data_1CKT # _entry.id 1CKT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1CKT pdb_00001ckt 10.2210/pdb1ckt/pdb NDB PD0051 ? ? RCSB RCSB000932 ? ? WWPDB D_1000000932 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-06-30 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_conn_type 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.conn_type_id' 11 4 'Structure model' '_struct_conn.id' 12 4 'Structure model' '_struct_conn.pdbx_dist_value' 13 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 26 4 'Structure model' '_struct_conn_type.id' 27 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1CKT _pdbx_database_status.recvd_initial_deposition_date 1999-04-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ohndorf, U.-M.' 1 'Rould, M.A.' 2 'Pabo, C.O.' 3 'Lippard, S.J.' 4 # _citation.id primary _citation.title 'Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins.' _citation.journal_abbrev Nature _citation.journal_volume 399 _citation.page_first 708 _citation.page_last 712 _citation.year 1999 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10385126 _citation.pdbx_database_id_DOI 10.1038/21460 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ohndorf, U.M.' 1 ? primary 'Rould, M.A.' 2 ? primary 'He, Q.' 3 ? primary 'Pabo, C.O.' 4 ? primary 'Lippard, S.J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*(5IU)P*CP*TP*CP*TP*GP*GP*AP*CP*CP*TP*TP*CP*C)-3') ; 4872.949 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*GP*AP*AP*GP*GP*TP*CP*CP*AP*GP*AP*GP*AP*GP*G)-3') ; 5037.280 1 ? ? ? ? 3 polymer man 'HIGH MOBILITY GROUP 1 PROTEIN' 8497.785 1 ? ? 'RESIDUES 8-78, DOMAIN A' ? 4 non-polymer syn Cisplatin 300.045 1 ? ? ? ? 5 water nat water 18.015 74 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'HMG-1, AMPHOTERIN, HEPARIN-BINDING PROTEIN P30' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DC)(5IU)(DC)(DT)(DC)(DT)(DG)(DG)(DA)(DC)(DC)(DT)(DT)(DC)(DC)' CCUCTCTGGACCTTCC B ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DA)(DG)(DG)(DT)(DC)(DC)(DA)(DG)(DA)(DG)(DA)(DG)(DG)' GGAAGGTCCAGAGAGG C ? 3 'polypeptide(L)' no no KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 Cisplatin CPT 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 5IU n 1 4 DC n 1 5 DT n 1 6 DC n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DA n 1 11 DC n 1 12 DC n 1 13 DT n 1 14 DT n 1 15 DC n 1 16 DC n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DA n 2 5 DG n 2 6 DG n 2 7 DT n 2 8 DC n 2 9 DC n 2 10 DA n 2 11 DG n 2 12 DA n 2 13 DG n 2 14 DA n 2 15 DG n 2 16 DG n 3 1 LYS n 3 2 PRO n 3 3 ARG n 3 4 GLY n 3 5 LYS n 3 6 MET n 3 7 SER n 3 8 SER n 3 9 TYR n 3 10 ALA n 3 11 PHE n 3 12 PHE n 3 13 VAL n 3 14 GLN n 3 15 THR n 3 16 CYS n 3 17 ARG n 3 18 GLU n 3 19 GLU n 3 20 HIS n 3 21 LYS n 3 22 LYS n 3 23 LYS n 3 24 HIS n 3 25 PRO n 3 26 ASP n 3 27 ALA n 3 28 SER n 3 29 VAL n 3 30 ASN n 3 31 PHE n 3 32 SER n 3 33 GLU n 3 34 PHE n 3 35 SER n 3 36 LYS n 3 37 LYS n 3 38 CYS n 3 39 SER n 3 40 GLU n 3 41 ARG n 3 42 TRP n 3 43 LYS n 3 44 THR n 3 45 MET n 3 46 SER n 3 47 ALA n 3 48 LYS n 3 49 GLU n 3 50 LYS n 3 51 GLY n 3 52 LYS n 3 53 PHE n 3 54 GLU n 3 55 ASP n 3 56 MET n 3 57 ALA n 3 58 LYS n 3 59 ALA n 3 60 ASP n 3 61 LYS n 3 62 ALA n 3 63 ARG n 3 64 TYR n 3 65 GLU n 3 66 ARG n 3 67 GLU n 3 68 MET n 3 69 LYS n 3 70 THR n 3 71 TYR n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain SORAGYE-DAWLEY _entity_src_gen.gene_src_tissue LIVER _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene 'HMG1 DOMAIN A (M1-F89)' _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PT7-HMG1BA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5IU 'DNA linking' n "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 I N2 O8 P' 434.078 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CPT non-polymer . Cisplatin 'diammine(dichloro)platinum' 'Cl2 H6 N2 Pt' 300.045 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 101 101 DC C B . n A 1 2 DC 2 102 102 DC C B . n A 1 3 5IU 3 103 103 5IU +U B . n A 1 4 DC 4 104 104 DC C B . n A 1 5 DT 5 105 105 DT T B . n A 1 6 DC 6 106 106 DC C B . n A 1 7 DT 7 107 107 DT T B . n A 1 8 DG 8 108 108 DG G B . n A 1 9 DG 9 109 109 DG G B . n A 1 10 DA 10 110 110 DA A B . n A 1 11 DC 11 111 111 DC C B . n A 1 12 DC 12 112 112 DC C B . n A 1 13 DT 13 113 113 DT T B . n A 1 14 DT 14 114 114 DT T B . n A 1 15 DC 15 115 115 DC C B . n A 1 16 DC 16 116 116 DC C B . n B 2 1 DG 1 201 201 DG G C . n B 2 2 DG 2 202 202 DG G C . n B 2 3 DA 3 203 203 DA A C . n B 2 4 DA 4 204 204 DA A C . n B 2 5 DG 5 205 205 DG G C . n B 2 6 DG 6 206 206 DG G C . n B 2 7 DT 7 207 207 DT T C . n B 2 8 DC 8 208 208 DC C C . n B 2 9 DC 9 209 209 DC C C . n B 2 10 DA 10 210 210 DA A C . n B 2 11 DG 11 211 211 DG G C . n B 2 12 DA 12 212 212 DA A C . n B 2 13 DG 13 213 213 DG G C . n B 2 14 DA 14 214 214 DA A C . n B 2 15 DG 15 215 215 DG G C . n B 2 16 DG 16 216 216 DG G C . n C 3 1 LYS 1 7 7 LYS LYS A . n C 3 2 PRO 2 8 8 PRO PRO A . n C 3 3 ARG 3 9 9 ARG ARG A . n C 3 4 GLY 4 10 10 GLY GLY A . n C 3 5 LYS 5 11 11 LYS LYS A . n C 3 6 MET 6 12 12 MET MET A . n C 3 7 SER 7 13 13 SER SER A . n C 3 8 SER 8 14 14 SER SER A . n C 3 9 TYR 9 15 15 TYR TYR A . n C 3 10 ALA 10 16 16 ALA ALA A . n C 3 11 PHE 11 17 17 PHE PHE A . n C 3 12 PHE 12 18 18 PHE PHE A . n C 3 13 VAL 13 19 19 VAL VAL A . n C 3 14 GLN 14 20 20 GLN GLN A . n C 3 15 THR 15 21 21 THR THR A . n C 3 16 CYS 16 22 22 CYS CYS A . n C 3 17 ARG 17 23 23 ARG ARG A . n C 3 18 GLU 18 24 24 GLU GLU A . n C 3 19 GLU 19 25 25 GLU GLU A . n C 3 20 HIS 20 26 26 HIS HIS A . n C 3 21 LYS 21 27 27 LYS LYS A . n C 3 22 LYS 22 28 28 LYS LYS A . n C 3 23 LYS 23 29 29 LYS LYS A . n C 3 24 HIS 24 30 30 HIS HIS A . n C 