ? 1_555 ? 41 AC5 23 MG F . ? MG A 340 . ? 1_555 ? 42 AC5 23 HOH M . ? HOH A 509 . ? 1_555 ? 43 AC5 23 HOH M . ? HOH A 530 . ? 1_555 ? 44 AC5 23 HOH M . ? HOH A 545 . ? 1_555 ? 45 AC5 23 HOH M . ? HOH A 546 . ? 1_555 ? 46 AC5 23 HOH M . ? HOH A 609 . ? 1_555 ? 47 AC5 23 HOH M . ? HOH A 636 . ? 1_555 ? 48 AC5 23 HOH M . ? HOH A 645 . ? 1_555 ? 49 AC5 23 HOH M . ? HOH A 648 . ? 1_555 ? 50 AC5 23 DOC B 10 ? DOC P 10 . ? 1_555 ? 51 AC5 23 DG A 6 ? DG T 6 . ? 1_555 ? # _database_PDB_matrix.entry_id 1BPY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1BPY _atom_sites.fract_transf_matrix[1][1] 0.019785 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006090 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012529 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019044 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C T . n A 1 2 DC 2 2 2 DC C T . n A 1 3 DG 3 3 3 DG G T . n A 1 4 DA 4 4 4 DA A T . n A 1 5 DC 5 5 5 DC C T . n A 1 6 DG 6 6 6 DG G T . n A 1 7 DG 7 7 7 DG G T . n A 1 8 DC 8 8 8 DC C T . n A 1 9 DG 9 9 9 DG G T . n A 1 10 DC 10 10 10 DC C T . n A 1 11 DA 11 11 11 DA A T . n A 1 12 DT 12 12 12 DT T T . n A 1 13 DC 13 13 13 DC C T . n A 1 14 DA 14 14 14 DA A T . n A 1 15 DG 15 15 15 DG G T . n A 1 16 DC 16 16 16 DC C T . n B 2 1 DG 1 1 1 DG G P . n B 2 2 DC 2 2 2 DC C P . n B 2 3 DT 3 3 3 DT T P . n B 2 4 DG 4 4 4 DG G P . n B 2 5 DA 5 5 5 DA A P . n B 2 6 DT 6 6 6 DT T P . n B 2 7 DG 7 7 7 DG G P . n B 2 8 DC 8 8 8 DC C P . n B 2 9 DG 9 9 9 DG G P . n B 2 10 DOC 10 10 10 DOC DOC P . n C 3 1 DG 1 1 1 DG G D . n C 3 2 DT 2 2 2 DT T D . n C 3 3 DC 3 3 3 DC C D . n C 3 4 DG 4 4 4 DG G D . n C 3 5 DG 5 5 5 DG G D . n D 4 1 MET 1 1 ? ? ? A . n D 4 2 SER 2 2 ? ? ? A . n D 4 3 LYS 3 3 ? ? ? A . n D 4 4 ARG 4 4 ? ? ? A . n D 4 5 LYS 5 5 ? ? ? A . n D 4 6 ALA 6 6 ? ? ? A . n D 4 7 PRO 7 7 ? ? ? A . n D 4 8 GLN 8 8 ? ? ? A . n D 4 9 GLU 9 9 ? ? ? A . n D 4 10 THR 10 10 10 THR THR A . n D 4 11 LEU 11 11 11 LEU LEU A . n D 4 12 ASN 12 12 12 ASN ASN A . n D 4 13 GLY 13 13 13 GLY GLY A . n D 4 14 GLY 14 14 14 GLY GLY A . n D 4 15 ILE 15 15 15 ILE ILE A . n D 4 16 THR 16 16 16 THR THR A . n D 4 17 ASP 17 17 17 ASP ASP A . n D 4 18 MET 18 18 18 MET MET A . n D 4 19 LEU 19 19 19 LEU LEU A . n D 4 20 THR 20 20 20 THR THR A . n D 4 21 GLU 21 21 21 GLU GLU A . n D 4 22 LEU 22 22 22 LEU LEU A . n D 4 23 ALA 23 23 23 ALA ALA A . n D 4 24 ASN 24 24 24 ASN ASN A . n D 4 25 PHE 25 25 25 PHE PHE A . n D 4 26 GLU 26 26 26 GLU GLU A . n D 4 27 LYS 27 27 27 LYS LYS A . n D 4 28 ASN 28 28 28 ASN ASN A . n D 4 29 VAL 29 29 29 VAL VAL A . n D 4 30 SER 30 30 30 SER SER A . n D 4 31 GLN 31 31 31 GLN GLN A . n D 4 32 ALA 32 32 32 ALA ALA A . n D 4 33 ILE 33 33 33 ILE ILE A . n D 4 34 HIS 34 34 34 HIS HIS A . n D 4 35 LYS 35 35 35 LYS LYS A . n D 4 36 TYR 36 36 36 TYR TYR A . n D 4 37 ASN 37 37 37 ASN ASN A . n D 4 38 ALA 38 38 38 ALA ALA A . n D 4 39 TYR 39 39 39 TYR TYR A . n D 4 40 ARG 40 40 40 ARG ARG A . n D 4 41 LYS 41 41 41 LYS LYS A . n D 4 42 ALA 42 42 42 ALA ALA A . n D 4 43 ALA 43 43 43 ALA ALA A . n D 4 44 SER 44 44 44 SER SER A . n D 4 45 VAL 45 45 45 VAL VAL A . n D 4 46 ILE 46 46 46 ILE ILE A . n D 4 47 ALA 47 47 47 ALA ALA A . n D 4 48 LYS 48 48 48 LYS LYS A . n D 4 49 TYR 49 49 49 TYR TYR A . n D 4 50 PRO 50 50 50 PRO PRO A . n D 4 51 HIS 51 51 51 HIS HIS A . n D 4 52 LYS 52 52 52 LYS LYS A . n D 4 53 ILE 53 53 53 ILE ILE A . n D 4 54 LYS 54 54 54 LYS LYS A . n D 4 55 SER 55 55 55 SER SER A . n D 4 56 GLY 56 56 56 GLY GLY A . n D 4 57 ALA 57 57 57 ALA ALA A . n D 4 58 GLU 58 58 58 GLU GLU A . n D 4 59 ALA 59 59 59 ALA ALA A . n D 4 60 LYS 60 60 60 LYS LYS A . n D 4 61 LYS 61 61 61 LYS LYS A . n D 4 62 LEU 62 62 62 LEU LEU A . n D 4 63 PRO 63 63 63 PRO PRO A . n D 4 64 GLY 64 64 64 GLY GLY A . n D 4 65 VAL 65 65 65 VAL VAL A . n D 4 66 GLY 66 66 66 GLY GLY A . n D 4 67 THR 67 67 67 THR THR A . n D 4 68 LYS 68 68 68 LYS LYS A . n D 4 69 ILE 69 69 69 ILE ILE A . n D 4 70 ALA 70 70 70 ALA ALA A . n D 4 71 GLU 71 71 71 GLU GLU A . n D 4 72 LYS 72 72 72 LYS LYS A . n D 4 73 ILE 73 73 73 ILE ILE A . n D 4 74 ASP 74 74 74 ASP ASP A . n D 4 75 GLU 75 75 75 GLU GLU A . n D 4 76 PHE 76 76 76 PHE PHE A . n D 4 77 LEU 77 77 77 LEU LEU A . n D 4 78 ALA 78 78 78 ALA ALA A . n D 4 79 THR 79 79 79 THR THR A . n D 4 80 GLY 80 80 80 GLY GLY A . n D 4 81 LYS 81 81 81 LYS LYS A . n D 4 82 LEU 82 82 82 LEU LEU A . n D 4 83 ARG 83 83 83 ARG ARG A . n D 4 84 LYS 84 84 84 LYS LYS A . n D 4 85 LEU 85 85 85 LEU LEU A . n D 4 86 GLU 86 86 86 GLU GLU A . n D 4 87 LYS 87 87 87 LYS LYS A . n D 4 88 ILE 88 88 88 ILE ILE A . n D 4 89 ARG 89 89 89 ARG ARG A . n D 4 90 GLN 90 90 90 GLN GLN A . n D 4 91 ASP 91 91 91 ASP ASP A . n D 4 92 ASP 92 92 92 ASP ASP A . n D 4 93 THR 93 93 93 THR THR A . n D 4 94 SER 94 94 94 SER SER A . n D 4 95 SER 95 95 95 SER SER A . n D 4 96 SER 96 96 96 SER SER A . n D 4 97 ILE 97 97 97 ILE ILE A . n D 4 98 ASN 98 98 98 ASN ASN A . n D 4 99 PHE 99 99 99 PHE PHE A . n D 4 100 LEU 100 100 100 LEU LEU A . n D 4 101 THR 101 101 101 THR THR A . n D 4 102 ARG 102 102 102 ARG ARG A . n D 4 103 VAL 103 103 103 VAL VAL A . n D 4 104 SER 104 104 104 SER SER A . n D 4 105 GLY 105 105 105 GLY GLY A . n D 4 106 ILE 106 106 106 ILE ILE A . n D 4 107 GLY 107 107 107 GLY GLY A . n D 4 108 PRO 108 108 108 PRO PRO A . n D 4 109 SER 109 109 109 SER SER A . n D 4 110 ALA 110 110 110 ALA ALA A . n D 4 111 ALA 111 111 111 ALA ALA A . n D 4 112 ARG 112 112 112 ARG ARG A . n D 4 113 LYS 113 113 113 LYS LYS A . n D 4 114 PHE 114 114 114 PHE PHE