3 25 PRO 25 31 31 PRO PRO A . n C 3 26 ASP 26 32 32 ASP ASP A . n C 3 27 ALA 27 33 33 ALA ALA A . n C 3 28 SER 28 34 34 SER SER A . n C 3 29 VAL 29 35 35 VAL VAL A . n C 3 30 ASN 30 36 36 ASN ASN A . n C 3 31 PHE 31 37 37 PHE PHE A . n C 3 32 SER 32 38 38 SER SER A . n C 3 33 GLU 33 39 39 GLU GLU A . n C 3 34 PHE 34 40 40 PHE PHE A . n C 3 35 SER 35 41 41 SER SER A . n C 3 36 LYS 36 42 42 LYS LYS A . n C 3 37 LYS 37 43 43 LYS LYS A . n C 3 38 CYS 38 44 44 CYS CYS A . n C 3 39 SER 39 45 45 SER SER A . n C 3 40 GLU 40 46 46 GLU GLU A . n C 3 41 ARG 41 47 47 ARG ARG A . n C 3 42 TRP 42 48 48 TRP TRP A . n C 3 43 LYS 43 49 49 LYS LYS A . n C 3 44 THR 44 50 50 THR THR A . n C 3 45 MET 45 51 51 MET MET A . n C 3 46 SER 46 52 52 SER SER A . n C 3 47 ALA 47 53 53 ALA ALA A . n C 3 48 LYS 48 54 54 LYS LYS A . n C 3 49 GLU 49 55 55 GLU GLU A . n C 3 50 LYS 50 56 56 LYS LYS A . n C 3 51 GLY 51 57 57 GLY GLY A . n C 3 52 LYS 52 58 58 LYS LYS A . n C 3 53 PHE 53 59 59 PHE PHE A . n C 3 54 GLU 54 60 60 GLU GLU A . n C 3 55 ASP 55 61 61 ASP ASP A . n C 3 56 MET 56 62 62 MET MET A . n C 3 57 ALA 57 63 63 ALA ALA A . n C 3 58 LYS 58 64 64 LYS LYS A . n C 3 59 ALA 59 65 65 ALA ALA A . n C 3 60 ASP 60 66 66 ASP ASP A . n C 3 61 LYS 61 67 67 LYS LYS A . n C 3 62 ALA 62 68 68 ALA ALA A . n C 3 63 ARG 63 69 69 ARG ARG A . n C 3 64 TYR 64 70 70 TYR TYR A . n C 3 65 GLU 65 71 71 GLU GLU A . n C 3 66 ARG 66 72 72 ARG ARG A . n C 3 67 GLU 67 73 73 GLU GLU A . n C 3 68 MET 68 74 74 MET MET A . n C 3 69 LYS 69 75 75 LYS LYS A . n C 3 70 THR 70 76 76 THR THR A . n C 3 71 TYR 71 77 77 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CPT 1 99 99 CPT CPT B . E 5 HOH 1 301 301 HOH HOH B . E 5 HOH 2 305 305 HOH HOH B . E 5 HOH 3 306 306 HOH HOH B . E 5 HOH 4 309 309 HOH HOH B . E 5 HOH 5 310 310 HOH HOH B . E 5 HOH 6 312 312 HOH HOH B . E 5 HOH 7 317 317 HOH HOH B . E 5 HOH 8 319 319 HOH HOH B . E 5 HOH 9 324 324 HOH HOH B . E 5 HOH 10 325 325 HOH HOH B . E 5 HOH 11 328 328 HOH HOH B . E 5 HOH 12 330 330 HOH HOH B . E 5 HOH 13 334 334 HOH HOH B . E 5 HOH 14 343 343 HOH HOH B . E 5 HOH 15 345 345 HOH HOH B . E 5 HOH 16 351 351 HOH HOH B . E 5 HOH 17 355 355 HOH HOH B . E 5 HOH 18 356 356 HOH HOH B . E 5 HOH 19 358 358 HOH HOH B . E 5 HOH 20 359 359 HOH HOH B . E 5 HOH 21 363 363 HOH HOH B . E 5 HOH 22 365 365 HOH HOH B . E 5 HOH 23 371 371 HOH HOH B . E 5 HOH 24 374 374 HOH HOH B . F 5 HOH 1 304 304 HOH HOH C . F 5 HOH 2 308 308 HOH HOH C . F 5 HOH 3 311 311 HOH HOH C . F 5 HOH 4 313 313 HOH HOH C . F 5 HOH 5 315 315 HOH HOH C . F 5 HOH 6 316 316 HOH HOH C . F 5 HOH 7 323 323 HOH HOH C . F 5 HOH 8 326 326 HOH HOH C . F 5 HOH 9 331 331 HOH HOH C . F 5 HOH 10 335 335 HOH HOH C . F 5 HOH 11 336 336 HOH HOH C . F 5 HOH 12 338 338 HOH HOH C . F 5 HOH 13 339 339 HOH HOH C . F 5 HOH 14 344 344 HOH HOH C . F 5 HOH 15 346 346 HOH HOH C . F 5 HOH 16 347 347 HOH HOH C . F 5 HOH 17 348 348 HOH HOH C . F 5 HOH 18 349 349 HOH HOH C . F 5 HOH 19 352 352 HOH HOH C . F 5 HOH 20 353 353 HOH HOH C . F 5 HOH 21 357 357 HOH HOH C . F 5 HOH 22 364 364 HOH HOH C . F 5 HOH 23 366 366 HOH HOH C . F 5 HOH 24 367 367 HOH HOH C . F 5 HOH 25 369 369 HOH HOH C . F 5 HOH 26 370 370 HOH HOH C . F 5 HOH 27 372 372 HOH HOH C . G 5 HOH 1 302 302 HOH HOH A . G 5 HOH 2 303 303 HOH HOH A . G 5 HOH 3 307 307 HOH HOH A . G 5 HOH 4 314 314 HOH HOH A . G 5 HOH 5 318 318 HOH HOH A . G 5 HOH 6 320 320 HOH HOH A . G 5 HOH 7 321 321 HOH HOH A . G 5 HOH 8 322 322 HOH HOH A . G 5 HOH 9 327 327 HOH HOH A . G 5 HOH 10 329 329 HOH HOH A . G 5 HOH 11 332 332 HOH HOH A . G 5 HOH 12 333 333 HOH HOH A . G 5 HOH 13 337 337 HOH HOH A . G 5 HOH 14 340 340 HOH HOH A . G 5 HOH 15 341 341 HOH HOH A . G 5 HOH 16 342 342 HOH HOH A . G 5 HOH 17 350 350 HOH HOH A . G 5 HOH 18 354 354 HOH HOH A . G 5 HOH 19 360 360 HOH HOH A . G 5 HOH 20 361 361 HOH HOH A . G 5 HOH 21 362 362 HOH HOH A . G 5 HOH 22 368 368 HOH HOH A . G 5 HOH 23 373 373 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 7 ? CG ? C LYS 1 CG 2 1 Y 1 A LYS 7 ? CD ? C LYS 1 CD 3 1 Y 1 A LYS 7 ? CE ? C LYS 1 CE 4 1 Y 1 A LYS 7 ? NZ ? C LYS 1 NZ 5 1 Y 1 A ARG 9 ? CG ? C ARG 3 CG 6 1 Y 1 A ARG 9 ? CD ? C ARG 3 CD 7 1 Y 1 A ARG 9 ? NE ? C ARG 3 NE 8 1 Y 1 A ARG 9 ? CZ ? C ARG 3 CZ 9 1 Y 1 A ARG 9 ? NH1 ? C ARG 3 NH1 10 1 Y 1 A ARG 9 ? NH2 ? C ARG 3 NH2 11 1 Y 1 A LYS 28 ? CG ? C LYS 22 CG 12 1 Y 1 A LYS 28 ? CD ? C LYS 22 CD 13 1 Y 1 A LYS 28 ? CE ? C LYS 22 CE 14 1 Y 1 A LYS 28 ? NZ ? C LYS 22 NZ 15 1 Y 1 A LYS 29 ? CD ? C LYS 23 CD 16 1 Y 1 A LYS 29 ? CE ? C LYS 23 CE 17 1 Y 1 A LYS 29 ? NZ ? C LYS 23 NZ 18 1 Y 1 A HIS 30 ? CG ? C HIS 24 CG 19 1 Y 1 A HIS 30 ? ND1 ? C HIS 24 ND1 20 1 Y 1 A HIS 30 ? CD2 ? C HIS 24 CD2 21 1 Y 1 A HIS 30 ? CE1 ? C HIS 24 CE1 22 1 Y 1 A HIS 30 ? NE2 ? C HIS 24 NE2 23 1 Y 1 A ASP 32 ? CG ? C ASP 26 CG 24 1 Y 1 A ASP 32 ? OD1 ? C ASP 26 OD1 25 1 Y 1 A ASP 32 ? OD2 ? C ASP 26 OD2 26 1 Y 1 A SER 34 ? OG ? C SER 28 OG 27 1 Y 1 A LYS 64 ? CG ? C LYS 58 CG 28 1 Y 1 A LYS 64 ? CD ? C LYS 58 CD 29 1 Y 1 A LYS 64 ? CE ? C LYS 58 CE 30 1 Y 1 A LYS 64 ? NZ ? C LYS 58 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement 3.851 ? 2 SCALEPACK 'data scaling' . ? 3 X-PLOR phasing . ? 4 # _cell.entry_id 1CKT _cell.length_a 105.210 _cell.length_b 50.410 _cell.length_c 53.130 _cell.angle_alpha 90.00 _cell.angle_beta 99.82 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CKT _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 # _exptl.entry_id 1CKT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.71 _exptl_crystal.density_percent_sol 69 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;CRYSTALS WERE OBTAINED FROM A SOLUTION THAT CONTAINED HEPES, MAGNESIUM ACETATE, PEG 3350, GLYCEROL AND DTT, pH 6.5, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'MAGNESIUM ACETATE' ? ? ? 1 2 1 HEPES ? ? ? 1 3 1 'PEG 3350' ? ? ? 1 4 1 GLYCEROL ? ? ? 1 5 1 DTT ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 123 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1CKT _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100 _reflns.d_resolution_high 2.5 _reflns.number_obs 9655 _reflns.number_all ? _reflns.percent_possible_obs 97.1 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.7 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1CKT _refine.ls_number_reflns_obs 17638 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 100 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs 65.6 _refine.ls_R_factor_obs 0.238 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.238 _refine.ls_R_factor_R_free 0.239 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 1710 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;TYR: TYR 77 C-TERMINAL OXYGEN OXT WAS NOT FOUND IN ELECTRON DENSITY MAP; C-TERMINAL RESIDUES 78-89 WERE NOT SEEN IN DENSITY MAP ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 562 _refine_hist.pdbx_number_atoms_nucleic_acid 650 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 1289 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 100 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.8 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 32.2 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.6 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1CKT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1CKT _struct.title 'CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN-MODIFIED DNA DUPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1CKT _struct_keywords.pdbx_keywords 'GENE REGULATION/DNA' _struct_keywords.text 'HIGH-MOBILITY GROUP DOMAIN, BENT DNA, PROTEIN-DRUG-DNA COMPLEX, GENE REGULATION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP HMG1_RAT P63159 3 7 ? ? 2 PDB 1CKT 1CKT 1 ? ? ? 3 PDB 1CKT 1CKT 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1CKT A 1 ? 71 ? P63159 7 ? 77 ? 7 77 2 2 1CKT B 1 ? 16 ? 1CKT 101 ? 116 ? 101 116 3 3 1CKT C 1 ? 16 ? 1CKT 201 ? 216 ? 201 216 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 8 ? LYS C 23 ? SER A 14 LYS A 29 1 ? 16 HELX_P HELX_P2 2 PHE C 31 ? LYS C 43 ? PHE A 37 LYS A 49 1 ? 13 HELX_P HELX_P3 3 GLY C 51 ? MET C 68 ? GLY A 57 MET A 74 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 2 "O3'" ? ? ? 1_555 A 5IU 3 P ? ? B DC 102 B 5IU 103 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale2 covale both ? A 5IU 3 "O3'" ? ? ? 1_555 A DC 4 P ? ? B 5IU 103 B DC 104 1_555 ? ? ? ? ? ? ? 1.600 ? ? metalc1 metalc ? ? D CPT . PT1 ? ? ? 1_555 A DG 8 N7 ? ? B CPT 99 B DG 108 1_555 ? ? ? ? ? ? ? 1.940 ? ? metalc2 metalc ? ? D CPT . PT1 ? ? ? 1_555 A DG 8 C8 ? ? B CPT 99 B DG 108 1_555 ? ? ? ? ? ? ? 2.638 ? ? metalc3 metalc ? ? D CPT . PT1 ? ? ? 1_555 A DG 8 C5 ? ? B CPT 99 B DG 108 1_555 ? ? ? ? ? ? ? 3.182 ? ? metalc4 metalc ? ? D CPT . PT1 ? ? ? 1_555 A DG 9 N7 ? ? B CPT 99 B DG 109 1_555 ? ? ? ? ? ? ? 1.890 ? ? metalc5 metalc ? ? D CPT . PT1 ? ? ? 1_555 A DG 9 C8 ? ? B CPT 99 B DG 109 1_555 ? ? ? ? ? ? ? 2.733 ? ? metalc6 metalc ? ? D CPT . PT1 ? ? ? 1_555 A DG 9 C5 ? ? B CPT 99 B DG 109 1_555 ? ? ? ? ? ? ? 3.085 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 16 N1 ? ? B DC 101 C DG 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 16 O6 ? ? B DC 101 C DG 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 16 N2 ? ? B DC 101 C DG 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 15 N1 ? ? B DC 102 C DG 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 15 O6 ? ? B DC 102 C DG 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 15 N2 ? ? B DC 102 C DG 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A 5IU 3 N3 ? ? ? 1_555 B DA 14 N1 ? ? B 5IU 103 C DA 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A 5IU 3 O4 ? ? ? 1_555 B DA 14 N6 ? ? B 5IU 103 C DA 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 13 N1 ? ? B DC 104 C DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 13 O6 ? ? B DC 104 C DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 13 N2 ? ? B DC 104 C DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 12 N1 ? ? B DT 105 C DA 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 12 N6 ? ? B DT 105 C DA 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 11 N1 ? ? B DC 106 C DG 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 11 O6 ? ? B DC 106 C DG 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 11 N2 ? ? B DC 106 C DG 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 107 C DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 107 C DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 108 C DC 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 108 C DC 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 108 C DC 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 109 C DC 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 109 C DC 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 109 C DC 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 110 C DT 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 110 C DT 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 6 N1 ? ? B DC 111 C DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 6 O6 ? ? B DC 111 C DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 6 N2 ? ? B DC 111 C DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 5 N1 ? ? B DC 112 C DG 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 5 O6 ? ? B DC 112 C DG 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 5 N2 ? ? B DC 112 C DG 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 4 N1 ? ? B DT 113 C DA 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 4 N6 ? ? B DT 113 C DA 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 114 C DA 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 114 C DA 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 2 N1 ? ? B DC 115 C DG 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 2 O6 ? ? B DC 115 C DG 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 2 N2 ? ? B DC 115 C DG 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 116 C DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 116 C DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 116 C DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 N1 ? D CPT . ? B CPT 99 ? 