A . n D 4 115 VAL 115 115 115 VAL VAL A . n D 4 116 ASP 116 116 116 ASP ASP A . n D 4 117 GLU 117 117 117 GLU GLU A . n D 4 118 GLY 118 118 118 GLY GLY A . n D 4 119 ILE 119 119 119 ILE ILE A . n D 4 120 LYS 120 120 120 LYS LYS A . n D 4 121 THR 121 121 121 THR THR A . n D 4 122 LEU 122 122 122 LEU LEU A . n D 4 123 GLU 123 123 123 GLU GLU A . n D 4 124 ASP 124 124 124 ASP ASP A . n D 4 125 LEU 125 125 125 LEU LEU A . n D 4 126 ARG 126 126 126 ARG ARG A . n D 4 127 LYS 127 127 127 LYS LYS A . n D 4 128 ASN 128 128 128 ASN ASN A . n D 4 129 GLU 129 129 129 GLU GLU A . n D 4 130 ASP 130 130 130 ASP ASP A . n D 4 131 LYS 131 131 131 LYS LYS A . n D 4 132 LEU 132 132 132 LEU LEU A . n D 4 133 ASN 133 133 133 ASN ASN A . n D 4 134 HIS 134 134 134 HIS HIS A . n D 4 135 HIS 135 135 135 HIS HIS A . n D 4 136 GLN 136 136 136 GLN GLN A . n D 4 137 ARG 137 137 137 ARG ARG A . n D 4 138 ILE 138 138 138 ILE ILE A . n D 4 139 GLY 139 139 139 GLY GLY A . n D 4 140 LEU 140 140 140 LEU LEU A . n D 4 141 LYS 141 141 141 LYS LYS A . n D 4 142 TYR 142 142 142 TYR TYR A . n D 4 143 PHE 143 143 143 PHE PHE A . n D 4 144 GLY 144 144 144 GLY GLY A . n D 4 145 ASP 145 145 145 ASP ASP A . n D 4 146 PHE 146 146 146 PHE PHE A . n D 4 147 GLU 147 147 147 GLU GLU A . n D 4 148 LYS 148 148 148 LYS LYS A . n D 4 149 ARG 149 149 149 ARG ARG A . n D 4 150 ILE 150 150 150 ILE ILE A . n D 4 151 PRO 151 151 151 PRO PRO A . n D 4 152 ARG 152 152 152 ARG ARG A . n D 4 153 GLU 153 153 153 GLU GLU A . n D 4 154 GLU 154 154 154 GLU GLU A . n D 4 155 MET 155 155 155 MET MET A . n D 4 156 LEU 156 156 156 LEU LEU A . n D 4 157 GLN 157 157 157 GLN GLN A . n D 4 158 MET 158 158 158 MET MET A . n D 4 159 GLN 159 159 159 GLN GLN A . n D 4 160 ASP 160 160 160 ASP ASP A . n D 4 161 ILE 161 161 161 ILE ILE A . n D 4 162 VAL 162 162 162 VAL VAL A . n D 4 163 LEU 163 163 163 LEU LEU A . n D 4 164 ASN 164 164 164 ASN ASN A . n D 4 165 GLU 165 165 165 GLU GLU A . n D 4 166 VAL 166 166 166 VAL VAL A . n D 4 167 LYS 167 167 167 LYS LYS A . n D 4 168 LYS 168 168 168 LYS LYS A . n D 4 169 VAL 169 169 169 VAL VAL A . n D 4 170 ASP 170 170 170 ASP ASP A . n D 4 171 SER 171 171 171 SER SER A . n D 4 172 GLU 172 172 172 GLU GLU A . n D 4 173 TYR 173 173 173 TYR TYR A . n D 4 174 ILE 174 174 174 ILE ILE A . n D 4 175 ALA 175 175 175 ALA ALA A . n D 4 176 THR 176 176 176 THR THR A . n D 4 177 VAL 177 177 177 VAL VAL A . n D 4 178 CYS 178 178 178 CYS CYS A . n D 4 179 GLY 179 179 179 GLY GLY A . n D 4 180 SER 180 180 180 SER SER A . n D 4 181 PHE 181 181 181 PHE PHE A . n D 4 182 ARG 182 182 182 ARG ARG A . n D 4 183 ARG 183 183 183 ARG ARG A . n D 4 184 GLY 184 184 184 GLY GLY A . n D 4 185 ALA 185 185 185 ALA ALA A . n D 4 186 GLU 186 186 186 GLU GLU A . n D 4 187 SER 187 187 187 SER SER A . n D 4 188 SER 188 188 188 SER SER A . n D 4 189 GLY 189 189 189 GLY GLY A . n D 4 190 ASP 190 190 190 ASP ASP A . n D 4 191 MET 191 191 191 MET MET A . n D 4 192 ASP 192 192 192 ASP ASP A . n D 4 193 VAL 193 193 193 VAL VAL A . n D 4 194 LEU 194 194 194 LEU LEU A . n D 4 195 LEU 195 195 195 LEU LEU A . n D 4 196 THR 196 196 196 THR THR A . n D 4 197 HIS 197 197 197 HIS HIS A . n D 4 198 PRO 198 198 198 PRO PRO A . n D 4 199 SER 199 199 199 SER SER A . n D 4 200 PHE 200 200 200 PHE PHE A . n D 4 201 THR 201 201 201 THR THR A . n D 4 202 SER 202 202 202 SER SER A . n D 4 203 GLU 203 203 203 GLU GLU A . n D 4 204 SER 204 204 204 SER SER A . n D 4 205 THR 205 205 205 THR THR A . n D 4 206 LYS 206 206 206 LYS LYS A . n D 4 207 GLN 207 207 207 GLN GLN A . n D 4 208 PRO 208 208 208 PRO PRO A . n D 4 209 LYS 209 209 209 LYS LYS A . n D 4 210 LEU 210 210 210 LEU LEU A . n D 4 211 LEU 211 211 211 LEU LEU A . n D 4 212 HIS 212 212 212 HIS HIS A . n D 4 213 GLN 213 213 213 GLN GLN A . n D 4 214 VAL 214 214 214 VAL VAL A . n D 4 215 VAL 215 215 215 VAL VAL A . n D 4 216 GLU 216 216 216 GLU GLU A . n D 4 217 GLN 217 217 217 GLN GLN A . n D 4 218 LEU 218 218 218 LEU LEU A . n D 4 219 GLN 219 219 219 GLN GLN A . n D 4 220 LYS 220 220 220 LYS LYS A . n D 4 221 VAL 221 221 221 VAL VAL A . n D 4 222 HIS 222 222 222 HIS HIS A . n D 4 223 PHE 223 223 223 PHE PHE A . n D 4 224 ILE 224 224 224 ILE ILE A . n D 4 225 THR 225 225 225 THR THR A . n D 4 226 ASP 226 226 226 ASP ASP A . n D 4 227 THR 227 227 227 THR THR A . n D 4 228 LEU 228 228 228 LEU LEU A . n D 4 229 SER 229 229 229 SER SER A . n D 4 230 LYS 230 230 230 LYS LYS A . n D 4 231 GLY 231 231 231 GLY GLY A . n D 4 232 GLU 232 232 232 GLU GLU A . n D 4 233 THR 233 233 233 THR THR A . n D 4 234 LYS 234 234 234 LYS LYS A . n D 4 235 PHE 235 235 235 PHE PHE A . n D 4 236 MET 236 236 236 MET MET A . n D 4 237 GLY 237 237 237 GLY GLY A . n D 4 238 VAL 238 238 238 VAL VAL A . n D 4 239 CYS 239 239 239 CYS CYS A . n D 4 240 GLN 240 240 240 GLN GLN A . n D 4 241 LEU 241 241 241 LEU LEU A . n D 4 242 PRO 242 242 242 PRO PRO A . n D 4 243 SER 243 243 243 SER SER A . n D 4 244 LYS 244 244 244 LYS LYS A . n D 4 245 ASN 245 245 245 ASN ASN A . n D 4 246 ASP 246 246 246 ASP ASP A . n D 4 247 GLU 247 247 247 GLU GLU A . n D 4 248 LYS 248 248 248 LYS LYS A . n D 4 249 GLU 249 249 249 GLU GLU A . n D 4 250 TYR 250 250 250 TYR TYR A . n D 4 251 PRO 251 251 251 PRO PRO A . n D 4 252 HIS 252 252 252 HIS HIS A . n D 4 253 ARG 253 253 253 ARG ARG A . n D 4 254 ARG 254 254 254 ARG ARG A . n D 4 255 ILE 255 255 255 ILE ILE A . n D 4 256 ASP 256 256 256 ASP ASP A . n D 4 257 ILE 257 257 257 ILE ILE A . n D 4 258 ARG 258 258 258 ARG ARG A . n D 4 259 LEU 259 259 259 LEU LEU A . n D 4 260 ILE 260 260 260 ILE ILE A . n D 4 261 PRO 261 261 261 PRO PRO A . n D 4 262 LYS 262 262 262 LYS LYS A . n D 4 263 ASP 263 263 263 ASP ASP A . n D 4 264 GLN 264 264 264 GLN GLN A . n D 4 265 TYR 265 265 265 TYR TYR A . n D 4 266 TYR 266 266 266 TYR TYR A . n D 4 267 CYS 267 267 267 CYS CYS A . n D 4 268 GLY 268 268 268 GLY GLY A . n D 4 269 VAL 269 269 269 VAL VAL A . n D 4 270 LEU 270 270 270 LEU LEU A . n D 4 271 TYR 271 271 271 TYR TYR A . n D 4 272 PHE 272 272 272 PHE PHE A . n D 4 273 THR 273 273 273 THR THR A . n D 4 274 GLY 274 274 274 GLY GLY A . n D 4 275 SER 275 275 275 SER SER A . n D 4 276 ASP 276 276 276 ASP ASP A . n D 4 277 ILE 277 277 277 ILE ILE A . n D 4 278 PHE 278 278 278 PHE PHE A . n D 4 279 ASN 279 279 279 ASN ASN A . n D 4 280 LYS 280 280 280 LYS LYS A . n D 4 281 ASN 281 281 281 ASN ASN A . n D 4 282 MET 282 282 282 MET MET A . n D 4 283 ARG 283 283 283 ARG ARG A . n D 4 284 ALA 284 284 284 ALA ALA A . n D 4 285 HIS 285 285 285 HIS HIS A . n D 4 286 ALA 286 286 286 ALA ALA A . n D 4 287 LEU 287 287 287 LEU LEU A . n D 4 288 GLU 288 288 288 GLU GLU A . n D 4 289 LYS 289 289 289 LYS LYS A . n D 4 290 GLY 290 290 290 GLY GLY A . n D 4 291 PHE 291 291 291 PHE PHE A . n D 4 292 THR 292 292 292 THR THR A . n D 4 293 ILE 293 293 293 ILE ILE A . n D 4 294 ASN 294 294 294 ASN ASN A . n D 4 295 GLU 295 295 295 GLU GLU A . n D 4 296 TYR 296 296 296 TYR TYR A . n D 4 297 THR 297 297 297 THR THR A . n D 4 298 ILE 298 298 298 ILE ILE A . n D 4 299 ARG 299 299 299 ARG ARG A . n D 4 300 PRO 300 300 300 PRO PRO A . n D 4 301 LEU 301 301 301 LEU LEU A . n D 4 302 GLY 302 302 302 GLY GLY A . n D 4 303 VAL 303 303 303 VAL VAL A . n D 4 304 THR 304 304 304 THR THR A . n D 4 305 GLY 305 305 305 GLY GLY A . n D 4 306 VAL 306 306 306 VAL VAL A . n D 4 307 ALA 307 307 307 ALA ALA A . n D 4 308 GLY 308 308 308 GLY GLY A . n D 4 309 GLU 309 309 309 GLU GLU A . n D 4 310 PRO 310 310 310 PRO PRO A . n D 4 311 LEU 311 311 311 LEU LEU A . n D 4 312 PRO 312 312 312 PRO PRO A . n D 4 313 VAL 313 313 313 VAL VAL A . n D 4 314 ASP 314 314 314 ASP ASP A . n D 4 315 SER 315 315 315 SER SER A . n D 4 316 GLU 316 316 316 GLU GLU A . n D 4 317 LYS 317 317 317 LYS LYS A . n D 4 318 ASP 318 318 318 ASP ASP A . n D 4 319 ILE 319 319 319 ILE ILE A . n D 4 320 PHE 320 320 320 PHE PHE A . n D 4 321 ASP 321 321 321 ASP ASP A . n D 4 322 TYR 322 322 322 TYR TYR A . n D 4 323 ILE 323 323 323 ILE ILE A . n D 4 324 GLN 324 324 324 GLN GLN A . n D 4 325 TRP 325 325 325 TRP TRP A . n D 4 326 LYS 326 326 326 LYS LYS A . n D 4 327 TYR 327 327 327 TYR TYR A . n D 4 328 ARG 328 328 328 ARG ARG A . n D 4 329 GLU 329 329 329 GLU GLU A . n D 4 330 PRO 330 330 330 PRO PRO A . n D 4 331 LYS 331 331 331 LYS LYS A . n D 4 332 ASP 332 332 332 ASP ASP A . n D 4 333 ARG 333 333 333 ARG ARG A . n D 4 334 SER 334 334 334 SER SER A . n D 4 335 GLU 335 335 335 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MG 1 339 339 MG MG A . F 5 MG 1 340 340 MG MG A . G 6 NA 1 341 341 NA NA A . H 6 NA 1 342 342 NA NA A . I 7 DCT 1 338 338 DCT DCT A . J 8 HOH 1 500 500 HOH HOH T . J 8 HOH 2 505 505 HOH HOH T . J 8 HOH 3 517 517 HOH HOH T . J 8 HOH 4 521 521 HOH HOH T . J 8 HOH 5 529 529 HOH HOH T . J 8 HOH 6 537 537 HOH HOH T . J 8 HOH 7 540 540 HOH HOH T . J 8 HOH 8 549 549 HOH HOH T . J 8 HOH 9 560 560 HOH HOH T . J 8 HOH 10 575 575 HOH HOH T . J 8 HOH 11 589 589 HOH HOH T . J 8 HOH 12 598 598 HOH HOH T . J 8 HOH 13 601 601 HOH HOH T . J 8 HOH 14 602 602 HOH HOH T . J 8 HOH 15 603 603 HOH HOH T . J 8 HOH 16 604 604 HOH HOH T . J 8 HOH 17 605 605 HOH HOH T . J 8 HOH 18 608 608 HOH HOH T . J 8 HOH 19 610 610 HOH HOH T . J 8 HOH 20 634 634 HOH HOH T . J 8 HOH 21 635 635 HOH HOH T . J 8 HOH 22 641 641 HOH HOH T . J 8 HOH 23 642 642 HOH HOH T . J 8 HOH 24 643 643 HOH HOH T . J 8 HOH 25 655 655 HOH HOH T . J 8 HOH 26 658 658 HOH HOH T . J 8 HOH 27 665 665 HOH HOH T . J 8 HOH 28 667 667 HOH HOH T . J 8 HOH 29 671 671 HOH HOH T . J 8 HOH 30 676 676 HOH HOH T . J 8 HOH 31 686 686 HOH HOH T . J 8 HOH 32 687 687 HOH HOH T . J 8 HOH 33 688 688 HOH HOH T . J 8 HOH 34 695 695 HOH HOH T . J 8 HOH 35 698 698 HOH HOH T . J 8 HOH 36 700 700 HOH HOH T . J 8 HOH 37 708 708 HOH HOH T . J 8 HOH 38 713 713 HOH HOH T . J 8 HOH 39 714 714 HOH HOH T . J 8 HOH 40 718 718 HOH HOH T . J 8 HOH 41 720 720 HOH HOH T . J 8 HOH 42 745 745 HOH HOH T . J 8 HOH 43 747 747 HOH HOH T . J 8 HOH 44 764 764 HOH HOH T . J 8 HOH 45 768 768 HOH HOH T . J 8 HOH 46 773 773 HOH HOH T . J 8 HOH 47 791 791 HOH HOH T . J 8 HOH 48 793 793 HOH HOH T . J 8 HOH 49 805 805 HOH HOH T . J 8 HOH 50 823 823 HOH HOH T . K 8 HOH 1 551 551 HOH HOH P . K 8 HOH 2 562 562 HOH HOH P . K 8 HOH 3 637 637 HOH HOH P . K 8 HOH 4 659 659 HOH HOH P . K 8 HOH 5 674 674 HOH HOH P . K 8 HOH 6 675 675 HOH HOH P . K 8 HOH 7 677 677 HOH HOH P . K 8 HOH 8 694 694 HOH HOH P . K 8 HOH 9 697 697 HOH HOH P . K 8 HOH 10 701 701 HOH HOH P . K 8 HOH 11 731 731 HOH HOH P . K 8 HOH 12 740 740 HOH HOH P . K 8 HOH 13 751 751 HOH HOH P . K 8 HOH 14 761 761 HOH HOH P . K 8 HOH 15 766 766 HOH HOH P . K 8 HOH 16 781 781 HOH HOH P . K 8 HOH 17 790 790 HOH HOH P . K 8 HOH 18 792 792 HOH HOH P . K 8 HOH 19 795 795 HOH HOH P . K 8 HOH 20 813 813 HOH HOH P . K 8 HOH 21 821 821 HOH HOH P . L 8 HOH 1 501 501 HOH HOH D . L 8 HOH 2 522 522 HOH HOH D . L 8 HOH 3 526 526 HOH HOH D . L 8 HOH 4 587 587 HOH HOH D . L 8 HOH 5 588 588 HOH HOH D . L 8 HOH 6 590 590 HOH HOH D . L 8 HOH 7 595 595 HOH HOH D . L 8 HOH 8 606 606 HOH HOH D . L 8 HOH 9 615 615 HOH HOH D . L 8 HOH 10 646 