1_555 177.3 ? 2 N7 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 N2 ? D CPT . ? B CPT 99 ? 1_555 88.7 ? 3 N1 ? D CPT . ? B CPT 99 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 N2 ? D CPT . ? B CPT 99 ? 1_555 89.1 ? 4 N7 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C8 ? A DG 8 ? B DG 108 ? 1_555 28.1 ? 5 N1 ? D CPT . ? B CPT 99 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C8 ? A DG 8 ? B DG 108 ? 1_555 153.7 ? 6 N2 ? D CPT . ? B CPT 99 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C8 ? A DG 8 ? B DG 108 ? 1_555 91.4 ? 7 N7 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C5 ? A DG 8 ? B DG 108 ? 1_555 14.5 ? 8 N1 ? D CPT . ? B CPT 99 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C5 ? A DG 8 ? B DG 108 ? 1_555 164.6 ? 9 N2 ? D CPT . ? B CPT 99 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C5 ? A DG 8 ? B DG 108 ? 1_555 94.3 ? 10 C8 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C5 ? A DG 8 ? B DG 108 ? 1_555 41.4 ? 11 N7 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 N7 ? A DG 9 ? B DG 109 ? 1_555 90.3 ? 12 N1 ? D CPT . ? B CPT 99 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 N7 ? A DG 9 ? B DG 109 ? 1_555 92.0 ? 13 N2 ? D CPT . ? B CPT 99 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 N7 ? A DG 9 ? B DG 109 ? 1_555 176.1 ? 14 C8 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 N7 ? A DG 9 ? B DG 109 ? 1_555 86.0 ? 15 C5 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 N7 ? A DG 9 ? B DG 109 ? 1_555 85.6 ? 16 N7 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C8 ? A DG 9 ? B DG 109 ? 1_555 90.0 ? 17 N1 ? D CPT . ? B CPT 99 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C8 ? A DG 9 ? B DG 109 ? 1_555 92.7 ? 18 N2 ? D CPT . ? B CPT 99 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C8 ? A DG 9 ? B DG 109 ? 1_555 150.7 ? 19 C8 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C8 ? A DG 9 ? B DG 109 ? 1_555 74.5 ? 20 C5 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C8 ? A DG 9 ? B DG 109 ? 1_555 91.7 ? 21 N7 ? A DG 9 ? B DG 109 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C8 ? A DG 9 ? B DG 109 ? 1_555 25.5 ? 22 N7 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C5 ? A DG 9 ? B DG 109 ? 1_555 91.5 ? 23 N1 ? D CPT . ? B CPT 99 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C5 ? A DG 9 ? B DG 109 ? 1_555 90.3 ? 24 N2 ? D CPT . ? B CPT 99 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C5 ? A DG 9 ? B DG 109 ? 1_555 166.8 ? 25 C8 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C5 ? A DG 9 ? B DG 109 ? 1_555 95.0 ? 26 C5 ? A DG 8 ? B DG 108 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C5 ? A DG 9 ? B DG 109 ? 1_555 83.1 ? 27 N7 ? A DG 9 ? B DG 109 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C5 ? A DG 9 ? B DG 109 ? 1_555 17.0 ? 28 C8 ? A DG 9 ? B DG 109 ? 1_555 PT1 ? D CPT . ? B CPT 99 ? 1_555 C5 ? A DG 9 ? B DG 109 ? 1_555 42.5 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id CPT _struct_site.pdbx_auth_seq_id 99 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE CPT B 99' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 DG A 8 ? DG B 108 . ? 1_555 ? 2 AC1 2 DG A 9 ? DG B 109 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 31 ? ? -69.69 10.26 2 1 ALA A 33 ? ? -20.80 116.83 3 1 VAL A 35 ? ? 67.37 101.27 4 1 ALA A 53 ? ? -39.60 -24.57 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC B 101 ? ? 0.064 'SIDE CHAIN' 2 1 DG C 215 ? ? 0.089 'SIDE CHAIN' # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 5IU _pdbx_struct_mod_residue.label_seq_id 3 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id 5IU _pdbx_struct_mod_residue.auth_seq_id 103 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DU _pdbx_struct_mod_residue.details "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5IU N1 N N N 1 5IU C2 C N N 2 5IU N3 N N N 3 5IU C4 C N N 4 5IU C5 C N N 5 5IU C6 C N N 6 5IU O2 O N N 7 5IU O4 O N N 8 5IU I5 I N N 9 5IU "C1'" C N R 10 5IU "C2'" C N N 11 5IU "C3'" C N S 12 5IU "C4'" C N R 13 5IU "O3'" O N N 14 5IU "O4'" O N N 15 5IU "C5'" C N N 16 5IU "O5'" O N N 17 5IU P P N N 18 5IU OP1 O N N 19 5IU OP2 O N N 20 5IU OP3 O N N 21 5IU HN3 H N N 22 5IU H6 H N N 23 5IU "H1'" H N N 24 5IU "H2'" H N N 25 5IU "H2''" H N N 26 5IU "H3'" H N N 27 5IU "H4'" H N N 28 5IU "HO3'" H N N 29 5IU "H5'" H N N 30 5IU "H5''" H N N 31 5IU HOP2 H N N 32 5IU HOP3 H N N 33 ALA N N N N 34 ALA CA C N S 35 ALA C C N N 36 ALA O O N N 37 ALA CB C N N 38 ALA OXT O N N 39 ALA H H N N 40 ALA H2 H N N 41 ALA HA H N N 42 ALA HB1 H N N 43 ALA HB2 H N N 44 ALA HB3 H N N 45 ALA HXT H N N 46 ARG N N N N 47 ARG CA C N S 48 ARG C C N N 49 ARG O O N N 50 ARG CB C N N 51 ARG CG C N N 52 ARG CD C N N 53 ARG NE N N N 54 ARG CZ C N N 55 ARG NH1 N N N 56 ARG NH2 N N N 57 ARG OXT O N N 58 ARG H H N N 59 ARG H2 H N N 60 ARG HA H N N 61 ARG HB2 H N N 62 ARG