646 HOH HOH D . L 8 HOH 11 649 649 HOH HOH D . L 8 HOH 12 650 650 HOH HOH D . L 8 HOH 13 652 652 HOH HOH D . L 8 HOH 14 656 656 HOH HOH D . L 8 HOH 15 662 662 HOH HOH D . L 8 HOH 16 672 672 HOH HOH D . L 8 HOH 17 678 678 HOH HOH D . L 8 HOH 18 680 680 HOH HOH D . L 8 HOH 19 703 703 HOH HOH D . L 8 HOH 20 728 728 HOH HOH D . L 8 HOH 21 742 742 HOH HOH D . L 8 HOH 22 753 753 HOH HOH D . L 8 HOH 23 754 754 HOH HOH D . L 8 HOH 24 772 772 HOH HOH D . L 8 HOH 25 778 778 HOH HOH D . L 8 HOH 26 810 810 HOH HOH D . L 8 HOH 27 818 818 HOH HOH D . M 8 HOH 1 502 502 HOH HOH A . M 8 HOH 2 503 503 HOH HOH A . M 8 HOH 3 504 504 HOH HOH A . M 8 HOH 4 506 506 HOH HOH A . M 8 HOH 5 507 507 HOH HOH A . M 8 HOH 6 508 508 HOH HOH A . M 8 HOH 7 509 509 HOH HOH A . M 8 HOH 8 510 510 HOH HOH A . M 8 HOH 9 511 511 HOH HOH A . M 8 HOH 10 512 512 HOH HOH A . M 8 HOH 11 513 513 HOH HOH A . M 8 HOH 12 514 514 HOH HOH A . M 8 HOH 13 515 515 HOH HOH A . M 8 HOH 14 516 516 HOH HOH A . M 8 HOH 15 518 518 HOH HOH A . M 8 HOH 16 519 519 HOH HOH A . M 8 HOH 17 520 520 HOH HOH A . M 8 HOH 18 523 523 HOH HOH A . M 8 HOH 19 524 524 HOH HOH A . M 8 HOH 20 525 525 HOH HOH A . M 8 HOH 21 527 527 HOH HOH A . M 8 HOH 22 528 528 HOH HOH A . M 8 HOH 23 530 530 HOH HOH A . M 8 HOH 24 531 531 HOH HOH A . M 8 HOH 25 532 532 HOH HOH A . M 8 HOH 26 533 533 HOH HOH A . M 8 HOH 27 534 534 HOH HOH A . M 8 HOH 28 535 535 HOH HOH A . M 8 HOH 29 536 536 HOH HOH A . M 8 HOH 30 538 538 HOH HOH A . M 8 HOH 31 539 539 HOH HOH A . M 8 HOH 32 542 542 HOH HOH A . M 8 HOH 33 543 543 HOH HOH A . M 8 HOH 34 544 544 HOH HOH A . M 8 HOH 35 545 545 HOH HOH A . M 8 HOH 36 546 546 HOH HOH A . M 8 HOH 37 547 547 HOH HOH A . M 8 HOH 38 548 548 HOH HOH A . M 8 HOH 39 550 550 HOH HOH A . M 8 HOH 40 552 552 HOH HOH A . M 8 HOH 41 553 553 HOH HOH A . M 8 HOH 42 554 554 HOH HOH A . M 8 HOH 43 555 555 HOH HOH A . M 8 HOH 44 556 556 HOH HOH A . M 8 HOH 45 557 557 HOH HOH A . M 8 HOH 46 558 558 HOH HOH A . M 8 HOH 47 559 559 HOH HOH A . M 8 HOH 48 561 561 HOH HOH A . M 8 HOH 49 564 564 HOH HOH A . M 8 HOH 50 565 565 HOH HOH A . M 8 HOH 51 566 566 HOH HOH A . M 8 HOH 52 567 567 HOH HOH A . M 8 HOH 53 568 568 HOH HOH A . M 8 HOH 54 569 569 HOH HOH A . M 8 HOH 55 570 570 HOH HOH A . M 8 HOH 56 572 572 HOH HOH A . M 8 HOH 57 573 573 HOH HOH A . M 8 HOH 58 574 574 HOH HOH A . M 8 HOH 59 576 576 HOH HOH A . M 8 HOH 60 577 577 HOH HOH A . M 8 HOH 61 578 578 HOH HOH A . M 8 HOH 62 579 579 HOH HOH A . M 8 HOH 63 580 580 HOH HOH A . M 8 HOH 64 581 581 HOH HOH A . M 8 HOH 65 582 582 HOH HOH A . M 8 HOH 66 583 583 HOH HOH A . M 8 HOH 67 584 584 HOH HOH A . M 8 HOH 68 585 585 HOH HOH A . M 8 HOH 69 586 586 HOH HOH A . M 8 HOH 70 591 591 HOH HOH A . M 8 HOH 71 592 592 HOH HOH A . M 8 HOH 72 593 593 HOH HOH A . M 8 HOH 73 594 594 HOH HOH A . M 8 HOH 74 596 596 HOH HOH A . M 8 HOH 75 597 597 HOH HOH A . M 8 HOH 76 599 599 HOH HOH A . M 8 HOH 77 600 600 HOH HOH A . M 8 HOH 78 607 607 HOH HOH A . M 8 HOH 79 609 609 HOH HOH A . M 8 HOH 80 611 611 HOH HOH A . M 8 HOH 81 612 612 HOH HOH A . M 8 HOH 82 613 613 HOH HOH A . M 8 HOH 83 614 614 HOH HOH A . M 8 HOH 84 616 616 HOH HOH A . M 8 HOH 85 617 617 HOH HOH A . M 8 HOH 86 618 618 HOH HOH A . M 8 HOH 87 619 619 HOH HOH A . M 8 HOH 88 620 620 HOH HOH A . M 8 HOH 89 621 621 HOH HOH A . M 8 HOH 90 622 622 HOH HOH A . M 8 HOH 91 623 623 HOH HOH A . M 8 HOH 92 624 624 HOH HOH A . M 8 HOH 93 625 625 HOH HOH A . M 8 HOH 94 626 626 HOH HOH A . M 8 HOH 95 627 627 HOH HOH A . M 8 HOH 96 628 628 HOH HOH A . M 8 HOH 97 629 629 HOH HOH A . M 8 HOH 98 630 630 HOH HOH A . M 8 HOH 99 631 631 HOH HOH A . M 8 HOH 100 632 632 HOH HOH A . M 8 HOH 101 633 633 HOH HOH A . M 8 HOH 102 636 636 HOH HOH A . M 8 HOH 103 638 638 HOH HOH A . M 8 HOH 104 639 639 HOH HOH A . M 8 HOH 105 640 640 HOH HOH A . M 8 HOH 106 644 644 HOH HOH A . M 8 HOH 107 645 645 HOH HOH A . M 8 HOH 108 647 647 HOH HOH A . M 8 HOH 109 648 648 HOH HOH A . M 8 HOH 110 651 651 HOH HOH A . M 8 HOH 111 653 653 HOH HOH A . M 8 HOH 112 654 654 HOH HOH A . M 8 HOH 113 657 657 HOH HOH A . M 8 HOH 114 660 660 HOH HOH A . M 8 HOH 115 661 661 HOH HOH A . M 8 HOH 116 663 663 HOH HOH A . M 8 HOH 117 664 664 HOH HOH A . M 8 HOH 118 666 666 HOH HOH A . M 8 HOH 119 668 668 HOH HOH A . M 8 HOH 120 669 669 HOH HOH A . M 8 HOH 121 670 670 HOH HOH A . M 8 HOH 122 673 673 HOH HOH A . M 8 HOH 123 679 679 HOH HOH A . M 8 HOH 124 681 681 HOH HOH A . M 8 HOH 125 682 682 HOH HOH A . M 8 HOH 126 683 683 HOH HOH A . M 8 HOH 127 684 684 HOH HOH A . M 8 HOH 128 685 685 HOH HOH A . M 8 HOH 129 689 689 HOH HOH A . M 8 HOH 130 690 690 HOH HOH A . M 8 HOH 131 691 691 HOH HOH A . M 8 HOH 132 692 692 HOH HOH A . M 8 HOH 133 693 693 HOH HOH A . M 8 HOH 134 696 696 HOH HOH A . M 8 HOH 135 699 699 HOH HOH A . M 8 HOH 136 702 702 HOH HOH A . M 8 HOH 137 704 704 HOH HOH A . M 8 HOH 138 705 705 HOH HOH A . M 8 HOH 139 706 706 HOH HOH A . M 8 HOH 140 707 707 HOH HOH A . M 8 HOH 141 709 709 HOH HOH A . M 8 HOH 142 710 710 HOH HOH A . M 8 HOH 143 711 711 HOH HOH A . M 8 HOH 144 712 712 HOH HOH A . M 8 HOH 145 715 715 HOH HOH A . M 8 HOH 146 716 716 HOH HOH A . M 8 HOH 147 717 717 HOH HOH A . M 8 HOH 148 719 719 HOH HOH A . M 8 HOH 149 721 721 HOH HOH A . M 8 HOH 150 722 722 HOH HOH A . M 8 HOH 151 723 723 HOH HOH A . M 8 HOH 152 724 724 HOH HOH A . M 8 HOH 153 725 725 HOH HOH A . M 8 HOH 154 726 726 HOH HOH A . M 8 HOH 155 727 727 HOH HOH A . M 8 HOH 156 729 729 HOH HOH A . M 8 HOH 157 730 730 HOH HOH A . M 8 HOH 158 732 732 HOH HOH A . M 8 HOH 159 733 733 HOH HOH A . M 8 HOH 160 734 734 HOH HOH A . M 8 HOH 161 735 735 HOH HOH A . M 8 HOH 162 736 736 HOH HOH A . M 8 HOH 163 737 737 HOH HOH A . M 8 HOH 164 738 738 HOH HOH A . M 8 HOH 165 739 739 HOH HOH A . M 8 HOH 166 741 741 HOH HOH A . M 8 HOH 167 743 743 HOH HOH A . M 8 HOH 168 744 744 HOH HOH A . M 8 HOH 169 746 746 HOH HOH A . M 8 HOH 170 748 748 HOH HOH A . M 8 HOH 171 749 749 HOH HOH A . M 8 HOH 172 750 750 HOH HOH A . M 8 HOH 173 752 752 HOH HOH A . M 8 HOH 174 755 755 HOH HOH A . M 8 HOH 175 756 756 HOH HOH A . M 8 HOH 176 757 757 HOH HOH A . M 8 HOH 177 758 758 HOH HOH A . M 8 HOH 178 759 759 HOH HOH A . M 8 HOH 179 760 760 HOH HOH A . M 8 HOH 180 762 762 HOH HOH A . M 8 HOH 181 763 763 HOH HOH A . M 8 HOH 182 765 765 HOH HOH A . M 8 HOH 183 767 767 HOH HOH A . M 8 HOH 184 769 769 HOH HOH A . M 8 HOH 185 770 770 HOH HOH A . M 8 HOH 186 771 771 HOH HOH A . M 8 HOH 187 774 774 HOH HOH A . M 8 HOH 188 775 775 HOH HOH A . M 8 HOH 189 776 776 HOH HOH A . M 8 HOH 190 777 777 HOH HOH A . M 8 HOH 191 779 779 HOH HOH A . M 8 HOH 192 780 780 HOH HOH A . M 8 HOH 193 782 782 HOH HOH A . M 8 HOH 194 783 783 HOH HOH A . M 8 HOH 195 784 784 HOH HOH A . M 8 HOH 196 785 785 HOH HOH A . M 8 HOH 197 786 786 HOH HOH A . M 8 HOH 198 787 787 HOH HOH A . M 8 HOH 199 788 788 HOH HOH A . M 8 HOH 200 789 789 HOH HOH A . M 8 HOH 201 794 794 HOH HOH A . M 8 HOH 202 796 796 HOH HOH A . M 8 HOH 203 797 797 HOH HOH A . M 8 HOH 204 798 798 HOH HOH A . M 8 HOH 205 799 799 HOH HOH A . M 8 HOH 206 800 800 HOH HOH A . M 8 HOH 207 801 801 HOH HOH A . M 8 HOH 208 802 802 HOH HOH A . M 8 HOH 209 803 803 HOH HOH A . M 8 HOH 210 804 804 HOH HOH A . M 8 HOH 211 806 806 HOH HOH A . M 8 HOH 212 807 807 HOH HOH A . M 8 HOH 213 808 808 HOH HOH A . M 8 HOH 214 809 809 HOH HOH A . M 8 HOH 215 811 811 HOH HOH A . M 8 HOH 216 812 812 HOH HOH A . M 8 HOH 217 814 814 HOH HOH A . M 8 HOH 218 815 815 HOH HOH A . M 8 HOH 219 816 816 HOH HOH A . M 8 HOH 220 817 817 HOH HOH A . M 8 HOH 221 819 819 HOH HOH A . M 8 HOH 222 820 820 HOH HOH A . M 8 HOH 223 822 822 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id DOC _pdbx_struct_mod_residue.label_seq_id 10 _pdbx_struct_mod_residue.auth_asym_id P _pdbx_struct_mod_residue.auth_comp_id DOC _pdbx_struct_mod_residue.auth_seq_id 10 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DC _pdbx_struct_mod_residue.details "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? K HOH . ? P HOH 766 ? 1_555 89.2 ? 2 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? D THR 101 ? A THR 101 ? 1_555 171.6 ? 3 O ? K HOH . ? P HOH 766 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? D THR 101 ? A THR 101 ? 1_555 83.8 ? 4 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 90.3 ? 5 O ? K HOH . ? P HOH 766 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 174.0 ? 6 O ? D THR 101 ? A THR 101 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 97.2 ? 7 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 96.9 ? 8 O ? K HOH . ? P HOH 766 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 102.1 ? 9 O ? D THR 101 ? A THR 101 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 89.0 ? 10 O ? D VAL 103 ? A VAL 103 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 72.0 ? 11 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? M HOH . ? A HOH 617 ? 1_555 86.1 ? 12 O ? K HOH . ? P HOH 766 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? M HOH . ? A HOH 617 ? 1_555 97.7 ? 13 O ? D THR 101 ? A THR 101 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? M HOH . ? A HOH 617 ? 1_555 90.4 ? 14 O ? D VAL 103 ? A VAL 103 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? M HOH . ? A HOH 617 ? 1_555 88.3 ? 15 O ? D ILE 106 ? A ILE 106 ? 1_555 NA ? G NA . ? A NA 341 ? 1_555 O ? M HOH . ? A HOH 617 ? 1_555 160.0 ? 16 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? L HOH . ? D HOH 587 ? 1_555 82.8 ? 17 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? L HOH . ? D HOH 588 ? 1_555 85.9 ? 18 O ? L HOH . ? D HOH 587 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? L HOH . ? D HOH 588 ? 1_555 73.0 ? 19 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? D LYS 60 ? A LYS 60 ? 1_555 166.2 ? 20 O ? L HOH . ? D HOH 587 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? D LYS 60 ? A LYS 60 ? 1_555 89.9 ? 21 O ? L HOH . ? D HOH 588 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? D LYS 60 ? A LYS 60 ? 1_555 103.3 ? 22 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 94.7 ? 23 O ? L HOH . ? D HOH 587 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 92.6 ? 24 O ? L HOH . ? D HOH 588 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 165.4 ? 25 O ? D LYS 60 ? A LYS 60 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 73.8 ? 26 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 86.9 ? 27 O ? L HOH . ? D HOH 587 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 166.6 ? 28 O ? L HOH . ? D HOH 588 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 97.7 ? 29 O ? D LYS 60 ? A LYS 60 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 101.8 ? 30 O ? D LEU 62 ? A LEU 62 ? 1_555 NA ? H NA . ? A NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 96.8 ? 31 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 89.8 ? 32 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O1A ? I DCT . ? A DCT 338 ? 1_555 90.3 ? 33 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O1A ? I DCT . ? A DCT 338 ? 1_555 90.6 ? 34 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O1G ? I DCT . ? A DCT 338 ? 