HB3 H N N 63 ARG HG2 H N N 64 ARG HG3 H N N 65 ARG HD2 H N N 66 ARG HD3 H N N 67 ARG HE H N N 68 ARG HH11 H N N 69 ARG HH12 H N N 70 ARG HH21 H N N 71 ARG HH22 H N N 72 ARG HXT H N N 73 ASN N N N N 74 ASN CA C N S 75 ASN C C N N 76 ASN O O N N 77 ASN CB C N N 78 ASN CG C N N 79 ASN OD1 O N N 80 ASN ND2 N N N 81 ASN OXT O N N 82 ASN H H N N 83 ASN H2 H N N 84 ASN HA H N N 85 ASN HB2 H N N 86 ASN HB3 H N N 87 ASN HD21 H N N 88 ASN HD22 H N N 89 ASN HXT H N N 90 ASP N N N N 91 ASP CA C N S 92 ASP C C N N 93 ASP O O N N 94 ASP CB C N N 95 ASP CG C N N 96 ASP OD1 O N N 97 ASP OD2 O N N 98 ASP OXT O N N 99 ASP H H N N 100 ASP H2 H N N 101 ASP HA H N N 102 ASP HB2 H N N 103 ASP HB3 H N N 104 ASP HD2 H N N 105 ASP HXT H N N 106 CPT PT1 PT N N 107 CPT N1 N N N 108 CPT N2 N N N 109 CPT H11 H N N 110 CPT H12 H N N 111 CPT H21 H N N 112 CPT H22 H N N 113 CPT CL2 CL N N 114 CPT CL1 CL N N 115 CPT H13 H N N 116 CPT H23 H N N 117 CYS N N N N 118 CYS CA C N R 119 CYS C C N N 120 CYS O O N N 121 CYS CB C N N 122 CYS SG S N N 123 CYS OXT O N N 124 CYS H H N N 125 CYS H2 H N N 126 CYS HA H N N 127 CYS HB2 H N N 128 CYS HB3 H N N 129 CYS HG H N N 130 CYS HXT H N N 131 DA OP3 O N N 132 DA P P N N 133 DA OP1 O N N 134 DA OP2 O N N 135 DA "O5'" O N N 136 DA "C5'" C N N 137 DA "C4'" C N R 138 DA "O4'" O N N 139 DA "C3'" C N S 140 DA "O3'" O N N 141 DA "C2'" C N N 142 DA "C1'" C N R 143 DA N9 N Y N 144 DA C8 C Y N 145 DA N7 N Y N 146 DA C5 C Y N 147 DA C6 C Y N 148 DA N6 N N N 149 DA N1 N Y N 150 DA C2 C Y N 151 DA N3 N Y N 152 DA C4 C Y N 153 DA HOP3 H N N 154 DA HOP2 H N N 155 DA "H5'" H N N 156 DA "H5''" H N N 157 DA "H4'" H N N 158 DA "H3'" H N N 159 DA "HO3'" H N N 160 DA "H2'" H N N 161 DA "H2''" H N N 162 DA "H1'" H N N 163 DA H8 H N N 164 DA H61 H N N 165 DA H62 H N N 166 DA H2 H N N 167 DC OP3 O N N 168 DC P P N N 169 DC OP1 O N N 170 DC OP2 O N N 171 DC "O5'" O N N 172 DC "C5'" C N N 173 DC "C4'" C N R 174 DC "O4'" O N N 175 DC "C3'" C N S 176 DC "O3'" O N N 177 DC "C2'" C N N 178 DC "C1'" C N R 179 DC N1 N N N 180 DC C2 C N N 181 DC O2 O N N 182 DC N3 N N N 183 DC C4 C N N 184 DC N4 N N N 185 DC C5 C N N 186 DC C6 C N N 187 DC HOP3 H N N 188 DC HOP2 H N N 189 DC "H5'" H N N 190 DC "H5''" H N N 191 DC "H4'" H N N 192 DC "H3'" H N N 193 DC "HO3'" H N N 194 DC "H2'" H N N 195 DC "H2''" H N N 196 DC "H1'" H N N 197 DC H41 H N N 198 DC H42 H N N 199 DC H5 H N N 200 DC H6 H N N 201 DG OP3 O N N 202 DG P P N N 203 DG OP1 O N N 204 DG OP2 O N N 205 DG "O5'" O N N 206 DG "C5'" C N N 207 DG "C4'" C N R 208 DG "O4'" O N N 209 DG "C3'" C N S 210 DG "O3'" O N N 211 DG "C2'" C N N 212 DG "C1'" C N R 213 DG N9 N Y N 214 DG C8 C Y N 215 DG N7 N Y N 216 DG C5 C Y N 217 DG C6 C N N 218 DG O6 O N N 219 DG N1 N N N 220 DG C2 C N N 221 DG N2 N N N 222 DG N3 N N N 223 DG C4 C Y N 224 DG HOP3 H N N 225 DG HOP2 H N N 226 DG "H5'" H N N 227 DG "H5''" H N N 228 DG "H4'" H N N 229 DG "H3'" H N N 230 DG "HO3'" H N N 231 DG "H2'" H N N 232 DG "H2''" H N N 233 DG "H1'" H N N 234 DG H8 H N N 235 DG H1 H N N 236 DG H21 H N N 237 DG H22 H N N 238 DT OP3 O N N 239 DT P P N N 240 DT OP1 O N N 241 DT OP2 O N N 242 DT "O5'" O N N 243 DT "C5'" C N N 244 DT "C4'" C N R 245 DT "O4'" O N N 246 DT "C3'" C N S 247 DT "O3'" O N N 248 DT "C2'" C N N 249 DT "C1'" C N R 250 DT N1 N N N 251 DT C2 C N N 252 DT O2 O N N 253 DT N3 N N N 254 DT C4 C N N 255 DT O4 O N N 256 DT C5 C N N 257 DT C7 C N N 258 DT C6 C N N 259 DT HOP3 H N N 260 DT HOP2 H N N 261 DT "H5'" H N N 262 DT "H5''" H N N 263 DT "H4'" H N N 264 DT "H3'" H N N 265 DT "HO3'" H N N 266 DT "H2'" H N N 267 DT "H2''" H N N 268 DT "H1'" H N N 269 DT H3 H N N 270 DT H71 H N N 271 DT H72 H N N 272 DT H73 H N N 273 DT H6 H N N 274 GLN N N N N 275 GLN CA C N S 276 GLN C C N N 277 GLN O O N N 278 GLN CB C N N 279 GLN CG C N N 280 GLN CD C N N 281 GLN OE1 O N N 282 GLN NE2 N N N 283 GLN OXT O N N 284 GLN H H N N 285 GLN H2 H N N 286 GLN HA H N N 287 GLN HB2 H N N 288 GLN HB3 H N N 289 GLN HG2 H N N 290 GLN HG3 H N N 291 GLN HE21 H N N 292 GLN HE22 H N N 293 GLN HXT H N N 294 GLU N N N N 295 GLU CA C N S 296 GLU C C N N 297 GLU O O N N 298 GLU CB C N N 299 GLU CG C N N 300 GLU CD C N N 301 GLU OE1 O N N 302 GLU OE2 O N N 303 GLU OXT O N N 304 GLU H H N N 305 GLU H2 H N N 306 GLU HA H N N 307 GLU HB2 H N N 308 GLU HB3 H N N 309 GLU HG2 H N N 310 GLU HG3 H N N 311 GLU HE2 H N N 312 GLU HXT H N N 313 GLY N N N N 314 GLY CA C N N 315 GLY C C N N 316 GLY O O N N 317 GLY OXT O N N 318 GLY H H N N 319 GLY H2 H N N 320 GLY HA2 H N N 321 GLY HA3 H N N 322 GLY HXT H N N 323 HIS N N N N 324 HIS CA C N S 325 HIS C C N N 326 HIS O O N N 327 HIS CB C N N 328 HIS CG C Y N 329 HIS ND1 N Y N 330 HIS CD2 C Y N 331 HIS CE1 C Y N 332 HIS NE2 N Y N 333 HIS OXT O N N 334 HIS H H N N 335 HIS H2 H N N 336 HIS HA H N N 337 HIS HB2 H N N 338 HIS HB3 H N N 339 HIS HD1 H N N 340 HIS HD2 H N N 341 HIS HE1 H N N 342 HIS HE2 H N N 343 HIS HXT H N N 344 HOH O O N N 345 HOH H1 H N N 346 HOH H2 H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5IU N1 C2 sing N N 1 5IU N1 C6 sing N N 2 5IU N1 "C1'" sing N N 3 5IU C2 N3 sing N N 4 5IU C2 O2 doub N N 5 5IU N3 C4 sing N N 6 5IU N3 HN3 sing N N 7 5IU C4 C5 sing N N 8 5IU C4 O4 doub N N 9 5IU C5 C6 doub N N 10 5IU C5 I5 sing N N 11 5IU C6 H6 sing N N 12 5IU "C1'" "C2'" sing N N 13 5IU "C1'" "O4'" sing N N 14 5IU "C1'" "H1'" sing N N 15 5IU "C2'" "C3'" sing N N 16 5IU "C2'" "H2'" sing N N 17 5IU "C2'" "H2''" sing N N 18 5IU "C3'" "C4'" sing N N 19 5IU "C3'" "O3'" sing N N 20 5IU "C3'" "H3'" sing N N 21 5IU "C4'" "O4'" sing N N 22 5IU "C4'" "C5'" sing N N 23 5IU "C4'" "H4'" sing N N 24 5IU "O3'" "HO3'" sing N N 25 5IU "C5'" "O5'" sing N N 26 5IU "C5'" "H5'" sing N N 