1_555 88.3 ? 35 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O1G ? I DCT . ? A DCT 338 ? 1_555 178.1 ? 36 O1A ? I DCT . ? A DCT 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O1G ? I DCT . ? A DCT 338 ? 1_555 89.4 ? 37 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O2B ? I DCT . ? A DCT 338 ? 1_555 176.8 ? 38 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O2B ? I DCT . ? A DCT 338 ? 1_555 93.3 ? 39 O1A ? I DCT . ? A DCT 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O2B ? I DCT . ? A DCT 338 ? 1_555 90.6 ? 40 O1G ? I DCT . ? A DCT 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O2B ? I DCT . ? A DCT 338 ? 1_555 88.6 ? 41 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O ? M HOH . ? A HOH 530 ? 1_555 92.8 ? 42 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O ? M HOH . ? A HOH 530 ? 1_555 86.7 ? 43 O1A ? I DCT . ? A DCT 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O ? M HOH . ? A HOH 530 ? 1_555 175.9 ? 44 O1G ? I DCT . ? A DCT 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O ? M HOH . ? A HOH 530 ? 1_555 93.4 ? 45 O2B ? I DCT . ? A DCT 338 ? 1_555 MG ? E MG . ? A MG 339 ? 1_555 O ? M HOH . ? A HOH 530 ? 1_555 86.5 ? 46 OD2 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? F MG . ? A MG 340 ? 1_555 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 51.3 ? 47 OD2 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? F MG . ? A MG 340 ? 1_555 OD1 ? D ASP 192 ? A ASP 192 ? 1_555 135.4 ? 48 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? F MG . ? A MG 340 ? 1_555 OD1 ? D ASP 192 ? A ASP 192 ? 1_555 86.3 ? 49 OD2 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? F MG . ? A MG 340 ? 1_555 OD2 ? D ASP 256 ? A ASP 256 ? 1_555 106.1 ? 50 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? F MG . ? A MG 340 ? 1_555 OD2 ? D ASP 256 ? A ASP 256 ? 1_555 132.3 ? 51 OD1 ? D ASP 192 ? A ASP 192 ? 1_555 MG ? F MG . ? A MG 340 ? 1_555 OD2 ? D ASP 256 ? A ASP 256 ? 1_555 92.4 ? 52 OD2 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? F MG . ? A MG 340 ? 1_555 O1A ? I DCT . ? A DCT 338 ? 1_555 85.6 ? 53 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MG ? F MG . ? A MG 340 ? 1_555 O1A ? I DCT . ? A DCT 338 ? 1_555 66.1 ? 54 OD1 ? D ASP 192 ? A ASP 192 ? 1_555 MG ? F MG . ? A MG 340 ? 1_555 O1A ? I DCT . ? A DCT 338 ? 1_555 88.7 ? 55 OD2 ? D ASP 256 ? A ASP 256 ? 1_555 MG ? F MG . ? A MG 340 ? 1_555 O1A ? I DCT . ? A DCT 338 ? 1_555 161.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-06-16 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-02-15 5 'Structure model' 1 4 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_2 2 5 'Structure model' pdbx_initial_refinement_model 3 5 'Structure model' pdbx_struct_conn_angle 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.value' 23 5 'Structure model' '_struct_conn.pdbx_dist_value' 24 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 39 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 MERLOT phasing . ? 3 TNT refinement 5D ? 4 # _pdbx_entry_details.entry_id 1BPY _pdbx_entry_details.compound_details ;THE 3'-TERMINUS OF C P 10 IS 2'3'-DIDEOXYCYTIDINE. THE 5'-TERMINUS OF G D 1 IS PHOSPHORYLATED. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" T DC 1 ? ? "C3'" T DC 1 ? ? 1.381 1.419 -0.038 0.006 N 2 1 N1 T DC 1 ? ? C6 T DC 1 ? ? 1.330 1.367 -0.037 0.006 N 3 1 "O3'" T DG 3 ? ? "C3'" T DG 3 ? ? 1.379 1.419 -0.040 0.006 N 4 1 N9 T DG 3 ? ? C4 T DG 3 ? ? 1.428 1.375 0.053 0.008 N 5 1 P T DC 8 ? ? "O5'" T DC 8 ? ? 1.657 1.593 0.064 0.010 N 6 1 "C5'" T DC 8 ? ? "C4'" T DC 8 ? ? 1.555 1.512 0.043 0.007 N 7 1 "O3'" T DG 9 ? ? "C3'" T DG 9 ? ? 1.352 1.419 -0.067 0.006 N 8 1 N3 T DA 14 ? ? C4 T DA 14 ? ? 1.306 1.344 -0.038 0.006 N 9 1 N3 P DC 2 ? ? C4 P DC 2 ? ? 1.379 1.335 0.044 0.007 N 10 1 "O3'" P DT 3 ? ? "C3'" P DT 3 ? ? 1.367 1.419 -0.052 0.006 N 11 1 N9 P DA 5 ? ? C4 P DA 5 ? ? 1.313 1.374 -0.061 0.006 N 12 1 "C1'" P DT 6 ? ? N1 P DT 6 ? ? 1.378 1.468 -0.090 0.014 N 13 1 "O3'" P DG 9 ? ? "C3'" P DG 9 ? ? 1.337 1.419 -0.082 0.006 N 14 1 P D DG 1 ? ? OP3 D DG 1 ? ? 1.505 1.607 -0.102 0.012 N 15 1 "O3'" D DG 1 ? ? "C3'" D DG 1 ? ? 1.378 1.419 -0.041 0.006 N 16 1 CD A GLU 21 ? ? OE2 A GLU 21 ? ? 1.331 1.252 0.079 0.011 N 17 1 CD A GLU 26 ? ? OE1 A GLU 26 ? ? 1.337 1.252 0.085 0.011 N 18 1 CD A GLU 75 ? ? OE1 A GLU 75 ? ? 1.321 1.252 0.069 0.011 N 19 1 CD A GLU 117 ? ? OE2 A GLU 117 ? ? 1.335 1.252 0.083 0.011 N 20 1 CD A GLU 123 ? ? OE1 A GLU 123 ? ? 1.330 1.252 0.078 0.011 N 21 1 CD A GLU 147 ? ? OE2 A GLU 147 ? ? 1.329 1.252 0.077 0.011 N 22 1 CD A GLU 153 ? ? OE2 A GLU 153 ? ? 1.330 1.252 0.078 0.011 N 23 1 CD A GLU 154 ? ? OE2 A GLU 154 ? ? 1.335 1.252 0.083 0.011 N 24 1 CD A GLU 232 ? ? OE2 A GLU 232 ? ? 1.339 1.252 0.087 0.011 N 25 1 CD A GLU 247 ? ? OE2 A GLU 247 ? ? 1.321 1.252 0.069 0.011 N 26 1 CD A GLU 288 ? ? OE2 A GLU 288 ? ? 1.329 1.252 0.077 0.011 N 27 1 CD A GLU 295 ? ? OE2 A GLU 295 ? ? 1.330 1.252 0.078 0.011 N 28 1 CD A GLU 335 ? ? OE2 A GLU 335 ? ? 1.321 1.252 0.069 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" T DC 1 ? ? "C1'" T DC 1 ? ? N1 T DC 1 ? ? 111.72 108.30 3.42 0.30 N 2 1 "C3'" T DC 1 ? ? "O3'" T DC 1 ? ? P T DC 2 ? ? 110.24 119.70 -9.46 1.20 Y 3 1 P T DC 2 ? ? "O5'" T DC 2 ? ? "C5'" T DC 2 ? ? 110.94 120.90 -9.96 1.60 N 4 1 "O4'" T DC 2 ? ? "C1'" T DC 2 ? ? N1 T DC 2 ? ? 103.25 108.00 -4.75 0.70 N 5 1 "O5'" T DG 3 ? ? "C5'" T DG 3 ? ? "C4'" T DG 3 ? ? 103.72 109.40 -5.68 0.80 N 6 1 N9 T DG 3 ? ? "C1'" T DG 3 ? ? "C2'" T DG 3 ? ? 123.33 114.30 9.03 1.40 N 7 1 "O4'" T DG 3 ? ? "C1'" T DG 3 ? ? N9 T DG 3 ? ? 100.64 108.00 -7.36 0.70 N 8 1 N3 T DG 3 ? ? C4 T DG 3 ? ? N9 T DG 3 ? ? 130.18 126.00 4.18 0.60 N 9 1 C8 T DA 4 ? ? N9 T DA 4 ? ? C4 T DA 4 ? ? 108.80 105.80 3.00 0.40 N 10 1 "O4'" T DC 5 ? ? "C1'" T DC 5 ? ? "C2'" T DC 5 ? ? 100.75 105.90 -5.15 0.80 N 11 1 "O4'" T DC 8 ? ? "C1'" T DC 8 ? ? N1 T DC 8 ? ? 114.35 108.30 6.05 0.30 N 12 1 "O4'" T DG 9 ? ? "C1'" T DG 9 ? ? N9 T DG 9 ? ? 110.85 108.30 2.55 0.30 N 13 1 C8 T DA 11 ? ? N9 T DA 11 ? ? C4 T DA 11 ? ? 108.91 105.80 3.11 0.40 N 14 1 "O4'" T DT 12 ? ? "C1'" T DT 12 ? ? N1 T DT 12 ? ? 112.37 108.30 4.07 0.30 N 15 1 C8 T DA 14 ? ? N9 T DA 14 ? ? C4 T DA 14 ? ? 108.55 105.80 2.75 0.40 N 16 1 N1 T DG 15 ? ? C6 T DG 15 ? ? O6 T DG 15 ? ? 116.10 119.90 -3.80 0.60 N 17 1 "O5'" T DC 16 ? ? "C5'" T DC 16 ? ? "C4'" T DC 16 ? ? 104.55 109.40 -4.85 0.80 N 18 1 "O4'" T DC 16 ? ? "C1'" T DC 16 ? ? N1 T DC 16 ? ? 113.72 108.30 5.42 0.30 N 19 1 C8 P DG 1 ? ? N9 P DG 1 ? ? C4 P DG 1 ? ? 109.75 106.40 3.35 0.40 N 20 1 "O4'" P DC 2 ? ? "C1'" P DC 2 ? ? N1 P DC 2 ? ? 112.85 108.30 4.55 0.30 N 21 1 "O4'" P DT 3 ? ? "C1'" P DT 3 ? ? N1 P DT 3 ? ? 113.88 108.30 5.58 0.30 N 22 1 "O4'" P DG 4 ? ? "C1'" P DG 4 ? ? N9 P DG 4 ? ? 111.55 108.30 3.25 0.30 N 23 1 "O4'" P DA 5 ? ? "C1'" P DA 5 ? ? "C2'" P DA 5 ? ? 110.74 106.80 3.94 0.50 N 24 1 N7 P DA 5 ? ? C8 P DA 5 ? ? N9 P DA 5 ? ? 110.35 113.80 -3.45 0.50 N 25 1 C8 P DA 5 ? ? N9 P DA 5 ? ? C4 P DA 5 ? ? 110.21 105.80 4.41 0.40 N 26 1 "O4'" P DG 7 ? ? "C4'" P DG 7 ? ? "C3'" P DG 7 ? ? 110.08 106.00 4.08 0.60 N 27 1 "O4'" P DC 8 ? ? "C1'" P DC 8 ? ? N1 P DC 8 ? ? 114.48 108.30 6.18 0.30 N 28 1 "O4'" P DG 9 ? ? "C1'" P DG 9 ? ? N9 P DG 9 ? ? 113.35 108.30 5.05 0.30 N 29 1 C8 D DG 1 ? ? N9 D DG 1 ? ? C4 D DG 1 ? ? 109.21 106.40 2.81 0.40 N 30 1 N3 D DG 1 ? ? C4 D DG 1 ? ? N9 D DG 1 ? ? 129.93 126.00 3.93 0.60 N 31 1 "C5'" D DT 2 ? ? "C4'" D DT 2 ? ? "C3'" D DT 2 ? ? 101.95 114.10 -12.15 1.80 N 32 1 "O4'" D DT 2 ? ? "C1'" D DT 2 ? ? "C2'" D DT 2 ? ? 109.88 106.80 3.08 0.50 N 33 1 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? N9 D DG 4 ? ? 111.72 108.30 3.42 0.30 N 34 1 "C3'" D DG 4 ? ? "O3'" D DG 4 ? ? P D DG 5 ? ? 127.94 119.70 8.24 1.20 Y 35 1 CB A ASP 17 ? ? CG A ASP 17 ? ? OD1 A ASP 17 ? ? 112.07 118.30 -6.23 0.90 N 36 1 CB A ASP 17 ? ? CG A ASP 17 ? ? OD2 A ASP 17 ? ? 123.78 118.30 5.48 0.90 N 37 1 N A LYS 41 ? ? CA A LYS 41 ? ? CB A LYS 41 ? ? 122.58 110.60 11.98 1.80 N 38 1 CB A TYR 49 ? ? CG A TYR 49 ? ? CD2 A TYR 49 ? ? 117.39 121.00 -3.61 0.60 N 39 1 CB A ASP 74 ? ? CG A ASP 74 ? ? OD1 A ASP 74 ? ? 125.08 118.30 6.78 0.90 N 40 1 CB A ASP 74 ? ? CG A ASP 74 ? ? OD2 A ASP 74 ? ? 110.57 118.30 -7.73 0.90 N 41 1 NE A ARG 83 ? ? CZ A ARG 83 ? ? NH1 A ARG 83 ? ? 123.92 120.30 3.62 0.50 N 42 1 CB A ASP 91 ? ? CG A ASP 91 ? ? OD1 A ASP 91 ? ? 125.40 118.30 7.10 0.90 N 43 1 CB A ASP 91 ? ? CG A ASP 91 ? ? OD2 A ASP 91 ? ? 111.64 118.30 -6.66 0.90 N 44 1 CB A ASP 116 ? ? CG A ASP 116 ? ? OD2 A ASP 116 ? ? 111.75 118.30 -6.55 0.90 N 45 1 CB A LYS 120 ? ? CA A LYS 120 ? ? C A LYS 120 ? ? 97.84 110.40 -12.56 2.00 N 46 1 CB A ASP 124 ? ? CG A ASP 124 ? ? OD2 A ASP 124 ? ? 112.72 118.30 -5.58 0.90 N 47 1 CB A ASP 130 ? ? CG A ASP 130 ? ? OD2 A ASP 130 ? ? 112.22 118.30 -6.08 0.90 N 48 1 NE A ARG 137 ? ? CZ A ARG 137 ? ? NH1 A ARG 137 ? ? 125.57 120.30 5.27 0.50 N 49 1 NE A ARG 137 ? ? CZ A ARG 137 ? ? NH2 A ARG 137 ? ? 116.85 120.30 -3.45 0.50 N 50 1 CB A ASP 145 ? ? CG A ASP 145 ? ? OD2 A ASP 145 ? ? 111.06 118.30 -7.24 0.90 N 51 1 N A ARG 152 ? ? CA A ARG 152 ? ? CB A ARG 152 ? ? 121.46 110.60 10.86 1.80 N 52 1 NE A ARG 152 ? ? CZ A ARG 152 ? ? NH1 A ARG 152 ? ? 123.86 120.30 3.56 0.50 N 53 1 NE A ARG 152 ? ? CZ A ARG 152 ? ? NH2 A ARG 152 ? ? 116.76 120.30 -3.54 0.50 N 54 1 CB A ASP 160 ? ? CG A ASP 160 ? ? OD2 A ASP 160 ? ? 110.84 118.30 -7.46 0.90 N 55 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD1 A ASP 190 ? ? 125.54 118.30 7.24 0.90 N 56 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD2 A ASP 190 ? ? 111.21 118.30 -7.09 0.90 N 57 1 CB A ASP 192 ? ? CG A ASP 192 ? ? OD1 A ASP 192 ? ? 111.43 118.30 -6.87 0.90 N 58 1 CB A ASP 192 ? ? CG A ASP 192 ? ? OD2 A ASP 192 ? ? 124.85 118.30 6.55 0.90 N 59 1 N A SER 199 ? ? CA A SER 199 ? ? CB A SER 199 ? ? 100.07 110.50 -10.43 1.50 N 60 1 N A SER 204 ? ? CA A SER 204 ? ? CB A SER 204 ? ? 100.43 110.50 -10.07 1.50 N 61 1 N A SER 204 ? ? CA A SER 204 ? ? C A SER 204 ? ? 137.75 111.00 26.75 2.70 N 62 1 N A THR 205 ? ? CA A THR 205 ? ? CB A THR 205 ? ? 125.26 110.30 14.96 1.90 N 63 1 N A THR 205 ? ? CA A THR 205 ? ? C A THR 205 ? ? 93.98 111.00 -17.02 2.70 N 64 1 CB A GLN 213 ? ? CA A GLN 213 ? ? C A GLN 213 ? ? 98.29 110.40 -12.11 2.00 N 65 1 N A SER 229 ? ? CA A SER 229 ? ? CB A SER 229 ? ? 122.53 110.50 12.03 1.50 N 66 1 CB A ASP 246 ? ? CG A ASP 246 ? ? OD1 A ASP 246 ? ? 112.04 118.30 -6.26 0.90 N 67 1 CB A ASP 246 ? ? CG A ASP 246 ? ? OD2 A ASP 246 ? ? 124.60 118.30 6.30 0.90 N 68 1 N A LYS 248 ? ? CA A LYS 248 ? ? CB A LYS 248 ? ? 125.77 110.60 15.17 1.80 N 69 1 CB A ASP 256 ? ? CG A ASP 256 ? ? OD1 A ASP 256 ? ? 124.92 118.30 6.62 0.90 N 70 1 NE A ARG 258 ? ? CZ A ARG 258 ? ? NH1 A ARG 258 ? ? 124.47 120.30 4.17 0.50 N 71 1 NE A ARG 258 ? ? CZ A ARG 258 ? ? NH2 A ARG 258 ? ? 116.15 120.30 -4.15 0.50 N 72 1 CB A ASP 276 ? ? CG A ASP 276 ? ? OD1 A ASP 276 ? ? 124.90 118.30 6.60 0.90 N 73 1 CB A ASP 276 ? ? CG A ASP 276 ? ? OD2 A ASP 276 ? ? 112.67 118.30 -5.63 0.90 N 74 1 CB A THR 297 ? ? CA A THR 297 ? ? C A THR 297 ? ? 