27 5IU "C5'" "H5''" sing N N 28 5IU "O5'" P sing N N 29 5IU P OP1 doub N N 30 5IU P OP2 sing N N 31 5IU P OP3 sing N N 32 5IU OP2 HOP2 sing N N 33 5IU OP3 HOP3 sing N N 34 ALA N CA sing N N 35 ALA N H sing N N 36 ALA N H2 sing N N 37 ALA CA C sing N N 38 ALA CA CB sing N N 39 ALA CA HA sing N N 40 ALA C O doub N N 41 ALA C OXT sing N N 42 ALA CB HB1 sing N N 43 ALA CB HB2 sing N N 44 ALA CB HB3 sing N N 45 ALA OXT HXT sing N N 46 ARG N CA sing N N 47 ARG N H sing N N 48 ARG N H2 sing N N 49 ARG CA C sing N N 50 ARG CA CB sing N N 51 ARG CA HA sing N N 52 ARG C O doub N N 53 ARG C OXT sing N N 54 ARG CB CG sing N N 55 ARG CB HB2 sing N N 56 ARG CB HB3 sing N N 57 ARG CG CD sing N N 58 ARG CG HG2 sing N N 59 ARG CG HG3 sing N N 60 ARG CD NE sing N N 61 ARG CD HD2 sing N N 62 ARG CD HD3 sing N N 63 ARG NE CZ sing N N 64 ARG NE HE sing N N 65 ARG CZ NH1 sing N N 66 ARG CZ NH2 doub N N 67 ARG NH1 HH11 sing N N 68 ARG NH1 HH12 sing N N 69 ARG NH2 HH21 sing N N 70 ARG NH2 HH22 sing N N 71 ARG OXT HXT sing N N 72 ASN N CA sing N N 73 ASN N H sing N N 74 ASN N H2 sing N N 75 ASN CA C sing N N 76 ASN CA CB sing N N 77 ASN CA HA sing N N 78 ASN C O doub N N 79 ASN C OXT sing N N 80 ASN CB CG sing N N 81 ASN CB HB2 sing N N 82 ASN CB HB3 sing N N 83 ASN CG OD1 doub N N 84 ASN CG ND2 sing N N 85 ASN ND2 HD21 sing N N 86 ASN ND2 HD22 sing N N 87 ASN OXT HXT sing N N 88 ASP N CA sing N N 89 ASP N H sing N N 90 ASP N H2 sing N N 91 ASP CA C sing N N 92 ASP CA CB sing N N 93 ASP CA HA sing N N 94 ASP C O doub N N 95 ASP C OXT sing N N 96 ASP CB CG sing N N 97 ASP CB HB2 sing N N 98 ASP CB HB3 sing N N 99 ASP CG OD1 doub N N 100 ASP CG OD2 sing N N 101 ASP OD2 HD2 sing N N 102 ASP OXT HXT sing N N 103 CPT PT1 N1 sing N N 104 CPT PT1 N2 sing N N 105 CPT N1 H11 sing N N 106 CPT N1 H12 sing N N 107 CPT N1 H13 sing N N 108 CPT N2 H21 sing N N 109 CPT N2 H22 sing N N 110 CPT N2 H23 sing N N 111 CPT CL2 PT1 sing N N 112 CPT CL1 PT1 sing N N 113 CYS N CA sing N N 114 CYS N H sing N N 115 CYS N H2 sing N N 116 CYS CA C sing N N 117 CYS CA CB sing N N 118 CYS CA HA sing N N 119 CYS C O doub N N 120 CYS C OXT sing N N 121 CYS CB SG sing N N 122 CYS CB HB2 sing N N 123 CYS CB HB3 sing N N 124 CYS SG HG sing N N 125 CYS OXT HXT sing N N 126 DA OP3 P sing N N 127 DA OP3 HOP3 sing N N 128 DA P OP1 doub N N 129 DA P OP2 sing N N 130 DA P "O5'" sing N N 131 DA OP2 HOP2 sing N N 132 DA "O5'" "C5'" sing N N 133 DA "C5'" "C4'" sing N N 134 DA "C5'" "H5'" sing N N 135 DA "C5'" "H5''" sing N N 136 DA "C4'" "O4'" sing N N 137 DA "C4'" "C3'" sing N N 138 DA "C4'" "H4'" sing N N 139 DA "O4'" "C1'" sing N N 140 DA "C3'" "O3'" sing N N 141 DA "C3'" "C2'" sing N N 142 DA "C3'" "H3'" sing N N 143 DA "O3'" "HO3'" sing N N 144 DA "C2'" "C1'" sing N N 145 DA "C2'" "H2'" sing N N 146 DA "C2'" "H2''" sing N N 147 DA "C1'" N9 sing N N 148 DA "C1'" "H1'" sing N N 149 DA N9 C8 sing Y N 150 DA N9 C4 sing Y N 151 DA C8 N7 doub Y N 152 DA C8 H8 sing N N 153 DA N7 C5 sing Y N 154 DA C5 C6 sing Y N 155 DA C5 C4 doub Y N 156 DA C6 N6 sing N N 157 DA C6 N1 doub Y N 158 DA N6 H61 sing N N 159 DA N6 H62 sing N N 160 DA N1 C2 sing Y N 161 DA C2 N3 doub Y N 162 DA C2 H2 sing N N 163 DA N3 C4 sing Y N 164 DC OP3 P sing N N 165 DC OP3 HOP3 sing N N 166 DC P OP1 doub N N 167 DC P OP2 sing N N 168 DC P "O5'" sing N N 169 DC OP2 HOP2 sing N N 170 DC "O5'" "C5'" sing N N 171 DC "C5'" "C4'" sing N N 172 DC "C5'" "H5'" sing N N 173 DC "C5'" "H5''" sing N N 174 DC "C4'" "O4'" sing N N 175 DC "C4'" "C3'" sing N N 176 DC "C4'" "H4'" sing N N 177 DC "O4'" "C1'" sing N N 178 DC "C3'" "O3'" sing N N 179 DC "C3'" "C2'" sing N N 180 DC "C3'" "H3'" sing N N 181 DC "O3'" "HO3'" sing N N 182 DC "C2'" "C1'" sing N N 183 DC "C2'" "H2'" sing N N 184 DC "C2'" "H2''" sing N N 185 DC "C1'" N1 sing N N 186 DC "C1'" "H1'" sing N N 187 DC N1 C2 sing N N 188 DC N1 C6 sing N N 189 DC C2 O2 doub N N 190 DC C2 N3 sing N N 191 DC N3 C4 doub N N 192 DC C4 N4 sing N N 193 DC C4 C5 sing N N 194 DC N4 H41 sing N N 195 DC N4 H42 sing N N 196 DC C5 C6 doub N N 197 DC C5 H5 sing N N 198 DC C6 H6 sing N N 199 DG OP3 P sing N N 200 DG OP3 HOP3 sing N N 201 DG P OP1 doub N N 202 DG P OP2 sing N N 203 DG P "O5'" sing N N 204 DG OP2 HOP2 sing N N 205 DG "O5'" "C5'" sing N N 206 DG "C5'" "C4'" sing N N 207 DG "C5'" "H5'" sing N N 208 DG "C5'" "H5''" sing N N 209 DG "C4'" "O4'" sing N N 210 DG "C4'" "C3'" sing N N 211 DG "C4'" "H4'" sing N N 212 DG "O4'" "C1'" sing N N 213 DG "C3'" "O3'" sing N N 214 DG "C3'" "C2'" sing N N 215 DG "C3'" "H3'" sing N N 216 DG "O3'" "HO3'" sing N N 217 DG "C2'" "C1'" sing N N 218 DG "C2'" "H2'" sing N N 219 DG "C2'" "H2''" sing N N 220 DG "C1'" N9 sing N N 221 DG "C1'" "H1'" sing N N 222 DG N9 C8 sing Y N 223 DG N9 C4 sing Y N 224 DG C8 N7 doub Y N 225 DG C8 H8 sing N N 226 DG N7 C5 sing Y N 227 DG C5 C6 sing N N 228 DG C5 C4 doub Y N 229 DG C6 O6 doub N N 230 DG C6 N1 sing N N 231 DG N1 C2 sing N N 232 DG N1 H1 sing N N 233 DG C2 N2 sing N N 234 DG C2 N3 doub N N 235 DG N2 H21 sing N N 236 DG N2 H22 sing N N 237 DG N3 C4 sing N N 238 DT OP3 P sing N N 239 DT OP3 HOP3 sing N N 240 DT P OP1 doub N N 241 DT P OP2 sing N N 242 DT P "O5'" sing N N 243 DT OP2 HOP2 sing N N 244 DT "O5'" "C5'" sing N N 245 DT "C5'" "C4'" sing N N 246 DT "C5'" "H5'" sing N N 247 DT "C5'" "H5''" sing N N 248 DT "C4'" "O4'" sing N N 249 DT "C4'" "C3'" sing N N 250 DT "C4'" "H4'" sing N N 251 DT "O4'" "C1'" sing N N 252 DT "C3'" "O3'" sing N N 253 DT "C3'" "C2'" sing N N 254 DT "C3'" "H3'" sing N N 255 DT "O3'" "HO3'" sing N N 256 DT "C2'" "C1'" sing N N 257 DT "C2'" "H2'" sing N N 258 DT "C2'" "H2''" sing N N 259 DT "C1'" N1 sing N N 260 DT "C1'" "H1'" sing N N 261 DT