92.37 111.60 -19.23 2.70 N 75 1 CB A ASP 314 ? ? CG A ASP 314 ? ? OD1 A ASP 314 ? ? 111.55 118.30 -6.75 0.90 N 76 1 CB A ASP 332 ? ? CG A ASP 332 ? ? OD1 A ASP 332 ? ? 123.80 118.30 5.50 0.90 N 77 1 CB A ASP 332 ? ? CG A ASP 332 ? ? OD2 A ASP 332 ? ? 111.05 118.30 -7.25 0.90 N 78 1 NE A ARG 333 ? ? CZ A ARG 333 ? ? NH1 A ARG 333 ? ? 125.93 120.30 5.63 0.50 N 79 1 NE A ARG 333 ? ? CZ A ARG 333 ? ? NH2 A ARG 333 ? ? 116.17 120.30 -4.13 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 11 ? ? -175.35 -51.28 2 1 ALA A 32 ? ? -117.63 77.11 3 1 LYS A 61 ? ? -59.33 -7.73 4 1 LYS A 120 ? ? -150.46 15.67 5 1 ASN A 128 ? ? -143.85 39.82 6 1 PHE A 143 ? ? -25.08 -52.58 7 1 ASP A 170 ? ? -163.10 110.78 8 1 CYS A 178 ? ? -98.10 -136.21 9 1 SER A 202 ? ? -42.64 -11.09 10 1 GLU A 203 ? ? -147.97 53.86 11 1 LYS A 230 ? ? -165.80 115.98 12 1 ASP A 246 ? ? 67.19 -4.91 13 1 GLU A 249 ? ? -39.28 149.41 14 1 SER A 275 ? ? -56.51 176.77 15 1 GLN A 324 ? ? 75.71 45.23 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? D MET 1 2 1 Y 1 A SER 2 ? D SER 2 3 1 Y 1 A LYS 3 ? D LYS 3 4 1 Y 1 A ARG 4 ? D ARG 4 5 1 Y 1 A LYS 5 ? D LYS 5 6 1 Y 1 A ALA 6 ? D ALA 6 7 1 Y 1 A PRO 7 ? D PRO 7 8 1 Y 1 A GLN 8 ? D GLN 8 9 1 Y 1 A GLU 9 ? D GLU 9 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1BPY 'double helix' 1BPY 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 C DG 5 1_555 0.054 0.221 0.474 -7.507 -7.983 3.139 1 T_DC1:DG5_D T 1 ? D 5 ? 19 1 1 A DC 2 1_555 C DG 4 1_555 0.307 -0.273 0.285 1.761 0.852 -3.419 2 T_DC2:DG4_D T 2 ? D 4 ? 19 1 1 A DG 3 1_555 C DC 3 1_555 -0.324 -0.013 0.250 -0.007 -9.146 9.824 3 T_DG3:DC3_D T 3 ? D 3 ? ? 1 1 A DA 4 1_555 C DT 2 1_555 0.206 -0.143 -0.128 4.566 -1.479 -4.878 4 T_DA4:DT2_D T 4 ? D 2 ? 20 1 1 A DC 5 1_555 C DG 1 1_555 0.000 -0.185 -0.428 12.754 -1.510 1.488 5 T_DC5:DG1_D T 5 ? D 1 ? 19 1 1 A DG 7 1_555 B DOC 10 1_555 0.404 0.044 -0.168 11.652 7.696 -2.196 6 T_DG7:DOC10_P T 7 ? P 10 ? 19 1 1 A DC 8 1_555 B DG 9 1_555 0.318 -0.207 -0.497 18.339 -6.802 0.584 7 T_DC8:DG9_P T 8 ? P 9 ? 19 1 1 A DG 9 1_555 B DC 8 1_555 -0.352 -0.245 -0.036 0.029 -0.418 -1.059 8 T_DG9:DC8_P T 9 ? P 8 ? 19 1 1 A DC 10 1_555 B DG 7 1_555 0.147 -0.454 -0.045 8.339 -6.789 0.682 9 T_DC10:DG7_P T 10 ? P 7 ? 19 1 1 A DA 11 1_555 B DT 6 1_555 0.410 -0.405 0.174 -1.656 -5.977 3.890 10 T_DA11:DT6_P T 11 ? P 6 ? 20 1 1 A DT 12 1_555 B DA 5 1_555 0.051 -0.182 0.622 -2.190 -9.899 4.144 11 T_DT12:DA5_P T 12 ? P 5 ? 20 1 1 A DC 13 1_555 B DG 4 1_555 0.239 -0.198 -0.022 2.676 -9.151 -0.107 12 T_DC13:DG4_P T 13 ? P 4 ? 19 1 1 A DA 14 1_555 B DT 3 1_555 0.177 -0.343 0.375 -1.741 -0.331 -9.065 13 T_DA14:DT3_P T 14 ? P 3 ? 20 1 1 A DG 15 1_555 B DC 2 1_555 0.127 -0.443 0.084 2.234 -6.776 5.895 14 T_DG15:DC2_P T 15 ? P 2 ? 19 1 1 A DC 16 1_555 B DG 1 1_555 0.360 -0.648 0.005 4.950 -7.383 -3.248 15 T_DC16:DG1_P T 16 ? P 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 C DG 5 1_555 A DC 2 1_555 C DG 4 1_555 -0.067 -0.174 3.017 3.820 6.973 38.955 -1.001 0.507 2.925 10.325 -5.657 39.728 1 TT_DC1DC2:DG4DG5_DD T 1 ? D 5 ? T 2 ? D 4 ? 1 A DC 2 1_555 C DG 4 1_555 A DG 3 1_555 C DC 3 1_555 -0.412 0.772 3.358 -4.518 1.024 33.656 1.152 -0.046 3.404 1.759 7.757 33.964 2 TT_DC2DG3:DC3DG4_DD T 2 ? D 4 ? T 3 ? D 3 ? 1 A DG 3 1_555 C DC 3 1_555 A DA 4 1_555 C DT 2 1_555 -0.546 0.023 3.229 0.305 -2.655 36.181 0.404 0.919 3.215 -4.268 -0.490 36.276 3 TT_DG3DA4:DT2DC3_DD T 3 ? D 3 ? T 4 ? D 2 ? 1 A DA 4 1_555 C DT 2 1_555 A DC 5 1_555 C DG 1 1_555 0.552 -0.350 3.100 1.471 -0.832 27.688 -0.538 -0.814 3.133 -1.737 -3.069 27.739 4 TT_DA4DC5:DG1DT2_DD T 4 ? D 2 ? T 5 ? D 1 ? 1 A DG 7 1_555 B DOC 10 1_555 A DC 8 1_555 B DG 9 1_555 0.576 -0.746 3.278 3.018 6.143 28.404 -2.801 -0.495 3.095 12.295 -6.041 29.200 5 TT_DG7DC8:DG9DOC10_PP T 7 ? P 10 ? T 8 ? P 9 ? 1 A DC 8 1_555 B DG 9 1_555 A DG 9 1_555 B DC 8 1_555 -1.215 -0.772 3.835 -5.024 3.250 35.126 -1.824 1.119 3.882 5.338 8.250 35.616 6 TT_DC8DG9:DC8DG9_PP T 8 ? P 9 ? T 9 ? P 8 ? 1 A DG 9 1_555 B DC 8 1_555 A DC 10 1_555 B DG 7 1_555 -0.245 -0.417 3.280 1.726 1.043 31.006 -0.978 0.787 3.247 1.949 -3.224 31.070 7 TT_DG9DC10:DG7DC8_PP T 9 ? P 8 ? T 10 ? P 7 ? 1 A DC 10 1_555 B DG 7 1_555 A DA 11 1_555 B DT 6 1_555 0.189 -0.340 3.442 -0.787 4.930 39.859 -1.082 -0.368 3.374 7.197 1.149 40.157 8 TT_DC10DA11:DT6DG7_PP T 10 ? P 7 ? T 11 ? P 6 ? 1 A DA 11 1_555 B DT 6 1_555 A DT 12 1_555 B DA 5 1_555 0.308 -0.677 3.165 -0.945 4.752 30.983 -2.104 -0.740 3.020 8.828 1.755 31.350 9 TT_DA11DT12:DA5DT6_PP T 11 ? P 6 ? T 12 ? P 5 ? 1 A DT 12 1_555 B DA 5 1_555 A DC 13 1_555 B DG 4 1_555 -0.041 -0.231 3.134 6.998 3.732 35.721 -0.859 0.985 3.034 5.994 -11.238 36.563 10 TT_DT12DC13:DG4DA5_PP T 12 ? P 5 ? T 13 ? P 4 ? 1 A DC 13 1_555 B DG 4 1_555 A DA 14 1_555 B DT 3 1_555 -0.561 0.092 3.316 -5.342 10.665 35.187 -1.329 0.142 3.255 17.047 8.540 37.094 11 TT_DC13DA14:DT3DG4_PP T 13 ? P 4 ? T 14 ? P 3 ? 1 A DA 14 1_555 B DT 3 1_555 A DG 15 1_555 B DC 2 1_555 0.026 -0.165 3.237 0.176 0.411 34.740 -0.338 -0.016 3.235 0.688 -0.295 34.742 12 TT_DA14DG15:DC2DT3_PP T 14 ? P 3 ? T 15 ? P 2 ? 1 A DG 15 1_555 B DC 2 1_555 A DC 16 1_555 B DG 1 1_555 0.203 -0.211 3.177 1.263 4.224 32.229 -1.093 -0.149 3.130 7.565 -2.263 32.522 13 TT_DG15DC16:DG1DC2_PP T 15 ? P 2 ? T 16 ? P 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'MAGNESIUM ION' MG 6 'SODIUM ION' NA 7 ;2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE ; DCT 8 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9ICW _pdbx_initial_refinement_model.details 'PDB ENTRY 9ICW' #