N1 C2 sing N N 262 DT N1 C6 sing N N 263 DT C2 O2 doub N N 264 DT C2 N3 sing N N 265 DT N3 C4 sing N N 266 DT N3 H3 sing N N 267 DT C4 O4 doub N N 268 DT C4 C5 sing N N 269 DT C5 C7 sing N N 270 DT C5 C6 doub N N 271 DT C7 H71 sing N N 272 DT C7 H72 sing N N 273 DT C7 H73 sing N N 274 DT C6 H6 sing N N 275 GLN N CA sing N N 276 GLN N H sing N N 277 GLN N H2 sing N N 278 GLN CA C sing N N 279 GLN CA CB sing N N 280 GLN CA HA sing N N 281 GLN C O doub N N 282 GLN C OXT sing N N 283 GLN CB CG sing N N 284 GLN CB HB2 sing N N 285 GLN CB HB3 sing N N 286 GLN CG CD sing N N 287 GLN CG HG2 sing N N 288 GLN CG HG3 sing N N 289 GLN CD OE1 doub N N 290 GLN CD NE2 sing N N 291 GLN NE2 HE21 sing N N 292 GLN NE2 HE22 sing N N 293 GLN OXT HXT sing N N 294 GLU N CA sing N N 295 GLU N H sing N N 296 GLU N H2 sing N N 297 GLU CA C sing N N 298 GLU CA CB sing N N 299 GLU CA HA sing N N 300 GLU C O doub N N 301 GLU C OXT sing N N 302 GLU CB CG sing N N 303 GLU CB HB2 sing N N 304 GLU CB HB3 sing N N 305 GLU CG CD sing N N 306 GLU CG HG2 sing N N 307 GLU CG HG3 sing N N 308 GLU CD OE1 doub N N 309 GLU CD OE2 sing N N 310 GLU OE2 HE2 sing N N 311 GLU OXT HXT sing N N 312 GLY N CA sing N N 313 GLY N H sing N N 314 GLY N H2 sing N N 315 GLY CA C sing N N 316 GLY CA HA2 sing N N 317 GLY CA HA3 sing N N 318 GLY C O doub N N 319 GLY C OXT sing N N 320 GLY OXT HXT sing N N 321 HIS N CA sing N N 322 HIS N H sing N N 323 HIS N H2 sing N N 324 HIS CA C sing N N 325 HIS CA CB sing N N 326 HIS CA HA sing N N 327 HIS C O doub N N 328 HIS C OXT sing N N 329 HIS CB CG sing N N 330 HIS CB HB2 sing N N 331 HIS CB HB3 sing N N 332 HIS CG ND1 sing Y N 333 HIS CG CD2 doub Y N 334 HIS ND1 CE1 doub Y N 335 HIS ND1 HD1 sing N N 336 HIS CD2 NE2 sing Y N 337 HIS CD2 HD2 sing N N 338 HIS CE1 NE2 sing Y N 339 HIS CE1 HE1 sing N N 340 HIS NE2 HE2 sing N N 341 HIS OXT HXT sing N N 342 HOH O H1 sing N N 343 HOH O H2 sing N N 344 LYS N CA sing N N 345 LYS N H sing N N 346 LYS N H2 sing N N 347 LYS CA C sing N N 348 LYS CA CB sing N N 349 LYS CA HA sing N N 350 LYS C O doub N N 351 LYS C OXT sing N N 352 LYS CB CG sing N N 353 LYS CB HB2 sing N N 354 LYS CB HB3 sing N N 355 LYS CG CD sing N N 356 LYS CG HG2 sing N N 357 LYS CG HG3 sing N N 358 LYS CD CE sing N N 359 LYS CD HD2 sing N N 360 LYS CD HD3 sing N N 361 LYS CE NZ sing N N 362 LYS CE HE2 sing N N 363 LYS CE HE3 sing N N 364 LYS NZ HZ1 sing N N 365 LYS NZ HZ2 sing N N 366 LYS NZ HZ3 sing N N 367 LYS OXT HXT sing N N 368 MET N CA sing N N 369 MET N H sing N N 370 MET N H2 sing N N 371 MET CA C sing N N 372 MET CA CB sing N N 373 MET CA HA sing N N 374 MET C O doub N N 375 MET C OXT sing N N 376 MET CB CG sing N N 377 MET CB HB2 sing N N 378 MET CB HB3 sing N N 379 MET CG SD sing N N 380 MET CG HG2 sing N N 381 MET CG HG3 sing N N 382 MET SD CE sing N N 383 MET CE HE1 sing N N 384 MET CE HE2 sing N N 385 MET CE HE3 sing N N 386 MET OXT HXT sing N N 387 PHE N CA sing N N 388 PHE N H sing N N 389 PHE N H2 sing N N 390 PHE CA C sing N N 391 PHE CA CB sing N N 392 PHE CA HA sing N N 393 PHE C O doub N N 394 PHE C OXT sing N N 395 PHE CB CG sing N N 396 PHE CB HB2 sing N N 397 PHE CB HB3 sing N N 398 PHE CG CD1 doub Y N 399 PHE CG CD2 sing Y N 400 PHE CD1 CE1 sing Y N 401 PHE CD1 HD1 sing N N 402 PHE CD2 CE2 doub Y N 403 PHE CD2 HD2 sing N N 404 PHE CE1 CZ doub Y N 405 PHE CE1 HE1 sing N N 406 PHE CE2 CZ sing Y N 407 PHE CE2 HE2 sing N N 408 PHE CZ HZ sing N N 409 PHE OXT HXT sing N N 410 PRO N CA sing N N 411 PRO N CD sing N N 412 PRO N H sing N N 413 PRO CA C sing N N 414 PRO CA CB sing N N 415 PRO CA HA sing N N 416 PRO C O doub N N 417 PRO C OXT sing N N 418 PRO CB CG sing N N 419 PRO CB HB2 sing N N 420 PRO CB HB3 sing N N 421 PRO CG CD sing N N 422 PRO CG HG2 sing N N 423 PRO CG HG3 sing N N 424 PRO CD HD2 sing N N 425 PRO CD HD3 sing N N 426 PRO OXT HXT sing N N 427 SER N CA sing N N 428 SER N H sing N N 429 SER N H2 sing N N 430 SER CA C sing N N 431 SER CA CB sing N N 432 SER CA HA sing N N 433 SER C O doub N N 434 SER C OXT sing N N 435 SER CB OG sing N N 436 SER CB HB2 sing N N 437 SER CB HB3 sing N N 438 SER OG HG sing N N 439 SER OXT HXT sing N N 440 THR N CA sing N N 441 THR N H sing N N 442 THR N H2 sing N N 443 THR CA C sing N N 444 THR CA CB sing N N 445 THR CA HA sing N N 446 THR C O doub N N 447 THR C OXT sing N N 448 THR CB OG1 sing N N 449 THR CB CG2 sing N N 450 THR CB HB sing N N 451 THR OG1 HG1 sing N N 452 THR CG2 HG21 sing N N 453 THR CG2 HG22 sing N N 454 THR CG2 HG23 sing N N 455 THR OXT HXT sing N N 456 TRP N CA sing N N 457 TRP N H sing N N 458 TRP N H2 sing N N 459 TRP CA C sing N N 460 TRP CA CB sing N N 461 TRP CA HA sing N N 462 TRP C O doub N N 463 TRP C OXT sing N N 464 TRP CB CG sing N N 465 TRP CB HB2 sing N N 466 TRP CB HB3 sing N N 467 TRP CG CD1 doub Y N 468 TRP CG CD2 sing Y N 469 TRP CD1 NE1 sing Y N 470 TRP CD1 HD1 sing N N 471 TRP CD2 CE2 doub Y N 472 TRP CD2 CE3 sing Y N 473 TRP NE1 CE2 sing Y N 474 TRP NE1 HE1 sing N N 475 TRP CE2 CZ2 sing Y N 476 TRP CE3 CZ3 doub Y N 477 TRP CE3 HE3 sing N N 478 TRP CZ2 CH2 doub Y N 479 TRP CZ2 HZ2 sing N N 480 TRP CZ3 CH2 sing Y N 481 TRP CZ3 HZ3 sing N N 482 TRP CH2 HH2 sing N N 483 TRP OXT HXT sing N N 484 TYR N CA sing N N 485 TYR N H sing N N 486 TYR N H2 sing N N 487 TYR CA C sing N N 488 TYR CA CB sing N N 489 TYR CA HA sing N N 490 TYR C O doub N N 491 TYR C OXT sing N N 492 TYR CB CG sing N N 493 TYR CB HB2 sing N N 494 TYR CB HB3 sing N N 495 TYR CG CD1 doub Y N 496 TYR CG CD2 sing Y N 497 TYR CD1 CE1 sing Y N 498 TYR CD1 HD1 sing N N 499 TYR CD2 CE2 doub Y N 500 TYR CD2 HD2 sing N N 501 TYR CE1 CZ doub Y N 502 TYR CE1 HE1 sing N N 503 TYR CE2 CZ sing Y N 504 TYR CE2 HE2 sing N N 505 TYR CZ OH sing N N 506 TYR OH HH sing N N 507 TYR OXT HXT sing N N 508 VAL N CA sing N N 509 VAL N H sing N N 510 VAL N H2 sing N N 511 VAL CA C sing N N 512 VAL CA CB sing N N 513 VAL CA HA sing N N 514 VAL C O doub N N 515 VAL C OXT sing N N 516 VAL CB CG1 sing N N 517 VAL CB CG2 sing N N 518 VAL CB HB sing N N 519 VAL CG1 HG11 sing N N 520 VAL CG1 HG12 sing N N 521 VAL CG1 HG13 sing N N 522 VAL CG2 HG21 sing N N 523 VAL CG2 HG22 sing N N 524 VAL CG2 HG23 sing N N 525 VAL OXT HXT sing N N 526 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1CKT 'double helix' 1CKT 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 16 1_555 -0.323 -0.226 0.002 2.121 -7.051 0.631 1 B_DC101:DG216_C B 101 ? C 216 ? 19 1 1 A DC 2 1_555 B DG 15 1_555 -0.060 -0.136 0.407 -11.316 -2.624 4.789 2 B_DC102:DG215_C B 102 ? C 215 ? 19 1 1 A 5IU 3 1_555 B DA 14 1_555 0.239 -0.172 -0.453 5.930 -7.015 1.438 3 B_5IU103:DA214_C B 103 ? C 214 ? 20 1 1 A DC 4 1_555 B DG 13 1_555 -0.146 0.078 0.148 -1.191 -9.197 -1.739 4 B_DC104:DG213_C B 104 ? C 213 ? 19 1 1 A DT 5 1_555 B DA 12 1_555 -0.503 -0.334 -0.045 2.690 -10.547 -4.787 5 B_DT105:DA212_C B 105 ? C 212 ? 20 1 1 A DC 6 1_555 B DG 11 1_555 0.091 -0.308 0.106 -2.043 -8.243 1.190 6 B_DC106:DG211_C B 106 ? C 211 ? 19 1 1 A DT 7 1_555 B DA 10 1_555 0.138 -0.207 0.341 8.068 1.675 -4.570 7 B_DT107:DA210_C B 107 ? C 210 ? 20 1 1 A DG 8 1_555 B DC 9 1_555 -0.816 -0.445 0.444 30.429 -5.037 -1.465 8 B_DG108:DC209_C B 108 ? C 209 ? 19 1 1 A DG 9 1_555 B DC 8 1_555 -0.067 -0.365 -0.504 -10.843 9.538 -7.052 9 B_DG109:DC208_C B 109 ? C 208 ? 19 1 1 A DA 10 1_555 B DT 7 1_555 0.368 0.058 0.320 6.309 -6.461 -7.046 10 B_DA110:DT207_C B 110 ? C 207 ? 20 1 1 A DC 11 1_555 B DG 6 1_555 0.130 -0.088 -0.079 13.715 -15.802 0.417 11 B_DC111:DG206_C B 111 ? C 206 ? 19 1 1 A DC 12 1_555 B DG 5 1_555 -0.145 -0.196 0.285 -3.564 -12.180 -5.938 12 B_DC112:DG205_C B 112 ? C 205 ? 19 1 1 A DT 13 1_555 B DA 4 1_555 -0.331 -0.120 0.231 -0.620 -13.640 -5.601 13 B_DT113:DA204_C B 113 ? C 204 ? 20 1 1 A DT 14 1_555 B DA 3 1_555 -0.231 -0.171 -0.221 -2.402 -17.563 -5.721 14 B_DT114:DA203_C B 114 ? C 203 ? 20 1 1 A DC 15 1_555 B DG 2 1_555 -0.251 -0.093 -0.114 -5.348 -8.951 1.191 15 B_DC115:DG202_C B 115 ? C 202 ? 19 1 1 A DC 16 1_555 B DG 1 1_555 -0.359 -0.239 -0.326 2.196 -5.785 -4.683 16 B_DC116:DG201_C B 116 ? C 201 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 16 1_555 A DC 2 1_555 B DG 15 1_555 0.762 -0.873 3.612 -2.346 1.430 35.450 -1.657 -1.622 3.520 2.343 3.845 35.553 1 BB_DC101DC102:DG215DG216_CC B 101 ? C 216 ? B 102 ? C 215 ? 1 A DC 2 1_555 B DG 15 1_555 A 5IU 3 1_555 B DA 14 1_555 -0.989 -0.718 2.947 7.578 -0.023 30.705 -1.315 3.032 2.635 -0.043 -14.044 31.604 2 BB_DC1025IU103:DA214DG215_CC B 102 ? C 215 ? B 103 ? C 214 ? 1 A 5IU 3 1_555 B DA 14 1_555 A DC 4 1_555 B DG 13 1_555 -0.363 -0.533 3.540 -5.732 2.981 32.507 -1.479 -0.411 3.490 5.260 10.115 33.126 3 BB_5IU103DC104:DG213DA214_CC B 103 ? C 214 ? B 104 ? C 213 ? 1 A DC 4 1_555 B DG 13 1_555 A DT 5 1_555 B DA 12 1_555 -0.116 -0.258 3.086 1.969 4.317 33.401 -1.101 0.499 3.019 7.464 -3.404 33.727 4 BB_DC104DT105:DA212DG213_CC B 104 ? C 213 ? B 105 ? C 212 ? 1 A DT 5 1_555 B DA 12 1_555 A DC 6 1_555 B DG 11 1_555 0.646 -0.021 3.409 1.108 4.757 35.692 -0.740 -0.880 3.396 7.716 -1.797 36.014 5 BB_DT105DC106:DG211DA212_CC B 105 ? C 212 ? B 106 ? C 211 ? 1 A DC 6 1_555 B DG 11 1_555 A DT 7 1_555 B DA 10 1_555 -0.365 0.444 3.221 -0.846 6.883 31.326 -0.437 0.509 3.251 12.554 1.543 32.066 6 BB_DC106DT107:DA210DG211_CC B 106 ? C 211 ? B 107 ? C 210 ? 1 A DT 7 1_555 B DA 10 1_555 A DG 8 1_555 B DC 9 1_555 1.494 1.837 3.047 9.952 -1.944 26.988 4.127 -0.790 3.244 -3.991 -20.431 28.797 7 BB_DT107DG108:DC209DA210_CC B 107 ? C 210 ? B 108 ? C 209 ? 1 A DG 8 1_555 B DC 9 1_555 A DG 9 1_555 B DC 8 1_555 -0.342 -0.624 5.633 -6.761 60.609 14.423 -5.413 -0.208 0.798 77.485 8.644 62.507 8 BB_DG108DG109:DC208DC209_CC B 108 ? C 209 ? B 109 ? C 208 ? 1 A DG 9 1_555 B DC 8 1_555 A DA 10 1_555 B DT 7 1_555 -0.905 -0.102 3.042 -7.041 6.809 36.075 -1.017 0.526 3.089 10.753 11.120 37.338 9 BB_DG109DA110:DT207DC208_CC B 109 ? C 208 ? B 110 ? C 207 ? 1 A DA 10 1_555 B DT 7 1_555 A DC 11 1_555 B DG 6 1_555 0.883 -0.841 3.118 2.244 7.905 29.676 -3.025 -1.256 2.862 15.073 -4.279 30.768 10 BB_DA110DC111:DG206DT207_CC B 110 ? C 207 ? B 111 ? C 206 ? 1 A DC 11 1_555 B DG 6 1_555 A DC 12 1_555 B DG 5 1_555 0.135 -0.390 3.633 0.045 9.307 38.597 -1.768 -0.193 3.452 13.836 -0.067 39.661 11 BB_DC111DC112:DG205DG206_CC B 111 ? C 206 ? B 112 ? C 205 ? 1 A DC 12 1_555 B DG 5 1_555 A DT 13 1_555 B DA 4 1_555 -0.780 -0.109 3.233 1.129 3.968 30.350 -0.976 1.696 3.163 7.534 -2.143 30.623 12 BB_DC112DT113:DA204DG205_CC B 112 ? C 205 ? B 113 ? C 204 ? 1 A DT 13 1_555 B DA 4 1_555 A DT 14 1_555 B DA 3 1_555 -0.174 -0.273 3.200 2.939 -0.544 38.379 -0.348 0.621 3.182 -0.826 -4.463 38.491 13 BB_DT113DT114:DA203DA204_CC B 113 ? C 204 ? B 114 ? C 203 ? 1 A DT 14 1_555 B DA 3 1_555 A DC 15 1_555 B DG 2 1_555 1.312 0.353 3.265 3.741 0.036 40.329 0.506 -1.470 3.368 0.051 -5.413 40.495 14 BB_DT114DC115:DG202DA203_CC B 114 ? C 203 ? B 115 ? C 202 ? 1 A DC 15 1_555 B DG 2 1_555 A DC 16 1_555 B DG 1 1_555 -0.681 0.118 3.111 1.323 3.982 27.941 -0.637 1.688 3.063 8.188 -2.720 28.248 15 BB_DC115DC116:DG201DG202_CC B 115 ? C 202 ? B 116 ? C 201 ? # _atom_sites.entry_id 1CKT _atom_sites.fract_transf_matrix[1][1] 0.009505 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001645 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019837 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019102 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O P PT S # loop_